The mutant strain of anti-acetate of bacillus coli DH 5 alpha and selection thereof and application
Technical field
The present invention relates to a kind of intestinal bacteria, particularly a kind of mutant strain of bacillus coli DH 5 alpha and selection thereof and application.
Background technology
Intestinal bacteria (Esherichia coli) have that growth is fast, cultivation is with low cost, genetic background is clear, easily realize advantage such as high-density culture, are one of most widely used heterologous gene expression systems.It is exactly can accumulate some metabolic by-prodss in culturing process that yet there is a bigger problem in this expression system, mainly be acetate, not only cause the waste of carbon source, and can suppress the growth of thalline and reduce expression of exogenous gene efficient, seriously influence the throughput of intestinal bacteria when high-density culture and (seen document: Trends in Biotechnology, 1996,14:98~105).
In order to solve acetate to colibacillary inhibition problem, some researchs in past mainly concentrate on the following aspects: (1) medium optimization; (2) fermenting process control; (3) seed selection acetate generates approach-phosphotransacetylase (PTA) or E.C. 2.7.2.1 (ACK) deletion mutantion strain; (4) metabolic engineering method.The method of the inhibition of these several solution acetate mainly concentrates in the generation that reduces acetate in the culturing process, and growth and the raising expression of exogenous gene efficient of improving thalline has all been obtained certain effect, but the part that also comes with some shortcomings.When being optimized substratum, when selecting other carbon source such as glycerine place of glucose for use, tend to increase the cost of cultivation, its effect also has than big-difference with bacterial strain uses therefor is different.Restricted stream adds glucose can effectively be controlled acetate with control ratio growth velocity subcritical value generation in the fermenting process, but can make thalline be in the semistarvation attitude, be with the sacrifice specific growth rate, the prolongation incubation time is realized, is unfavorable for the expression of exogenous gene relevant with growth especially.Fermentation-separation coupling operation can be removed when by product produces, but higher to equipment requirements, investment strengthens, and is difficult to use in scale operation.PTA and ACK deletion mutantion strain though can reduce the generation of acetate, tend to cause cell growth to slow down, and accumulate other organic acid such as pyruvic acid, succsinic acid, and this can suppress expression of exogenous gene equally.It is the basic method that solves the acetate problem that the metabolic engineering method is transformed coli strain, need to consider the structure and the regulation and control characteristics of colibacillary whole metabolism network comprehensively, remain further to be studied, existing work mostly is guides metabolism stream into the more weak metabolite of restraining effect or polysaccharide, and disappearance PTA and ACK etc.
The anti-acetate intestinal bacteria of seed selection mutant bacteria also can be used as a kind of effective means to strengthen tolerance and the raising expression of exogenous gene efficient of bacterial strain to acetate, the contriver had once screened the mutant strain of the anti-acetate JL3 of intestinal bacteria JM101, not only improved the growth of acetate rejection condition hypothallus, and reduced the accumulation of acetate and improved expression efficiency (the microorganism journal of external source beta-galactosidase gene, 2001,41:223~228).Bacillus coli DH 5 alpha (the HanahanD of bibliographical information, J.Mol.Biol., 1983,166:557~580) owing to its transformation efficiency height, be one of host bacterium the most frequently used in the genetically engineered, yet compare with some other coli strain, DH5 α consumption of glucose in minimum medium is slow, energy for growth is poor, and very responsive to acetate, be difficult for realizing high-density culture, so there is more problem in the high-density culture of DH5 α.
Summary of the invention
One of technical issues that need to address of the present invention are the mutant strains of anti-acetate that discloses a kind of bacillus coli DH 5 alpha, to overcome the above-mentioned defective that prior art exists;
Two of the technical issues that need to address of the present invention provide the selection of described mutant strain.
Design of the present invention is such:
DH5 α is carried out mutagenesis, and its mutant strain of anti-acetate of seed selection under the condition that has acetate inhibition pressure is to improve the expression of exogenous gene level.
Bacillus coli DH 5 alpha is a kind of bacterial classification that colon bacillus belongs to that belongs to, DH5 α is carried out mutagenesis or utilizes its spontaneous mutation, under the condition that has acetate inhibition pressure, carry out seed selection, can obtain the said mutant strain of anti-acetate of the present invention (Escherichia coli) DA19.This bacterial classification on June 6th, 2003 in China Committee for Culture Collection of Microorganisms's preservation, preserving number is CGMCC No.0941.
This bacterial classification has following characteristic:
This bacterial classification is identical with size with the bacterium DH5 α colony shape that sets out; The same glucose, glycerine, the sodium acetate of can utilizing with the bacterium that sets out is carbon source, can not utilize lactose, sucrose, starch as carbon source, and be identical with the nutritional needs of the bacterium DH5 α that sets out, is vitamins B
1The nutritional needs type; The plasmid pUC18 or the pUC19 that will contain the beta-galactosidase gene of lacZ promotor and regulation and control thereof change in the cell, show blue look, the same α-Hu Bu phenomenon that still exists with the bacterium that sets out at the LB medium agar flat-plate bacterial colony that contains IPTG and X-gal.
1. morphological specificity:
(1) form of cell and size: shaft-like, 0.5~3 μ m.
(2) formation of sporozoite: can not form spore.
(3) gramstaining: feminine gender.
2. the growth conditions on various substratum:
(1) the LB agar plate is cultivated (30 ℃, 48 hours)
Colony shape: circular (Circular), level and smooth (Smooth), expansion (Spread)
Size: 1~3mm;
Tone: ivory buff.
(2) the LB agar slant is cultivated (30 ℃, 24 hours)
Well-grown, lawn smooth (Smooth).
(3) LB liquid culture (30 ℃, 10 hours)
Well-grown, the nutrient solution muddiness, placing for some time can sedimentation (Sediment).
(4) generate ammonia by peptone: the positive;
(5) to the demand of oxygen: amphimicrobian;
(6) generate acid by sugar
Positive: glucose, glycerine, fructose;
Negative: sucrose, lactose;
(7) growth pH scope: 6.0~8.0;
(8) growth optimal temperature: 28~37 ℃;
(9) nutritional needs type test: vitamins B
1Auxotrophy.
The method that above-mentioned characteristic can adopt the outstanding Bacteria Identification handbook of uncle (Bergey ' s Manual ofDeterminative Bacteriology) to introduce is differentiated, mutant strain DA19 of the present invention is that with the difference of the bacterium DH5 α maximum of setting out its anti-acetate ability is strong, the cell concentration of growing in containing the minimum medium of acetate is much higher than its bacterium DH5 α that sets out, and is the thalline yield Y of benchmark with the glucose that consumes
X/GBe more than 2 times of bacterium DH5 α that set out.
The selection of the mutant strain of the anti-acetate DA19 of bacillus coli DH 5 alpha of the present invention in turn includes the following steps:
(1) DH5 α bacterial classification is cultivated, obtained DH5 α bacterium liquid;
(2) use
60Co carries out radiation to DH5 α bacterium liquid, and dosage is 200-900Gy;
(3) be that seed carries out batch culture to the DH5 α bacterium liquid after the radiation, incubation time 16-40h;
(4) cultured continuously progressively improves thinning ratio in the culturing process, be lower than 0.10h with initial thinning ratio
-1, final thinning ratio is higher than 0.3h
-1Fed-batch medium A, final OD
600Be not less than 0.3;
(5) continue cultured continuously, progressively improve thinning ratio in the culturing process, with initial thinning ratio 0.05-0.12h
-1, final thinning ratio is not less than 0.25h
-1Fed-batch medium B;
(6) carry out single bacterium colony with the minimum medium flat board that contains glucose and acetate after cultured continuously finishes and separate, can seed selection arrive bacterial classification of the present invention;
Said culture medium A or B are carbon source with glucose, and A contains the acetate of 50-70mmol/L and the peptone of 5g/L, and B contains the acetate of 100-150mmol/L and the peptone of 2.5g/L.Preferred acetate is a kind of in sodium salt, sylvite or the ammonium salt of acetate, changes to avoid directly adding the pH that acetate causes.
According to optimized technical scheme of the present invention,, use once more the nutrient solution after the fed-batch medium B end
60Co carries out radiation, and adopts the method for step (3), (4), (5) and (6) to cultivate, so that the anti-acetate ability of the bacterial classification that is obtained further to be provided.
Bacterial classification of the present invention can be used for expression alien gene.
The advantage of the mutant bacteria of anti-acetate of DH5 α of the present invention is that growth vigor is obvious, also reduces in the generation of acetate simultaneously of anti-acetate ability enhanced, realizes high-density culture easily, and exogenous gene expression efficient improves.
In order to understand content of the present invention better, be described further by following examples.
Embodiment
Embodiment 1
DH5 α bacterial classification one ring that the picking inclined-plane is preserved, [1L contains 30mL YPS substratum in the access 250mL Erlenmeyer flask: Tryptone (Britain Oxiod company) 10g, yeast extract (Britain Oxiod company) 5g, NaCl 10g, pH7.2], 30 ℃, 250r/min shaking table overnight incubation gets first order seed, in the 30mL YPS substratum, the same terms is cultivated 10h as secondary seed to switching first order seed 1mL in the 250mL Erlenmeyer flask.Get secondary seed 10ml in the centrifugal 15min of 5000rpm, abandon supernatant, add the 10ml stroke-physiological saline solution, mixing is with dosage 700Gy's
60Behind the Co radiation 40min, [1L contains 250ml MY substratum: yeast extract (Britain Oxiod company) 4g, glucose 2g, Na in the access 500mL micro glass reactor
2HPO
412H
2O15.12g, KH
2PO
43g, NaCl 0.5g, NH
4Cl 1g, MgSO
47H
2O 0.5g, CaCl
20.011g, 1% vitamins B
10.2mL, glucose 1.8g, Polypepton (big five nutrition of Japan) 5g, sodium acetate 5g, pH7.0], extract nutrient solution simultaneously out.Progressively improve thinning ratio in the cultured continuously, reach 0.351h during 180h
-1, OD
600Nm reaches 0.393.The substratum that add stream this moment switches to substratum B[1L and contains: glucose 1.6g, Polypepton2.5g, sodium acetate 10g, pH7.0, inorganic salt and vitamins B
1Identical with culture medium A], thinning ratio drops to 0.1h
-1, proceed cultured continuously.Progressively improve thinning ratio in the culturing process, 310h reaches 0.263h
-1Get the final nutrient solution in the reactor, suitable dilution is coated with the MAA flat board and [contains glucose 2g among the 1L, sodium acetate 5g, agar 20g, inorganic salt and vitamins B
1Identical with culture medium A], bacterium colony is occurred containing the 5g/L sodium acetate than morning and big single bacterium colony carrying out further anti-acetate ability evaluation, glucose concn is [to contain inorganic salt and vitamins B among the 1L in the 2.2g/L MA substratum
1Identical with culture medium A] shake-flask culture 16h, seed selection to mutant strain DA series see Table 1 with DH5 α cultivation results, as shown in Table 1, mutant strain DA series is because the increase of anti-acetate ability, the cell concentration of growing in the MA substratum is much higher than its bacterium DH5 α that sets out, and is the thalline yield Y of benchmark with the glucose that consumes
X/GImproved more than 2 times.
Table 1
Strain name DH5 α DA19 DA42 DA50 DA52 DA53
Cell concn/(g/L) 0.178 0.517 0.499 0.492 0.466 0.481
Y
X/G a/(g/g) 0.063 0.216 0.207 0.204 0.191 0.199
When the cultured continuously of fed-batch medium B finishes among the embodiment 1, get nutrient solution 10ml, use dosage 700Gy
60Co is irradiation once more, carries out cultured continuously again, and method is with embodiment 1, but fed-batch medium C[1L contains: glucose 1.6g, sodium acetate 10g, pH7.0, inorganic salt and vitamins B
1Identical with culture medium A], initial thinning ratio is 0.082h
-1, progressively improving thinning ratio, 176h reaches 0.158h
-1, this moment OD
600Nm is 0.030, finishes cultured continuously.Get the final nutrient solution in the reactor, suitably dilution is coated with MAB flat board [sodium acetate 10g among the 1L, other component content is identical with the MAA flat board], and choosing colony occurs early and big single bacterium colony.Containing the 10g/L sodium acetate, glucose concn is [to contain inorganic salt and vitamins B among the 1L in the 5g/L MA substratum
1Identical with culture medium A] shake-flask culture 20h, seed selection to mutant strain DB series and embodiment 1 in the cultivation results of the DA19 that obtains see Table 2, because the anti-acetate ability of mutant strain DB series further strengthens, the cell concentration of growing in the MA substratum is the thalline yield Y of benchmark than DA19 height with the glucose that consumes
X/GAlso increase.
Table 2
Strain name DA19 DB1 DB7 DB8 DB15 DB18
Cell concn/(g/L) 0.330 0.449 0.440 0.494 0.503 0.465
Y
X/G a/(g/g) 0.124 0.131 0.136 0.142 0.152 0.151
Embodiment 3
DH5 α that will cultivate as method as described in the embodiment 1 and DA19 first order seed are transferred 1mL respectively in two 500mL Erlenmeyer flasks in the 100mL YPS substratum, and the same terms is cultivated the secondary seed of 10h as fermentor cultivation.Secondary seed is inoculated in the M substratum of 5L fermentor tank respectively, and [amount that contains glucose among the 1L sees Table 3, inorganic salt and vitamins B
1Content identical with culture medium A among the embodiment 1], inoculation back volume 3.2L, 30 ℃, mixing speed and air flow are adjusted according to the variation of dissolved oxygen, more than 20%, control pH6.9~7.0 generate situation with growth and the acetate of investigating in minimum medium with dissolved oxygen in the process that guarantees to cultivate, cultivation results sees Table 3, wherein Y
X/GBe to be the thalline yield of benchmark with the glucose that consumes, Y
A/XIt is the product acetate yield of unit thalline.As shown in Table 3, in minimum medium, the growth of DA19 improves greatly, Y
X/GBe much higher than the bacterium DH5 α that sets out, can reach higher cell concentration.
Table 3
The initial DH5 α DA19 of Portugal
The dense bacterium of grape sugar is dense
1Acetate
1Y
A/X 1,2Y
X/G 1Bacterium is dense
1Acetate
1Y
A/X 1,2Y
X/G 1
Degree/(g/L)/(mmol/)/(mmol/(g/g)/(g/L)/(mmol/L)/(mmol/L (g/g)
g/L) L) /g) g)
2
3 0.454 3.65 8.04 0.203 0.890 1.89 2.63 0.404
10
3 0.468 3.74 8.52 0.050 1.97 19.5 9.89 0.192
10
4,5 - - - - 4.14 4.84 1.17 0.404
102
4,593.2 3.56 0.2571. of----26.2 are peak value; 2. be that the maximum time unit of acetic acid concentration thalline produces the acetate yield; 3. regulate pH with 2mol/LNaOH; 4. use 1mol/L NH
3H
2O regulates pH; 5.1L [1L trace element mixing solutions contains FeSO to add 0.5mL trace element mixing solutions in the substratum
47H
2O 40g, MnSO
4NH
2O 10g, AlCl
36H
2O 10g, CoCl
24g, ZnSO
47H
2O 2g, Na
2MoO
42H
2O 2g, CuCl
22H
2O 1g, H
3BO
40.5g].
Embodiment 4
The plasmid that will have phoA promoter regulation Urogastron (EGF) genetic expression changes set out bacterium DH5 α and mutant bacteria DA19 over to, among the DB15, the secondary seed 1ml that cultivates as the described condition of embodiment 1 inserts 250ml respectively and shakes in the 30ml YPS10G substratum in the bottle [1L YPS substratum contains glucose 10g], 30 ℃, the 250r/min shaking table is cultivated, the centrifugal 10min of 12000rpm, detect the content of EGF in the supernatant liquor with electrophoresis method, Coomassie brilliant blue dyeing, the results are shown in Table 4, as shown in Table 4, the EGF (Y of the EFG level of the mutant strain of anti-acetate DA19 and DB15 expression and unit thalline expression
EGF/X) all be higher than DH5 α, show that the mutant strain of anti-acetate expression EGF efficient improves.
Table 4
Strains DH5α DA19 DB15
EGF/(mg/L) 3.98 7.54 5.72
Y
EGF/X/ (mg/g) mutant strain of the anti-acetate series growth of 4.04 6.22 5.68DH5 α improves, anti-acetate ability strengthens, the thalline yield improves, acetate produces minimizing in culturing process simultaneously, easily realize high-density culture, be used for expression alien gene efficient and improve.According to mutant bacteria disclosed by the invention and embodiment, relevant technologies personnel are the anti-acetate mutant strain of seed selection DH5 α easily, is applied in the production of highly dense fermentation and exogenous genes products.