CN1407096A - Polypeptide-ATP ase-36.41 relating to DNA repair and polynucleotide for encoding it - Google Patents

Abstract

A polypeptide-DNA repair associated adenosine triphosphate-36.41, the polynucleotide for coding it, the process for preparing said polypeptide by DNA recombination, the application of said polypeptide in treating diseases such as cancer, HIV infection, etc, the antagonist of said polypeptide and its medical action, and the application of said polynucleotide are disclosed.

Description

One peptide species---repair relevant adenosine triphosphatase-36.41 and the polynucleotide of this peptide species of encoding with DNA

Technical field

The invention belongs to biological technical field, specifically, the invention describes a kind of new polypeptide---repair relevant adenosine triphosphatase-36.41 with DNA, and the polynucleotide sequence of this polypeptide of encoding.The invention still further relates to the preparation method and the application of these polynucleotide and polypeptide.

Background technology

The ATP enzyme is the protein families of a high conservative, and it is the mixture that is made of multiple polypeptides, is a kind of membranin mixture, by a hydrophilic F ₁With a hydrophobic F ₀Form complete F ₁F ₀Mixture can hydrolysising ATP (Kagawa, Y.and Ohta, S.1990.Int.J.Biochem, 22,219-229).

Studies show that, repair relevant ATP enzyme with DNA and have vital role aspect the dna damage reparation.The genetics The Characteristics of this enzyme mutant body shows that the Methionin among its functional domain I is if replaced (K538R) by arginine, the ATP enzyme function of associated protein will be lost, the L-glutamic acid of the high conservative among its functional domain II is if substituted by glutamine, can make this enzyme lose its biological function, causing RNA to synthesize can't carry out, and destroys the gene specific injury repairing that is caused by uv irradiating.Thereby the cell survival of the integrity in ATP enzymatic structure territory after for uv irradiating or chemical carcinogen 4-NQO institute inductive dna damage is significant, this may be that cell can overcome by the caused reason of transcribing inhibition of dna adduct, and simultaneously this shows that also atpase activity repairs (TCR) and dependent/non-dependent and transcribe coupling to join the reparation approach all be essential for transcribing the coupling connection.(Robert?M.Brosh?Jr.，Adayabalam?S.Balajee，Molecular?Biology?of?the?Cell，1999，10(11)：3583-3594)

Repairing relevant ATP enzyme with DNA is to bring into play the function of DNA plerosis damage by the ATP hydrolysis, and active A MP is provided, and participates in generating phosphodiester bond, finishes reparation, and real substrate is MgATP in repair process ^2-(Oncogene, 2001,20 (24): 3076-85).Crystalline structure research and mutant analysis revealed, the functional domain I that repairs relevant ATP enzyme with DNA contains the significant sequence of NTP bonded---GSGKS, is responsible for combining with the triphosphoric acid afterbody of ATP.During the interaction of RNAPII, the β of ATP-γ phosphoric anhydride bonds is absolutely necessary on this albumen and the dna profiling.In addition, the hydrolysis of ATP also is essential for associated protein as transcriptional elongation factor, repair relevant ATP enzyme with DNA and can eliminate the ratio of transcribing damaged portion in the chain gradually by increasing the transcribing efficient of RNAPII, DNA shared ratio in overall of damage is dwindled, diluted by complete dna molecular after promptly duplicating several generations, thereby do not hinder the normal function of cell.(Robert?M.Brosh?Jr.，Adayabalam?S.Balajee，Molecular?Biology?of?the?Cell，1999，10(11)：3583-3594)

The adenosine triphosphatase-36.41 relevant with the DNA reparation of the present invention comprises above-mentioned functions territory and conserved sequence, can be with MgATP ^2-Be substrate, catalysis ATP hydrolysis releases energy and active A MP is provided group, thereby thinks that it is a kind ofly new to repair relevant ATP enzyme with DNA, has similar biological function with above-mentioned protein.If morph, can make this enzyme lose its biological function, cause that RNA is synthetic can't to carry out, and destroy cause by uv irradiating or chemical carcinogen 4-NQO institute inductive gene specific injury repairing, closely related with the generation of disease such as tumour.In addition, it also has certain effect in the diagnosis of relative disease and treatment.

Because repairing relevant adenosine triphosphatase-36.41 albumen with DNA as mentioned above plays an important role in the critical function in body, and believe and relate to a large amount of albumen in these regulate processes, thereby need to identify more these processes of participation in this area always repair relevant adenosine triphosphatase-36.41 albumen with DNA, particularly identify this proteic aminoacid sequence.Newly repair and provide the foundation for determining the effect of this albumen under healthy and morbid state separating also of relevant adenosine triphosphatase-36.41 protein coding gene with DNA.This albumen may constitute the basis of exploitation medical diagnosis on disease and/or curative, and it is very important therefore separating its coding DNA.

Summary of the invention

An object of the present invention is to provide isolating new polypeptide---with DNA repair relevant adenosine triphosphatase-36.41 with and fragment, analogue and derivative.

Another object of the present invention provides the polynucleotide of this polypeptide of coding.

Another object of the present invention provides the recombinant vectors of the polynucleotide that contain the coding adenosine triphosphatase-36.41 relevant with the DNA reparation.

Another object of the present invention provides the genetically engineered host cell of the polynucleotide that contain the coding adenosine triphosphatase-36.41 relevant with the DNA reparation.

Another object of the present invention provides the method for repairing relevant adenosine triphosphatase-36.41 with DNA of producing.

Another object of the present invention provides at polypeptide of the present invention---repair the antibody of relevant adenosine triphosphatase-36.41 with DNA.

Another object of the present invention has provided at polypeptide of the present invention---repair simulated compound, antagonist, agonist, the inhibitor of relevant adenosine triphosphatase-36.41 with DNA.

Another object of the present invention provides the method for the diagnoses and treatment disease relevant unusually with the adenosine triphosphatase-36.41 relevant with the DNA reparation.

The present invention relates to a kind of isolated polypeptide, this polypeptide is the people source, and it comprises: have＜polypeptide or its examples of conservative variations, bioactive fragment or the derivative of 210〉2 aminoacid sequences.Preferably, this polypeptide is to have＜polypeptide of 210〉2 aminoacid sequences.

The invention still further relates to a kind of isolating polynucleotide, it comprises a kind of nucleotide sequence or its variant that is selected from down group:

(a) coding has＜polynucleotide of the polypeptide of 210〉2 aminoacid sequences;

(b) with polynucleotide (a) complementary polynucleotide;

(c) with (a) or polynucleotide sequence (b) have the polynucleotide of at least 70% homogeny.

More preferably, the sequence of these polynucleotide is be selected from down group a kind of: (a) have＜210〉1 in the sequence of 152-1147 position; (b) have＜210〉1 in the sequence of 1-2165 position.

The present invention relates to a kind of carrier that contains polynucleotide of the present invention, particularly expression vector in addition; The host cell that this carrier of a kind of usefulness is genetically engineered comprises the host cell of conversion, transduction or transfection; A kind of method for preparing polypeptide of the present invention of cultivating described host cell and reclaiming expression product that comprises.

The invention still further relates to a kind of can with polypeptid specificity bonded antibody of the present invention.

The method that simulation, activation, antagonism or the inhibition that the invention still further relates to a kind of screening and DNA repair the compound of relevant adenosine triphosphatase-36.41 protein-active, it comprises and utilizes polypeptide of the present invention.The invention still further relates to the compound that obtains with this method.

The invention still further relates to a kind of vitro detection and repair the relevant disease of relevant adenosine triphosphatase-36.41 abnormal protein expression or the method for disease susceptibility with DNA, comprise the sudden change in polypeptide described in the detection of biological sample or its coded polynucleotide sequence, perhaps the amount or the biological activity of polypeptide of the present invention in the detection of biological sample.

The present invention also relates to a kind of pharmaceutical composition, it contains polypeptide of the present invention or its stand-in, activator, antagonist or inhibitor and pharmaceutically acceptable carrier.

The invention still further relates to polypeptide of the present invention and/or polynucleotide and be used for the treatment of cancer, developmental character disease or immunological disease or other purposes owing to the medicine of adenosine triphosphatase-36.41 disease that abnormal expression causes relevant with the DNA reparation in preparation.

Others of the present invention are because disclosing of the technology of this paper is conspicuous to those skilled in the art.

The following term of using in this specification sheets and claims has following implication unless stated otherwise: " nucleotide sequence " is meant oligonucleotide, Nucleotide or polynucleotide and fragment or part, also can refer to genome or synthetic DNA or RNA, they can be strand or two strands, represent sense strand or antisense strand.Similarly, term " aminoacid sequence " is meant oligopeptides, peptide, polypeptide or protein sequence and fragment or part.When " aminoacid sequence " among the present invention related to a kind of aminoacid sequence of naturally occurring protein molecule, this " polypeptide " or " protein " did not mean that aminoacid sequence are restricted to the complete natural amino acid relevant with described protein molecule.

Protein or polynucleotide " variant " are meant a kind of polynucleotide sequence that has the aminoacid sequence of one or more amino acid or Nucleotide change or encode it.Described change can comprise disappearance, insertion or the replacement of amino acid in aminoacid sequence or the nucleotide sequence or Nucleotide.Variant can have " conservative property " and change, and wherein the amino acid of Ti Huaning has structure or the chemical property similar with original acid, as replacing Isoleucine with leucine.Variant also can have non-conservation and change, as replacing glycine with tryptophane.

" disappearance " is meant the disappearance of in aminoacid sequence or nucleotide sequence one or more amino acid or Nucleotide.

" insertion " or " interpolation " is meant that the change in aminoacid sequence or nucleotide sequence causes comparing the increase of one or more amino acid or Nucleotide with naturally occurring molecule." replacement " is meant by different amino acid or Nucleotide and replaces one or more amino acid or Nucleotide.

" biological activity " is meant the protein of structure, regulation and control or biochemical function with natural molecule.Similarly, term " immunologic competence " be meant natural, reorganization or synthetic protein and fragment thereof in suitable animal or cell, induce specific immune response and with specific antibody bonded ability.

" agonist " be meant when with repair relevant adenosine triphosphatase-36.41 when combining with DNA, thereby a kind ofly cause that this protein change regulates the molecule of this protein active.Agonist can comprise protein, nucleic acid, carbohydrate or any other can be in conjunction with repairing the molecule of relevant adenosine triphosphatase-36.41 with DNA.

" antagonist " or " inhibition " be meant when with repair relevant adenosine triphosphatase-36.41 when combining, a kind of sealing or the biologic activity of the adenosine triphosphatase-36.41 that adjusting is relevant with the DNA reparation or the molecule of immunologic competence with DNA.Antagonist and inhibition can comprise protein, nucleic acid, carbohydrate or any other can be in conjunction with repairing the molecule of relevant adenosine triphosphatase-36.41 with DNA.

" adjusting " is meant that the function of the adenosine triphosphatase-36.41 relevant with the DNA reparation changes, and comprises rising or reduction, the change of binding characteristic and the change of repairing any other biological property, function or the immune property of relevant adenosine triphosphatase-36.41 with DNA of protein active.

The pure basically ＂ of ＂ is meant and is substantially free of natural relative other albumen, lipid, carbohydrate or other material.Those skilled in the art can repair relevant adenosine triphosphatase-36.41 with DNA with the purified technology of protein purifying of standard.Basically the pure adenosine triphosphatase-36.41 relevant with the DNA reparation can produce single master tape on the irreducibility polyacrylamide gel.Repair the purity available amino end acid sequence of relevant adenosine triphosphatase-36.41 polypeptide analyzes with DNA.

" complementary " or " complementation " is meant under salt concn that allows and temperature condition by the natural combination of the polynucleotide of base pairing.For example, sequence " C-T-G-A " can combine with complementary sequence " G-A-C-T ".Complementation between two single chain molecules can be part or whole.Complementary degree between the nucleic acid chains has a significant effect for efficient of hybridizing between the nucleic acid chains and intensity.

" homology " is meant the complementary degree, can be portion homologous or complete homology." portion homologous " is meant a kind of part complementary sequence, and it can partly suppress the hybridization of complete complementary sequence and target nucleic acid at least.The inhibition of this hybridization can detect by hybridizing (Southern trace or Northern trace etc.) under the condition that reduces in the severity degree.Basically homologous sequence or hybridization probe can compete and suppress complete homologous sequence and target sequence the condition that reduces of severity degree under combine.This does not mean the conditions permit non-specific binding that the severity degree reduces because the conditional request two sequences that the severity degree reduces mutual be combined into specificity or selectivity interacts.

" homogeny percentage " be meant two or more amino acid or nucleotide sequence relatively in the same or analogous percentage of sequence.The available electron method is measured the homogeny percentage, as passing through MEGALIGN program (Lasergene softwarepackage, DNASTAR, Inc., Madison Wis.).The MEGALIGN program can compare two or more sequences (Higgins, D.G. and P.M.Sharp (1988) Gene 73:237-244) according to diverse ways such as Cluster method.The Cluster method is organized the series arrangement cluster by checking the distance between all pairings with each.Then with each bunch with in pairs or become set of dispense.Homogeny percentage between two aminoacid sequences such as sequence A and the sequence B calculates by following formula:

Also can be by the Cluster method or with the homogeny percentage (Hein J., (1990) Methods in emzumology 183:625-645) between known method in this area such as the Jotun Hein mensuration nucleotide sequence.

" similarity " is meant the degree that the identical or conservative property of corresponding position amino-acid residue when arranging contrast between the aminoacid sequence replaces.For example be used for amino acid that conservative property replaces, electronegative amino acid can comprise aspartic acid and L-glutamic acid; Positively charged amino acid can comprise Methionin and arginine; Having uncharged head group has similar hydrophilic amino acid can comprise leucine, Isoleucine and Xie Ansuan; Glycine and L-Ala; L-asparagine and glutamine; Serine and Threonine; Phenylalanine and tyrosine.

" antisense " is meant and specific DNA or RNA sequence complementary nucleotide sequence." antisense strand " is meant and " sense strand " complementary nucleic acid chains.

" derivative " is meant HFP or encodes its chemical modification object of nucleic acid.This chemical modification object can be with alkyl, acyl group or the amino hydrogen atom of replacing.The nucleic acid derivative codified keeps the polypeptide of the main biological characteristics of natural molecule.

" antibody " is meant complete antibody molecule and fragment thereof, as Fa, F (ab ') ₂And Fv, its energy specificity is in conjunction with the antigenic determinant of the adenosine triphosphatase-36.41 relevant with the DNA reparation.

" humanized antibody " is meant that the aminoacid sequence in non-antigen binding domain territory is replaced and becomes more similar to people's antibody, but still keep original in active antibody.

" isolating " speech refers to material is shifted out among its original environment (for example, if spontaneous its natural surroundings that just refers to).Such as it is exactly not to be separated that spontaneous polynucleotide or polypeptide are present in the Live Animals, but same polynucleotide or polypeptide with some or all in natural system with it the material of coexistence separately be exactly isolating.Such polynucleotide may be the parts of a certain carrier, the part that also possible such polynucleotide or polypeptide are a certain composition.Since carrier or composition are not the compositions of its natural surroundings, they remain isolating.

As used herein, " isolating " are meant that material separates (if natural substance, primal environment promptly is a natural surroundings) from its primal environment.Do not have separation and purification as polynucleotide under the native state in the active somatic cell and polypeptide, but same polynucleotide or polypeptide as from native state with in other materials that exist separately, then for separation and purification.

As used herein, " isolating and DNA repair relevant adenosine triphosphatase-36.41 " is meant that repairing the adenosine triphosphatase-36.41 of being correlated with DNA is substantially free of natural relative other albumen, lipid, carbohydrate or other material.Those skilled in the art can repair relevant adenosine triphosphatase-36.41 with DNA with the purified technology of protein purifying of standard.Basically pure polypeptide can produce single master tape on non-reduced polyacrylamide gel.Repair the purity of relevant adenosine triphosphatase-36.41 polypeptide with DNA and can use amino acid sequence analysis.

The invention provides a kind of new polypeptide---repair relevant adenosine triphosphatase-36.41 with DNA, it is basically by＜210〉aminoacid sequence shown in 2 forms.Polypeptide of the present invention can be recombinant polypeptide, natural polypeptides, synthetic polypeptide, preferred recombinant polypeptide.Polypeptide of the present invention can be the product of natural purifying, or the product of chemosynthesis, or uses recombinant technology to produce from protokaryon or eucaryon host (for example, bacterium, yeast, higher plant, insect and mammalian cell).The host used according to the recombinant production scheme, polypeptide of the present invention can be glycosylated, maybe can be nonglycosylated.Polypeptide of the present invention also can comprise or not comprise initial methionine residues.

The present invention also comprises fragment, derivative and the analogue of repairing relevant adenosine triphosphatase-36.41 with DNA.As used herein, term " fragment ", " derivative " are meant that with " analogue " keeping of the present invention basically repairs relevant identical biological function or the active polypeptide of adenosine triphosphatase-36.41 with DNA.The fragment of polypeptide of the present invention, derivative or analogue can be: (I) a kind of like this, wherein one or more amino-acid residues are replaced by conservative or non-conservative amino acid residues (preferably conservative amino acid residues), and the amino acid that replaces can be also can not encoded by genetic codon; Perhaps (II) is a kind of like this, and certain group on wherein one or more amino-acid residues is replaced by other group and comprises substituting group; Perhaps (III) is a kind of like this, and wherein mature polypeptide and another kind of compound (such as the compound that prolongs the polypeptide transformation period, for example polyoxyethylene glycol) merge; Perhaps (IV) is a kind of like this, wherein additional aminoacid sequence is integrated into mature polypeptide and the peptide sequence that forms (as leader sequence or secretion sequence or be used for the sequence or the proteinogen sequence of this polypeptide of purifying) by the elaboration of this paper, such fragment, derivative and analogue are considered within those skilled in the art's ken.

The invention provides isolating nucleic acid (polynucleotide), substantially by coding have＜polynucleotide of the polypeptide of 210〉2 aminoacid sequences form.Polynucleotide sequence of the present invention comprises＜210〉1 nucleotide sequence.Polynucleotide of the present invention are to find from the cDNA library of people's fetal brain tissue.The polynucleotide sequence total length that it comprises is 2165 bases, its open reading frame 152-1147 87 amino acid of having encoded.This polypeptide has the characteristic sequence of MOTIF, and deducibility goes out this and repairs the 26S Proteasome Structure and Function that relevant adenosine triphosphatase-36.41 has the MOTIF representative with DNA.

Polynucleotide of the present invention can be dna form or rna form.Dna form comprises the DNA of cDNA, genomic dna or synthetic.DNA can be strand or double-stranded.DNA can be coding strand or noncoding strand.The coding region sequence of encoding mature polypeptide can be identical with the coding region sequence shown in＜210〉1 or the varient of degeneracy.As used herein, " varient of degeneracy " are meant that in the present invention coding has＜210〉2 protein or polypeptide, but with the differentiated nucleotide sequence of coding region sequence shown in＜210〉1.

The polynucleotide of the mature polypeptide of coding＜210〉2 comprise: the encoding sequence that has only mature polypeptide; The encoding sequence of mature polypeptide and various additional code sequence; Encoding sequence of mature polypeptide (with optional additional code sequence) and non-coding sequence.

Term " polynucleotide of coded polypeptide " is meant polynucleotide that comprise this polypeptide of encoding and the polynucleotide that comprise additional code and/or non-coding sequence.

The invention still further relates to the varient of foregoing description polynucleotide, its coding has the polypeptide of identical aminoacid sequence or segment, analogue and the derivative of polypeptide with the present invention.The varient of these polynucleotide can be the allelic variant of natural generation or the varient that non-natural takes place.These nucleotide diversity bodies comprise and replace varient, deletion mutation body and insert varient.As known in the art, allelic variant is the replacement form of polynucleotide, and it may be replacement, disappearance or the insertion of one or more Nucleotide, but can be from not changing the function of its encoded polypeptides in fact.

The invention still further relates to and the polynucleotide (have at least 50% between two sequences, preferably have 70% homogeny) of sequence hybridization described above.The present invention be more particularly directed under stringent condition and the interfertile polynucleotide of polynucleotide of the present invention.In the present invention, " stringent condition " is meant: (1) than hybridization under low ionic strength and the comparatively high temps and wash-out, as 0.2 * SSC, and 0.1%SDS, 60 ℃; Or (2) hybridization the time adds and to use denaturing agent, as 50% (v/v) methane amide, 0.1% calf serum/0.1%Ficoll, 42 ℃ etc.; Or (3) only at the homogeny between the two sequences at least more than 9 5%, be more preferably 97% and just hybridize when above.And, the polypeptide of interfertile polynucleotide encoding and＜210〉and the mature polypeptide shown in 2 has identical biological function and activity.

The invention still further relates to nucleic acid fragment with sequence hybridization described above.As used herein, " nucleic acid fragment " length contain 10 Nucleotide at least, better be 20-30 Nucleotide at least, be more preferably 50-60 Nucleotide at least, preferably more than at least 100 Nucleotide.Nucleic acid fragment also can be used for the amplification technique (as PCR) of nucleic acid to determine and/or to separate coding and repair the polynucleotide of relevant adenosine triphosphatase-36.41 with DNA.

Polypeptide among the present invention and polynucleotide preferably provide with isolating form, more preferably are purified to homogeneous.

Coding of the present invention can obtain with several different methods with the special polynucleotide sequence that DNA repairs relevant adenosine triphosphatase-36.41.For example, separate polynucleotide with hybridization technique well known in the art.These technology including, but not limited to: 1) with probe and genome or the hybridization of cDNA library to detect homologous polynucleotide sequence and 2) antibody screening of expression library to be to detect the polynucleotide passage of the clone with common structure feature.

Sequence dna fragment of the present invention also can obtain with following method: 1) separate double chain DNA sequence from genomic dna; 2) the chemical synthesising DNA sequence is to obtain the double-stranded DNA of described polypeptide.

In the above-mentioned method of mentioning, isolation of genomic DNA is least commonly used.The direct chemical of dna sequence dna is synthetic to be the method for often selecting for use.The more frequent method of selecting for use is the separation of cDNA sequence.The standard method that separates interested cDNA is from the donorcells separating mRNA of this gene of high expression level and carries out reverse transcription, forms plasmid or phage cDNA library.Extract the existing multiple proven technique of method of mRNA, test kit also can obtain (Qiagene) from commercial channels.And the construction cDNA library also is usual method (Sambrook, et al., MolecularCloning, A Laboratory Manual, Cold Spring Harbor Laboratory.New York, 1989).Also can obtain the cDNA library of commercial offers, as the different cDNA library of Clontech company.When being used in combination the polymeric enzyme reaction technology, even few expression product also can be cloned.

Available ordinary method is screened gene of the present invention from these cDNA libraries.These methods include, but is not limited to: (1) DNA-DNA or DNA-RNA hybridization; (2) appearance of marker gene function or forfeiture; (3) measure the level of repairing the transcript of relevant adenosine triphosphatase-36.41 with DNA; (4), detect the protein product of genetic expression by immunological technique or mensuration biologic activity.Aforesaid method can singly be used, but also several different methods combined utilization.

In (1) kind method, hybridizing used probe is and any a part of homology of polynucleotide of the present invention that at least 10 Nucleotide of its length better are at least 30 Nucleotide, are more preferably at least 50 Nucleotide, preferably at least 100 Nucleotide.In addition, within 2000 Nucleotide, preferable is within 1000 Nucleotide to the length of probe usually.Probe used herein is the dna sequence dna of chemosynthesis on the basis of gene order information of the present invention normally.Gene of the present invention itself or fragment are certainly as probe.The mark of dna probe can be used radio isotope, fluorescein or enzyme (as alkaline phosphatase) etc.

In (4) kind method, detect the protein product of adenosine triphosphatase-36.41 genetic expression relevant and can use immunological technique such as Western blotting, radioimmunoprecipitation, enzyme-linked immunosorbent assay (ELISA) etc. with the DNA reparation.

Use method (Saiki, the et al.Science1985 of round pcr DNA amplification/RNA; 230:1350-1354) be optimized for acquisition gene of the present invention.When particularly being difficult to from the library, obtain the cDNA of total length, can preferably use RACE method (the terminal rapid amplifying method of RACE-cDNA), the primer that is used for PCR can suitably be selected according to polynucleotide sequence information of the present invention disclosed herein, and available ordinary method is synthetic.Available ordinary method is as the DNA/RNA fragment by gel electrophoresis separation and purifying amplification.

The gene of the present invention that obtains as mentioned above, perhaps the polynucleotide sequence of various dna fragmentations etc. can with ordinary method such as dideoxy chain termination (Sanger et al.PNAS, 1977,74:5463-5467) measure.This class polynucleotide sequence is measured also available commercial sequencing kit etc.In order to obtain the cDNA sequence of total length, order-checking need be carried out repeatedly.Sometimes need to measure a plurality of clones' cDNA sequence, just can be spliced into the cDNA sequence of total length.

The present invention also relates to comprise the carrier of polynucleotide of the present invention, and with carrier of the present invention or directly use with DNA and repair the host cell of relevant adenosine triphosphatase-36.41 encoding sequence, and the method that produces polypeptide of the present invention through recombinant technology through the genetically engineered generation.

Among the present invention, coding can be inserted in the carrier with the polynucleotide sequence that DNA repairs relevant adenosine triphosphatase-36.41, contains the recombinant vectors of polynucleotide of the present invention with formation.Term " carrier " refers to that bacterial plasmid well known in the art, phage, yeast plasmid, vegetable cell virus, mammalian cell virus are as adenovirus, retrovirus or other carrier.The carrier of Shi Yonging includes but not limited in the present invention: and the expression vector based on the T7 promotor of in bacterium, expressing (Rosenberg, et al.Gene, 1987,56:125); The pMSXND expression vector of in mammalian cell, expressing (Lee and Nathans, J Bio Chem.263:3521,1988) and at the carrier that derives from baculovirus of expressed in insect cells.In a word, as long as can duplicate in host and stablize, any plasmid and carrier may be used to make up recombinant expression vector.A key character of expression vector is to contain replication origin, promotor, marker gene and translational control element usually.

Method well-known to those having ordinary skill in the art can be used to make up contain to encode repairs the dna sequence dna of relevant adenosine triphosphatase-36.41 and the expression vector of suitable transcribing/translational control element with DNA.These methods comprise (Sambroook, et al.MolecularCloning, a Laboratory Manual, cold Spring Harbor Laboratory.New York, 1989) such as extracorporeal recombinant DNA technology, DNA synthetic technology, the interior recombinant technologys of body.Described dna sequence dna can effectively be connected on the suitable promotor in the expression vector, and is synthetic to instruct mRNA.The representative example of these promotors has: colibacillary lac or trp promotor; The P of lambda particles phage _LPromotor; Eukaryotic promoter comprises LTRs and some other known may command gene expression promoter in prokaryotic cell prokaryocyte or eukaryotic cell or its virus of CMV immediate early promoter, HSV thymidine kinase promoter, early stage and late period SV40 promotor, retrovirus.Expression vector also comprises ribosome bind site that translation initiation is used and transcription terminator etc.Inserting enhancer sequence in carrier will make its transcribing in higher eucaryotic cells be enhanced.Enhanser is the cis acting factor that DNA expresses, and nearly 10 to 300 base pairs act on promotor transcribing with enhancing gene usually.Can for example be included in the SV40 enhanser of 100 to 270 base pairs of replication origin side in late period one, at the polyoma enhanser of replication origin side in late period one and adenovirus enhanser etc.

In addition, expression vector preferably comprises one or more selected markers, to be provided for selecting the phenotypic character of transformed host cells, cultivate Tetrahydrofolate dehydrogenase, neomycin resistance and the green fluorescent protein (GFP) of usefulness as eukaryotic cell, or be used for colibacillary tsiklomitsin or amicillin resistance etc.

Persons skilled in the art all know how to select appropriate carriers/transcriptional regulatory element (as promotor, enhanser etc.) and selected marker.

Among the present invention, the polynucleotide of the adenosine triphosphatase-36.41 that coding is relevant with DNA reparation or the recombinant vectors that contains these polynucleotide can transform or transduce into host cell, contain the genetically engineered host cell of these polynucleotide or recombinant vectors with formation.Term " host cell " refers to prokaryotic cell prokaryocyte, as bacterial cell; Or eukaryotic cell such as low, as yeast cell; Or higher eucaryotic cells, as mammalian cell.Representative example has: intestinal bacteria, streptomyces; Bacterial cell such as Salmonella typhimurium; Fungal cell such as yeast; Vegetable cell; Insect cell such as fruit bat S2 or Sf9; Zooblast such as CHO, COS or Bowes melanoma cells etc.

Can carry out with routine techniques well known to those skilled in the art with dna sequence dna of the present invention or the recombinant vectors transformed host cell that contains described dna sequence dna.When the host was prokaryotic organism such as intestinal bacteria, the competent cell that can absorb DNA can be used CaCl in exponential growth after date results ₂Method is handled, and used step is well-known in this area.Alternative is to use MgCl ₂If desired, transforming also the method for available electroporation carries out.When the host is an eukaryote, can select following DNA transfection method for use: coprecipitation of calcium phosphate method, perhaps conventional mechanical method such as microinjection, electroporation, liposome packing etc.

By the recombinant DNA technology of routine, utilize polynucleotide sequence of the present invention to can be used to express or produce reorganization repair relevant adenosine triphosphatase-36.41 (Science, 1984 with DNA; 224:1431).In general following steps are arranged:

(1). repair the polynucleotide (or varient) of relevant adenosine triphosphatase-36.41 with coding people of the present invention with DNA, or transform or the transduction proper host cell with the recombinant expression vector that contains these polynucleotide;

(2). in suitable medium, cultivate host cell;

(3). separation, protein purification from substratum or cell.

In step (2), according to used host cell, used substratum can be selected from various conventional substratum in the cultivation.Under the condition that is suitable for the host cell growth, cultivate.After host cell grows into suitable cell density, induce the promotor of selection with suitable method (as temperature transition or chemical induction), cell is cultivated for some time again.

In step (3), recombinant polypeptide can wrap and be expressed or be secreted into the extracellular in cell or on cytolemma.If desired, can utilize its physics, the separating by various separation methods with other characteristic and the albumen of purification of Recombinant of chemistry.These methods are well-known to those skilled in the art.These methods include, but are not limited to: conventional renaturation is handled, protein precipitant is handled (salt analysis method), centrifugal, the broken bacterium of infiltration, the combination of ultrasonication, super centrifugal, sieve chromatography (gel-filtration), adsorption chromatography, ion exchange chromatography, high performance liquid chromatography (HPLC) and other various liquid chromatography (LC) technology and these methods.

The antagonist of polypeptide of the present invention and this polypeptide, agonist and inhibitor can be directly used in disease treatment, for example, can treat malignant tumour, adrenal gland defect, tetter, all kinds of inflammation, HIV infection and immunological disease etc.

The albumen that contains ATP enzymatic structure territory has vital role aspect the dna damage reparation.The genetics The Characteristics of ATP enzyme mutant body shows that the Methionin among its functional domain I is if replaced (K538R) by arginine, the ATP enzyme function of associated protein will be lost, the L-glutamic acid of the high conservative among its functional domain II is if substituted by glutamine, can make its biological function of proteins lose that contains this ATP enzymatic structure territory, causing RNA to synthesize can't carry out, and destroys the gene specific injury repairing that is caused by uv irradiating.

Thereby the cell survival of the integrity in ATP enzymatic structure territory after for uv irradiating or chemical carcinogen 4-NQO institute inductive dna damage is significant, this may be that cell can overcome by the caused reason of transcribing inhibition of dna adduct, and simultaneously this shows that also atpase activity repairs (TCR) and dependent/non-dependent and transcribe coupling to join the reparation approach all be essential for transcribing the coupling connection.The abnormal expression of this characteristic sequence will cause, and then cause relevant disease

The new polypeptide of the present invention has the homology and the similarity of height with the ATP enzyme on structure and function, and also contain above-mentioned conservative characteristic sequence template in the aminoacid sequence.The new polypeptide of the present invention has the physiologically active similar with the ATP enzyme.The abnormal expression of above-mentioned distinctive conserved sequence will cause the dysfunction that contains the new polypeptide of this motif of the present invention, thereby cause the unusual of DNA reparation, and then cause relevant disease such as tumour, diseases such as fetal development disorder.

The fetal development disorder:

Spina bifida, the cranium fissure, anencephalia, the brain bulging, the hole deformity of brain, congenital hydrocephalus, the aqueduct deformity, achondroplastic dwarf's disease, spondyloepiphyseal dysplasia disease, the Langer-Giedion syndromes, hypogenitalism, epispadia, cryptorchidism, with malformation syndrome of short and small stature such as Conradi syndromes and Danbolt-Closs syndromes, congenital glaucoma or cataract, congenital little fissura palpebrae, retinal development is unusual, atrophia nervi optici congenita, ulcuscuris, monster, the Williams syndromes, the Alagille syndromes, shellfish syndrome Weis two

The tumour of various tissues:

Cancer of the stomach, liver cancer, lung cancer, the esophageal carcinoma, mammary cancer, leukemia, lymphoma, thyroid tumor, hysteromyoma, neuroblastoma, astrocytoma, ependymoma, glioma, colorectal carcinoma, malignant histocytosis, melanoma, teratoma, sarcoma, adrenal carcinoma, bladder cancer, osteocarcinoma, osteosarcoma, myelomatosis, bone marrow cancer, the cancer of the brain, uterus carcinoma, carcinoma of endometrium, carcinoma of gallbladder, thymus neoplasms, nasal cavity and tumor of sinus of nose, nasopharyngeal carcinoma, laryngocarcinoma, tracheal neoplasm, mesothelioma of pleura, fibroma, fibrosarcoma, lipoma, liposarcoma, leiomyoma etc.

Comprehensively above-mentioned, the antagonist of polypeptide of the present invention and this polypeptide, agonist and inhibitor can be directly used in the diagnosis and treatment of multiple disease, for example spina bifida, cranium fissure, anencephalia, lung cancer, the esophageal carcinoma, mammary cancer etc.

The present invention also provides SCREENED COMPOUND to identify the method for the medicament that improves (agonist) or check (antagonist) adenosine triphosphatase-36.41 relevant with the DNA reparation.Agonist improves the adenosine triphosphatase-36.41 relevant with DNA reparation biological function such as stimulate cellular proliferation, and antagonist prevention disorder such as the various cancer relevant with cell hyperproliferation with treatment.For example, can in the presence of medicine, mammalian cell or expression be cultivated with the adenosine triphosphatase-36.41 relevant with the DNA reparation of mark with the film preparation that DNA repairs relevant adenosine triphosphatase-36.41.Measure the medicine raising then or check this interactional ability.

The antagonist of repairing relevant adenosine triphosphatase-36.41 with DNA comprises antibody, compound, acceptor disappearance thing and the analogue etc. that filter out.The antagonist of repairing relevant adenosine triphosphatase-36.41 with DNA can combine and eliminate its function with the adenosine triphosphatase-36.41 relevant with the DNA reparation, or suppress the generation of this polypeptide, or combine with the avtive spot of this polypeptide and to make this polypeptide can not bring into play biological function.

In screening during as the compound of antagonist, can repair relevant adenosine triphosphatase-36.41 with DNA and add in the bioanalysis mensuration, determine by interactional influence between the mensuration compound pair adenosine triphosphatase-36.41 relevant and its acceptor whether compound is antagonist with the DNA reparation.With the same quadrat method of above-mentioned SCREENED COMPOUND, can filter out the acceptor disappearance thing and the analogue of antagonist action.Can with repair relevant adenosine triphosphatase-36.41 bonded peptide molecule with DNA and can be incorporated into the rondom polypeptide storehouse that solid formation forms by the various amino acid that may make up and obtain by screening.During screening, general reply is repaired relevant adenosine triphosphatase-36.41 molecule with DNA and is carried out mark.

The invention provides and use polypeptide, and fragment, derivative, analogue or their cell are as the method for antigen with production antibody.These antibody can be polyclonal antibody or monoclonal antibody.The present invention also provides at repairing the antibody of relevant adenosine triphosphatase-36.41 antigenic determinant with DNA.These antibody include, but is not limited to: the fragment that polyclonal antibody, monoclonal antibody, chimeric antibody, single-chain antibody, Fab fragment and Fab expression library produce.

The production of polyclonal antibody method available and that DNA repairs relevant adenosine triphosphatase-36.41 direct injection immune animal (as rabbit, mouse, rat etc.) obtains, and multiple adjuvant can be used for enhancing immunity and reacts, and includes but not limited to freund's adjuvant etc.Preparation includes but not limited to hybridoma technology (Kohler and Milstein.Nature with the technology that DNA repairs the monoclonal antibody of relevant adenosine triphosphatase-36.41,1975,256:495-497), three knurl technology, people B-quadroma technology, EBV-hybridoma technology etc.With the variable region bonded chimeric antibody in human constant region and inhuman source can with existing technology production (Morrison etal, PNAS, 1985,81:6851).And the technology of existing manufacture order chain antibody (U.S.Pat No.4946778) also can be used for producing the single-chain antibody that resists the adenosine triphosphatase-36.41 relevant with the DNA reparation.

The antibody that anti-and DNA repair relevant adenosine triphosphatase-36.41 can be used in the immunohistochemistry technology, in the detection biopsy specimen with the relevant adenosine triphosphatase-36.41 of DNA reparation.

With repair the relevant also available labelled with radioisotope of adenosine triphosphatase-36.41 bonded monoclonal antibody with DNA, can follow the tracks of its position and distribution in the injection body.This radiolabeled antibody can be used as a kind of atraumatic diagnostic method and is used for the location of tumour cell and has judged whether transfer.

Antibody also can be used for designing the immunotoxin at a certain privileged sites in the body.As with DNA repair relevant adenosine triphosphatase-36.41 high-affinity monoclonal antibody can with bacterium or plant poison (as diphtheria toxin, ricin, abrine etc.) covalent attachment.A kind of usual method is with sulfydryl linking agent such as SPDP, attacks the amino of antibody, by the exchange of disulfide linkage, toxin is incorporated on the antibody, and this hybrid antibody can be used for killing with DNA repairs relevant adenosine triphosphatase-36.41 positive cells.

Antibody among the present invention can be used for treating or prevents and the adenosine triphosphatase-36.41 relevant disease relevant with the DNA reparation.The antibody that gives suitable dosage can stimulate or blocking-up and DNA repair the generation or the activity of relevant adenosine triphosphatase-36.41.

The invention still further relates to quantitatively and repair the diagnostic testing process of relevant adenosine triphosphatase-36.41 level with DNA with detection and localization.These tests are known in the art, and comprise that FISH measures and radioimmunoassay.That is detected in the test repairs relevant adenosine triphosphatase-36.41 level with DNA, can repair the relevant importance of adenosine triphosphatase-36.41 in various diseases with DNA with laying down a definition and repair the disease that relevant adenosine triphosphatase-36.41 works with being used to diagnose with DNA.

Polypeptide of the present invention also can be used as the peptide spectrum analysis, for example, the polypeptide available physical, chemistry or enzyme carry out the specificity cutting, and carries out the two-dimentional or three-dimensional gel electrophoresis analysis of one dimension, be more preferably and carry out mass spectroscopy.

Coding also can be used for multiple therapeutic purpose with the polynucleotide that DNA repairs relevant adenosine triphosphatase-36.41.Gene therapy technology can be used for treating owing to repair the nothing expression of relevant adenosine triphosphatase-36.41 or cell proliferation, growth or the metabolic disturbance due to unusual/non-activity expression with DNA.The gene therapy vector (as virus vector) of reorganization can be designed for express variation repair relevant adenosine triphosphatase-36.41 with DNA, to suppress endogenic and relevant adenosine triphosphatase-36.41 activity of DNA reparation.For example, a kind of adenosine triphosphatase-36.41 relevant with the DNA reparation of variation can be the adenosine triphosphatase-36.41 of being correlated with the DNA reparation that shortens, lacked signal conduction function territory, though can combine with the substrate in downstream, lacks signaling activity.Therefore the gene therapy vector of reorganization can be used for treating adenosine triphosphatase-36.41 expression relevant with the DNA reparation or the disease of active caused by abnormal.Deriving from viral expression vector such as retrovirus, adenovirus, adeno-associated virus (AAV), hsv, parvovirus etc. can be used for coding is transferred in the cell with the polynucleotide that DNA repairs relevant adenosine triphosphatase-36.41.The method of recombinant viral vector that structure carries the polynucleotide of the coding adenosine triphosphatase-36.41 relevant with DNA reparation be found in existing document (Sambrook, etal.).The polynucleotide of the adenosine triphosphatase-36.41 that the reorganization coding is relevant with the DNA reparation can be packaged in the liposome and be transferred in the cell in addition.

Polynucleotide import tissue or intracellular method comprises: directly be injected into polynucleotide in the in-vivo tissue; Or external by carrier (as virus, phage or plasmid etc.) earlier with the polynucleotide transfered cell in, again cell is transplanted in the body etc.

Inhibition repairs the oligonucleotide (comprising sense-rna and DNA) of relevant adenosine triphosphatase-36.41mRNA with DNA and ribozyme also within the scope of the invention.Ribozyme is the enzyme sample RNA molecule that a kind of energy specificity is decomposed specific RNA, and its mechanism of action is to carry out the endonuclease effect after ribozyme molecule and the hybridization of complementary target RNA-specific.The RNA of antisense and DNA and ribozyme can obtain with existing any RNA or DNA synthetic technology, as the technology widespread use of solid phase phosphoamide chemical synthesis synthetic oligonucleotide.Antisense rna molecule can be transcribed acquisition by the dna sequence dna of this RNA that encodes in external or body.This dna sequence dna has been incorporated into the downstream of rna polymerase promoter of carrier.In order to increase the stability of nucleic acid molecule, available several different methods is modified it, and as increasing the sequence length of both sides, the connection between the ribonucleoside is used phosphoric acid thioester bond or peptide bond but not phosphodiester bond.

The polynucleotide that coding and DNA repair relevant adenosine triphosphatase-36.41 can be used for the diagnosis with the relative disease of the adenosine triphosphatase-36.41 of being correlated with the DNA reparation.The polynucleotide that coding and DNA repair relevant adenosine triphosphatase-36.41 can be used for detecting repair relevant adenosine triphosphatase-36.41 with DNA expression whether or the unconventionality expression of the adenosine triphosphatase-36.41 of under morbid state, being correlated with the DNA reparation.Can be used for biopsy specimen is hybridized the expression situation of repairing relevant adenosine triphosphatase-36.41 with DNA to judge with the dna sequence dna that DNA repairs relevant adenosine triphosphatase-36.41 as coding.Hybridization technique comprises the Southern blotting, Northern blotting, in situ hybridization etc.These technological methods all are disclosed mature technologies, and relevant test kit all can obtain from commercial channels.Part or all of polynucleotide of the present invention can be used as probe stationary on microarray (Microarray) or DNA chip (being called " gene chip " again), is used for analyzing the differential expression analysis and the gene diagnosis of tissue gene.Carry out the transcription product that RNA-polymerase chain reaction (RT-PCR) amplification in vitro also can detect the adenosine triphosphatase-36.41 relevant with the DNA reparation with repairing the special primer of relevant adenosine triphosphatase-36.41 with DNA.

The sudden change that detects adenosine triphosphatase-36.41 gene relevant with the DNA reparation also can be used for diagnosing with DNA repairs the relevant disease of relevant adenosine triphosphatase-36.41.Comprise that with form that DNA repairs relevant adenosine triphosphatase-36.41 sudden change to repair the relevant point mutation that adenosine triphosphatase-the 36.41DNA sequence is compared, transposition, disappearance, reorganization and other any unusually etc. with normal wild type and DNA.Available existing technology such as Southern blotting, dna sequence analysis, PCR and in situ hybridization detect sudden change.In addition, sudden change might influence proteic expression, therefore can judge indirectly that with Northern blotting, Western blotting gene has or not sudden change.

Sequence of the present invention identifies it also is valuable to karyomit(e).This sequence can be specifically at certain bar human chromosome particular location and and can with its hybridization.At present, need to identify the concrete site of each gene on the karyomit(e).Now, have only chromosomal marker thing seldom to can be used for the marker chromosomes position based on actual sequence data (repetition polymorphism).According to the present invention, for these sequences are associated with disease related gene, its important the first step is positioned these dna sequence dnas on the karyomit(e) exactly.

In brief, prepare PCR primer (preferred 15-35bp), sequence can be positioned on the karyomit(e) according to cDNA.Then, these primers are used for the somatocyte hybrid cell that the PGR screening contains each bar human chromosome.Have only those hybrid cells that contain corresponding to the people's gene of primer can produce the fragment of amplification.

The PCR localization method of somatocyte hybrid cell is that DNA is navigated to concrete chromosomal quick method.Use Oligonucleolide primers of the present invention,, can utilize one group to realize inferior location from specific chromosomal fragment or a large amount of genomic clone by similar approach.Other the similar strategy that can be used for chromosomal localization comprises in situ hybridization, uses the karyomit(e) prescreen and the hybridization preliminary election of the airflow classification of mark, thereby makes up the special cDNA storehouse of karyomit(e).

The cDNA clone is carried out fluorescence in situ hybridization (FISH) with Metaphase Chromosome, can in a step, accurately carry out chromosomal localization.The summary of this technology is referring to Verma etc., Human Chromosomes:a Manualof Basic Techniques, Pergamon Press, New york (1988).

In case sequence is positioned to chromosome position accurately, the physical location of this sequence on karyomit(e) just can be associated with the gene map data.These data for example are found in, V.Mckusick, Mendelian Inheritancein Man (can by with the online acquisition of Johns Hopkins University Welch Medical Library).Can pass through linkage analysis then, determine gene and navigated to relation between the disease on the chromosomal region already.

Then, need to measure ill and not cDNA between diseased individuals or genome sequence difference.If observe certain sudden change in some or all of diseased individuals, and this sudden change is not observed in any normal individual, then this sudden change may be the cause of disease of disease.More ill and diseased individuals not is usually directed at first seek the variation of structure in the karyomit(e), as from the horizontal visible of karyomit(e) or use based on detectable disappearance of the PCR of cDNA sequence or transposition.Resolving power according to present physical mapping and assignment of genes gene mapping technology, being accurately positioned to the cDNA of the chromosomal region relevant with disease, can be a kind of (the supposing that 1 megabasse mapping resolving power and every 20kb are corresponding to a gene) between 50 to 500 potential Disease-causing genes.

Polypeptide of the present invention, polynucleotide and stand-in thereof, agonist, antagonist and inhibitor and suitable pharmaceutical carrier combination back can be used.These carriers can be water, glucose, ethanol, salt, damping fluid, glycerine and their combination.Composition comprises the polypeptide or the antagonist of safe and effective amount and carrier and the vehicle that does not influence effect of drugs.These compositions can be used as medicine and are used for disease treatment.

The present invention also provides medicine box or the test kit that contains one or more containers, and one or more medicinal compositions compositions of the present invention are housed in the container.With these containers, can have by the given indicative prompting of government authorities of making, using or selling medicine or biological products, the government authorities that this prompting reflects production, uses or sells permits it to use on human body.In addition, polypeptide of the present invention can be used in combination with other treatment compound.

Pharmaceutical composition can be with mode administration easily, as by in part, intravenously, intraperitoneal, intramuscular, subcutaneous, the nose or the route of administration of intracutaneous.Repair relevant adenosine triphosphatase-36.41 with DNA and come administration with the amount that treats and/or prevents concrete indication effectively.The amount and the dosage range that are applied to patient's the adenosine triphosphatase-36.41 relevant with the DNA reparation will depend on many factors, as administering mode, person's to be treated healthiness condition and diagnostician's judgement.

Description of drawings

Following accompanying drawing is used to illustrate specific embodiments of the present invention, and is not used in qualification by the scope of the invention that claims defined.

Fig. 1 is the polyacrylamide gel electrophoresis figure (SDS-PAGE) that isolating and DNA repair relevant adenosine triphosphatase-36.41.36.41kDa be proteinic molecular weight.The arrow indication is isolated protein band.

Embodiment

Below in conjunction with specific embodiment, further set forth the present invention.Should be understood that these embodiment only to be used to the present invention is described and be not used in and limit the scope of the invention.The experimental technique of unreceipted actual conditions in the following example, usually according to people such as normal condition such as Sambrook, molecular cloning: laboratory manual (New York:Cold Spring HarborLaboratory Press, 1989) condition described in, or the condition of advising according to manufacturer.Embodiment 1: the clone of the adenosine triphosphatase-36.41 relevant with the DNA reparation

Extract the total RNA of people's tire brain with guanidinium isothiocyanate/phenol/chloroform single stage method.From total RNA, separate poly (A) mRNA with Quik mRNA Isolation Kit (Qiegene company product).2ug poly (A) mRNA forms cDNA through reverse transcription.CDNA fragment orientation is inserted on the multiple clone site of pBSK (+) carrier (Clontech company product) with Smart cDNA clone's test kit (available from Clontech), transforms DH5 α, bacterium forms the cDNA library.Measure all clones' 5 ' and 3 ' terminal sequence with Dyeterminate cycle reaction sequencing kit (Perkin-Elmer company product) and ABI 377 automatic sequencers (Perkin-Elmer company).CDNA sequence and the existing public dna sequence data storehouse (Genebank) measured are compared, found that the cDNA sequence of one of them clone 3505e09 is new DNA.By synthetic a series of primers the contained insertion cDNA fragment of this clone is carried out two-way mensuration.The result shows, the contained full-length cDNA of 3505e09 clone is 2165bp (as＜210〉1 shown in), from 152bp to 1147bp the open reading frame (ORF) of a 264bp arranged, the new protein of encoding (as＜210〉2 shown in).We are with this clone's called after pBS-3505e09, and encoded protein matter called after is repaired relevant adenosine triphosphatase-36.41 with DNA.Embodiment 2:cDNA clone's domain analyses

Of the present invention and DNA are repaired the sequence and the encoded protein sequence thereof of relevant adenosine triphosphatase-36.41, with the profile scan program among the GCG (Basiclocal Alignment search tool) [Altschul, SF etal.J.Mol.Biol.1990; 215:403-10], carry out domain analyses at databases such as prosite.Of the present invention and DNA repair relevant adenosine triphosphatase-36.41 and contain ATP enzymatic structure territory homology, and homology the results are shown in Fig. 1, and homology is 20%, must be divided into 9.59; Threshold value is 9.09.Embodiment 3: repair the gene of relevant adenosine triphosphatase-36.41 with RT-PCR method clones coding with DNA

Total RNA is a template with fetus brain cell, is that primer carries out the synthetic cDNA of reverse transcription reaction with oligo-dT, with behind the test kit purifying of Qiagene, carries out pcr amplification with following primer:

Primer1：5’-CATCCTGAGAACTGAAATTGATCGC-3’ (<210>3)

Primer2：5’-ATAAAATTTTTGAATTTATGTTCAA-3’ (<210>4)

Primer1 for to be positioned at＜the forward sequence that begins of 1bp of 210〉15 ' end;

Primer2 be＜210〉1 in 3 ' end reverse sequence.

The condition of amplified reaction: in the reaction volume of 50 μ l, contain 50mmol/L KCl, 10mmol/LTris-Cl, (pH8.5), 1.5mmol/L MgCl ₂, 200 μ mol/L dNTP, 10pmol primer, the Taq archaeal dna polymerase of 1U (Clontech company product).Go up by 25 cycles of following conditioned response at PE9600 type DNA thermal cycler (Perkin-Elmer company): 94 ℃ of 30sec; 55 ℃ of 30sec; 72 ℃ of 2min.When RT-PCR, establish the blank negative contrast of positive contrast of β-actin and template simultaneously.Amplified production is connected to (Invitrogen company product) on the pCR carrier with the test kit purifying of QIAGEN company with TA clone test kit.The dna sequence analysis result shows the dna sequence dna and＜210 of PCR product〉1-2165bp shown in 1 is identical.Embodiment 4:Northern blotting is analyzed with DNA and is repaired relevant adenosine triphosphatase-36.41 expression of gene:

Extract total RNA[Anal.Biochem 1987,162,156-159 with single stage method].This method comprises acid guanidine thiocyanate phenol-chloroform extracting.Promptly use 4M guanidinium isothiocyanate-25mM Trisodium Citrate, 0.2M sodium acetate (pH4.0) carries out homogenate to tissue, adds the phenol of 1 times of volume and the chloroform-primary isoamyl alcohol (49: 1) of 1/5 volume, and is centrifugal after mixing.The sucking-off aqueous phase layer adds Virahol (0.8 volume) and with the centrifugal RNA precipitation that obtains of mixture.With RNA precipitation 70% washing with alcohol that obtains, dry and soluble in water.With 20 μ g RNA, on 1.2% sepharose that contains 20mM 3-(N-morpholino) propanesulfonic acid (pH7.0)-5mM sodium acetate-1mM EDTA-2.2M formaldehyde, carry out electrophoresis.Be transferred on the nitrocellulose filter then.With α- ³²P dATP prepares by random priming ³²The dna probe of P-mark.Used dna probe be pcr amplification shown in Figure 1 repair relevant adenosine triphosphatase-36.41 coding region sequence (152bp to 1147bp) with DNA.Probe (about 2 * 10 with the 32P-mark ⁶Cpm/ml) spend the night in 42 ℃ of hybridization in a solution with the nitrocellulose filter that has shifted RNA, this solution comprises 50% methane amide-25mM KH ₂PO ₄(pH7.4)-5 * SSC-5 * Denhardt ' s solution and 200 μ g/ml salmon sperm DNAs.After the hybridization, filter membrane is washed 30min in 55 ℃ in 1 * SSC-0.1%SDS.Then, analyze with quantitative with Phosphor Imager.Embodiment 5: reorganization and DNA repair relevant adenosine triphosphatase-36.41 vivoexpression, separate and purifying

According to＜210〉1 and coding region sequence shown in Figure 1, design a pair of specificity amplification primer, sequence is as follows:

Primer3：5’-CCCCATATGATGCTCTGTCACCTTCAAAGGATGG-3’(<210>5)

Primer4：5’-CCCAAGCTTCTTCAACATGCCGCTTCTGTTCTTC-3’(<210>6)

5 ' end of these two sections primers contains NheI and BamHI restriction enzyme site respectively, be respectively the encoding sequence of target gene 5 ' end and 3 ' end thereafter, NheI and BamHI restriction enzyme site are corresponding to expression vector plasmid pET 28b (+) (Novagen company product, Cat.No.69865.3) the selectivity restriction enzyme site on.With the pBS-3505e09 plasmid that contains the total length goal gene is template, carries out the PCR reaction.The PCR reaction conditions is: contain pBS-3505e0.9 plasmid 10pg, primer Primer-3 and Primer-4 among the cumulative volume 50 μ l and be respectively l0pmol, Advantage polymerase Mix (Clontech company product) 1 μ l.Loop parameter: 94 ℃ of 20s, 60 ℃ of 30s, 68 ℃ of 2min, totally 25 circulations.Respectively amplified production and plasmid pET-28 (+) are carried out double digestion with NheI and BamHI, reclaim big fragment respectively, and connect with the T4 ligase enzyme.Connect product and transform, after the dull and stereotyped overnight incubation of the LB that contains kantlex (final concentration 30 μ g/ml), use the colony polymerase chain reaction (PCR) method screening positive clone, and check order with the big enterobacterial DH5 of Calcium Chloride Method α.Select the correct positive colony of sequence (pET-3505e09) with Calcium Chloride Method with recombinant plasmid transformed e. coli bl21 (DE3) plySs (Novagen company product).In the LB liquid nutrient medium that contains kantlex (final concentration 30 μ g/ml), host bacterium BL21 (pET-3505e09) is cultured to logarithmic phase at 37 ℃, adds IPTG to final concentration 1mmol/L, continues to cultivate 5 hours.Centrifugal collection thalline, through the broken bacterium of ultrasonic wave, centrifugal collection supernatant, with carrying out chromatography with 6 Histidines (6His-Tag) bonded affinity column His.Bind Quick Cartridge (Novagen company product), the target protein that has obtained purifying is repaired relevant adenosine triphosphatase-36.41 with DNA.Through the SDS-PAGE electrophoresis, obtain a single band (Fig. 2) at the 36.41kDa place.This band is transferred on the pvdf membrane carries out the n terminal amino acid sequential analysis with the Edams hydrolysis method, 15 amino acid of N-end are identical with 15 amino-acid residues of N-end shown in＜210〉2 as a result.Embodiment 6 resists and relevant adenosine triphosphatase-36.41 production of antibodies of DNA reparation

Repair the relevant specific polypeptide of adenosine triphosphatase-36.41 with Peptide synthesizer (PE company product) is synthetic following with DNA:

NH2-Met-Leu-Cys-His-Leu-Gln-Arg-Met-Val-Ser-Glu-Gln-Cys-His-Leu-COOH(<210>7)。Form compoundly with hemocyanin and bovine serum albumin coupling this polypeptide respectively, method is referring to Avrameas, et al.Immunochemistry, 1969; 6:43.Add the complete Freund's adjuvant immunizing rabbit with the above-mentioned hemocyanin polypeptide complex of 4mg, add the incomplete Freund's adjuvant booster immunization once with the hemocyanin polypeptide complex again after 15 days.Employing is done the titre that ELISA measures antibody in the rabbit anteserum through the titer plate of 15 μ g/ml bovine serum albumin polypeptide complex bag quilts.From the rabbit anteserum of antibody positive, separate total IgG with albumin A-Sepharose.Polypeptide is incorporated on the Sepharose4B post of cyanogen bromide-activated, from total IgG, separates anti-peptide antibody with affinity chromatography.Immuno-precipitation proof antibody purified can be specifically with repair relevant adenosine triphosphatase-36.41 with DNA and combine.Embodiment 7: polynucleotide passage of the present invention is as the application of hybridization probe

Picking out suitable oligonucleotide fragment from polynucleotide of the present invention is of use in many ways as hybridization probe, as can whether containing polynucleotide sequence of the present invention and detect the homologous polynucleotide sequence to identify it with the healthy tissues of different sources or the genome or the hybridization of cDNA library of pathological tissue with this probe, whether further also available this probe in detecting polynucleotide sequence of the present invention or the expression of its homologous polynucleotide sequence in healthy tissues or pathological tissue cell be unusual.

The purpose of present embodiment is from polynucleotide of the present invention＜210〉pick out suitable oligonucleotide fragment 1 as hybridization probe, and identify with the filter hybridization method whether some contain polynucleotide sequence of the present invention or its homologous polynucleotide sequence in organizing.The filter hybridization method comprises dot blotting, Southern blotting, Northern blotting and copy method etc., and they all are that polynucleotide sample to be measured is fixed on use essentially identical step crossover in back on the filter membrane.These identical steps are: the filter membrane of having fixed sample at first carries out prehybridization with the hybridization buffer that does not contain probe, so that nonspecific combining site suppressed by vector of sample and synthetic polymer institute are saturated on the filter membrane.Prehybridization solution is contained the hybridization buffer replacement of label probe then, and insulation makes probe and target nucleic acid hybridization.After the hybridization step, the probe in the hybridization is not removed by a series of film steps of washing.Present embodiment utilizes the film condition of washing (as than low salt concn and higher temperature) of higher-strength, so that hybrid context reduces and only keep the signal of high specificity.The probe that present embodiment is selected for use comprises two classes: first kind probe be fully with polynucleotide of the present invention＜210 1 identical or complementary oligonucleotide fragment; The second class probe is part and polynucleotide of the present invention＜210〉1 identical or complementary oligonucleotide fragment.Present embodiment selects for use dot blotting that sample is fixed on the filter membrane, higher-strength wash under the film condition, the hybridization specificity of first kind probe and sample is the strongest and kept.One, probe selects for use

From polynucleotide of the present invention＜210〉select 1 oligonucleotide fragment as hybridization probe, the several aspects that should follow following principle and need to consider: 1, the probe size preferable range is a 18-50 Nucleotide; 2, GC content is 30%-70%, and surpassing then, non-specific hybridization increases; 3, probe interior should not have complementary region; 4, what meet above condition can be used as the primary election probe, further do the computer sequential analysis then, comprise this primary election probe is carried out homology relatively with its source sequence area (promptly＜210〉1) and other known genome sequence and complementary district thereof respectively, if with the homology in non-target molecule zone greater than 85% or there are 15 continuous bases of surpassing identical, then this primary election probe is general just should not use; 5, whether the primary election probe finally is chosen to be the probe of actual application value also should further be determined by experiment.Select and synthetic following two probes after finishing the analysis of above each side:

Probe 1 (probe1) belongs to first kind probe, with＜210〉1 complete homology of gene fragment or complementation (41Nt):

5’-TGAATCCGGGAGGTGGAGCTTGCATTGAGCCGAGATTGCAC-3’(<210>8)

Probe 2 (probe2) belongs to the second class probe, is equivalent to＜210〉1 gene fragment or its complementary segmental replacement mutant nucleotide sequence (41Nt):

5’-TGAATCCGGGAGGTGGAGCTGGCATTGAGCCGAGATTGCAC-3’(<210>9)

Other unlisted common agents and the compound method thereof relevant with following concrete experimental procedure please refer to document: DNA PROBES G.H.Keller; M.M.Manak; Stockton Press, 1989 (USA) and molecular cloning laboratory manual books more commonly used are as works such as " molecular cloning experiment guide " (second edition in 1998) [U.S.] Sa nurse Brooker, Science Press.

Specimen preparation: 1, from fresh or frozen tissue, extract DNA

Step: 1) the fresh or fresh normal liver tissue that thaws is put into the plate that is immersed on ice and fills phosphate buffered saline buffer (PBS).With scissors or scalpel tissue is cut into small pieces.Should keep organizing moistening in the operation.2) with 1000g centrifugal chopper tissue 10 minutes.3) with cooled homogenate damping fluid (0.25mol/L sucrose; 25mmol/LTris-HCl, pH7.5; 25mmol/LnaCl; 25mmol/L MgCl ₂) precipitation that suspends (approximately 10ml/g).4) 4 ℃ with electric homogenizer homogenate tissue suspension at full speed, until tissue by broken fully.5) 1000g is centrifugal 10 minutes.6) with re-suspended cell precipitation (the initial tissue sample of every 0.1g adds 1-5ml), centrifugal 10 minutes again with 1000g.7) with the resuspended precipitation of lysis buffer (the initial tissue sample of every 0.1g adds 1ml), connect following phenol extraction process then.2, the phenol extraction process of DNA

Step: 1) wash cell, centrifugal 10 minutes of 1000g with the cold PBS of 1-10ml.2) with the sedimentary cell (1 * 10 of cold cell pyrolysis liquid resuspension ⁸The minimum of applications 100ul lysis buffer of cell/ml).3) adding SDS is 1% to final concentration, if before re-suspended cell SDS is directly joined in the cell precipitation, cell may form big agglomerate and be difficult to fragmentation, and the overall yield that reduces.This point is in extracting＞10 ⁷Especially severe during cell.4) add Proteinase K to final concentration 200ug/ml.5) 50 ℃ of insulation reaction 1 hour or 37 ℃ gently jolting spend the night.6) use equal-volume phenol: chloroform: primary isoamyl alcohol (25: 24: 1) extracting, in little centrifuge tube centrifugal 10 minutes.Two corresponding clear separation, otherwise carry out centrifugal again.7) water is transferred to new pipe.8) use the equal-volume chloroform: primary isoamyl alcohol (24: 1) extracting, centrifugal 10 minutes.9) water that will contain DNA is transferred to new pipe.Carry out purifying and the ethanol sedimentation of DNA then.3, the purifying of DNA and ethanol sedimentation

Step: 1) 1/10 volume 2mol/L sodium-acetate and 2 times of cold 100% ethanol of volume are added in the dna solution mixing.-20 ℃ of placements 1 hour or to spending the night.2) centrifugal 10 minutes.3) careful sucking-off or pour out ethanol.4) with 70% cold ethanol 500ul washing precipitation, centrifugal 5 minutes.5) careful sucking-off or pour out ethanol.With the cold washing with alcohol precipitation of 500ul, centrifugal 5 minutes.6) careful sucking-off or pour out ethanol is inverted on thieving paper then residual ethanol is flow to end.Dry air 10-15 minute, so that the volatilization of surperficial ethanol.Note not making the precipitation complete drying, otherwise dissolve again than difficulty.7) with small volume TE or the resuspended DNA precipitation of water.The low speed vortex vibrates or uses the dropper pressure-vaccum, increases TE gradually simultaneously, is mixed to DNA and fully dissolves, every 1-5 * 10 ⁶Cell extracted approximately adds 1ul.

Below the 8-13 step only be used for must removing when depolluting, otherwise can directly carry out the 14th step.8) RNA enzyme A is added in the dna solution, final concentration is 100ug/ml, and 37 ℃ are incubated 30 minutes.9) add SDS and Proteinase K, final concentration is respectively 0.5% and 100ug/ml.37 ℃ are incubated 30 minutes.10) use isopyknic phenol: chloroform: primary isoamyl alcohol (25: 24: 1) extractive reaction liquid, centrifugal 10 minutes.11) carefully shift out water, use isopyknic chloroform: primary isoamyl alcohol (24: 1) extracting again, centrifugal 10 minutes.12) carefully shift out water, add 1/10 volume 2mol/L sodium-acetate and the cold ethanol of 2.5 volumes, mixing put-20 ℃ 1 hour.13) with 70% ethanol and 100% washing with alcohol precipitation, dry air, resuspended nucleic acid, process is with the 3-6 step.14) measure A ₂₆₀And A ₂₈₀To detect purity and the productive rate of DNA.15) deposit in-20 ℃ after the packing.The preparation of sample film:

1) get 4 * 2 suitably nitrocellulose filters (NC film) of size, mark point sample position and sample number thereon gently with pencil, each probe needs two NC films, so that wash film with high strength condition and strength condition respectively in the experimental procedure of back.

2) draw and contrast respectively 15 microlitres, put on the sample film, dry at room temperature.

3) place infiltration that 0.1mol/LNaOH is arranged, last 5 minute of filter paper (twice) of 1.5mol/LNaCl, drying to place to soak into has 0.5mol/L Tris-HCl (pH7.0), last 5 minute of filter paper (twice) of 3mol/LNaCl, dries.

4) be sandwiched in the clean filter paper, wrap, 60-80 ℃ of vacuum-drying 2 hours with aluminium foil.

The mark of probe

1) 3 μ lProbe (0.1OD/10 μ l) add 2 μ lKinase damping fluids, 8-10uCi γ- ³²P-dATP+2UKinase is to add to final volume 20 μ l.

2) 37 ℃ are incubated 2 hours.

3) add the tetrabromophenol sulfonphthalein indicator (BPB) of 1/5 volume.

4) cross Sephadex G-50 post.

5) to having ³²Before washing out, P-Probe begins to collect first peak (available Monitor monitoring).

6) 5/pipe, collect the 10-15 pipe.

7) monitor isotopic weight with liquid glimmer instrument

8) merge and to be required preparation behind the collection liquid of first peak ³²P-Probe (second peak for free γ- ³²P-dATP).

Prehybridization

The sample film is placed plastics bag, and adding 3-10mg prehybridization solution (10 * Denhardt ' s; 6 * SSC, 0.1mg/mlCT DNA (calf thymus DNA).), seal sack after, 68 ℃ of water-baths were shaken 2 hours.

Hybridization

Plastics bag is cut off one jiao, adds the probe prepare, seal sack after, 42 ℃ of water-baths are shaken and are spent the night.

Wash film: high strength is washed film:

1) good sample film has been hybridized in taking-up.

2) 2 * SSC among the 0.1%SDS, washes 15 minutes (2 times) for 40 ℃.

3) 0.1 * SSC among the 0.1%SDS, washes 15 minutes (2 times) for 40 ℃.

4) 0.1 * SSC among the 0.1%SDS, washes 30 minutes (2 times) for 55 ℃, and room temperature is dried.Low strength is washed film:

1) good sample film has been hybridized in taking-up.

2) 2 * SSC among the 0.1%SDS, washes 15 minutes (2 times) for 37 ℃.

3) 0.1 * SSC among the 0.1%SDS, washes 15 minutes (2 times) for 37 ℃.

4) 0.1 * SSC among the 0.1%SDS, washes 15 minutes (2 times) for 40 ℃, and room temperature is dried.

X-light autography:

-70 ℃, X-light autography (the compressing tablet time decides according to hybridization spot radioactivity is strong and weak).

Experimental result:

Adopt low strength to wash the hybrid experiment that the film condition is carried out, more than two strong and weak not obviously differences of probe hybridization spot radioactivity; And adopting high strength to wash the hybrid experiment that the film condition is carried out, the hybridization spot radioactive intensity of probe 1 obviously is better than the radioactive intensity of another probe hybridization spot.Thereby available probe 1 is qualitative and analyze existence and the differential expression of polynucleotide of the present invention in different tissues quantitatively.

Sequence table＜110〉Fudan University

Bode Gene Development Co., Ltd., Shanghai＜120〉peptide species---repair relevant adenosine triphosphatase-36.41＜130 with DNA〉3505e09＜160〉9＜170〉PatentIn version 3.1＜210〉1＜211〉2165＜212〉DNA＜213〉human＜220＜221〉CDS＜222〉(152) .. (1147)＜223〉＜400〉1ggcctttgtc tctagctgca gccggcgttt caggtctcgt cttcactggt ctgtgtccta 60ttctcctgga ggcccagcct ctgtggccct gtgacctgca ggtattggga gatccacagc 120taaaacccca ggacaccctg gaagcataga a atg aat ccg gga ggt gga gct 172

Met?Asn?Pro?Gly?Gly?Gly?Ala

1 5tgc?att?gag?ccg?aga?ttg?cac?cac?cac?tcc?agc?ctg?ggc?gac?aga?ggg 220Cys?Ile?Glu?Pro?Arg?Leu?His?His?His?Ser?Ser?Leu?Gly?Asp?Arg?Gly

10 15 20aga?ctc?cgt?ctc?aaa?gaa?aaa?aaa?aaa?gta?tgg?tgc?cag?ttc?ttc?aga 268Arg?Leu?Arg?Leu?Lys?Glu?Lys?Lys?Lys?Val?Trp?Cys?Gln?Phe?Phe?Arg

25 30 35caa?tca?gta?aaa?aca?aac?ttc?tcc?aag?cta?aag?gag?gat?gtt?cga?atc 316Gln?Ser?Val?Lys?Thr?Asn?Phe?Ser?Lys?Leu?Lys?Glu?Asp?Val?Arg?Ile40 45 50 55cat?cat?aaa?gaa?gct?gga?aac?ctt?gaa?aaa?aga?tta?gat?gaa?tgg?cta 364His?His?Lys?Glu?Ala?Gly?Asn?Leu?Glu?Lys?Arg?Leu?Asp?Glu?Trp?Leu

60 65 70act?ata?ata?gac?agt?gta?gag?aag?acc?tta?aat?gac?ctg?ata?gag?ctg 412Thr?Ile?Ile?Asp?Ser?Val?Glu?Lys?Thr?Leu?Asn?Asp?Leu?Ile?Glu?Leu

75 80 85aaa?acc?atg?gcc?caa?aaa?cta?cgt?gat?gaa?tgc?aga?agc?ttg?agt?atc 460Lys?Thr?Met?Ala?Gln?Lys?Leu?Arg?Asp?Glu?Cys?Arg?Ser?Leu?Ser?Ile

90 95 100caa?tgt?gat?caa?cag?gaa?gaa?aaa?gta?tca?gtg?att?gtt?aaa?atg?aat 508Gln?Cys?Asp?Gln?Gln?Glu?Glu?Lys?Val?Ser?Val?Ile?Val?Lys?Met?Asn

105 110 115gaa?atg?aag?caa?gaa?gag?aag?ttt?aga?gat?aaa?ata?ata?aaa?aga?aat 556Glu?Met?Lys?Gln?Glu?Glu?Lys?Phe?Arg?Asp?Lys?Ile?Ile?Lys?Arg?Asn120 125 130 135gaa?caa?agc?ctc?caa?gaa?ata?tgg?gac?tat?gtg?aaa?aga?cca?aat?cta 604Glu?Gln?Ser?Leu?Gln?Glu?Ile?Trp?Asp?Tyr?Val?Lys?Arg?Pro?Asn?Leu

140 145 150cgt?ctg?att?ggt?gta?cct?gaa?agt?gat?ggg?gag?aat?aga?acc?aag?ttg 652Arg?Leu?Ile?Gly?Val?Pro?Glu?Ser?Asp?Gly?Glu?Asn?Arg?Thr?Lys?Leu

155 160 165gaa?aac?act?ctg?cag?gat?att?atc?cag?gag?aac?ttc?ccc?aac?cta?gca 700Glu?Asn?Thr?Leu?Gln?Asp?Ile?Ile?Gln?Glu?Asn?Phe?Pro?Asn?Leu?Ala

170 175 180agg?cag?gcc?gac?att?caa?att?cag?gaa?ata?cag?aga?acg?cca?caa?aga 748Arg?Gln?Ala?Asp?Ile?Gln?Ile?Gln?Glu?Ile?Gln?Arg?Thr?Pro?Gln?Arg

185 190 195tac?tct?tcg?aga?aga?gca?act?cca?aga?cac?ata?att?gtc?aga?ttc?acc 796Tyr?Ser?Ser?Arg?Arg?Ala?Thr?Pro?Arg?His?Ile?Ile?Val?Arg?Phe?Thr200 205 210 215aaa?gtt?gaa?atg?aag?gaa?aaa?atg?tta?agg?gca?gcc?aga?gag?aaa?ggt 844Lys?Val?Glu?Met?Lys?Glu?Lys?Met?Leu?Arg?Ala?Ala?Arg?Glu?Lys?Gly

220 225 230cgg?gtt?acc?cac?aaa?ggg?aag?ccc?atc?aga?cta?aca?gtg?gat?ctc?tcg 892Arg?Val?Thr?His?Lys?Gly?Lys?Pro?Ile?Arg?Leu?Thr?Val?Asp?Leu?Ser

235 240 245gca?gaa?act?cta?caa?gct?aga?aga?gag?tgg?ggg?cca?ata?ttc?aac?att 940Ala?Glu?Thr?Leu?Gln?Ala?Arg?Arg?Glu?Trp?Gly?Pro?Ile?Phe?Asn?Ile

250 255 260ctt?aaa?gaa?aag?aat?ttt?caa?ccc?aga?att?tca?tat?cca?gcc?aac?cta 988Leu?Lys?Glu?Lys?Asn?Phe?Gln?Pro?Arg?Ile?Ser?Tyr?Pro?Ala?Asn?Leu

265 270 275agc?ttc?atc?agt?gaa?gga?gaa?ata?aaa?tcc?ttt?acg?gac?aaa?caa?atc 1036Ser?Phe?Ile?Ser?Glu?Gly?Glu?Ile?Lys?Ser?Phe?Thr?Asp?Lys?Gln?Ile280 285 290 295ctg?aga?gat?ttt?gtc?acc?acc?agg?cct?gcc?tta?caa?gag?ctc?ctg?aag 1084Leu?Arg?Asp?Phe?Val?Thr?Thr?Arg?Pro?Ala?Leu?Gln?Glu?Leu?Leu?Lys

300 305 310gaa?gca?cta?aac?atg?gag?agg?aac?aac?tgg?tac?cag?tca?ctg?caa?aaa 1132Glu?Ala?Leu?Asn?Met?Glu?Arg?Asn?Asn?Trp?Tyr?Gln?Ser?Leu?Gln?Lys

315 320 325cat?gcc?aaa?tcg?taa?acaccatcaa?tgttaggaag?aaactgcatc?aactaacaag 1187His?Ala?Lys?Ser

330taaaataact?agctaacata?atgacaggac?caaattcaca?cataacaata?ttaaccttaa 1247atgtaaatgg?gctaaatgct?ccaattaaaa?gacacagact?ggcaaattgg?ataaagggcc 1307cagaccctgg?caggtgcagt?ggctcacacc?tgtaatccca?ccactttgtg?aggctgaagt 1367gggcagatca?cgaggtcagg?agatcgagac?tatcctggct?aacacagtga?aaccccatct 1427ctagtaaaaa?tacaaaaaca?tgccaggcta?atttttgttt?ttttattaga?gacaaggttt 1487caccatattg?gacaggctgg?tcttgaactc?ctcaccttgt?gatctgcctg?cttaagcctc 1547ccaatgtgct?gggattacag?gtgtgagaca?ccgtgcctgg?cttcttttta?atttctttaa 1607tgattaccat?tgagctttgt?ttttcatatg?cttgttagcc?acatgtatgt?cttcctttga 1667aaagcatctg?ttcatgtttt?ttgcccactt?tttaatgagg?tttggttttt?tcttgtaaac 1727ttgtttaagt?tctcattaat?tctggatatt?agacctttgt?cagaggcaaa?gtttgcaaat 1787attttctttt?attctgtagg?ttgtctgctt?actctgttga?tagtttcctt?tgctgtgaag 1847aatctcttta?gtttaaatag?gtcccatttg?tcagcttttg?cttttgttgc?aattgctttt 1907ggtagcttca?tcatgaagtg?tttgcaggtt?tctatgtcta?gaatggtagc?ttttatgtta 1967tcttgcaggg?tttcttataa?ttttatgttt?tacatttaag?tctttaattt?ttcttgagtt 2027gatttttgta?tgtggtgtaa?ttaaggggtt?cagtttaagt?gttctacata?ttactagtta 2087gttattccgg?caccatttat?taaatagaga?attttcccca?caaaaaaaaa?aaaaacatgt 2147cggccgcctc?ggcctatg 2165<210>2<211>331<212>PRT<213>human<400>2Met?Asn?Pro?Gly?Gly?Gly?Ala?Cys?Ile?Glu?Pro?Arg?Leu?His?His?His1 5 10 15Ser?Ser?Leu?Gly?Asp?Arg?Gly?Arg?Leu?Arg?Leu?Lys?Glu?Lys?Lys?Lys

20 25 30Val?Trp?Cys?Gln?Phe?Phe?Arg?Gln?Ser?Val?Lys?Thr?Asn?Phe?Ser?Lys

35 40 45Leu?Lys?Glu?Asp?Val?Arg?Ile?His?His?Lys?Glu?Ala?Gly?Asn?Leu?Glu

50 55 60Lys?Arg?Leu?Asp?Glu?Trp?Leu?Thr?Ile?Ile?Asp?Ser?Val?Glu?Lys?Thr65 70 75 80Leu?Ash?Asp?Leu?Ile?Glu?Leu?Lys?Thr?Met?Ala?Gln?Lys?Leu?Arg?Asp

85 90 95Glu?Cys?Arg?Ser?Leu?Ser?Ile?Gln?Cys?Asp?Gln?Gln?Glu?Glu?Lys?Val

100 105 110Ser?Val?Ile?Val?Lys?Met?Asn?Glu?Met?Lys?Gln?Glu?Glu?Lys?Phe?Arg

115 120 125Asp?Lys?Ile?Ile?Lys?Arg?Asn?Glu?Gln?Ser?Leu?Gln?Glu?Ile?Trp?Asp

130 135 140Tyr?Val?Lys?Arg?Pro?Asn?Leu?Arg?Leu?Ile?Gly?Val?Pro?Glu?Ser?Asp145 150 155 160Gly?Glu?Asn?Arg?Thr?Lys?Leu?Glu?Asn?Thr?Leu?Gln?Asp?Ile?Ile?Gln

165 170 175Glu?Asn?Phe?Pro?Asn?Leu?Ala?Arg?Gln?Ala?Asp?Ile?Gln?Ile?Gln?Glu

180 185 190Ile?Gln?Arg?Thr?Pro?Gln?Arg?Tyr?Ser?Ser?Arg?Arg?Ala?Thr?Pro?Arg

195 200 205His?Ile?Ile?Val?Arg?Phe?Thr?Lys?Val?Glu?Met?Lys?Glu?Lys?Met?Leu

210 215 220Arg?Ala?Ala?Arg?Glu?Lys?Gly?Arg?Val?Thr?His?Lys?Gly?Lys?Pro?Ile225 230 235 240Arg?Leu?Thr?Val?Asp?Leu?Ser?Ala?Glu?Thr?Leu?Gln?Ala?Arg?Arg?Glu

245 250 255Trp?Gly?Pro?Ile?Phe?Asn?Ile?Leu?Lys?Glu?Lys?Asn?Phe?Gln?Pro?Arg

260 265 270Ile?Ser?Tyr?Pro?Ala?Asn?Leu?Ser?Phe?Ile?Ser?Glu?Gly?Glu?Ile?Lys

275 280 285Ser?Phe?Thr?Asp?Lys?Gln?Ile?Leu?Arg?Asp?Phe?Val?Thr?Thr?Arg?Pro

290 295 300Ala?Leu?Gln?Glu?Leu?Leu?Lys?Glu?Ala?Leu?Asn?Met?Glu?Arg?Asn?Asn305 310 315 320Trp?Tyr?Gln?Ser?Leu?Gln?Lys?His?Ala?Lys?Ser

325 330<210>3<211>24<212>DNA<213>human<400>3ggcctttgtc?tctagctgca?gccg 24<210>4<211>24<212>DNA<213>human<400>4cataggccga?ggcggccgac?atgt 24<210>5<211>33<212>DNA<213>human<400>5catgctagca?tgaatccggg?aggtggagct?tgc 33<210>6<211>33<212>DNA<213>human<400>6catggatcct?tacgatttgg?catgtttttg?cag 33<210>7<211>15<212>PRT<213>human<400>7Met?Asn?Pro?Gly?Gly?Gly?Ala?Cys?Ile?Glu?Pro?Arg?Leu?His?His1 5 10 15

Claims (18)

1, a kind of isolated polypeptide-repair relevant adenosine triphosphatase-36.41 with DNA is characterized in that it includes: the polypeptide of the aminoacid sequence shown in＜210〉2 or the active fragments of its polypeptide, analogue or derivative.

2, polypeptide as claimed in claim 1, the aminoacid sequence that it is characterized in that described polypeptide, analogue or derivative has the homogeny with the aminoacid sequence at least 95% shown in＜210〉2.

3, polypeptide as claimed in claim 2, it is characterized in that it comprise have＜2l0 the polypeptide of the aminoacid sequence shown in 2.

4, a kind of isolating polynucleotide, it is characterized in that described polynucleotide comprise be selected from down the group in a kind of:

(a) coding have＜210〉2 shown in the polynucleotide of the polypeptide of aminoacid sequence or its fragment, analogue, derivative;

(b) with polynucleotide (a) complementary polynucleotide; Or

(c) with (a) or the polynucleotide of at least 70% homogeny (b) are arranged.

5, polynucleotide as claimed in claim 4, it is characterized in that described polynucleotide comprise coding and have＜210〉2 shown in the polynucleotide of aminoacid sequence.

6, polynucleotide as claimed in claim 4 is characterized in that the sequence of described polynucleotide includes＜2l0〉in 1 the 152-1147 position sequence or＜210〉1 in the sequence of 1-2165 position.

7, a kind of recombinant vectors that contains exogenous polynucleotide is characterized in that it is the recombinant vectors that is formed by the described polynucleotide of arbitrary claim among the claim 4-6 and plasmid, virus or vehicle expression vector establishment.

8, a kind of genetically engineered host cell that contains exogenous polynucleotide is characterized in that it is to be selected from following a kind of host cell:

(a) host cell that transforms or transduce with the described recombinant vectors of claim 7; Or

(b) host cell that transforms or transduce with the described polynucleotide of the arbitrary claim among the claim 4-6.

9, a kind of preparation method with adenosine triphosphatase-36.41 active polypeptide relevant with the DNA reparation is characterized in that described method comprises:

(a) expressing under adenosine triphosphatase-36.41 condition relevant, cultivate the described through engineering approaches host cell of claim 8 with the DNA reparation;

(b) from culture, isolate and have and DNA repairs the relevant active polypeptide of adenosine triphosphatase-36.41.

10, a kind of can with polypeptide bonded antibody, it is characterized in that described antibody be can with repair relevant adenosine triphosphatase-36.41 specificity bonded antibody with DNA.

11, the compound of an analoglike or adjusting polypeptide active or expression is characterized in that they are active compounds that simulation, promotion, antagonism or inhibition and DNA repair relevant adenosine triphosphatase-36.41.

12, compound as claimed in claim 11 is characterized in that it is＜polynucleotide sequence or its segmental antisense sequences shown in 210〉1.

13, the described application of compound of a kind of claim 11, it is characterized in that described compound be used to regulate with DNA repair relevant adenosine triphosphatase-36.41 in vivo, the method for external activity.

14, a kind of disease relevant or method of disease susceptibility of detecting with the described polypeptide of arbitrary claim among the claim 1-3, it is characterized in that it comprises the described polypeptide expression amount that detects, perhaps detect the activity of described polypeptide, perhaps detect and cause described expression of polypeptides amount or active unusual nucleotide diversity in the polynucleotide.

15,, it is characterized in that it is applied to screen stand-in, the agonist of repairing relevant adenosine triphosphatase-36.41 with DNA, antagonist or inhibitor as the application of polypeptide as described in the arbitrary claim among the claim 1-3; Perhaps be used for the peptide finger print identification.

16, as the application of the described nucleic acid molecule of arbitrary claim among the claim 4-6, it is characterized in that it is used for nucleic acid amplification reaction as primer, perhaps be used for hybridization, perhaps be used to make gene chip or microarray as probe.

17,, it is characterized in that forming pharmaceutical composition with safe and effective dosage and pharmaceutically acceptable carrier as diagnosis or the treatment disease relevant unusually with the adenosine triphosphatase-36.41 relevant with the DNA reparation with described polypeptide, polynucleotide or its stand-in, agonist, antagonist or inhibitor as the described polypeptide of arbitrary claim, polynucleotide or application of compound in claim 1-6 and 11.

18, the described polypeptide of arbitrary claim, polynucleotide or the application of compound among the claim 1-6 and 11, it is characterized in that being used for the treatment of as malignant tumour with described polypeptide, polynucleotide or compound, hemopathy, the medicine of HIV infection and immunological disease and all kinds of inflammation.

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