CN1285405A - Human RIP 110 protein and code sequence thereof - Google Patents

Human RIP 110 protein and code sequence thereof Download PDF

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CN1285405A
CN1285405A CN 99118059 CN99118059A CN1285405A CN 1285405 A CN1285405 A CN 1285405A CN 99118059 CN99118059 CN 99118059 CN 99118059 A CN99118059 A CN 99118059A CN 1285405 A CN1285405 A CN 1285405A
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sequence
polypeptide
rip110
hrip110
pep
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李能干
彭永德
徐淑华
贾佳
陈竺
傅刚
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NANFANG RESEARCH CENTRE STATE HUMAN GENE GROUP
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NANFANG RESEARCH CENTRE STATE HUMAN GENE GROUP
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Abstract

The present invention provides a new human RIP110 protein expressed in normal hypothalamic tissue of human body and its code sequence. Said invention also provides the preparation method of said protein and nucleic acid sequence and the method for detecting human RIP110 nucleic acid and polypeptide in sample.

Description

HRIP110.pep and encoding sequence thereof
The present invention relates to molecular endocrinology, genetic engineering, oncology, developmental biology field.Particularly, the present invention relates to a kind of RIP110 albumen and nucleotide sequence thereof of in human hypothalamus, expressing.The invention still further relates to the preparation method and the purposes of this albumen and nucleotide sequence.
A large amount of evidences show that the meta-bolites vitamin A acid (retinoids) of vitamin A all plays an important role in mammal embryo growth and adult physiological process.Vitamin A acid in fetal development as signaling molecule (Semin Cell Biol.1994Apr; 5 (2): 115-25.Review.), participated in the formation of multiple different embryonic structures, comprised face, the heart, eye, four limbs and neural system (J Nutr.1998 Feb; 128 (2 Suppl): 467S-470S.Review.).By the vitamin A acid defective embryonic is carried out vitamin A acid is handled and various retinoid receptor deletion mutants discover that vitamin A acid and acceptor thereof have participated in these processes.By observation, find to have in the fetal development ligand-receptor reaction of a large amount of vitamin A acids to the multiple abnormal conditions of the generation in the retinoid receptor deletion mutant.
Vitamin A acid can suppress lung cancer, and the propagation of breast cancer cell suppresses the growth of carcinogenic substance former squamous cell carcinoma of inductive segmental bronchus and breast tumor cell, thereby is used as the chemopreventive agent of these two kinds of cancers.And discover that further the retinoid receptor disappearance has caused the part cancer cells to vitamin A acid tolerance (Mutat Res.1996 Feb 19; 350 (1): 267-77.Review.).
The vitamin A acid function is by receptor-mediated (the Int J Biochem Cell Biol.1997Feb of the various members of nuclear hormone receptor family; 29 (2): 275-8.Review; FASEB is Jul J.1996; 10 (9): 940-54.Review).Up to now, the certified member of this family mainly contain retinoic acid receptor (RAR) (Retinoic acid receptors, RARs) and retinoic acid receptor X (Retinoid X receptors, abbreviate " RXRs " as) two big classes, each class all has α, three members of beta, gamma; This family has also comprised each autoreceptor of steroid, thyroxine, Vitamin D3 500,000 I.U/GM and other part etc. in addition.Each family member has six functional domains (A to F).In addition member (the Leukemia.1994 that is referred to as orphan receptor of some unknown its part also of this family; 8 Suppl 3:S1-10.Review.).After the activation of their ligands specifics of these receptor proteins response, be attached on the specific site of target gene and directly regulate transcription, and this site includes Hexanucleotide concensus sequence " AGGTCA ".Most acceptor members and RXR be combined into can greatly strengthen behind the heterodimer and its ligands specific between avidity.
Nineteen ninety-five, Wongi Seol etc. has separated cDNA (the MolEndocrinol.1995 Jan of several coding retinoic acid receptor X action proteins in the house mouse (Mus musculus) (RXR-interacting protein abbreviates " RIP " as) with yeast two-hybrid system; 9 (1): 72-85.).In four kinds of RIP that they studied, RIP14 and RIP15 obviously are the not certified as yet orphan members of nuclear receptor family.RIP110 only in the presence of RXR ligands specific 9-cis-retinoic acid (9-cis-RA) growth yeast cell in work, its ligand-dependent sexual cue it may transcribe with the ligand-dependent type or other activation process directly related.The influence whether reaction between RIP13 and the four kinds of members is not then existed by 9-cis-RA.RIP110 and RIP13 also act on other several receptor family members.
Before the present invention comes forth, any human RIP110 albumen that discloses or reported is not arranged as yet.
First purpose of the present invention just provides a kind of new people's gene RIP110 (Genbank AccessionNo.AF113538), and this gene is the gene of a kind of people's of coding retinoic acid receptor X action protein RIP110.
Second purpose of the present invention provides a kind of new people albumen-hRIP110.pep.
The 3rd purpose of the present invention provides a kind of recombinant technology that utilizes and produces the above-mentioned new hRIP110.pep and the method for nucleotide sequence.
The present invention also provides the application of this hRIP110.pep's polypeptide and encoding sequence.
In one aspect of the invention, a kind of isolated dna molecular is provided, this molecule comprises: coding has the nucleotide sequence of the active polypeptide of hRIP110.pep's matter, shows at least 70% homology from the nucleotides sequence of Nucleotide 22-1069 position dna molecular among described nucleotide sequence and the SEQ ID NO.6; Perhaps described nucleotide sequence can be under the moderate stringent condition with SEQID NO.6 in from the nucleotide sequence hybridization of Nucleotide 22-1069 position.Preferably, described sequence encoding has the polypeptide of the aminoacid sequence shown in the SEQ ID NO.7.More preferably, described sequence has among the SEQ ID NO.6 nucleotide sequence from Nucleotide 22-1069 position.
In another aspect of this invention, provide a kind of isolated hRIP110.pep's matter polypeptide, it comprises: have polypeptide or its conservative property variation polypeptide or its active fragments of SEQ ID NO.7 aminoacid sequence, or its reactive derivative.Preferably, this polypeptide is to have SEQ ID NO.7 polypeptide of sequence.
In another aspect of this invention, also provide a kind of carrier, it comprises above-mentioned dna molecular.
In another aspect of this invention, also provide a kind of usefulness above-mentioned carrier transformed host cells.This host cell is intestinal bacteria in an example; In another example, this host cell is an eukaryotic cell.
In another aspect of this invention, the method that also provides a kind of generation to have the active polypeptide of hRIP110.pep's matter, this method comprises:
(1) nucleotide sequence that coding is had an active polypeptide of hRIP110.pep operationally is connected in expression regulation sequence, form hRIP110.pep's expression vector, show at least 70% homology from the nucleotides sequence of Nucleotide 22-1069 position among described nucleotide sequence and the SEQ ID NO.6;
(2) change the expression vector in the step (1) over to host cell, form hRIP110.pep's reconstitution cell;
(3) under the condition that is fit to expressing human RIP110 protein polypeptide, the reconstitution cell in the culturing step (2);
(4) isolate and have the active polypeptide of hRIP110.pep.
Preferably, the nucleotide sequence that uses in the method has the sequence of 22-1069 position among the SEQ ID NO.6.
The present invention also provides and hRIP110.pep's polypeptid specificity bonded antibody.
In the present invention, " isolating ", " purifying " or " pure substantially " DNA are meant, this DNA or fragment have been arranged in the sequence of its both sides and have separated under native state, refer to that also this DNA or fragment with under the native state follow the component of nucleic acid to separate, and separate with the protein of in cell, following it.
In the present invention, refer to encode has the nucleotide sequence of the active polypeptide of hRIP110.pep to term " hRIP110.pep's (or polypeptide) encoding sequence ", as 22-1069 position nucleotide sequence and degenerate sequence thereof among the SEQ ID NO.6.This degenerate sequence is meant, is arranged in the encoder block 22-1069 position Nucleotide of SEQ ID NO.6 sequence, and having one or more codons to be encoded, the degenerate codon of same amino acid replaces the back and the sequence that produces.Because the degeneracy of codon, thus with SEQ ID NO.6 in 22-1069 position nucleotide sequence homology be low to moderate about 70% the degenerate sequence described sequence of SEQ ID NO.7 of also encoding out.This term also comprises can be under the moderate stringent condition, better under the height stringent condition with SEQ ID NO.6 in from the nucleotide sequence of the nucleotide sequence hybridization of Nucleotide 22-1069 position.This term also comprise with SEQ ID NO.6 in from the homology of nucleotide sequence at least 70% of Nucleotide 22-1069 position, preferably at least 80%, more preferably at least 90%, at least 95% nucleotide sequence best.
This term also comprises encoding to have the variant form of open reading frame sequence among proteic, the SEQ IDNO.6 with natural people RIP110 identical function.These variant forms comprise (but being not limited to): several (are generally 1-90, preferably 1-60, more preferably 1-20,1-10 best) disappearance, insertion and/or the replacement of Nucleotide, and several (are generally in 60 to hold interpolation 5 ' and/or 3 ', preferably being in 30, more preferably is in 10, is in 5 best) Nucleotide.
In the present invention, " pure substantially " protein or polypeptide are meant that it accounts at least 20% of the total material of sample at least, preferably at least 50%, more preferably at least 80%, and at least 90% (by dry weight or weight in wet base) best.Purity can be measured with any suitable method, as measure the purity of polypeptide with column chromatography, PAGE or HPLC method.Substantially pure polypeptide is substantially free of the component of following it under the native state.
In the present invention, term " hRIP110.pep or polypeptide " refers to have the active SEQ ID of hRIP110.pep NO.7 polypeptide of sequence.This term also comprises having and variant form natural human RIP110 identical function, SEQID NO.7 sequence.These variant forms comprise (but being not limited to): several (are generally 1-50, preferably 1-30, more preferably 1-20,1-10 best) amino acid whose disappearance, insertion and/or replacement, and add one or several at C-terminal and/or N-terminal and (be generally in 20, preferably being in 10, more preferably is in 5) amino acid.For example, in the art, when replacing, can not change proteinic function usually with the close or similar amino acid of performance.Again such as, add one or several amino acid at C-terminal and/or N-terminal and also can not change proteinic function usually.This term also comprises hRIP110.pep's active fragments and reactive derivative.
The variant form of people RIP110 polypeptide of the present invention comprises: homologous sequence, conservative property varient, allelic variant, natural mutation, induced mutation body, under high or low stringent condition can with the coded albumen of the DNA of people RIP110 DNA hybridization and the polypeptide or the albumen that utilize the antiserum(antisera) of anti-people RIP110 polypeptide to obtain.The present invention also provides other polypeptide, as comprises people RIP110 polypeptide or its segmental fusion rotein.Except the polypeptide of total length almost, the present invention also comprises the soluble fragments of people RIP110 polypeptide.Usually, this fragment have people RIP110 peptide sequence at least about 10 continuous amino acids, usually at least about 30 continuous amino acids, preferably at least about 50 continuous amino acids, more preferably at least about 80 continuous amino acids, best at least about 100 continuous amino acids.
In the present invention, " people RIP110 conservative property variation polypeptide " refers to compare with the aminoacid sequence of SEQ ID NO.7, has 10 at the most, and preferably at the most 8, more preferably 5 amino acid is replaced by similar performance or close amino acid and formed polypeptide at the most.These conservative property variation polypeptide are preferably replaced according to table 1 and are produced.
Table 1
Initial residue Representational replacement The preferred replacement
Ala(A) Val;Leu;Ile Val
Arg(R) Lys;Gln;Asn Lys
Asn(N) Gln;His;Lys;Arg Gln
Asp(D) Glu Glu
Cys(C) Ser Ser
Gln(Q) Asn Asn
Glu(E) Asp Asp
Gly(G) Pro;Ala Ala
His(H) Asn;Gln;Lys;Arg Arg
Ile(I) Leu;Val;Met;Ala;Phe Leu
Leu(L) Ile;Val;Met;Ala;Phe Ile
Lys(K) Arg;Gln;Asn Arg
Met(M) Leu;Phe;Ile Leu
Phe(F) Leu;Val;Ile;Ala;Tyr Leu
Pro(P) Ala Ala
Ser(S) Thr Thr
Thr(T) Ser Ser
Trp(W) Tyr;Phe Tyr
Tyr(Y) Trp;Phe;Thr;Ser Phe
Val(V) Ile;Leu;Met;Phe;Ala Leu
Invention also comprises the analogue of hRIP110.pep or polypeptide.The difference of these analogues and natural human RIP110 polypeptide can be the difference on the aminoacid sequence, also can be the difference that does not influence on the modified forms of sequence, perhaps haves both at the same time.These polypeptide comprise natural or the inductive genetic variant.The induce variation body can obtain by various technology, as by radiation or be exposed to mutagenic compound and produce random mutagenesis, also can pass through site-directed mutagenesis method or the biological technology of other known moleculars.Analogue also comprises having the analogue that is different from the amino acid whose residue of natural L-(as D-amino acid), and has non-natural analogue that exist or synthetic amino acid (as β, gamma-amino acid).Should be understood that polypeptide of the present invention is not limited to the above-mentioned representational polypeptide that exemplifies.
(the not changing primary structure usually) form of modification comprises: the chemically derived form such as the acetylize or carboxylated of the polypeptide that body is interior or external.Modification also comprises glycosylation, carries out glycosylation modified and polypeptide that produce in the procedure of processing as those in the synthetic and processing of polypeptide or further.This modification can be carried out glycosylated enzyme (as mammiferous glycosylase or deglycosylating enzyme) and finishes by polypeptide is exposed to.Modified forms also comprises have the phosphorylated amino acid residue sequence of (as Tyrosine O-phosphate, phosphoserine, phosphothreonine).Thereby also comprise the polypeptide that has been improved its anti-proteolysis performance or optimized solubility property by modifying.
In the present invention, can select various carrier known in the art for use, the carrier as commercially available comprises plasmid, clay etc.When producing people RIP110 polypeptide of the present invention, people RIP110 encoding sequence operationally can be connected in expression regulation sequence, thereby form hRIP110.pep's expression vector.
As used herein, " operationally being connected in " refers to a kind of like this situation, and promptly some part of linear DNA sequence can influence the activity of same other parts of linear DNA sequence.For example, if signal peptide DNA as precursor expression and participate in the secretion of polypeptide, signal peptide (secretion leader sequence) DNA operationally is connected in polypeptid DNA so; If transcribing of promotor control sequence, it is operationally to be connected in encoding sequence so; When if ribosome bind site is placed in the position that can make its translation, it is operationally to be connected in encoding sequence so.Generally, " operationally being connected in " means adjacent, then means in reading frame adjacent for the secretion leader sequence.
In the present invention, term " host cell " comprises prokaryotic cell prokaryocyte and eukaryotic cell.The example of prokaryotic host cell commonly used comprises intestinal bacteria, Bacillus subtilus etc.Eukaryotic host cell commonly used comprises yeast cell, insect cell and mammalian cell.Preferably, this host cell is an eukaryotic cell, as Chinese hamster ovary celI, COS cell etc.
The present invention also provides the antibody special to people RIP110, comprises polyclonal antibody and monoclonal antibody.
In the present invention, can use a series of methods known in the art to prepare special antibody at people RIP110.For example, the people RIP110 gene product or its antigen fragment of purifying are injected in people's animal body to produce polyclonal antibody.Equally, the cell of expressing human RIP110 or its antigen fragment also can be used for animal is caused immunity and produces antibody.Antibody prepared in accordance with the present invention also can be monoclonal antibody, and these monoclonal antibodies can prepare (for example, Kohler et al., Nature 256:495,1975 with hybridoma technology; Kohler etal., Eur.J.Immunol.6:511,1976; Kohler et al., Eur.J.Immunol.6:292,1976).Antibody of the present invention comprises the antibody that can prevent people RIP110 function, also can be the antibody that does not influence people RIP110 function.Each antibody-like can produce by the fragment of people RIP110 gene product or functional domain are caused immunity, and people RIP110 gene product and fragment thereof can produce or synthesize with Peptide synthesizer with recombination method.With the people RIP110 gene product bonded antibody of non-modified forms, can come immune animal to obtain by being used in the gene product that prokaryotic cell prokaryocyte for example produces among the E.coli.With posttranslational modification form such as glycosylation or phosphorylated protein or polypeptide bonded antibody, can obtain by the immune animal that comes that is used in the gene product that produces in eukaryotic cell such as yeast or the insect cell.
People RIP110 antibody of the present invention can be used for identifying the cell of expressing hRIP110.pep or polypeptide, as Jurkat T cell.For example, can with a kind of detectable molecule for example fluorescein isothiocyanic acid (FITC) come labelling human RIP110 specific antibody, allow people RIP110 specific antibody contact then, detect and people RIP110 specific antibody bonded cell with fluorescent microscope or flow cytometer again with cell sample.
Except cell surface detects people RIP110, can also analyze this protein with the Western engram technology.Cell pyrolysis liquid can from culturing cell or take from patient's tissue sample such as hypothalamus extract, and be dissolved in the lysis buffer that contains stain remover.Use sds polyacrylamide gel electrophoresis isolated cell extract (simultaneously with the people RIP110 polypeptide of purifying as positive control) then, then it is transferred on the nitrocellulose by electrophoresis hybridization.In order to survey people RIP110 polypeptide, can use typical antibodies detection method, for example radioautograph or alkaline phosphatase enzyme assay method with the immunity of Western trace.And can use the contrast of immunization serum or incoherent monoclonal antibody as non-specific responding.
Whether and quantity the expression of also available Nothern blotting technical Analysis people RIP110 gene product, the i.e. existence of rna transcription thing in cell of analyst RIP110.
The Western engram analysis of the Nothern engram analysis of people RIP110DNA and people RIP110 specific antibody can be united use, with the expression of confirmer RIP110 in biological specimen.People RIP110 DNA can also be used for Southern engram analysis or in situ hybridization analysis, with this assignment of genes gene mapping on karyomit(e), and can carry out genetic linkage analysis to find out other possible disease related gene.
In addition, the present invention also provides a kind of nucleic acid molecule that can be used as probe, and this molecule has 8-100 of people RIP0 nucleotide coding sequence, preferably 15-50 continuous nucleotide usually.This probe can be used for whether existing in the test sample nucleic acid molecule of coding people RIP110.
The present invention also provides the method that whether has people RIP110 nucleotide sequence in the test sample, and it comprises with above-mentioned probe and sample and hybridizing whether detection probes combination has taken place then.Preferably, this sample is the product behind the pcr amplification, and wherein the pcr amplification primer is corresponding to people RIP110 nucleotide coding sequence, and can be positioned at the both sides or the centre of this encoding sequence.Primer length is generally 15-50 Nucleotide.
In addition, according to people RIP110 nucleotide sequence of the present invention and aminoacid sequence, can be on the homology basis of nucleic acid homology or marking protein, screening people's RIP110 homologous gene or homologous protein.
In order to obtain and the people cDNAs of people RIP110 gene-correlation or the dot matrix of genomic dna s, can screen people cDNA or genome dna library with dna probe, these probes are under low stringent condition, with 32p people RIP110 all or part of cooked the radioactivity mark and.The cDNA library that most is suitable for screening is the library from people's inferior colliculus cerebral tissue.Also can be used for screening purpose from the cDNA library that participates in endocrine other tissue or specific human body cell strain.Structure is that biology field is well-known from the method in the cDNA library of interested cell or tissue.In addition, many such cDNA libraries also can buy, for example available from Clontech, and Palo Alto, Cal..This screening method can be discerned the nucleotide sequence of the gene family relevant with people RIP110.
Can finish as follows according to Nucleotide similarity screening people RIP110 homologue.Human hypothalamic cDNA library, for example (Clontech, Palo Alto Cal.) can use one section all or part of random primer dna probe screening that comprises people RIP110 gene order to Clontech Cat.#7429-1.Finish having clone's the evaluation of the DNA insertion sequence of 70% homology at least with people RIP110 sequence, can use hybridization temperature is 55 ℃ hybridization solution, uses 0.5 * SSC and 0.1%SDS to clean then.Shi Bie clone's DNA insertion sequence can be further estimated the similarity of it and people RIP110 gene with DNA restriction endonuclease analysis and dna sequencing in this way.The distribution of tissue expression can be with above-mentioned Northern blotting technical Analysis.
People RIP110 homologue also can be used at the antibody of hRIP110.pep or polypeptide and discern.For example, can be with the method for standard to commercial or make up with currently known methods, from cell or organize for example hypothalamic expression library to screen.Pour the library into plate, on colony lift to a nitrocellulose membrane, the recombinant protein of expression is attached on the film.Just can carry out typical antibodies and detection then with specific people RIP110 antibody.Identify the DNA insertion sequence among the clone in this way, can be further analyze to estimate the similarity of it and people RIP110 gene with DNA restriction endonuclease analysis and dna sequencing.The tissue expression of the gene of new identification distributes and can similarly analyze as stated above.
People RIP110 Nucleotide full length sequence of the present invention or its fragment can obtain with the method for pcr amplification method, recombination method or synthetic usually.For the pcr amplification method, can be disclosed according to the present invention about nucleotide sequence, especially open reading frame sequence designs primer, and with commercially available cDNA storehouse or by the prepared cDNA storehouse of ordinary method well known by persons skilled in the art as template, amplification and must relevant sequence.When sequence is longer, usually needs to carry out twice or pcr amplification repeatedly, and then the fragment that each time amplifies is stitched together by proper order.
In case obtained relevant sequence, just can obtain relevant sequence in large quantity with recombination method.This normally with its human cloning carrier, changes cell over to again, separates obtaining relevant sequence then from the host cell after the propagation by ordinary method.
In addition, also the method for available artificial chemosynthesis is synthesized relevant sequence.Before the application, prior art fully can be by first synthetic a plurality of polynucleotide small segments, and then connect and obtain the proteic nucleotide sequence of code book contriver RIP110.Then, can be with in various existing dna moleculars (as carrier) and the cell in this nucleotide sequence introducing this area.In addition, also can will suddenly change and introduce in the protein sequence of the present invention by chemosynthesis.
Except producing with recombination method, the also available solid phase technique of the proteic fragment of the present invention is produced (people such as Stewart, (1969) Solid-Phase Peptide Synthesis, WH FreemanCo., San Francisco by direct peptide synthesis; Merrifield J. (1963) J.Am Chem.Soc 85:2149-2154).Can carry out by hand or automatically at external synthetic protein.For example, can (Foster City CA) synthesizes peptide automatically with the 431A type peptide synthesizer of Applied Biosystems.Can distinguish proteic each fragment of chemosynthesis the present invention, be connected to produce the molecule of total length with chemical process then.
The proteic encoding sequence of the present invention can be used for the assignment of genes gene mapping.For example,, the cDNA clone is hybridized with the karyomit(e) of metaphase, can carry out chromosomal localization exactly by fluorescence in situ hybridization technique (FISH).This technology can be used the cDNA that is as short as about 500bp; Also can use and grow to about 2000bp or longer cDNA.For this technology, can be referring to people such as Verma, Human Chromosomes:A Manual ofBasic Techniques, Pergamon Press, New York (1988).
In case sequence is located in certain exact position on the karyomit(e), the physical location of sequence on karyomit(e) can be associated with the genetic map data.These genetic map data can obtain, for example by Mendelian (Mendelian) people genetic database (can obtain on the net by Johns Hopkins University Welch MedicalLibrary).Then, come identified gene by linkage analysis and be positioned dependency between the disease of same chromosomal region.
Then, be necessary to determine the cDNA between diseased individuals and the healthy individual or the difference of genome sequence aspect.Be not present in normal individual if a certain sudden change is present in part or all of diseased individuals, this sudden change may be exactly the paathogenic factor of this disease so.
Utilize hRIP110.pep of the present invention, by various conventional screening methods, can filter out with people RIP110 take place interactional material or, as acceptor, inhibitor or antagonist etc.
HRIP110.pep of the present invention and antibody thereof, inhibitor, antagonist or acceptor etc. when using (administration) in treatment, can provide different effects.Usually, can these materials are formulated in nontoxic, inert and the pharmaceutically acceptable aqueous carrier medium, wherein pH is generally about 5-8, and preferably pH is about 6-8, although the pH value can be with being changed to some extent by preparation Substance Properties and illness to be treated.The pharmaceutical composition for preparing can carry out administration by conventional route, comprising (but being not limited to): intramuscular, intraperitoneal, subcutaneous, intracutaneous or topical.
With hRIP110.pep of the present invention is example, can be with itself and suitable pharmaceutically acceptable carrier coupling.This class pharmaceutical composition contains protein and the pharmaceutically acceptable carrier or the vehicle for the treatment of significant quantity.This class carrier comprises (but being not limited to): salt solution, damping fluid, glucose, water, glycerine, ethanol and combination thereof.Pharmaceutical preparation should be complementary with administering mode.HRIP110.pep of the present invention can be made into the injection form, for example is prepared by ordinary method with the physiological saline or the aqueous solution that contains glucose and other assistant agents.Pharmaceutical composition such as tablet and capsule can be prepared by ordinary method.Pharmaceutical composition such as injection, solution, tablet and capsule should be made under aseptic condition.The dosage of activeconstituents is the treatment significant quantity, for example every day about 1 microgram/kg body weight-Yue 5 mg/kg body weight.In addition, polypeptide of the present invention also can use with the other treatment agent.
When hRIP110.pep's polypeptide of the present invention is used as medicine, this polypeptide of treatment effective dose can be applied to Mammals, wherein should treat effective dose usually at least about 10 micrograms/kg body weight, and in most of the cases be no more than about 8 mg/kg body weight, preferably this dosage is about 10 micrograms/kg body weight-Yue 1 mg/kg body weight.Certainly, concrete dosage also should be considered factors such as route of administration, patient health situation, and these all are within the skilled practitioners skill.
Find that by the homology retrieval new gene of the present invention has and delivers and be confirmed to be the proteic gene height of house mouse RIP110 homologous sequence, and new albumen of the present invention has the aminoacid sequence of house mouse RIP110 albumen high conservative.So people RIP110 of the present invention is a homologous gene of house mouse RIP110 protein gene and have similar function.
Fig. 1 is that the homology of people RIP110 of the present invention (hRIP110.seq) and house mouse RIP110 (mRIP110.seq) gene nucleic acid sequence (GenBank Accession No.U22015) compares (FASTA) figure.Wherein, identical Nucleotide marks with " | ".
Fig. 2 is that the homology of the aminoacid sequence (SwissProt Accession No.Q60811) of hRIP110.pep of the present invention (hRIP110.pep) and house mouse RIP110 albumen (mRIP110.pep) compares (FASTA) figure.Wherein, identical amino acid marks with the amino acid monocase between two sequences, and similar amino acid marks with "+".
Below in conjunction with specific embodiment, further set forth the present invention.Should be understood that these embodiment only to be used to the present invention is described and be not used in and limit the scope of the invention.The experimental technique of unreceipted actual conditions in the following example, usually according to normal condition, people such as Sambrook for example, molecular cloning: laboratory manual (New York:ColdSpring Harbor Laboratory Press, 1989) condition described in, or the condition of advising according to manufacturer.
Embodiment 1
The clone of people RIP110 gene
1. separate tissue (Tissue isolation)
Hypothalamus derives from 5 normal adult male sex donors, takes out inferior colliculus cerebral tissue in after death four hours, places the freezing preservation of liquid nitrogen immediately.
2.mRNA separation (mRNA isolation)
Take out tissue, grind, add the 50ml pipe that fills lysate, fully after the vibration, move in the glass homogenizer again with mortar.Move to 50ml after the homogenate and newly manage, and extracted total RNA (TRIzol Reagents, Gibco, NY, USA).Identify total RNA quality with the denaturing formaldehyde gel electrophoresis.Cellulose column with band Oligo d (T) separates mRNA among total RNA, quantitatively.
3.cDNA the structure in library (Construction of cDNA library)
With mRNA is template, and synthetic double chain cDNA, reverse transcription primer are seen SEQ ID NO.1.After mending flat end, add the joint that contains the EcoRI point of contact, joint sequence is seen SEQ ID NO.2 and 3 respectively.Behind the phosphorylation EcoRI end, use XhoI digestion with restriction enzyme 1.5 hours, carry out fragment again and separate.Cross the fragment of post screening length>500bp, use the phenol-chloroform extracting, ethanol sedimentation, the sterilized water dissolving, be connected to Uni-ZAP XR carrier (Stratagene, CA9203, USA), with Zap-cDNA Gigapack III Gold Cloning Kit (Stratagene, CA9203 USA) packs, and the host bacterium is used XL 1-Blue MRF ' (Stratagene, CA9203, USA) bacterium.Coated plate is also measured titre.
4. order-checking and database are set up (Seqencing and Database Constructing)
Select the clone who has the external source fragment to insert in the library, amplification back extracting plasmid (Qiagen, Germany), with T3 and T7 universal primer as 3 ' end and 5 ' hold, adopt thing fluorescent mark (Big-Dye, Perkin-Elmer, method USA) of stopping, (Perkin-Elmer carries out the EST large scale sequencing on USA) at ABI 377 sequenators.Sequencing result is removed the carrier sequence with FACTURA software, is transferred to the processing of carrying out next step on SUN Ultra 450 Server.All sequence informations are used the GCG software package again, and (Wisconsin group, USA) BLAST in and the existing database of FASTA software search (Genebank+EMBL) are lower than 95% sequence with no homology or homology and are considered as new gene and set up database.
5. the full-length clone of gene (Cloning of Full-length cDNA)
On the new gene fragment order information basis that obtains, carry out the cDNA full-length clone, carry out in two stages:
(1) " electronic cloning " (Electronic Cloning)
Search the dbEST database with new gene fragment order as probe, with overlap>50bp, homology is at (the Expressed Sequence Tag of the expressed sequence tag more than 98%, being called for short " EST ") sequence thinks same sequence (consensus sequence), take out and splice with AUTOASSEMBLER software, part EST can the extension probes sequence.Whether the sequence that is extended with the STRIDER software analysis has complete open reading frame (Open Reading Frame again, ORF), on Nucleotide and amino acid levels, whether homology is arranged with definite this sequence with BLAST search Genbank or SwissProt, to help how differentiate resulting full length gene integrity with other species.By the method for electronic cloning, can obtain the full length sequence of people RIP110 gene usually.
(2) the terminal rapid amplifying of cDNA (Rapid Amplification of cDNA Ends, RACE)
If do not obtain complete cDNA total length yet by " electronic cloning " method, then at 5 of existing sequence ' or 3 ' end design primer, (Clontech Lab, Inc carry out the long range PCR reaction in USA) in human hypothalamus Marathon-Ready cDNA library.Then to PCR product cloning, order-checking.The sequence that is extended with AUTOASSEMBLER and STRIDER software analysis has or not complete ORF, as not having, repeats said process until obtaining total length.
(3)RT-PCR
For 5 ' and 3 ' end known sequences, if the centre still has an intersegmental crack (gap) to obtain from existing public database or its data storehouse, can consider to adopt the method for RT-PCR.At sequence 5 ' end design primer, 3 ' end primer adopts Oligo-dT, increases in the total RNA of hypothalamus storehouse.Then product is cloned, checked order.Splice at last and obtain total length.
By being used in combination above-mentioned 3 kinds of methods, obtained candidate's hRIP110.pep's complete encoding sequence.Obtain on the total length basis of (comprising complete open reading frame at least) in splicing, further R1:5 '-CTGAATAGTTGCCGGCCTT-3 ' (SEQ ID NO.4) is a forward primer to the design primer, oligonucleotide R2:5 '-CCACCCCTCCTACTAATGGTTT-3 ' (SEQ ID NO.5) is a reverse primer, total RNA with inferior colliculus cerebral tissue is a template, carry out the RT-PCR amplification, the PCR condition of R1/R2 be 94 ℃ 5 minutes, carried out 35 circulations in 1 minute with 94 ℃ 30 seconds, 57 ℃ 30 seconds and 72 ℃ thereupon, extended 5 minutes with 72 ℃ at last.The electrophoresis detection pcr amplification product, the acquisition expanding fragment length is 1118bp.Clone, check order with pcr amplification product according to a conventional method then, obtain the sequence shown in the SEQ ID NO.6.
Embodiment 2
The sequence information and the homology analysis of people RIP110 gene
People RIP110 full-length cDNA (the GenBank Accession No.AF113538 that the present invention is new.Because of applying for maintaining secrecy, so open before the application to the public) length be 1118bp, detailed sequence is seen SEQ ID NO.6, wherein open reading frame is positioned at 68-1114 position Nucleotide.Derive the aminoacid sequence of people RIP110 according to full-length cDNA, totally 349 amino-acid residues, molecular weight 38477.21, pI are 5.67.Detailed sequence is seen SEQIDNO.7.
The full length cDNA sequence of people RIP110 and coded protein thereof are carried out Nucleotide and protein homology retrieval with blast program in Non-redundant GenBank+EMBL+DDBJ+PDB and Non-redundant GenBank CDStranslations+PDB+SwissProt+Superdate+PIR database, found that there is certain homology in the gene of it and house mouse.On nucleotide level, 803-1 789 bit bases of the mRNA whole coding sequence (GenBank Accession No.U22015) of it and house mouse RIP110 gene have 70.6% homogeny (Fig. 1), on amino acid levels, the 228-579 amino acids residue of it and house mouse RIP110 albumen (SwissProt Accession No.Q60811) has 62.4% homogeny and 80.3% similarity (Fig. 2).Therefore all there are higher homology in people RIP110 gene and house mouse RIP110 gene on nucleic acid still is protein level, belong to same family and both also have very high similarity on function.
People RIP110 of the present invention is used for further functional study except can be used as this family's a member, also can be used for producing fusion rotein with other albumen, such as producing fusion rotein with immunoglobulin (Ig).In addition, people RIP110 of the present invention can also merge with other members of this family or exchange fragment, to produce new albumen.For example the N end with hRIP110.pep of the present invention exchanges with the proteic N end of house mouse RIP110, to produce the albumen that new activity is higher or have new features.
At the antibody of inventor RIP110, be used to screen other members of this family, perhaps be used for affinity purification associated protein (as other members of this family).
In addition, inventor RIP110 nucleic acid (encoding sequence or antisense sequences) can be introduced into cell, with expression level that improves people RIP110 or the overexpression that suppresses people RIP110.HRIP110.pep of the present invention or its active polypeptide fragment can be applied to patient, with treatment or alleviate because of people RIP110 disappearance, no function or unusual cause related disorders arranged.In addition, can also be with carrying out relevant diagnosis or prognosis judgement based on nucleotide sequence of the present invention or antibody.
Because hRIP110.pep of the present invention has the natural acid sequence that is derived from the people, therefore, compare with the albumen of the same clan that derives from other species (as house mouse), estimate to have higher active and/or lower side effect (for example in the intravital immunogenicity of people lower or do not have) being applied to man-hour.
Embodiment 3
HRIP110.pep's 26S Proteasome Structure and Function research:
1. (network address is: retrieval motif (motif) http://expasy.hcuge.ch/sprot/scnpsitl.html) obtains following result: 1 MLPLPDLDLW PLDRLPSPIK RKPQTLGSLK SSQGIVEETS EEGNSVPASQ, 51 SVAALTSKRS LVLMPESSAE EITVCPETQL SSSETFDLER EVSPGSRDIL101 DGVRIIMADK EVGNKEDAEK EVAISTFSSS NQVSCPLCDQ CFPPTKIERH151 AMYCNGLMEE DTVLTRRQKE AKTKSDSGTA AQTSLDIDKN EKCYLCKSLV201 PFREYQCHVD SCLQLAKADQ GDGPEGSGRA CSTVEGKWQQ RLKNPKEKGH251 SEGRLLSFLE QSEHKTSDAD IKSSETGAFR VPSPGMEEAG CSREMQSSFT301 RRDLNESPVK SFVSISEATD CLVDFKKQVT VQPGSRTRTK AGRGRRRKF at the PROSITE database with hRIP110.pep's amino acid sequence
(1) in aminoacid sequence, there is following function motif:
(ⅰ) two drawn area (343-346): amination site (Amidation site)
(ⅱ) the black matrix district (28-30,56-59,165-167,227-229,300-302): protein kinase C phosphorylation site (Protein kinase C phosphorylation site)
(ⅲ) italic district (39-42,67-70,68-71,81-84,145-148,173-176,183-186,232-235,257-260,267-270,300-303,314-317): casein kinase i I phosphorylation site (Casein kinase IIphosphorylation site)
(ⅳ) the underscore district (27-32,226-231,285-290): N-myristoylation site (N-myristoylation site)
(2) functional analysis:
Amination site, N-myristoylation site, protein kinase C phosphorylation site, casein kinase i I phosphorylation site are all relevant with posttranslational modification (post-translational modifications).
With hRIP110.pep's aminoacid sequence the blocks database (network address is: index structure territory http://www.blocks.fhcrc.org) obtains following result:
1?MLPLPDLDLW?PLDRLPSPIK?RKPQTLGSLK?SSQGIVEETS?EEGNSVPASQ
51?SVAALTSKRS?LVLMPESSAE?EITVCPETQL?SSSETFDLER?EVSPGSRDIL
101?DGVRIIMADK?EVGNKEDAEK?EVAISTFSSS?NQVSCPLCDQ?CFPPTKIERH
151?AMYCNGLMEE?DTVLTRRQKE?AKTKSDSGTA?AQTSLDIDKN?EKCYLCKSLV
201?PFREYQCHVD?SCLQLAKADQ?GDGPEGSGRA?CSTVEGKWQQ?RLKNPKEKGH
251?SEGRLLSFLE?QSEHKTSDAD?IKSSETGAFR?VPSPGMEEAG?CSREMQSSFT
301?RRDLNESPVK?SFVSISEATD?CLVDFKKQVT?VQPGSRTRTK?AGRGRRRKF
(1) in aminoacid sequence, there is following structural domain district:
(ⅰ) underscore district (340-349): high mobility albumen-I and high mobility albumen-Y DNA combined function module (HMG-I and HMG-Y DNA-binding domain proteins)
(ⅱ) black matrix district (91-107): tethelin, the protein function module of prolactin and associated hormone (Somatotropin, prolactin and related hormones proteins)
(2) functional analysis
In this aminopeptidase gene acid sequence, have DNA combined function module, thereby can predicting it, to be attached to function that DNA go up to exercise transcriptional control be in the cards.
In sum, structure and the physicochemical property from the hRIP110.pep further confirmed this gene and the proteic similarity of house mouse RIP110.Because protein structure has determined the specific biochemical theory of function, therefore people RIP110 of the present invention has the similar or identical functions of house mouse RIP110.This gene is being brought into play important effect in the exocytosis process.
Embodiment 4
The distribution expression pattern of people RIP110 gene
1. electronics Northern express spectra.Press people's such as Ton C. method (Ton C et al., Biochem BiophysRes Commun 1997 Dec 18; 241 (2): 589-594; Hwang DM, et al., Circulation 1997 Dec16; 96 (12): 4146-4203), the BLAST retrieval will be done in the dbEST database of people RIP110 cDNA sequence in the GCG software package, in the human EST that obtains, the EST of probable value<10e-10, homogeny>95% has 76, can be considered the transcriptional expression of this gene in tissue originally, draw the tissue spectrum of expressing this gene thus, find that it all has expression in brain, colon, B cell germinal center, heart, Jurkat-T cell, liver, spleen, testis, uterus, show that it is all bringing into play important effect in the many histoorgans of human body.
Embodiment 5
The preparation and the purification of people RIP110 polypeptide
In this embodiment, the people RIP110 encoding sequence of total length or fragment are built into commercial protein merge among the expression vector, to express and purification of recombinant proteins.
1. people RIP110 polypeptide is carried out prokaryotic expression with the form of gst fusion protein in intestinal bacteria.
Construction of prokaryotic expression vector, and transformed into escherichia coli
Complete encoding sequence (SEQ ID NO.6) according to people RIP110, design amplifies complete coding and reads the primer of frame (correspond respectively to encoding sequence 5 ' and about 20 above Nucleotide of 3 ' end), and on positive anti-primer, introduce restriction endonuclease sites (this decides according to the pGEX-2T carrier of selecting for use) respectively, so that construction of expression vector.With the amplified production that obtains among the embodiment 1 is template, behind pcr amplification, with people RIP110 gene guarantee to read be cloned under the correct prerequisite of frame the pGEX-2T carrier (Pharmacia, Piscataway, NJ).Identify that good expression vector utilizes CaCl 2Method changes bacillus coli DH 5 alpha over to, and Screening and Identification obtains containing the engineering bacteria DH5 α-pGEX-2T-hRIP110 of pGEX-2T-hRIP110 expression vector.
Express the isolation identification of the engineering bacteria of GST-RIP110 recombinant protein
DH5 α-pGEX-2T-hRIP110 the engineering bacteria of picking list bacterium colony contains jolting overnight incubation in the LB substratum of 100 μ g/ml penbritins in 3ml, drawing nutrient solution by 1: 100 concentration cultivated about 3 hours in new LB substratum (containing 100 μ g/ml penbritins), after reaching 0.5 to OD600, adding IPTG continues at 37 ℃ to final concentration 1mmol/L and cultivates 0 respectively, 1,2,3 hours.It is centrifugal to get the different 1ml bacterium liquid of incubation time, in the bacterial precipitation thing, add lysate (2 * SDS sample-loading buffer, 50 μ l, distilled water 45 μ l, 3-mercaptoethanol 5 μ l), the suspendible bacterial precipitation, boiled in the boiling water bath 5 minutes, centrifugal 1 minute of 10000rpm, supernatant adds electrophoresis in the 12%SDS-PAGE glue.The bacterial strain that the protein content of dyeing back observation expection molecular weight size increases with the IPTG induction time is the engineering bacteria of expressing the GST-hRIP110 fusion rotein.
The extraction purifying of GST-RIP110 fusion rotein
The proteic engineering bacteria DH5 of abduction delivering GST-RIP110 amalgamation and expression α-pGEX-2T-hRIP110 as stated above.Bacterium centrifugation after inducing adds the resuspended bacterium of 20mlPBS, ultrasonication bacterium by every 400ml bacterium.The ultrasonic completely liquid of broken bacterium adds 50% saturated Triptide Sepharose4B of PBS by every milliliter of amount that adds 20 microlitres, 37 ℃ of joltings were in conjunction with 30 minutes, 10000rpm precipitated the Triptide Sepharose 4B that combines GST-RIP110 in centrifugal 10 minutes, abandoned supernatant.Clean twice by the amount that every milliliter of ultrasonic liquid gained precipitation adds 100 μ lPBS, then add 10 μ l reduced glutathione elutriants by every milliliter of ultrasonic liquid gained precipitation, room temperature was put 10 minutes, centrifugal 10 minutes of 10000rpm, and supernatant is the fusion rotein of wash-out.Repeat twice of wash-out.The supernatant of wash-out is stored in-80 ℃, and carries out the SDS-PAGE electrophoresis, detects purification effect.Protein band at the 38-39kDa place is the hRIP110.pep.
Embodiment 6
HRIP110.pep or polypeptide carry out eukaryotic cell expression in insect cell
1. the structure of people RIP110 rhabdovirus expression vector and transfection Sf 9 insect cell strain
According to the complete encoding sequence (SEQ ID NO.6) of people RIP110, design amplifies the primer that complete coding is read frame, and introduces restriction endonuclease sites (this is decided by the carrier of selecting for use) respectively on positive anti-primer, so that construction of expression vector.With the amplified production that obtains among the embodiment 1 is template, behind pcr amplification, with people RIP110cDNA under the prerequisite that guarantees reading frame, be cloned into the pVL1392 carrier (Invitrogen, Carlsbad, CA).Identify good expression vector 3 μ g, wild-type linearized baculovirus dna (BaculoGoldTM ACMNPV DNA, Pharmingen, San Diego, CA) (Gibco-BRL, NY) 25 μ l add in the insect substratum of 1ml serum-free for 1 μ g and Lipofection, the 15 seconds mixings that vibrate, incubated at room 15 minutes is standby.Get 1ml (2 * 10 6) Sf9 insect cell suspension is in 60mm tissue culturing plate, change transfection media after adherent 1 hour, incubated at room was abandoned substratum after 15 minutes, add the dna vector transfection mixture for preparing previously, Parafilm seals culture plate, cultivated 4 hours in 27 ℃ of joltings of room temperature, then change perfect medium and cultivated 3 days, it is standby to collect supernatant.
2. change the Screening and Identification of the insect cell line of recombinant expression vector over to
The insect cell of transfection after 3 days made cell suspension (2 * 10 with fresh culture 6/ 1 ml), get the 1ml cell suspension and place 60mm tissue culture ware, add the 3ml substratum, the culture supernatant that 100 μ l collect, adherent 1 hour, abandon the 2ml substratum, continue incubated at room temperature 1 hour, and discarded all substratum, add the 3ml semisolid medium that contains 20 μ l 4%X-gal of preheating, cultivate after 5-7 days picking white cell clone and in 96 well culture plates, cultivated 3-5 days, then draw supernatant infection Sf9 insect cell.
Collect the cell that infects and carry out the Western evaluation.The SDS-PAGE electrophoresis will be carried out after the lysis, glue behind the electrophoresis prints to protein transduction on the nitrocellulose membrane in the half-dried electrotransfer instrument of the MultiphorII of Pharmacia, nitrocellulose membrane is placed confining liquid sealing 1 hour, then in the antibody-solutions of anti-people RIP110, sealed 1 hour, the jolting of TBS liquid is cleaned 5 minutes 2 times totally, then film is placed the anti-second antibody solution jolting of biotin labeled anti-people RIP110 one 1 hour, TBS cleans, adding avidin-alkaline phosphatase enzyme complex reacted 30 minutes, TBS cleans 2 times, adds freshly prepared colour developing liquid colour developing and observes protein band.
The Sf9 cell clone of picking high expression level people RIP110.
3. hRIP110.pep's extraction purifying
Supernatant with the Sf9 cell clone of high expression level people RIP110 infects the Sf9 cell in a large number, infects collecting cell after 48 hours, the PBS washing.Per 2 * 10 8Cell adds 20ml cell pyrolysis liquid (0.5%Triton X-100,20mM Na 3PO 4(sodium phosphate, pH7.8), 500mM NaCl, 1mM Na 3VO 4(vanadic acid sodium), 1mMPefabloc, 1 μ g/ml pepstatin, leupeptin and aprotinin) broken cell, the centrifugal 20min of 12000 * g removes cell debris, and supernatant is by per 2 * 10 8Cell add 2ml NTA-agarose (Qiagen, Germany), 4 ℃ of absorption 1 hour.Then with containing the His damping fluid washed twice of 100nM imidazoles, with containing 20mMN, N '-two piperazine, 500mMNaCl, the buffer solution elution of 300mM imidazoles is to obtain the albumen of purifying.Elutriant is stored in 4 ℃, and carries out the hRIP110.pep's of SDS-PAGE electrophoresis detection extraction purity.Protein band at the 38-39kDa place is the hRIP110.pep.
Embodiment 7
The preparation of anti-people RIP110 antibody
1. the preparation of immune mouse and splenocyte: it is standby that the hRIP110.pep that obtains among embodiment 5 and the embodiment 6 is separated the back with chromatography, also can separate with the SDS-PAGE gel electrophoresis, electrophoretic band is cut off from gel, and with isopyknic complete Freund ' s adjuvant emulsion.Get the female mouse of 6-8 week Balb/C in age, the albumen with 50-100 μ g/0.2ml emulsification carries out peritoneal injection to mouse.After 14 days, with the same antigen of non-complete Freund ' s adjuvant emulsion to mouse with the dosage of 50-100 μ g/0.2ml again booster immunization once be used for after 3-5 days merging.Wherein, E Zheng chief editor, " tissue culture and molecular cell learn a skill ", Beijing Publishing House, the 210th page are seen in the splenocyte preparation.
2. by " tissue culture and molecular cell learn a skill " (the same), the method in the 371st page, preparation feeder cell.
3. by " tissue culture and molecular cell learn a skill " (the same), the method in the 213rd page is carried out cytogamy.
4. detection of antibodies: after cytogamy 10-15 days, need to check by the hole, in case find vigorous hybrid cell colony growth, just use the preliminary screening that the hRIP110.pep does antibody activity, method commonly used has: immunofluorescent test, emission immunity test (RIA), enzyme linked immunosorbent assay (ELISA).After checking out the hole of antibody activity, clone cultivation at once, and isolate antibody.
Sequence table
(1) general information:
(ⅰ) applicant: Nanfang Research Centre, State Human Gene Group
(ⅱ) denomination of invention: hRIP110.pep and encoding sequence thereof
(ⅲ) sequence number: 7
(2) information of SEQ IDNO.1
(ⅰ) sequence signature:
(A) length: 50bp
(B) type: Nucleotide
(C) chain: strand
(D) topological framework: linearity
(ⅱ) molecule type: oligonucleotide
(ⅸ) sequence description: SEQ ID NO.1GAGAGAGAGAGAGAGAGAGAACTAGTCTCGAGTTTTTTTTTTTTTTTTTT 50
(2) information of SEQ ID NO.2
(ⅰ) sequence signature:
(A) length: 13bp
(B) type: Nucleotide
(C) chain: strand
(D) topological framework: linearity
(ⅱ) molecule type: oligonucleotide
(ⅸ) sequence description: SEQ ID NO.2
AATTCGGCACGAG??????????????????????????????????????13
(2) information of SEQ ID NO.3
(ⅰ) sequence signature:
(A) length: 9bp
(B) type: Nucleotide
(C) chain: strand
(D) topological framework: linearity
(ⅱ) molecule type: oligonucleotide
(ⅸ) sequence description: SEQ ID NO.3
GCCGTGCTC???????????????????????????????????????????????9
(2) information of SEQ ID NO.4
(ⅰ). sequence signature:
(A) length: 19bp
(B) type: Nucleotide
(C) chain: strand
(D) topological framework: linearity
(ⅱ). molecule type: oligonucleotide
(ⅸ). sequence description: SEQ ID NO.4
CTGAATAGTTGCCGGCCTT???????????????????????????????????19
(2) information of SEQ ID NO.5
(ⅰ). sequence signature:
(A) length: 22bp
(B) type: Nucleotide
(C) chain: strand
(D) topological framework: linearity
(ⅱ). molecule type: oligonucleotide
(ⅸ). sequence description: SEQ ID NO.5
CCACCCCTCCTACTAATGGTTT?????????????????????????????22
(2) information of SEQ ID NO.6
(ⅰ) sequence signature:
(A) length: 1118bp
(B) type: Nucleotide
(C) chain: strand
( D ) : ( ⅱ ) : ( ⅸ ) :SEQ ID NO.6 1 CTGAATAGTT GCCGGCCTTC TGATGCTTCC GCTACCAGAT CTCGACCTCT 51 GGCCACTGGA CCGTCTTCCC AGTCCCATCA AGAGAAAACC ACAGACTCTG 101 GGCTCACTGA AGTCTTCCCA AGGGATTGTT GAAGAAACTT CTGAAGAGGG 151 AAACTCTGTA CCTGCTTCAC AAAGTGTTGC TGCTTTGACC AGTAAGAGAA 201 GCTTAGTCCT TATGCCAGAG AGTTCTGCAG AAGAAATCAC TGTTTGTCCT 251 GAGACaCAGC TAAGTTCCTC TGAAACTTTT GACCTTGAAA GAGAAGTCTC 301 TCCAGGTAGC AGAGATATCT TGGATGGAGT CAGAATAATA ATGGCAGATA 351 AGGAGGTTGG TAACAAGGAA GATGCTGAGA AGGAAGTAGC TATTTCTACC 401 TTCTCATCCA GTAACCAGGT ATCCtGCCCG CTATGTGACC AATGCTTTCC 451 ACCCACAAAG aTTGAaCGaC ATGCCATGTA CTGCAATGGt CTGATGGAGG 501 AAGATACAGT ATTGACTCGG AGACAAAAAG AGGCCAAGAC CAAGAGTGAC 551 AGTGGGACAG CTGCCCAGAC TTCTCTAGAC ATTGACAAGA ATGAGAAGTG 601 TTACCTCTGT AAATCCCTGG TCCCATTTAG AGAgTATCAG TGTCATGTGG 651 ACTCCTGTCT CCAGCTTGCA AAGGCTGACC AAGGAGATGG ACCTGAAGGG 701 AGTGGAAGAG CATGTTCAAC TGTGGAGGGG AAGTGGCAGC AGAGGCTGAA 751 GAACCCAAAG GAAAAAGGCC ACAGTGAAGG CCGACTCCTT AGTTTCTTGG 801 AACAGTCTGA GCACAAGACT TCAGATGCAG ACATCAAGTC TTCAGAAACA 851 GGAGCCTTCA GGGTGCCTTC ACCAGGGATG GAAGAGGCAG GCTGCAGCAG 901 AGAGATGCAG AGTTCTTTCA CACGTCGTGA CTTAAATGAA TCTCCCGTCA 951 AGTCTTTTGT TTCCATTTCA GAAGCCACAG ATTGCTTAGT GGACTTTAAA1001 AAGCAAGTTA CTGTCCAGCC AGGTAGTCGG ACACGGACCA AAGCTGGCAG1051 AGGAAGAAGG AGAAAATTCT GAATTTCTAG GGTCCAAAAG TTGACAAAAC1101 CATTAGTAGG AGGGGTGG ( 2 ) SEQ ID NO.7 ( ⅰ ) :
(A) length: 349 amino acid
(B) type: amino acid
(C) chain: strand
( D ) : ( ⅱ ) : ( ⅸ ) :SEQ ID NO.7:Met Leu Pro Leu Pro Asp Leu Asp Leu Trp Pro Leu Asp Arg Leu 15Pro Ser Pro Ile Lys Arg Lys Pro Gln Thr Leu Gly Ser Leu Lys 30Ser Ser Gln Gly Ile Val Glu Glu Thr Ser Glu Glu Gly Asn Ser 45Val Pro Ala Ser Gln Ser Val Ala Ala Leu Thr Ser Lys Arg Ser 60Leu Val Leu Met Pro Glu Ser Ser Ala Glu Glu Ile Thr Val Cys 75Pro Glu Thr Gln Leu Ser Ser Ser Glu Thr Phe Asp Leu Glu Arg 90Glu Val Ser Pro Gly Ser Arg Asp Ile Leu Asp Gly Val Arg Ile 105Ile Met Ala Asp Lys Glu Val Gly Asn Lys Glu Asp Ala Glu Lys 120Glu Val Ala Ile Ser Thr Phe Ser Ser Ser Asn Gln Val Ser Cys 135Pro Leu Cys Asp Gln Cys Phe Pro Pro Thr Lys Ile Glu Arg His 150Ala Met Tyr Cys Asn Gly Leu Met Glu Glu Asp Thr Val Leu Thr 165Arg Arg Gln Lys Glu Ala Lys Thr Lys Ser Asp Ser Gly Thr Ala 180Ala Gln Thr Ser Leu Asp Ile Asp Lys Asn Glu Lys Cys Tyr Leu 195Cys Lys Ser Leu Val Pro Phe Arg Glu Tyr Gln Cys His Val Asp 210Ser Cys Leu Gln Leu Ala Lys Ala Asp Gln Gly Asp Gly Pro Glu 225Gly Ser Gly Arg Ala Cys Ser Thr Val Glu Gly Lys Trp Gln Gln 240Arg Leu Lys Asn Pro Lys Glu Lys Gly His Ser Glu Gly Arg Leu 255Leu Ser Phe Leu Glu Gln Ser Glu His Lys Thr Ser Asp Ala Asp 270Ile Lys Ser Ser Glu Thr Gly Ala Phe Arg Val Pro Ser Pro Gly 285Met Glu Glu Ala Gly Cys Ser Arg Glu Met Gln Ser Ser Phe Thr 300Arg Arg Asp Leu Asn Glu Ser Pro Val Lys Ser Phe Val Ser Ile 315Ser Glu Ala Thr Asp Cys Leu Val Asp Phe Lys Lys Gln Val Thr 330Val Gln Pro Gly Ser Arg Thr Arg Thr Lys Ala Gly Arg Gly Arg 345Arg Arg Lys Phe 349

Claims (10)

1. isolated dna molecular is characterized in that it comprises: coding has the nucleotide sequence of the active polypeptide of hRIP110.pep's matter, and
Show at least 70% homology from the nucleotides sequence of Nucleotide 22-1069 position among described nucleotide sequence and the SEQ ID NO.6; Perhaps described nucleotide sequence can be under the moderate stringent condition with SEQ ID NO.6 in from the nucleotide sequence hybridization of Nucleotide 22-1069 position.
2. dna molecular as claimed in claim 1 is characterized in that described sequence encoding has the polypeptide of sequence shown in the SEQ IDNO.7.
3. dna molecular as claimed in claim 1 is characterized in that, this sequence has among the SEQ ID NO.6 nucleotide sequence from Nucleotide 22-1069 position.
4. isolated hRIP110.pep's polypeptide is characterized in that it comprises: have polypeptide or its conservative property variation polypeptide or its active fragments of SEQ ID NO.7 aminoacid sequence, or its reactive derivative.
5. polypeptide as claimed in claim 4 is characterized in that, this polypeptide is to have SEQ ID NO.7 polypeptide of sequence.
6. a carrier is characterized in that, it comprises the described DNA of claim 1.
7. one kind with the described carrier transformed host cells of claim 6.
8. a generation has the method for the active polypeptide of hRIP110.pep's matter, it is characterized in that this method comprises:
(1) nucleotide sequence that coding is had an active polypeptide of hRIP110.pep operationally is connected in expression regulation sequence, form hRIP110.pep's expression vector, show at least 70% homology from the nucleotides sequence of Nucleotide 22-1069 position among described nucleotide sequence and the SEQ ID NO.6;
(2) change the expression vector in the step (1) over to host cell, form hRIP110.pep's reconstitution cell;
(3) under the condition that is fit to expressing human RIP110 protein polypeptide, the reconstitution cell in the culturing step (2);
(4) isolate and have the active polypeptide of hRIP110.pep.
9. energy and the described hRIP110.pep's polypeptid specificity of claim 7 bonded antibody.
10. a nucleic acid molecule is characterized in that, it comprises 8-100 continuous nucleotide in the described dna molecular of claim 1.
CN 99118059 1999-08-18 1999-08-18 Human RIP 110 protein and code sequence thereof Pending CN1285405A (en)

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Cited By (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN114182010A (en) * 2022-01-11 2022-03-15 首都医科大学附属北京朝阳医院 Plasma exosome circRNA marker and application thereof

Cited By (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN114182010A (en) * 2022-01-11 2022-03-15 首都医科大学附属北京朝阳医院 Plasma exosome circRNA marker and application thereof
CN114182010B (en) * 2022-01-11 2022-06-07 首都医科大学附属北京朝阳医院 Plasma exosome circRNA marker and application thereof

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