CN1256436C - Nucleotide peculiar to 0-antigen of 0120 type bacillus coli - Google Patents

Abstract

The present invention provides a specific nucleotide for an O-antigen of Escherichia coli O120. The specific nucleotide is the nucleotide complete sequence of gene clusters in Escherichia coli O120 for controlling the synthesis of an O-antigen, such as a separated nucleotide with the total length of 12485 basic groups shown as SEQ ID NO: 1 or the nucleotide of SEQ ID NO: 1 which has one or a plurality of inserted, deleted or substituted basic groups and can simultaneously keep the functions of the separated nucleotide. The specific nucleotide also comprises the oligonucleotide from glycosyltransferase genes and oligosaccharide unit processing genes in the O-antigen gene clusters of Escherichia coli O120. The present invention verifies that the oligonucleotide has high specificity to all of the O-antigen genes of Escherichia coli O120 through PCR. The present invention also discloses a method for detecting and identifying Escherichia coli O120 in the human body and the environment by the oligonucleotide of the present invention.

Description

Nucleotide to the O-antigen-specific of intestinal bacteria O120 type

Technical field

The present invention relates to the complete nucleotide sequence of control O-antigen synthetic gene cluster in the intestinal bacteria O120 type (Escherichia coli O120), particularly relate in the intestinal bacteria O120 type oligonucleotide in the control O-antigen synthetic gene cluster, can utilize these the oligonucleotide of the O-antigen-specific intestinal bacteria O120 type in human body and the environment and identify O-antigen in these pathogenic bacterium quickly and accurately.

Background technology

O-antigen is the O specific polysaccharide composition in the gram negative bacterium lipopolysaccharides, and it is made up of many multiple oligosaccharide unit.The antigenic building-up process of O-is studied clearlyer: by glycosyltransferase nucleoside diphosphate monose is transferred on the fat molecule that is fixed on the cell inner membrance earlier, then in the inboard synthesis of oligose unit of inner membrance, the antigenic oligosaccharide unit of O-is transferred to the inner membrance outside by the transhipment enzyme again, then aggregate into polysaccharide by polysaccharase, be connected to again and form lipopolysaccharide molecule [Whitfield, C. (1995) " Biosynthesis of lipopolysaccharide O antigens " .Trends inMicrobiology.3:178-185 on the glycolipid molecule; Schnaitman, C.A.and J.D.Klena. (1993) " Genetics oflipopolysaccharide biosynthesis in entericbacteria " .MicrobiologicalReviews, 57 (3): 655-682].Coding is responsible for one adjacent arrangement on karyomit(e) of gene of all enzyme molecules of O-antigen synthetic, form a gene cluster [Reeves, P.R., et a1. (1996) " Bacterialpolysaccharide synthesis and gene nomenclature " Trends in Microbiology, 4:495-503].In Shigellae, intestinal bacteria and Salmonellas, O-antigen gene [Lei Wang.et al (2001) " Sequence analysis of four Shigella boydii O-antigenloci:implication for Escherichia coli and Shigella relationships " .Infection andImmunity, 11:6923-6930 bunch between galF and gnd gene; Lei Wang and Peter Reeves (2000) " The Escherichia coliO111 and Salmonella enterica O35 gene clusters:gene clusters encoding the samecolitose-containing O antigen are highly conserved " .Journal ofBacteriology.182:5256-5261].The O-antigen gene bunch contains three genoids: sugared synthesis path gene, glycosyltransferase gene, oligosaccharide unit treatment gene, the required nucleoside diphosphate monose of enzymic synthesis O-antigen of wherein sugared synthesis path genes encoding; Thereby the enzyme of glycosyltransferase gene coding forwards nucleoside diphosphate monose and other molecule to and makes monose aggregate into oligosaccharide unit on the monose; The oligosaccharide unit treatment gene comprises transhipment enzyme gene and pol gene, and they transfer to the bacterium inner membrance outside with oligosaccharide unit, and repolymerization becomes polysaccharide.Glycosyltransferase gene and oligosaccharide unit treatment gene only are present in the gene cluster of carrying these genes.The difference of monose in the O-antigen, between monose between the difference of link button and the oligosaccharide unit difference of link button constituted the antigenic diversity of O-, and the composition of monose, the link button between monose and the link button between the oligosaccharide unit are by the Gene Handling in the O-antigen gene bunch, so the O-antigen gene bunch has determined O-antigenic synthetic, has also determined the antigenic diversity of O-.

Because O-antigen is extremely strong antigen, be one of important paathogenic factor of intestinal bacteria, it has extremely strong diversity again simultaneously, and this enlightens us can study a kind of intestinal bacteria and good, highly sensitive method of the antigenic specificity of O-thereof of detecting quickly and accurately.With surperficial polysaccharide is that the serology immune response of target has been used to somatotype and the evaluation to bacterium always since the thirties in last century, is unique means of identifying pathogenic bacterium.This diagnostic method needs a large amount of antiserum(antisera)s, and the antiserum(antisera) general classes is incomplete, quantity not sufficient, and also there are some difficulties in a large amount of antiserum(antisera)s in preparation with in storing.On the other hand this method length consuming time, sensitivity is low, loss is high, poor accuracy, so, generally believe that now this traditional serology detection method will be that the modern molecular biology method replaces.1993, Luk, J.M.C et.al has identified the O-antigen [Luk of Salmonellas with the specific nucleotide sequence of Salmonellas (S.enterica) O-antigen gene bunch by PCR method, J.M.C.et.al. (1993) " Selective amplification of abequose andparatose synthase genes (rfb) by polymerase chain reaction for identification ofS.enterica major serogroups (A; B; C2; andD) ", J.Clin.Microbiol.31:2118-2123].Luk, the method for et.al is with corresponding to Salmonellas serotype E 1, D1 obtains the oligonucleotide special to the Salmonellas of different serotypes after the nucleotide sequence of the CDP-abequose in the A, the O-antigen of B and C2 and the synthetic gene of CDP-tyvelose is arranged.1996, Paton, the A.W et.al serotype [" Molecular microbiological investigation of an outbreak of Hemolytic-Uremic Syndrome caused by dry fermented sausage contaminated with Shiga-liketoxin producing Escherichia coli " .J.Clin.Microbio1.34:1622-1627] of the oligonucleotide that comes from the wbdI gene of the O-antigen-specific of E.coli O111 having been identified the toxogenic E.coli O111 of a strain, but afterwards studies show that Paton, the usefulness of A.W et.al comes from the oligonucleotide of wbdI gene and identifies that the method for the serotype of E.coli O111 has false positive results to occur.Bastin D.A.and Reeves, P.R. think, this is because the wbdI gene is sugared synthesis path gene [the Bastin D.A.andReeves of a supposition, P.R. (1995) Sequence and analysis of the O antigen gene (rfb) cluster ofEscherichia coli O111.Gene 164:17-23], and have this sugar in the antigenic structure of the O-of other bacterium, so sugared synthesis path gene is not a high special for O-antigen yet

Shigellae has 46 kinds of serotypes, but have only 33 kinds of different O-antigens, intestinal bacteria have 166 kinds of different O-antigen [Reeves, P.R (1992) " Variation in O antigens; niche specificselection and bacterial populations " .FEMS Microbiol.Lett, 100:509-516], the two sibship is very near, and there are 12 kinds to be intestinal bacteria and the total [Ewing of Shigellae, W.H. (1986) " Edwards and Ewing ' s identification of the Enterobacteriaceae " .Elsevier SciencePublishers, Amsterdam, The Netherlands; T.cheasty, et al. (1983) " Antigenicrelationships between the enteroinvasive Escherichia coli antigensO28ac; O112ac; O124; O136, O143, O144; O152and and Shigella O antigens " J.clinMicrobiol, 17 (4): 681-684]

Summary of the invention

The Nucleotide that the purpose of this invention is to provide a kind of O-antigen-specific to intestinal bacteria O120 type.It is the Nucleotide in the O-antigen gene bunch of intestinal bacteria O120 type, is the special Nucleotide that comes from glycosyltransferase gene and transhipment enzyme gene and pol gene.

A time purpose of the present invention has provided the full length nucleotide sequence of the O-antigen gene bunch of intestinal bacteria O120 type.

Another object of the present invention has provided the gene of the O-antigen gene bunch that constitutes intestinal bacteria O120 type: the gene of transhipment enzyme is the wzx gene or with wzx the gene of identity function is arranged; Pol gene is the wzy gene or with wzy the gene of identity function is arranged; Glycosyltransferase gene comprises orf6, orf9, orf10 gene.

Another purpose of the present invention has provided oligonucleotide, and the gene that they come from encoding glycosyl transferring enzyme in the O-antigen gene bunch of intestinal bacteria O120 type respectively comprises orf6, orf9, orf10 gene; The gene that coming from coding transhipment enzyme is the wzx gene or with wzx the gene of identity function is arranged; The gene that comes from the coding polysaccharase is the wzy gene or with wzy the gene of identity function is arranged; They are the oligonucleotide in the said gene, and length is at 10-20nt; They are special to the O-antigen of intestinal bacteria O120 type; Especially the oligonucleotide of listing in the table 1, they are high specials to the O-antigen of intestinal bacteria O120 type, and these oligonucleotide are also reconfigurable, the oligonucleotide after the combination also is a high special to the O-antigen of intestinal bacteria O120 type.

The above-mentioned oligonucleotide that a further object of the present invention provides can be used as primer and is used for nucleic acid amplification reaction, perhaps be used for hybridization as probe, perhaps be used to make gene chip or microarray, thereby pass through O-antigen and the detection and the identification of escherichia coli O120 type of these methods detections and identification of escherichia coli O120 type.

An also purpose of the present invention has provided the method for complete sequence of the O-antigen gene bunch of separating Escherichia coli O120 type.Can obtain the complete sequence of the O-antigen gene bunch of other bacteriums according to present method operation, the complete sequence of the gene cluster of the bacterium of other polysaccharide antigens that also can obtain to encode.

The objective of the invention is to realize by following technical scheme.

The present invention is to the Nucleotide of the O-antigen-specific of intestinal bacteria O120 type, and it is the isolating Nucleotide shown in SEQ ID NO:1,12485 bases of total length; The base that perhaps has one or more insertions, disappearance or replacement keeps the Nucleotide of the SEQ ID NO:1 of described isolating functional nucleotide simultaneously.

The Nucleotide of aforesaid O-antigen-specific to intestinal bacteria O120 type, comprising called after rmlB, rmlD, rmlA, rmlC wzx, orf6, wzy, orf8, orf9,10 genomic constitutions of orf10 are all between galF gene and gnd gene.

The Nucleotide of aforesaid O-antigen-specific to intestinal bacteria O120 type, the gene that has high degree of specificity in the wherein said gene is: the gene of transhipment enzyme comprises the wzx gene or with wzx the gene of identity function is arranged; Pol gene wzy gene or the gene of identity function is arranged with wzy; Glycosyltransferase gene comprises orf6, orf9, orf10 gene; Wherein said gene: wzx is the Nucleotide of 4636 to 6117 bases among the SEQ ID NO:1; Wzy is the Nucleotide of 6943 to 8202 bases among the SEQ ID NO:1; Orf6 is the Nucleotide of 6114 to 6959 bases among the SEQ ID NO:1; Orf9 is the Nucleotide of 8970 to 9890 bases among the SEQ ID NO:1; Orf10 is the Nucleotide of 9902 to 11005 bases among the SEQ ID NO:1.

The Nucleotide of aforesaid O-antigen-specific to intestinal bacteria O120 type, wherein it also comprises and comes from described wzx gene, wzy gene, glf gene or glycosyltransferase gene orf6, orf9, orf10 gene; And their mixing or their reorganization.

The Nucleotide of aforesaid O-antigen-specific to intestinal bacteria O120 type, the oligonucleotide of the wherein said wzx of coming from gene is to being: the Nucleotide of 4729 to 4744 bases among the SEQ ID NO:1 and the Nucleotide of 5119 to 5134 bases; The Nucleotide of 5575 to 5590 bases among the SEQ IDNO:1 and the Nucleotide of 5939 to 5955 bases.The oligonucleotide that comes from the wzy gene is to being: the Nucleotide of 7123 to 7139 bases among the SEQ ID NO:1 and the Nucleotide of 7582 to 7598 bases; The Nucleotide of 7064 to 7079 bases among the SEQ ID NO:1 and the Nucleotide of 7770 to 7787 bases.

The application of the Nucleotide of aforesaid O-antigen-specific to intestinal bacteria O120 type in detecting other polysaccharide antigen of expressing the antigenic bacterium of O-, the O-antigen of identifying bacterium and bacterium.

The recombinant molecule of the Nucleotide of aforesaid O-antigen-specific to intestinal bacteria O120 type is providing the O-antigen of expressing intestinal bacteria O120 type by inserting to express, and the application in the preparation bacterial vaccine.

The application of the Nucleotide of aforesaid O-antigen-specific to intestinal bacteria O120 type is characterized in that it is used for PCR, is used for hybridization and fluoroscopic examination or is used to make gene chip or microarray as probe as primer, for the application of bacterial detection.

The separation method of the Nucleotide of aforesaid O-antigen-specific to intestinal bacteria O120 type is characterized in that it comprises the steps:

(1) genomic extraction: in substratum, cultivate intestinal bacteria O120 type, centrifugal collecting cell; The genomic dna that obtains detects by agarose gel electrophoresis;

(2) by the O-antigen gene in the pcr amplification intestinal bacteria O120 type bunch: with the genome of intestinal bacteria O120 type is that template is passed through its O-antigen gene of Long pcr amplification bunch, with the PCR product that obtains, detect the size and the specificity thereof of PCR product with agarose gel electrophoresis, merge this long PCR product, and with DNA purification kit purified pcr product;

(3) make up O-antigen gene bunch library: Long PCR purified product is used shotgun make up O-antigen gene bunch library;

(4) to the cloning and sequencing in the library: from the library, select the clone of insertion fragment more than 1kb and the insertion fragment among the clone is checked order with laboratory automatic dna sequencer commonly used, sequence reaches 100% fraction of coverage, thereby obtains all sequences of O-antigen gene bunch;

(5) splicing of nucleotide sequence and analysis: applying biological information science software splicing and edit all sequences, thus obtain the Nucleotide full length sequence of the O-antigen gene bunch of intestinal bacteria O120 type;

(6) screening of specific gene: at wzx, the wzy gene design primer in the O-antigen gene of intestinal bacteria O120 type bunch; Respectively designed two pairs of primers in each gene, every pair of primer is distributed in the different places in the corresponding gene, to guarantee its specificity; Is that template is carried out PCR with these primers with the genomes of 166 strain intestinal bacteria and 43 strain Shigellaes, determines the antigenic high degree of specificity of O-of wzx, wzy gene pairs intestinal bacteria O120 type;

(7) detection of primer sensitivity: cultivate intestinal bacteria O120, after the bacterial count respectively with 5 * 10 ³, 5 * 10 ², 5 * 10 ¹5 and 0 viable bacteria join in a certain amount of certain thing to be detected, sneak into the thing to be detected of bacterium and use sample as detecting, sample is added the LB substratum, getting the LB substratum that some and sample mix cross filters, filtered liquid is cultivated, carried out the PCR reaction as pcr template with oligonucleotide after the peek milliliter is handled from cultured bacterium liquid, detect its sensitivity intestinal bacteria O120.

The separation method of the Nucleotide of aforesaid O-antigen-specific to intestinal bacteria O120 type is characterized in that it comprises the steps:

(1) genomic extraction: 37 ℃ of incubated overnight intestinal bacteria O120 types in the LB of 5mL substratum, centrifugal collecting cell.With 500ul 50mM Tris-HCl (pH8.0) and 10ul 0.4M EDTA re-suspended cell, 37 ℃ of incubations 20 minutes, the N,O-Diacetylmuramidase that adds 10ul 10mg/ml then continues insulation 20 minutes.The Proteinase K, the 15ul 10%SDS that add 3ul 20mg/ml afterwards, 50 ℃ of incubations 2 hours, the RNase that adds 3ul 10mg/ml again, 65 ℃ of incubations 30 minutes, add equal-volume phenol extracting mixture, get supernatant and use isopyknic phenol again: chloroform: primary isoamyl alcohol (25: 24: 1) mixing solutions extracting twice, get supernatant again with isopyknic ether extracting to remove remaining phenol.Supernatant rolls out DNA and washes DNA with 70% ethanol with glass yarn with 2 times of volume ethanol deposit D NA, and DNA is resuspended among the 30ul TE; Genomic dna detects by 0.4% agarose gel electrophoresis;

(2) by the O-antigen gene in the pcr amplification intestinal bacteria O120 type bunch: with the genome of intestinal bacteria O120 type is that template is passed through its O-antigen gene of Long pcr amplification bunch, at first according to the galF sequences Design upstream primer (#1523-ATT GTG GCTGCA GGG ATC AAA GAA AT) that often is found in O-antigen gene bunch promoter region, again according to the gnd gene design downstream primer (#1524-TAG TCG CGT GNG CCT GGA TTA AGT TCG C) in O-antigen gene bunch downstream; With the Expand Long Template PCR method of Boehringer Mannheim company amplification O-antigen gene bunch, the PCR response procedures was as follows: 94 ℃ of pre-sex change 2 minutes; 94 ℃ of sex change are 10 seconds then, annealed 15 seconds for 60 ℃, 68 ℃ were extended 15 minutes, carry out 30 circulations like this, last, continue to extend 7 minutes at 68 ℃, obtain the PCR product, detect the size and the specificity thereof of PCR product with 0.8% agarose gel electrophoresis, merge 5 pipe long PCR products, and with the Wizard PCR Preps purification kit purified pcr product of Promega company;

(3) make up O-antigen gene bunch library: make up O-antigen gene bunch library with the Novagen DNaseI shot gun method that is modified, reaction system is a 300ng PCR purified product, 0.9ul 0.1M MnCl ₂, the DNaseI of the 1mg/ml of 1ul dilution in 1: 2000, reaction is carried out at room temperature, and enzyme is cut the dna fragmentation size is concentrated between the 1.5kb-3kb, then adds 2ul 0.1M EDTA termination reaction.Merge the same reaction system of 4 pipes, with isopyknic phenol extracting once, use isopyknic phenol: chloroform: primary isoamyl alcohol (25: 24: 1) mixing solutions extracting once, after using isopyknic ether extracting once again, dehydrated alcohol deposit D NA with 2.5 times of volumes, and wash precipitation with 70% ethanol, be resuspended at last in the 18ul water, in this mixture, add 2.5ul dNTP (1mMdCTP, 1mMdGTP, 1mMdTTP subsequently, 10mMdATP), 1.25ul the T4DNA polysaccharase of 100mM DTT and 5 units, 11 ℃ 30 minutes, enzyme is cut product mends into flush end, after 75 ℃ of termination reactions, add the Tth archaeal dna polymerase of 5 units and the corresponding damping fluid of tool and system is expanded as 80ul, 70 ℃ of reactions 20 minutes make 3 of DNA ' end add the dA tail.This mixture is through the equal-volume chloroform: after primary isoamyl alcohol (24: 1) mixing solutions extracting and the extracting of equal-volume ether with 3 * 10 of Promega company ^-3The pGEM-T-Easy carrier connect 10 hours in 16 ℃, cumulative volume is 90ul.10 * the buffer of 9ul and the T4DNA ligase enzyme of 25 units are wherein arranged, use the dehydrated alcohol precipitation of the 3M NaAc (pH5.2) of 1/10 volume and 2 times of volumes to be connected mixture at last, wash precipitation with 70% ethanol again, be dissolved in after the drying and obtain connecting product in the 30ul water; Preparation method with the electric transformed competence colibacillus cell of Bi0-Rad company prepares the competence e.colidh5, get after 2-3ul connects product and 50ul competence bacillus coli DH 5 alpha mixes, forward in the electric shock cup of 0.2cm of Bi0-Rad company and shock by electricity, voltage is 2.5 kilovolts, time is 5.0 milliseconds to 6.0 milliseconds, the SOC substratum that adds 1ml after the electric shock immediately in cup makes the bacterium recovery, then bacterium is coated in and contains penbritin, on the LB solid medium of X-Gal and IPTG, 37 ℃ of incubated overnight, obtain blue white bacterium colony next day, with the white colony that obtains promptly the white clone forward on the LB solid medium that contains penbritin and cultivate, from each clone, extract plasmid simultaneously, and cutting the segmental size of evaluation insertion wherein with the EcoRI enzyme, the white that obtains clone group has constituted the O-antigen gene bunch library of intestinal bacteria 0120 types;

(4) to the cloning and sequencing in the library: from the library, select 96 clones of insertion fragment more than 1kb and the insertion fragment among the clone is checked order with this lab A BI3730 type automatic dna sequencer, sequence reaches 100% fraction of coverage, thereby obtains all sequences of O-antigen gene bunch;

(5) splicing of nucleotide sequence and analysis: the Pregap4 and the splicing of Gap4 software of the Staden package software package of publishing with Britain Camb MRC (Medical Research Council) Molecular Biology Lab and edit all sequences, thus obtain the Nucleotide full length sequence of the O-antigen gene bunch of intestinal bacteria O120 type; The quality of sequence is mainly guaranteed by two aspects: 1) genome of intestinal bacteria O120 type is done 5 Long PCR reactions, mix these products then to produce the library, 2) to each base, guarantee high-quality fraction of coverage more than 3, after obtaining the nucleotide sequence of intestinal bacteria O120 type O-antigen gene bunch, with American National biotechnology information science center (The National Center forBiotechnology Information, NCBI) orffinder finds gene, find the reading frame of 10 openings, determine also that with the function of finding the reading frame that these are open what gene they are with the genetic comparison among the blast groupware and the GenBank, finish gene annotation with the Artemis software at Britain sanger center again, do accurate comparison between DNA and protein sequence with Clustral W software, obtain the structure of the O-antigen gene bunch of intestinal bacteria O120 type at last;

(6) screening of specific gene: at wzx, the wzy gene design primer in the O-antigen gene of intestinal bacteria O120 type bunch; Respectively designed two pairs of primers in each gene, every pair of primer is distributed in the different places in the corresponding gene, to guarantee its specificity; Is that template is carried out PCR with these primers with the genomes of 166 strain intestinal bacteria and 43 strain Shigellaes, except that a band that in containing the 13rd group of intestinal bacteria O120, has obtained the expection size, the correct product of the expection clip size that all do not increase in other groups is so the O-antigen of wzx, wzy gene pairs intestinal bacteria O120 type all is high special.

(7) detection of primer sensitivity: buy the live pig meat stuffing on the market, stir, be divided into the 20g portion, exist in-40 ℃ of refrigerators standby.The frozen bacterium liquid of 10 μ l intestinal bacteria O120 is inoculated in the triangular flask of 20ml LB substratum, in 37 ℃, 200 rev/mins, cultivate 12 hours to saturated, the cultured bacterium liquid that takes a morsel is done 106 and 107 times dilution, remaining bacterium liquid is put in 4 ℃ the refrigerator standby, get 50 μ l dilution bacterium liquid coating LB agar plate, 37 degree are cultivated 12h, to being coated with plate count, calculate viable bacteria concentration in the stoste.In 5 portions of live pig meat stuffings, mix 5 * 10 respectively ³, 5 * 10 ², 5 * 10 ¹, 5 and 0 viable bacteria stir, and add 200ml LB substratum, and through 6 layers of filtered through gauze, filtered liquid 200 rev/mins, is cultivated 12h in 37 ℃.Get 3ml bacterium liquid in 6 from cultured bacterium liquid, centrifugal 5 minutes of 000g removes supernatant, adds 100 μ l MQ ultrapure waters and blows precipitation and mixing open, puts into 100 degree boiling water and boils 15 minutes, and lysate is in 12, and centrifugal 8 minutes of 000g gets 1 μ supernatant as pcr template.Right with 4 pairs of oligonucleotide, the Nucleotide of 4729 to 4744 bases among the SEQ ID NO:1 and the Nucleotide of 5119 to 5134 bases; The Nucleotide of 5575 to 5590 bases among the SEQ IDNO:1 and the Nucleotide of 5939 to 5955 bases; The Nucleotide of 7123 to 7139 bases among the SEQ ID NO:1 and the Nucleotide of 7582 to 7598 bases; The Nucleotide of 7064 to 7079 bases among the SEQ ID NO:1 and the Nucleotide of 7770 to 7787 bases carry out the PCR reaction, and the PCR reaction system is as follows: MQ:15.7 μ l, Mg ²⁺: 2.5 μ l, Buffer:2.5 μ l, dNTP:1 μ l, Taq enzyme: 0.3 μ l, P1:1 μ l, P2:1 μ l, template DNA: 1 μ l.The PCR reaction conditions is: 95 ℃: 5 ', 95 ℃: 30 ", 56 ℃: 45 ", 72 ℃: 1 ', 72 ℃: 5 ', totally 30 circulations.Reaction is got 10 μ l reaction product electrophoresis after finishing, if the amplified band that conforms to the expection size is arranged, then the result is positive, if do not have, then the result is negative.Participated in 5 * 10 ³, 5 * 10 ², 5 * 10 ¹And every part of pork filling of 5 viable bacterias all obtains positive findings in the PCR of 4 pairs of primers reaction.The pork filling that participates in 0 viable bacteria obtains negative findings in the PCR of 4 pairs of primers reaction.Illustrate that these 4 pairs of primers are 0.25 bacterium/g to the detection sensitivity of the intestinal bacteria O120 in the pork filling when using aforesaid method.

Just, first aspect of the present invention provides the full length nucleotide sequence of the O-antigen gene bunch of intestinal bacteria O120 type, its complete sequence shown in SEQ ID NO:1,12485 bases of total length; The base that perhaps has one or more insertions, disappearance or replacement keeps the Nucleotide of the SEQ ID NO:1 of described isolating functional nucleotide simultaneously.Obtained the structure of the O-antigen gene bunch of intestinal bacteria O120 type by method of the present invention, as shown in table 3, it comprises called after rmlB, rmlD, rmlA, rmlC, wzx, orf6, wzy, orf8, orf9,10 genomic constitutions of orf10 are all between galF gene and gnd gene.

Second aspect of the present invention provides the gene in the O-antigen gene bunch of intestinal bacteria O120 type, promptly transports enzyme gene (wzx gene or the gene of identity function arranged with wzx); Pol gene (wzy gene or the gene of identity function arranged with wzy); Glycosyltransferase gene (orf6, orf9, orf10 gene).Their zero positions in O-antigen gene bunch and final position and nucleotide sequence all are listed in the table 4; The invention particularly relates to glycosyltransferase gene, transhipment enzyme gene and pol gene, because sugared synthesis path gene is that the gene of synthetic nucleosides bisphosphate monose is common, common by indication to more exocellular polysaccharide now, O-antigen to bacterium is not very special, and the glycosyltransferase gene that the present invention relates to, transhipment enzyme gene and pol gene are high specials to the O-antigen of intestinal bacteria O120 type.

The 3rd aspect of the present invention, wzx gene in the O-antigen gene bunch that comes from intestinal bacteria O120 type is provided or the gene, wzy gene of identity function is arranged or the gene and the glycosyltransferase gene of identity function are arranged with wzy with wzx, the oligonucleotide that comprises orf6, orf9, orf10 gene, they are any one section oligonucleotide in these genes.But, be that the oligonucleotide of listing in the table 1 is right preferentially by usefulness, in table 1, also listed these oligonucleotide to the position in O-antigen gene bunch and with these oligonucleotide to being the size of the product of the PCR reaction done of primer, the annealing temperature in these PCR reaction free lists is carried out.These primers are except that a band that has obtained the expection size in the 13rd group, and any product that all do not increase in other groups is so the O-antigen of wzx, wzy gene pairs intestinal bacteria O120 type all is high special.

The separation method of the Nucleotide of described O-antigen-specific to intestinal bacteria O120 type comprises the steps: 1) genomic extraction; 2) the O-antigen gene in the pcr amplification intestinal bacteria O120 type bunch; 3) make up O-antigen gene bunch library; 4) to the cloning and sequencing in the library; 5) splicing of nucleotide sequence and analysis; 6) screening of specific gene; 7) detection of primer sensitivity.

Other aspects of the present invention are because disclosing of the technology of this paper is conspicuous to those skilled in the art.

As used herein, " oligonucleotide " mainly refers to derive from one section nucleic acid molecule in the gene of the gene of gene, coding transhipment enzyme of the encoding glycosyl transferring enzyme in the O-antigen gene bunch and coding polysaccharase, they can change on length, generally change in 10 to 20 Nucleotide scopes; More definite these oligonucleotide of saying are to come from wzx gene (nucleotide position is the Nucleotide of 4636 to 6117 bases from SEQ ID NO:1); Wzy gene (nucleotide position is the Nucleotide of 6943 to 8202 bases from SEQ ID NO:1).Coming from above intragenic oligonucleotide is high special to intestinal bacteria O120 type.

In addition, the antigenic gene cluster of the different O-of the coding of two genetic resemblances produces new O-antigen by gene recombination or sudden change sometimes, thereby produces new bacteria types, new mutant strain.At this environment, need filter out many specificitys that oligonucleotide is detected with raising with recombination hybridization.Therefore, the invention provides a whole set of many mixtures to oligonucleotide, they come from glycosyltransferase gene; Come from transhipment enzyme and pol gene, comprise the wzx gene or the gene, wzy gene of identity function arranged or the gene of identity function is arranged with wzy with wzx.The mixture of these genes is special to a special bacterial polysaccharides antigen, is special thereby make this cover oligonucleotide to the polysaccharide antigen of this bacterium.More particularly, the mixture of these oligonucleotide is to come from glycosyltransferase gene, wzx gene or the gene, wzy gene of identity function arranged or with wzy the combination of the oligonucleotide in the gene of identity function is arranged with wzx.

On the other hand, the present invention relates to the evaluation of oligonucleotide, they can be used for detecting the O-antigen of expressing the antigenic bacterium of O-and identifying bacterium in diagnosis.

The present invention relates to a kind of antigenic method of one or more bacterial polysaccharideses that detects in the food, these antigens can make sample can with the oligonucleotide specific hybrid of following at least one gene, these genes are: (i) gene of the encoding glycosyl transferring enzyme gene of transhipment enzyme and polysaccharase of (ii) encoding comprises the wzx gene or the gene, wzy gene of identity function is arranged or with wzy the gene of identity function is arranged with wzx.At least one oligonucleotide can be hybridized with at least one more than one such gene specific of expressing the special antigenic bacterium of O-under the situation of condition permission, and these bacteriums are intestinal bacteria O120 types.Available PCR method detects, more can with behind the Nucleotide mark in the inventive method as probe by hybridization such as southern-blot or fluoroscopic examination, perhaps by antigen and bacterium in gene chip or the microarray assay sample.

Planner of the present invention considers following situation: when one special oligonucleotide detects when invalid, the mixture of oligonucleotide can with the target region specific hybrid with test sample.Therefore the invention provides a cover oligonucleotide and be used for detection method of the present invention.Here said oligonucleotide is meant the gene that comes from the encoding glycosyl transferring enzyme, the gene of coding transhipment enzyme and the gene of polysaccharase, comprises the wzx gene or the gene, wzy gene of identity function is arranged or with wzy the oligonucleotide of the gene of identity function is arranged with wzx.This cover oligonucleotide is special to the O-antigen of a special bacterium, and this special bacterium O-antigen is expressed by intestinal bacteria O120 type.

On the other hand, the present invention relates to a kind of antigenic method of one or more bacterial polysaccharideses that detects in the movement, these antigens can make sample can with the oligonucleotide specific hybrid of following at least one gene, these genes are: (i) gene of the encoding glycosyl transferring enzyme gene of transhipment enzyme and polysaccharase of (ii) encoding comprises the wzx gene or the gene, wzy gene of identity function is arranged or with wzy the gene of identity function is arranged with wzx.At least one oligonucleotide can be expressed more than one such gene specific hybridization of the special antigenic bacterium of O-with at least one under the situation of condition permission.These bacteriums are intestinal bacteria O120 types.Oligonucleotide among available the present invention is made the method test sample of primer by PCR, also can with behind the oligonucleotide molecules mark among the present invention as probe by hybridization such as southern-blot or fluoroscopic examination, perhaps by antigen and bacterium in gene chip or the microarray assay sample.

General a pair of oligonucleotide may with same gene recombination also can with different gene recombinations, but must have in them an oligonucleotide can specific hybrid to the distinguished sequence of special antigenic type, other oligonucleotide can be hybridized in non-specific zone.Therefore, when the oligonucleotide in the special polysaccharide antigen gene cluster is reconfigured, can select specific gene mixture hybridization in a pair of oligonucleotide and the polysaccharide antigen gene cluster at least, perhaps select many mixture hybridization oligonucleotide and specific gene.Even even when all genes were all unique in the specific genes bunch, this method also can be applied to discern the nucleic acid molecule of the gene mixture in this gene cluster.Therefore the invention provides a whole set of is used to detect the many to oligonucleotide of the inventive method, many here is that the gene of the gene that comes from the encoding glycosyl transferring enzyme, coding transhipment enzyme and polysaccharase comprises the wzx gene or the gene, wzy gene of identity function arranged or with wzy the gene of identity function is arranged with wzx to oligonucleotide, this cover oligonucleotide is special to a special bacterial polysaccharides, and this cover oligonucleotide may be the Nucleotide of necessary gene during sugar synthesizes.

On the other hand, the present invention also relates to the antigenic method of one or more bacterial polysaccharideses in the sample that a kind of detection comes from patient.One or more bacterial polysaccharides antigens in the sample can make sample can with a specific hybrid in a pair of oligonucleotide in following at least one gene, these genes are: (i) gene of the encoding glycosyl transferring enzyme gene of transhipment enzyme and polysaccharase of (ii) encoding comprises the wzx gene or the gene, wzy gene of identity function is arranged or with wzy the gene of identity function is arranged with wzx.Under the situation of condition permission at least one oligonucleotide can with sample at least one express more than one such gene specific hybridization of the special antigenic bacterium of O-, these bacteriums are intestinal bacteria O120 types.Oligonucleotide among available the present invention is made the method test sample of primer by PCR, also can will pass through hybridization as probe behind the oligonucleotide mark among the present invention, perhaps by antigen and bacterium in gene chip or the microarray assay sample.

In more detail, method described above can be understood as when oligonucleotide when being used, it is not to derive from glycosyltransferase gene, wzx gene or with wzx the gene, wzy gene of identity function arranged or have on the sequence of gene of identity function with wzy that one of them oligonucleotide molecules can hybridize to one.In addition, when two oligonucleotide can both be hybridized, they may be hybridized in same gene and also may hybridize on the different genes.Also promptly, when cross reaction goes wrong, can select the mixture of oligonucleotide to detect the blended gene so that the specificity of detection to be provided.

The present inventor believes that the present invention is not necessarily limited to the above nucleotide sequence coded specific O-antigen of carrying, and is widely used in detecting all expression O-antigens and identifies the antigenic bacterium of O-.And because O-antigen is synthetic and the similarity of other polysaccharide antigens (as bacterium born of the same parents exoantigen) between synthesizing, method of the present invention and molecule also are applied to these other polysaccharide antigen.

The present invention discloses the full length sequence of the O-antigen gene bunch of intestinal bacteria O120 type first, and can from the sequence of this total length gene cluster of not cloned, produce recombinant molecule, can produce the O-antigen of expressing intestinal bacteria O120 type by inserting to express, and become useful vaccine.

Embodiment

Below in conjunction with specific embodiment, further set forth the present invention.Should understand these embodiment only is used to the present invention is described and is not used in and limit the scope of the invention.The experimental technique of unreceipted actual conditions in the following example, usually according to people such as normal condition such as Sambrook, molecular cloning: the condition described in the laboratory manual (NewYork:Cold Spring Harbor Laboratory Press, 1989).

Embodiment 1: genomic extraction:

37 ℃ of incubated overnight intestinal bacteria O120 types in the LB of 5mL substratum, centrifugal collecting cell.With 500ul 50mM Tris-HCl (pH8.0) and 10ul 0.4M EDTA re-suspended cell, 37 ℃ of incubations 20 minutes, the N,O-Diacetylmuramidase that adds 10ul 10mg/ml then continues insulation 20 minutes.The Proteinase K, the 15ul 10%SDS that add 3ul 20mg/ml afterwards, 50 ℃ of incubations 2 hours add the RNase of 3ul 10mg/ml again, 65 ℃ of incubations 30 minutes.Add equal-volume phenol extracting mixture, get supernatant and use isopyknic phenol again: chloroform: primary isoamyl alcohol is taken out (25: 24: 1) mixing solutions and is carried twice, get supernatant again with isopyknic ether extracting to remove remaining phenol, supernatant is with 2 times of volume ethanol deposit D NA, roll out DNA and wash DNA with glass yarn, at last DNA is resuspended among the 30ul TE with 70% ethanol.Genomic dna detects by 0.4% agarose gel electrophoresis.

Embodiment 2: by the O-antigen gene in the pcr amplification intestinal bacteria O120 type bunch:

With the genome of intestinal bacteria O120 type is that template is passed through its O-antigen gene of Long pcr amplification bunch.At first according to the galF sequences Design upstream primer (#1523-ATT GTG GCT GCA GGG ATC AAA GAA AT) that often is found in O-antigen gene bunch promoter region, again according to the gnd gene design downstream primer (#1524-TAG TCG CGT GNG CCT GGATTA AGT TCG C) in O-antigen gene bunch downstream; With the Expand Long Template PCR method of Boehringer Mannheim company amplification O-antigen gene bunch, the PCR response procedures was as follows: 94 ℃ of pre-sex change 2 minutes; 94 ℃ of sex change are 10 seconds then, 60 ℃ of annealing 15 seconds, and 68 ℃ were extended 15 minutes, and carried out 30 circulations like this.At last, continue to extend 7 minutes at 68 ℃, obtain the PCR product, the agarose gel electrophoresis with 0.8% detects the size and the specificity thereof of PCR product.Merge 5 pipe long PCR products, and with the Wizard PCR Preps purification kit purified pcr product of Promega company.

Embodiment 3: make up O-antigen gene bunch library:

At first be the acquisition that connects product: make up O-antigen gene bunch library with the Novagen DNaseI shot gun method that is modified.Reaction system is a 300ng PCR purified product, 0.9ul 0.1M MnCl ₂, 1ul1: the DNaseI of the 1mg/ml of 2000 dilutions, reaction is carried out at room temperature.Enzyme is cut the dna fragmentation size is concentrated between the 1.5kb-3kb, then adds 2ul 0.1M EDTA termination reaction.Merge the same reaction system of 4 pipes, with isopyknic phenol extracting once, use isopyknic phenol: chloroform: primary isoamyl alcohol (25: 24: 1) mixing solutions extracting once, after using isopyknic ether extracting once again, dehydrated alcohol deposit D NA with 2.5 times of volumes, and wash precipitation with 70% ethanol, be resuspended at last in the 18ul water.In this mixture, add 2.5ul dNTP (1mMdCTP subsequently, 1mMdGTP, 1mMdTTP, 10mMdATP), the T4DNA polysaccharase of 1.25ul 100mM DTT and 5 units, 11 ℃ 30 minutes, enzyme is cut product mend into flush end, after 75 ℃ of termination reactions, add the Tth archaeal dna polymerase of 5 units and corresponding damping fluid thereof and system is expanded as 80ul, 70 ℃ were reacted 20 minutes, made 3 of DNA ' end add the dA tail.This mixture is through the equal-volume chloroform: after primary isoamyl alcohol (24: 1) mixing solutions extracting and the extracting of equal-volume ether with 3 * 10 of Promega company ^-3The pGEM-T-Easy carrier connect 10 hours in 16 ℃, cumulative volume is 90ul.10 * the buffer of 9ul and the T4DNA ligase enzyme of 25 units are wherein arranged.Use the dehydrated alcohol precipitation of the 3M NaAc (pH5.2) of 1/10 volume and 2 times of volumes to be connected mixture at last, wash precipitation with 70% ethanol again, be dissolved in after the drying and obtain connecting product in the 30ul water.

Next is the preparation of competent cell: the method that provides with reference to Bio-Rad company prepares the competent cell bacillus coli DH 5 alpha.Get a ring bacillus coli DH 5 alpha list bacterium colony in the LB of 5ml substratum, 180rpm cultivated after 10 hours, got in the LB substratum that the 2ml culture is transferred to 200ml, and 37 ℃ of 250rpm thermal agitations are cultivated OD600 about 0.5, ice bath cooling was 20 minutes then, in centrifugal 15 minutes of 4 ℃ of 4000rpm.Confide all supernatant, dispel thalline, in centrifugal 15 minutes of 4 ℃ of 4000rpm with the deionization aqua sterilisa 200ml of cold ice precooling.Deionization aqua sterilisa 100ml with cold ice precooling dispelled thalline again, in centrifugal 15 minutes of 4 ℃ of 4000rpm.With 10% glycerine suspension cell of cold ice precooling, centrifugal 10 minutes of 4 ℃ of 6000rpm abandon supernatant, precipitate 10% glycerine suspension cell with the precooling of 1ml ice at last, are competent cell.The competent cell that makes is packed as 50ul one pipe ,-70 ℃ of preservations.

Be electric transformed competence colibacillus cell at last: get after 2-3ul connects product and 50ul competence bacillus coli DH 5 alpha mixes, forward in the electric shock cup of 0.2cm of Bio-Rad company and shock by electricity, voltage is 2.5 kilovolts, and the time is 5.0 milliseconds-6.0 milliseconds.The SOC substratum that adds 1ml after the electric shock immediately in cup makes the bacterium recovery.Immediately bacterium is coated in 37 ℃ of inversion incubated overnight on the LB solid medium that contains penbritin, X-Gal and IPTG then, obtains blue white bacterium colony next day.With the white colony that obtains promptly the white clone forward on the LB solid medium that contains penbritin and cultivate, from each clone, extract plasmid and cut the segmental size of evaluation insertion wherein simultaneously, obtain the O-antigen gene bunch library that white clone group has constituted intestinal bacteria O120 type with the EcoRI enzyme.

Embodiment 4: to the cloning and sequencing in the library:

From the library, select insert 96 clones of fragment more than 1kb with this lab A BI3730 type automatic dna sequencer to unidirectional order-checking of insertion fragment among the clone, make sequence reach 100% fraction of coverage, thus all sequences of acquisition O-antigen gene bunch.

Embodiment 5: the splicing of nucleotide sequence and analysis:

The Pregap4 and the splicing of Gap4 software of the Staden package software package of publishing with Britain Camb MRC (Medical Research Council) Molecular Biology Lab and edit all sequences, thus the Nucleotide full length sequence (seeing sequence list) of the O-antigen gene bunch of intestinal bacteria O120 type obtained.The quality of sequence is mainly guaranteed by two aspects: 1) genome of intestinal bacteria O120 type is done 5 Long PCR reactions, mix these products then to produce the library.2), guarantee high-quality fraction of coverage more than 3 to each base.After obtaining the nucleotide sequence of intestinal bacteria O120 type O-antigen gene bunch, with American National biotechnology information science center (The National Center for BiotechnologyInformation, NCBI) orffinder finds gene, find the reading frame of 10 openings, determine also that with the function of finding the reading frame that these are open what gene they are with the genetic comparison among the blast groupware and the GenBank, finish gene annotation with the Artemis software at Britain sanger center again, do accurate comparison between DNA and protein sequence with ClustralW software, obtain the structure of the O-antigen gene bunch of intestinal bacteria O120 type at last, as shown in table 3.

By retrieving and comparing, the albumen of finding rmlB genes encoding in orf1 encoded protein and the Shigella boydii O-antigen gene bunch has 98% consensus amino acid sequence, by search, find the very high (Evalue=1.6 * e of homology desired value of the consensus sequence of orf1 encoded protein and known RmlB to Pfam protein-based order sequenced data storehouse ^-213).The albumen of rmlD genes encoding has 97% consensus amino acid sequence in the albumen of Orf2 genes encoding and the Shigella boydii O-antigen gene bunch, by search, find the very high (Evalue=2.6 * e of homology desired value of the consensus sequence of orf2 encoded protein and known RmlD to Pfam protein-based order sequenced data storehouse ^-74).The albumen of rmlA genes encoding has 98% consensus amino acid sequence in the albumen of orf3 genes encoding and the Shigellaboydii O-antigen gene bunch, by search, find the very high (Evalue=1.8 * e of homology desired value of the consensus sequence of orf3 encoded protein and known RmlA to Pfam protein-based order sequenced data storehouse ^-118).The albumen of rmlC genes encoding has 84% consensus amino acid sequence in the albumen of orf4 genes encoding and the Shigella boydii O-antigen gene bunch, by search, find the very high (Evalue=1.2 * e of homology desired value of the consensus sequence of orf4 encoded protein and known RmlC to Pfam protein-based order sequenced data storehouse ^-125).RmlBDAC is responsible for a kind of rare monose in the synthetic rhamnosyl O-antigen.Therefore we are rmlB with these four unnamed genes, D, A, and C.

Orf5 and orf7 are the proteic genes that there is transmembrane segment in only two codings of intestinal bacteria O120 kind.The O-antigen transferring enzyme of orf5 encoded protein and Shigella boydii (AAL27344) has 43% sequence identity, it contains 13 uniform transmembrane segments by the proteic topology discovery of HMMTOP2.0 programanalysis, and this is the proteic characteristic feature of Wzx.So name orf5 is wzx.The O-antigen polysaccharase of orf7 encoded protein and intestinal bacteria (AAK64372) has 23% consistence, 43% similarity, it contains 10 transmembrane segments by the proteic topology discovery of HMMTOP2.0 programanalysis, and hydrophilic loop (loop) in the big kytoplasm is arranged, and this is the proteic characteristic feature of Wzy.So name orf7 is wzy.

Orf6, the albumen of 9 and 10 3 genes encodings and other known glycosyltransferases have the sequence identity of 35-44% and the sequence similarity of 53-62%.By search to glycosyltransferase motif database among the Pfam, the homology desired value of the consensus sequence of the albumen of these three genes encodings and known glycosyltransferase family is very high, therefore we infer this three genes encoding glycosyltransferases, and because each glycosyltransferase specificity catalysis forms a kind of disaccharide bond, so we infer that the antigenic oligosaccharide unit of O-of intestinal bacteria O120 may be made up of four monose.Because the definite function of these three genes can't be determined, so we are with these two genes temporary called after orf6, orf9 and orf10.

The Epsl1P of coding has 29% consensus amino acid sequence in the albumen of orf8 genes encoding and the Streptococcus thermophilus O-antigen gene bunch, because the definite function of this gene can't be determined, so we are with the temporary called after orf8 of this gene.

Embodiment 6: the screening of specific gene:

Wzx, wzy gene design primer in the O-antigen gene of intestinal bacteria O120 type bunch have respectively designed two pairs of primers in each gene, every pair of primer is distributed in different local in the corresponding gene, to guarantee its specificity; Is that template is carried out PCR with these primers with the genomes of 166 strain intestinal bacteria and 43 strain Shigellaes, except that the band that in containing the 13rd group of intestinal bacteria O120, has obtained the expection size, the correct product of the expection clip size that all do not increase in other groups is so the O-antigen of wzx, wzy gene pairs intestinal bacteria O120 type all is high special; The position of these genes in nucleotide sequence sees Table 1.

Embodiment 7: the detection of primer sensitivity.

Buy the live pig meat stuffing on the market, stir, be divided into the 20g portion, exist in-40 ℃ of refrigerators standby.The frozen bacterium liquid of 10 μ l intestinal bacteria O120 is inoculated in the triangular flask of 20ml LB substratum, in 37 ℃, 200 rev/mins, cultivate 12 hours to saturated, the cultured bacterium liquid that takes a morsel is done 106 and 107 times dilution, remaining bacterium liquid is put in 4 ℃ the refrigerator standby, get 50 μ l dilution bacterium liquid coating LB agar plate, 37 degree are cultivated 12h, to being coated with plate count, calculate viable bacteria concentration in the stoste.In 5 portions of live pig meat stuffings, mix 5 * 10 respectively ³, 5 * 10 ², 5 * 10 ¹, 5 and 0 viable bacteria stir, and add 200ml LB substratum, and through 6 layers of filtered through gauze, filtered liquid 200 rev/mins, is cultivated 12h in 37 ℃.Get 3ml bacterium liquid in 6 from cultured bacterium liquid, centrifugal 5 minutes of 000g removes supernatant, adds 100 μ l MQ ultrapure waters and blows precipitation and mixing open, puts into 100 degree boiling water and boils 15 minutes, and lysate is in 12, and centrifugal 8 minutes of 000g gets 1 μ supernatant as pcr template.Right with 4 pairs of oligonucleotide, the Nucleotide of 4729 to 4744 bases among the SEQ ID NO:1 and the Nucleotide of 5119 to 5134 bases; The Nucleotide of 5575 to 5590 bases among the SEQ ID NO:1 and the Nucleotide of 5939 to 5955 bases.The Nucleotide of 7123 to 7139 bases among the SEQ ID NO:1 and the Nucleotide of 7582 to 7598 bases; The Nucleotide of 7064 to 7079 bases among the SEQ ID NO:1 and the Nucleotide of 7770 to 7787 bases carry out the PCR reaction, and the PCR reaction system is as follows: MQ:15.7 μ l, Mg ²⁺: 2.5 μ l, Buffer:2.5 μ l, dNTP:1 μ l, Taq enzyme: 0.3 μ l, P1:1 μ l, P2:1 μ l, template DNA: 1 μ l.The PCR reaction conditions is: 95 ℃: 5 ', 95 ℃: 30 ", 56 ℃: 45 ", 72 ℃: 1 ', 72 ℃: 5 ', totally 30 circulations.Reaction is got 10 μ l reaction product electrophoresis after finishing, if the amplified band that conforms to the expection size is arranged, then the result is positive, if do not have, then the result is negative.Participated in 5 * 10 ³, 5 * 10 ², 5 * 10 ¹And every part of pork filling of 5 viable bacterias all obtains positive findings in the PCR of 4 pairs of primers reaction.The pork filling that participates in 0 viable bacteria obtains negative findings in the PCR of 4 pairs of primers reaction.Illustrate that these 4 pairs of primers are 0.25 bacterium/g to the detection sensitivity of the intestinal bacteria O120 in the pork filling when using aforesaid method.

By clone and the expression in the vaccine strains of attenuation, can set up recombiant vaccine to O antigen gene bunch.O antigen is the surface antigen of topmost Gram-negative bacteria, can cause the intensive immune response, is one of best target molecule of making recombiant vaccine.Viret laboratory success in 1993 the O antigen gene of Shigellae Sonnei bunch is expressed in a strain Salmonellas Tyziai vaccine bacterium, experimentation on animals proof can cause rabbit immune response (Molecular Microbiology 1993,7:239-252).The group of China Military Medical Science Institute also similarly works being engaged in the Viret laboratory.Bunch express the O antigen gene of intestinal bacteria O111 success in 1999 in the Wang Lei laboratory in salmonella vaccine STM-1, and the bacterial strain set up of proof can cause the blood of mouse and humoral response (Microbial Pathogenesis 1999,27:55-59).So the O antigen-specific gene order of O120 of the present invention can be applied to set up recombiant vaccine.

Nucleotide sequence (shown in the SEQ IDNO:1) according to the O-antigen-specific to intestinal bacteria O120 type of the present invention, structure specific nucleic acid probe, be fixed on the carrier of chip and make biochip, after the sample that will detect is suitably handled, carry out hybridization with biochip, utilize the biochip signal analysis equipment just can obtain corresponding bacteria situation in the sample then.The DNA chip that this intestinal bacteria O antigen is identified can be directly used in clinical and other check place (as food-processing and production industry, the Micro biological Tests of animal and veterinary industry customs quarantine control etc.).This chip only need enlarge output, just can industrialization under identical condition.

Table 1 has been listed glycosyltransferase gene and oligosaccharide unit treatment gene and intragenic primer and PCR data in the O antigen gene bunch of intestinal bacteria O120 type.Glycosyltransferase gene, transhipment enzyme gene and pol gene and their function corresponding and the size of the O antigen gene bunch of intestinal bacteria O120 type in table, have been listed.In each gene, we have respectively designed two pairs of primers, and the difference that every pair of primer is distributed in the corresponding gene is local to guarantee its specificity.In table, also listed position and the size of each primer in SEQ IDNO:1.Is that template carry out PCR with listed corresponding annealing temperature in the table with the genomes of all bacterium in the table 2 with every pair of primer, has obtained corresponding PCR product, and its size is also listed in the table.

Table 2 is 166 strain intestinal bacteria and 43 strain Shigellaes and their sources that are used to screen specific gene, and for the convenience that detects, we are divided into one group with their every 12-19 bacterium, and 12 groups altogether, all list in the table in their source.

The genomic dna that contains intestinal bacteria O120 type in the 13rd group is as positive control.Do template with every group of bacterium, be PCR by following condition with every pair in the table 1 primer: 95 ℃ of pre-sex change after 5 minutes, 95 ℃ of sex change 30 seconds, annealing time is 30 seconds, temperature sees Table 1,72 ℃ extended 2 minutes, carried out 25 circulations like this.Continue to extend 5 minutes at 72 ℃ at last, reaction system is 25ul.Template is dilution in 1: 20, gets 1 μ l.After reaction finishes, get the 10ulPCR product and detect the fragment that amplifies by 0.8% agarose gel electrophoresis.

For wzx, wzy gene, each gene all has two pairs of primers detected, every pair of primer has obtained except be PCR in the 13rd group after the correct band of expection size, the correct band of any size does not all increase in other groups, that is to say, not obtaining any PCR product band in the array mostly, so wzx, wzy gene pairs intestinal bacteria O120 type and O-antigen thereof are high specials.

At last, from intestinal bacteria O120 type, screen gene by PCR: wzx, wzy to the O-antigen high special of intestinal bacteria O120 type.And the oligonucleotide of these intragenic any one section 10-20nt is special to the O-antigen of intestinal bacteria O120 type, and the primer in especially above-mentioned each gene is that oligonucleotide is high special to detecting the back confirmation through PCR to intestinal bacteria O120 type.These all oligonucleotide all can be used for the intestinal bacteria O120 type in the human body and environment rapidly and accurately, and can identify their O-antigen.

Table 3 is structural tables of the O-antigen gene bunch of intestinal bacteria O120 type, in table, listed the structure of the O-antigen gene bunch of intestinal bacteria O120 type, altogether by 10 genomic constitutions, each gene box indicating, and in square frame, write the title of gene, numeral be the order of the open reading frame (orf) in the O-antigen gene bunch.Two ends at O-antigen gene bunch are galF gene and gnd gene, and they do not belong to O-antigen gene bunch, and we are just with the increase full length sequence of O-antigen gene bunch of their one section sequences Design primer.

Table 4 is site plan of the gene in the O-antigen gene bunch of intestinal bacteria O120 type, listed the accurate position of all open reading frame in complete sequence in the O-antigen gene bunch of intestinal bacteria O120 type in the drawings, at the underscoring of the initiator codon and the terminator codon of each open reading frame.The initiator codon of open reading frame has two in intestinal bacteria: ATG and GTG.

SEQ ID NO:1 sequence (SEQUENCE LISTING)

＜110〉Tianjin Biochip Technology Co., Ltd

＜120〉to the Nucleotide of the O antigen-specific of intestinal bacteria O120 type

＜130〉to the Nucleotide of the O antigen-specific of intestinal bacteria O120 type

<160>1

<170>PatentIn version 3.2

<210>1

<211>12485

<212>DNA

<213>Escherichia coli

<400>1

attgtggctg cagggatcaa agaaatcctc ctggtgactc atgcgtccaa gaacgcggtc 60

gaaaaccact tcgacacctc ttatgaatta gaatctctcc ttgaactgcg cgtgaagcgt 120

caactgctgg cggaagtaca gtccatctgt ccgccgggcg tgaccattat gaacgtgcgt 180

cagggcgaac ctttaggttt aggccactct attttgtgtg cacgacccgc cattggtgac 240

aatccatttg tcgtggtact gccggacgtt gttatcgatg atgccagcgc cgacccgctg 300

cgttacaacc ttgccgctat gattgcgcgc ttcaacgaaa cgggacgcag ccaggtgctg 360

gcaaaacgta tgccgggtga cctctccgaa tactccgtca tccagaccaa agagccgctg 420

gaccgtgagg gtaaagtcag ccgcattgtt gaatttatcg aaaaaccgga tcagccgcag 480

acgctggact cagacatcat ggccgtaggt cgctatgtgc tttctgccga tatttggccg 540

gaactggaac gtactcagcc tggtgcatgg ggacgtattc agctgactga tgctattgcc 600

gagctggcga aaaaacaatc cgttgatgca acgctgatga ccggcgacag ttacgactgc 660

ggcaaaaaaa tgggctatat gcaggcgttt gtgaagtatg gcctacgcaa cctgaaagaa 720

gggacgaagt tccgtaaagg tattgagaag ctgttaagcg aataatgaaa atctgaccgg 780

atgtaacggt tgataagaaa attataacgg cagtgaagat ttgcagcaaa agtaatttgt 840

tgcgaatatt cctgccgttg ttttatataa accatcagaa taacaacgag ttagcagtag 900

ggttttagtc aaagttttcc aggattttcc ttgtttccag agcggattgg taagacaatt 960

agcgtttgaa tttttcgggt ttggcgcgag tgggtaaagc tcgtcacatc gtagacatgc 1020

atgcagtgct ctggtagctg taaagccagg ggcggtagcg tgcattaata cctctattaa 1080

tcaaactgag agccgcttat ttcacagcat gctctgaagt aatatggaat aaattaagtg 1140

aaaatacttg ttactggtgg cgcaggattt attggttctg ctgtagttcg tcacattata 1200

aataatacgc aggatagtgt tgttaatgtc gataaattaa cgtacgccgg aaacctggaa 1260

tcacttgctg atgtttctga ttccgaacgc tatgtttttg aacatgcgga tatttgcgat 1320

gcagctgtaa tggcacggat ttttgctcag catcagccgg atgcagtgat gcacctggct 1380

gctgaaagcc atgttgaccg ttcaattaca ggtcctgcgg catttattga aaccaatatt 1440

gttggtactt atgtcctttt ggaagccgct cgcaattact ggtctgctct tgatggcgac 1500

aagaaaaata gcttccgttt tcatcatatt tctactgacg aagtctatgg tgatttgcct 1560

catcctgacg aggtaaataa tacagaagaa ttacccttat ttactgagac aacagcttac 1620

gcgccaagca gcccttattc cgcatccaaa gcatccagcg atcatttagt ccgcgcgtgg 1680

aaacgtacct atggtttacc gaccattgtg actaattgct ctaacaatta tggtccttat 1740

catttcccgg aaaaattgat tccattggtt attctcaatg ctctggaagg taaagcatta 1800

cctatttatg gtaaagggga tcaaattcgc gactggttgt atgttgaaga tcatgcgcgt 1860

gcgttatata ccgtcgtaac cgaaggtaaa gcggatgaaa cttataacat tggtgggcac 1920

aacgaaaaga aaaacattga tgtagtgctc actatttgtg atttgttgga tgagattgtc 1980

ccgaaagaga aatcttatcg tgagcaaatc acttatgttg ccgatcgtcc gggacacgat 2040

cgccgttatg cgattgatgc tgagaagatt ggtcgcgaat tgggatggaa accacaggaa 2100

acgtttgaga gtgggattcg taaaacggtg gaatggtacc tgtccaatac aaaatgggtt 2160

gataatgtga aaagtggtgc ctatcaatcg tggattgaac agaactatga gggccgccag 2220

taatgaatat cctccttttt ggcaaaacag ggcaggtagg ttgggaacta cagcgtgctc 2280

tggcacctct gggtaatttg attgctcttg atgttcactc cactgattac tgtggtgatt 2340

ttagtaatcc tgaaggtgtc gctgaaaccg taagaagcat tcggcctgat attattgtca 2400

acgcagccgc tcacaccgca gtagacaaag cagaatcaga accagagttt gcacaattac 2460

ttaacgcgac gggtgtcgaa gcgatcgcga aagcagccaa tgaagtcggt gcttgggtta 2520

ttcactactc tactgactac gtatttccgg ggactggtga aataccatgg caggaggcgg 2580

atgcaaccgc accgctaaat gtttacggtg aaactaagtt agctggagaa aaagcattac 2640

aagagcattg tgcgaagcac cttattttcc ggaccagctg ggtctatgca ggtaaaggaa 2700

ataacttcgc caaaacaatg ttgcgtctgg caaaagagcg tgaagaatta gccgttatta 2760

atgatcagtt tggtgcgcca actggtgcag agttactggc tgattgtacg gcacatgcca 2820

ttcgtgtggc actgattaaa ccggaagtcg caggcttgta ccatctggta gctagtggta 2880

ccacaacgtg gcacgattat gctgcgctgg tttttgaaga ggcacgcaaa gcaggcattc 2940

cccttgcact caacaagctc aacgcagtac caacaacagc ctatcctaca ccagctcgtc 3000

gtccacataa ctctcgcctt aatacagaaa aatttcagca gaactttgcg cttgtcttgc 3060

ctgactggca ggttggtgtg aaacgaatgc ttaacgaatt atttacgaca acagcaattt 3120

aatagttttt gcatcttgtt cgtgatggtg gagcaagatg tattaaaagg aatgatgaaa 3180

tgaaaacgcg taaaggtatt attttggcgg gtggttctgg tactcgtctt tatcctgtga 3240

ctatggcagt cagtaaacag ctgttaccga tttatgataa accgatgatc tattatccgc 3300

tctctacact gatgttggcg ggtattcgcg atattttgat tattagtacg ccacaggata 3360

ctcctcgttt tcaacaactg ctgggtgacg gtagccagtg ggggctaaat cttcagtaca 3420

aagtgcaacc gagtccggat ggtcttgcgc aggcgtttat tatcggtgaa gagtttattg 3480

gtggtgatga ttgtgctttg gtacttggtg ataatatctt ctacggtcac gacctgccta 3540

agttaatgga tgccgctgtt aacaaagaaa gtggtgcaac ggtatttgcc tatcacgtta 3600

atgatcctga acgctacggt gtcgttgagt ttgataaaaa cggtacggca ataagcctgg 3660

aagaaaaacc gttacaacca aaaagtaatt atgcggtaac tgggctttat ttctatgata 3720

acgacgttgt cgaaatggcg aaaaacctta agccttctgc ccgtggtgaa ctagaaatta 3780

ccgatattaa ccgtatttat atggaacagg ggcgtttatc tgttgccatg atgggacgtg 3840

gttatgcatg gttggacacg gggacacatc aaagtcttat tgaggcaagc aatttcatcg 3900

cgacaataga agaacgacag gggctgaaag tttcctgccc ggaagaaatt gcttaccgta 3960

aagggtttat cgatgctgag caggtgaaag tattagctga accgttgaag aaaaatgctt 4020

atggccagta cctgctaaaa atgattaaag gttattaata aaatgaacgt aattaaaaca 4080

gagattccag acgtattaat tttcgaaccg aaagtttttg gtgatgagcg tggtttcttt 4140

atggaaagct ttaatcagaa agttttcgaa gaagctgtag gacgtaaggt tgaatttgtt 4200

caggataacc attcgaagtc tagtaaaggt gttttacgcg ggctgcatta tcagttagaa 4260

ccgtatgcgc aagggaaatt ggtacgttgc gctgttggtg aggtttttga tgtagctgtt 4320

gatattcgta aatcgtcgcc tacctttggt aaatgggttg gggtgaattt atctgctgag 4380

aataaacggc aattgtggat ccctgaggga tttgcacatg gttttttagt gctgagtgag 4440

actgcggaat ttttatataa aacgacgaat tattatcatc ctgagagtga tagagggatt 4500

atttggaatg atcccaatat aggtattgtt tggcctgaaa gagaaaatat agttttatcg 4560

aaaaaggata taaatcaacc taatttatca tatagcttct ctctcaaaca gttgttgtcg 4620

taagagaaaa gatctatgtc ccttctaagc aatgcaaaat gggtaagctt atctcaattt 4680

ggacgtatta ttatacaatt gattagcttg actgttttaa caagatttat accaccagca 4740

gattatggat taatggcttt aggcacagtt gttatgaatt ttgtcttcat aatacgtgat 4800

cttggaactg catcggccat aatacaaaga aaagaagtag atgacgatat tttaaattca 4860

gttttttggt tgaatgtaac tatgggagtg gggttatgca tactaattat actatgtact 4920

ccactaattg agctgttatt taagaatgag aagttagata atattctgta tttgttatgc 4980

ttttgctttc cattagctag tattggttct gctcatcagg cattaatgga aagaaactct 5040

cattttaaaa aaatagcaat catagaattg ctctcatctc tttctggttt tgttgttgca 5100

ttgctagtag cgatcaataa tggaggtgtt tatgcattag tataccaatt aatttgttca 5160

tcatttattt ctagtatatt attcttttat ctatcctctt ggacgccatc cttgcatttt 5220

aaatttgagg gggttaaaaa aattataggt tttagtagca ggttaactgt ttttaattta 5280

gttaactatt tctcacgtaa tgcagatgct atgataataa gtagaaagta tgatgctaat 5340

attctcggcg cttactctct agcttataga attatgttgt ttccgctcca gagtttaaca 5400

tttattgcgt caagatcact atatccaata ttaagtagaa accaagatga tttgaaactt 5460

attagggaga tatatttaaa aacaatattt ataatttcaa tgattaccat accattaatg 5520

ttaggattag tatttttaag gacgccgttc attacaatag ctttagggcc taactgggca 5580

ataacttcta atattttact ttggttggca ccaactggaa ttattcagtc aattcttagt 5640

tgctccggta gcatattaat gtcaactaat aacacgaaaa cattgatgtt attaggtata 5700

tttggggccg cgatacaagt attatcattc ttcattggtt ctttatttag tataaatatt 5760

tttgtttttg cttactttat agcaaatgta atcaatgcgc tagttgtttt atattttacg 5820

tttaaaagta taaagcttaa tatttattca ttctgtaaga tcctactgat cccaacctta 5880

tcttgttcgg tgatgataat agcgcttcat ttcgttaaaa aaatcattta cattaataat 5940

gtggtaaatg atgtgagcta tttaataatt caggtaatca tcggttgtat tgtatacttt 6000

attgtttttt atatcttcgt aaatatatgt cttcgattta aaatcatgtc agaaaatatg 6060

atcccagatt ttctgttgag aataaagttc tttagccata agagattttt aaattgaata 6120

aacaattatt tttgattgtt gtttataata agaaaatagc tgagagttgt acttttaata 6180

aggttgttaa ctctaagttt agtgatgatt cattatgtgt tatatggaac aatggaccca 6240

caagttgtga ggaggagttt ttgaatgtat atgagtataa taaaaacatt cgctatcatg 6300

aaacattgca taatatctca ttggccaaga tttataacga ggtaattaat aaatataacg 6360

ctcagattta tatcatccta gatgatgatt cttcattaac tgatgcatat tttgaagctg 6420

ttaaacaaat atcacctaat gaagtaggta tgcctgtcat atattatgat agaaaaataa 6480

ttaacccatg cataaatggt cagatttata gtaaaggaat taatattgat gctaatgata 6540

ccataacaac tatcgggagt ggattggttg tgggtaggga tgtagcatct caattattca 6600

aagcatataa ttctgtattt gatgaacgtt tttatctata tggagtagat actacgtttt 6660

gtttccgact taataaattg aaaataaatg ataaaattaa gattatagat ggctttgagc 6720

acggcctttc aaggcttgaa gggaaaaatg ataaattaac tctttttaga aaaatagaga 6780

gaagtaatga tctcgcatta cagatccgat attataaaga aaaaaaacat tggtttttaa 6840

tgatggtgct gttactcgcg agttcaatta agaagtttat tacttttcag ccacaacaat 6900

ataaatattc tactattatt aaaacatttg ttaagggaaa gcatgaacgt cagagataat 6960

gataacgcaa tcaagttatt ggagtttgtt ttaattttct ctttttttat tattgcatta 7020

tttttcttat attccccatc ttatcttatt tacattgtag ttagtgcgtt tgttttgatt 7080

aagttcaata ataactatag ttttggtttg tttatattat tgataatggt atggctgatt 7140

gtcaattcta ctaatgtcat ttcataccaa aattttgtgc tcgcgagtga tgatttctct 7200

tcttattata ataactatct tggatttctt cattacggga taaatgaaga aaatcttttt 7260

gaatttggct attcagaaat aatgttgcct ttgttgaact atattgcaag tttaattatt 7320

gggcaaccag aaccatataa gttaaagttt ctgtattctg tattgcaaag cactggtgta 7380

ttatattgct gcgtaaaaat atctcgtcac tataaacttg atttgagtaa tagtatatta 7440

ttaacagctg ccgtattggt gttttataag cctttagtag gtattcaact atctagacaa 7500

atgtttagct ctatttttat tatagctttt attttcacga ataataaatt tgagcgaatt 7560

atcttttcat taatggcctt ttgttttcat tcatcagcga taatattatt accaataacg 7620

caatatcttc tgacaaaaag gaaaagaaag gacttctatt atagtttaat tatcgttctg 7680

cttgcatatg ctgcatttat tgttgtgttt acatcgttta aaaatgaatt aataaatatt 7740

cctattttaa ataaattaga ctacactttt cgtatgttta atgaaccaga aaaaataaag 7800

caatctgtat ttacatcttt tctcttgtta atatatttaa tccctgcgct gattttttcc 7860

atcttaaata aaaaatctga tggatttaaa tataatttag ctatcatttg tgtattttta 7920

atatcttttt gtattgtacc tggtttcaat aacagattat tctttgctga gttatatgtc 7980

tttcttggtt ttttttatta tatggtgttt ttttacaata gagtgaatgc aagagagcat 8040

gtatcgagat taatcatctt tattcttttt actattctat tttttcaatc tcaattttca 8100

tcagaaaata ggcagtttga tagctttgaa ctagaacctt tctattatct taaatattta 8160

gaatatagag agacagaaat aaacagagga ctattagagt aacatgccta atttagttat 8220

ttatactgct gttactgggc attatgatga actggggaat gtttatgagg aaccttcagt 8280

tgattatatc tgctttacag actacaactt taccggtacg gtacctaaac cgtggaagca 8340

aattaaattg ccgccttcaa atttctctga taaagactta gcaagatatt gtaagcttaa 8400

tcctcatgtc ctattgcctc agtatcagca ttcgttgtgg attgatggca atattcgaat 8460

aaaaggtaaa atacgaaatt ttattattga cattttgagc aagcatcgaa ttgcagcata 8520

tgaacattgg tggcgagaca aaacagaaca ggaatttcat gaatgtgcta gaagtggttt 8580

cgatcctgct tggaaattat ataaacaaat tgagcgctat aagcatgaag gatacacctc 8640

ctcagatttt tttgagaata atatactcat gcgtaaccat atggaaagtg acataatcaa 8700

aatgcatgaa atatggtggg gggagtatat ttcaggaggt aagcgtgatc aatattcttt 8760

tacttatgct gcttataaaa gtgatgtaaa tatatattca ttaggggttc atgatgctag 8820

agttataaaa caatattttg actatgtgac acactccaag aaaaggccgt taaaacaata 8880

tatctggatt ataataaata gaatctatat ttctctaacg agatggagcg taaatgaacc 8940

atctcggaca aataaattag tgctaaataa tgaaagagat tcaaatgaaa aataaagttg 9000

ctggagtcat tgttacatat aatccagaaa ttaaaatact tctcagtgca ttggagtcat 9060

cgacaaaaca gttagactat atttatttga tagataattg ctcattaaat aaaaatgagg 9120

tggctgattt agctggaaga tttgggaatg taaaatttca ggcgctctct aaaaatattf 9180

gattagccag cgcccaaaac atgggcatca atactgctaa aaacaataac ctaatagaat 9240

atgtagtttt attcgatcag gatagcataa tagagaacaa ttttattgct tcattacttg 9300

atgattataa aaaagtttta gcaaaggatt ctaagatagg agctataggc ccggtttttt 9360

atgatccatc tactaaaatt aattatcctg caacagtata tataggtcct tttataaaaa 9420

aaatatctat aaaggatgag ccacaattcg caacgtattt aattgcctct ggctgtttaa 9480

taaaaataga tactttgtct tcggttggat taatgcagga tgatttgttc atcgattaca 9540

tcgatgttga atggagttta agagcaaaga gtaaaggtta taatttatat atatcaccaa 9600

acgcaaaaat ggcccataca attggagacg cgaggcgtaa atttttgggg cggacaatat 9660

ctattcactc cccttttaga cgttacttct tggttagaaa tagtttttac atgataaggt 9720

taaattatat tcctttaggg tacaagacta gagagtgtat ttttaatatt gccaggatat 9780

taacatctat catatattcc gatcaaaaaa ttaaaacaat aaaatcggct ttttatggag 9840

tcattgatgg aattgcaggt cgatttggcc ctctaaaacg taaaatataa agagaaattt 9900

catgaaaatt ttatatataa tcacaaaagc tgatgaaatc ggtggggcac aaattcatgt 9960

gagagacctt gctcgtcgtt tacacaatga tggtaataaa gttacagtaa tcgtaggaga 10020

ggatggcgct ttagttagac aacttaaaga gcttcacatt tcggtgcgaa tagtagaaaa 10080

tttagttagg caaatttcac cactaaatga tataaaagcc atttttaaca tcagaaagat 10140

aattaaagat aattcaccgg atattattgg tcttcactcc tctaaggctg gaattgttgg 10200

tcgactagca gcttgtcgat taaatattcc agtagtattt accgctcacg gttgggcatt 10260

tgcagagggt atcagtgaca aaaaaaggaa attatttatt ttcattgaga aaatactatc 10320

tccttttttg gataagataa ttactgtttc ggagcaagat aaaaagttgg cgctagattt 10380

aggcgttgca tcctctgaaa aacaagtcgt tattcataac ggaatgcctg atattactat 10440

taagcgtaag gattattcgg attcaactaa agttcgatta atcagtgtag ctcgtttttc 10500

agagcaaaaa gatcatgaaa ctttatttca cgcactcaag ttaatttcta cagataactg 10560

gacactaact ctggttggga aaggtcctaa gttagaaaat attaaaaaac ttgcatctga 10620

tttgaatatt gcaaataata ttctctttct tggggaaaga gatgatgtcg ataatttatt 10680

aagtgaaagt gatgttttct gtttaataac aaactgggag ggattgccat taagtattat 10740

cgaggctatg cgtgcgtcct tgccagtggt agctacagat gttggaggtg tctctgagtt 10800

agtagagcat aaaaaaaccg gcttgcttca ttctcctaaa aacatacaag aacttgctaa 10860

tatcctggat actattatca atgatagtga cttgagatat aaattgggaa atgctggaag 10920

agttaaatac caaaataatt tcacatttga acatatgtat tatgcaacaa tagatgaata 10980

taataaattg atacatacta aatagttaat tatatttttc ttgtgttcgc tcttttctaa 11040

cagttttaat ttctttaatt ttaagagata aatatattag acaagttatt ccaatatgag 11100

taaattggca taacttgtaa ctttagaccg caacccgcag taacccctga caggagtaaa 11160

taatgtcaaa gcaacagatc ggcgtcgtcg gtatggcagt gatggggcgc aaccttgcgc 11220

tcaatatcga aagccgtggt tataccgtct ctattttcaa ccgttcccgt gaaaagaccg 11280

aagaagtgat tgccgaaaat ccaggcaaga aactggttcc ttactatacg gtgaaagagt 11340

ttgttgaatc tctggaaacg cctcgtcgca tcctgttaat ggtgaaagca ggtgcaggca 11400

cggatgctgc tattgattcc ctcaagccat acctcgataa aggtgacatc atcattgatg 11460

gtggtaatac cttcttccag gacaccattc gtcgtaaccg tgagctttct gccgaaggct 11520

ttaacttcat tggtaccggt gtctccggtg gtgaagaagg cgcgctgaaa ggtccttcta 11580

ttatgcctgg tgggcagaaa gaagcctatg aactggttgc gccgatcctg accaaaatcg 11640

ccgcagtggc tgaagacggt gagccatgtg ttacctatat tggtgccgat ggcgcaggtc 11700

actatgtgaa gatggttcat aacggtattg aatacggcga tatgcagctg attgctgaag 11760

cctattctct acttaaaggt ggtctgaacc tcaccaacga agaactggcg cagaccttta 11820

ccgagtggaa taacggtgaa ctgagcagct acctgatcga cattaccaaa gacatcttca 11880

ccaaaaaaga tgaagacggt aactacctgg ttgatgtgat cctggatgaa gcggctaaca 11940

aaggtaccgg taaatggacc agccagagcg cgctggatct cggcgaaccg ctgtcgctga 12000

ttaccgagtc tgtgtttgca cgttatatct cgtctctgaa agatcagcgc gttgccgcgt 12060

ctaaagttct ctctggcccg caagcgcagc cagtaggcga caaagctgag tttatcgaga 12120

aagttcgtcg tgcgctgtat ctgggcaaaa tcgtttctta cgctcagggc ttctctcagc 12180

tgcgtgcggc gtctgaagag tacaactggg atctgaacta cggcgaaata gcgaagattt 12240

tccgtgctgg ctgcatcatt cgtgcgcagt tcctgcagaa aatcaccgat gcttatgccg 12300

aaaatccgca gatcgctaac ctgctgctgg ctccttactt caagcaaatt gccgatgact 12360

accagcaggc gctgcgcgat gtcgtcgctt atgcggtaca gaacggtatc ccggttccga 12420

ccttcgccgc tgcggttgcc tattatgaca gctaccgtgc cgctgttctg cctgcgaacc 12480

taatc 12485

Glycosyltransferase gene in the O antigen gene of table 1 intestinal bacteria O120 type bunch and oligosaccharide unit treatment gene and wherein Primer and PCR data

Gene	Function	The base position of gene	Forward primer	Reverse primer	The length of PCR product	Produce the group number of correct big or small electrophoresis band	The annealing temperature of PCR (℃)
								Wzx	O-antigen transhipment enzyme	4636-6117	4729-4744	5119-5134	406bp	0 *	56
			5575-5590	5939-5955	381bp	0 *	56
								Wzy	O-antigen polysaccharase	6943-8202	7123-7139	7582-7598	376bp	0 *	56
			7064-7079	7770-7787	724bp	0 *	56

^*Only in intestinal bacteria O120 type, obtain a correct band

Table 2 166 strain intestinal bacteria and 43 strain Shigellaes and their source

Group number	The bacterial strain that contains in this group	The source
			1, wild-type e. coli 2, wild-type e. coli 3, wild-type e. coli 4, wild-type e. coli 5, wild-type e. coli 6, wild-type e. coli 7, wild-type e. coli 8, wild-type e. coli 9, wild-type e. coli shigella dysenteriae 10, Shigella bogdii 11, shigella flexneri	O1，O2，O5，O7，O8，O9，O12，O13，O14，O15，O16，O17，O18， O19ab，O20，O21，O22，O23，O24 O4，O10，O25，O26，O27，O28，O29，O30，O32，O33，O34，O35， O36，O37，O38，O40，O41，O42，O43 O6，O44，O45，O46，O48，O49，O50，O51，O52，O54，O55，O56， O57，O58，O60，O61，O62，O53 O63，O65，O66，O69，O70，O71，O74，O75，O76，O77，O78， O79，O80，O81，O82，O83，O68 O84，O85，O86，O87，O88，O89，O90，O91，O92，O98，O99， O101，O102，O103，O104，O105，O106，O97 O107，O108，O109，O110，O111，O112ab，O112ac，O113， O115，O116，O118，O123，O125，O126，O128，O117 O129，O130，O131，O132，O133，O134，O135，O136，O137， O138，O139，O141，O142，O143，O144，O145，O140 O146，O147，O148，O150，O152，O154，O156，O157，O158， O159，O160，O161，O163，O164，O165，O166，O153 O168，O169，O170，O171，O172，O173， D1，D2，D3，D4，D5，D6，D7，D8，D9，D10，D11，D12，D13 B1，B2，B3，B4，B6，B7，B8，B9，B10，B11，B12，B13，B14，B15， B16，B17，B18 F1a，F1b，F2a，F2b，F3，F4a，F4b，F5(v：4)，F5(v：7)，F6， DS，DR	IMVS a IMVS a IMVS a IMVS a IMVS a IMVS a IMVS a IMVS a b c d d d

12, wild-type e. coli 13, the 6th group of bacterial strain add the intestinal bacteria reference culture

O3，O11，O39，O59，O64，O73，O96，O95，O100，O114，O15l，O155， O124，O167，O162，O121，O127，O149，O119 O120

IMVS a IMVS a

For the convenience that detects, every 12-19 bacterium is divided into one group, and 12 groups altogether, the 13rd group as positive control

a.Institute of Medical and Veterinary Science(IMVS)，Anelaide，Australia

b.Statens Serum Institut，Copenhagen，Denmark

C.O172 and O173 come from Statens Serum Institut, Copenhagen, and Denmark, all the other come from IMVS

D. China Preventive Medicial Science Institute's epidemiological study institute

Table 3 intestinal bacteria O120 type O antigen gene structure iron

Table 4 intestinal bacteria O120 type O antigen gene cluster gene position

ATTGTGGCTG CAGGGATCAA AGAAATCCTC CTGGTGACTC ATGCGTCCAA GAACCCGGTC 60

GAAAACCACT TCGACACCTC TTATGAATTA GAATCTCTCC TTGAACTGCG CGTGAAGCGT 120

CAACTGCTGG CGGAAGTACA GTCCATCTGT CCGCCGGGCG TGACCATTAT GAACGTGCGT 18O

CAGGGCGAAC CTTTAGGTTT AGGCCACTCT ATTTTGTGTG CACGACCCGC CATTGGTGAC 240

AATCCATTTG TCGTGGTACT GCCGGACGTT GTTATCGATG ATGCCAGCGC CGACCCGCTG 300

CGTTACAACC TTGCCGCTAT GATTGCGCGC TTCAACGAAA CGGGACGCAG CCAGGTGCTG 360

GCAAAACGTA TGCCGGGTGA CCTCTCCGAA TACTCCGTCA TCCAGACCAA AGAGCCGCTG 420

GACCGTGAGG GTAAAGTCAG CCGCATTGTT GAATTTATCG AAAAACCGGA TCAGCCGCAG 480

ACGCTGGACT CAGACATCAT GGCCGTAGGT CGCTATGTGC TTTCTGCCGA TATTTGGCCG 540

GAACTGGAAC GTACTCAGCC TGGTGCATGG GGACGTATTC AGCTGACTGA TGCTATTGCC 600

GAGCTGGCGA AAAAACAATC CGTTGATGCA ACGCTGATGA CCGGCGACAG TTACGACTGC 660

GGCAAAAAAA rGGGCTATAT GCAGGCGTTT GTGAAGTATG GCCTACGCAA CCTGAAAGAA 720

GGGACGAAGT TCCGTAAAGG TATTGAGAAG CTGTTAAGCG AATAATGAAA ATCTGACCGG 780

ATGTAACGGT TGATAAGAAA ATTATAACGG CAGTGAAGAT TTGCAGCAAA AGTAATTTGT 840

TGCGAATATT CCTGCCGrTG TTTTATATAA ACCATCAGAA TAACAACGAG TTAGCAGTAG 900

GGTTTTAGTC AAAGTTTTCC AGGATTTTCC TTGTTTCCAG AGCGGATTGG TAAGACAATT 960

AGCGTTTGAA TTTTTCGGGT TTGGCGCGAG TGGGTAAAGC TCGTCACATC GTAGACATGC 1020

ATGCAGTGCT CTGGTAGCTG TAAAGCCAGG GGCGGTAGCG TGCATTAATA CCTCTATTAA 1080

Orf1's is initial

TCAAACTGAG AGCCGCTTAT TTCACAGCAT GCTCTGAAGT AATATGGAAT AAATTAA GTG 1140

AAAATACTTG TTACTGGTGG CGCAGGATTT ATTGGTTCTG CTGTAGTTCG TCACATTATA 1200

AATAATACGC AGGATAGTGT TGTTAATGTC GATAAATTAA CGTACGCCGG AAACCTGGAA 1260

TCACTTGCTG ArGTTTCTGA TTCCGAACGC TATGTTTTTG AACATGCGGA TATTTGCGAT 1320

GCAGCTGTAA TGGCACGGAr TTTTGCTCAG CATCAGCCGG ATGCAGTGAT GCACCTGGCT 1380

GCTGAAAGCC ATGTTGACCG TTCAATTACA GGTCCTGCGG CATTTATTGA AACCAATATT 1440

GTTGGTACTT ArGTCCTTTT GGAAGCCGCT CGCAATTACT GGTCTGCTCT TGATGGCGAC 1500

AAGAAAAATA GCTTCCGTTT TCATCATATT TCTACTGACG AAGTCTATGG TGATTTGCCT 1560

CATCCTGACG AGGTAAATAA TACAGAAGAA TTACCCTTAT TTACTGAGAC AACAGCTTAC 1620

GCGCCAAGCA GCCCTTATTC CGCATCCAAA GCATCCAGCG ATCATTTAGT CCGCGCGTGG 1680

AAACGTACCT ATGGTTTACC GACCATTGTG ACTAATTGCT CTAACAATTA TGGTCCTTAT 1740

CATTTCCCGG AAAAATTGAT TCCATTGGTT ATTCTCAATG CTCTGGAAGG TAAAGCATTA 1800

CCTATTTATG GTAAAGGGGA TCAAATTCGC GACTGGTTGT ATGTTGAAGA TCATGCGCGT 1860

GCGTTATATA CCGTCGTAAC CGAAGGTAAA GCGGATGAAA CTTATAACAT TGGTGGGCAC 1920

AACGAAAAGA AAA CATTGA TGTAGTGCTC ACTATTTGTG ATTTGTTGGA TGAGATTGTC 1980

CCGAAAGAGA AATCTTATCG TGAGCAAATC ACTTATGTTG CCGATCGTCC GGGACACGAT 2040

CGCCGTTATG CGATTGATGC TGAGAAGATT GGTCGCGAAT TGGGATGGAA ACCACAGGAA 2100

ACGTTTGAGA GTGGGATTCG TAAA CGGTG GAATGGTACC TGTCCAATAC AAAATGGGTT 2160

GATAATGTGA AAAGTGGTGC CTATCAATCG TGGATTGAAC AGAACTATGA GGGCCGCCAG 2220

The termination orf2's of orf1 is initial

TAATGAATAT CCTCCTTTTT GGCAAAACAG GGCAGGTAGG TTGGGAACTA CAGCGTGCTC 2280

TGGCACCTCT GGGTAATTTG ATTGCTCTTG ATGTTCACTC CACTGATTAC TGTGCTGATT 2340

TTAGTAATCC TGAAGGTGTC GCTGAAACCG TAAGAAGCAT TCGGCCTGAT ATTATTGTCA 2400

ACGCAGCCGC TCACACCGCA GTAGACAAAG CAGAATCAGA ACCAGAGTTT GCACAATTAC 2460

TTAACGCGAC GGGTGTCGAA GCGATCGCGA AAGCAGCCAA TGAAGTCGGT GCTTGGGTTA 2520

TTCACTACTC TACTGACTAC GTATTTCCGG GGACTGGTGA AATACCATGG CAGGAGGCGG 2580

ATGCAACCGC ACCGCTAAAT GTTTACGGTG AAACTAAGTT AGCTGGAGAA AAAGCATTAC 2640

AAGAGCATTG TGCGAAGCAC CTTATTTTCC GGACCAGCTG GGTCTATGCA GGTAAAGGAA 2700

ATAACTTCGC CAAAACAATG TTGCGTCTGG CAAAAGAGCG TGAAGAATTA GCCGTTATTA 2760

ATGATCAGTT TGGTGCGCCA ACTGGTGCAG AGTTACTGGC TGATTGTACG GCACATGCCA 2820

TTCGTGTGGC ACTGATTAAA CCGGAAGTCG CAGGCTTGTA CCATCTGGTA GCTAGTGGTA 2880

CCACAACGTG GCACGATTAT GCTGCGCTGG TTTTTGAAGA GGCACGCAAA GCAGGCATTC 2940

CCCTTGCACT CAACAAGCTC AACGCAGTAC CAACAACAGC CTATCCTACA CCAGCTCGTC 3000

GTCCACATAA CTCTCGCCTT AATACAGAAA AATTTCAGCA GAACTTTGCG CTTGTCTTGC 3060

CTGACTGGCA GGTTGGTGTG AAACGAATGC TTAACGAATT ATTTACGACA ACAGCAATTT 3120

The termination of orf2

AATAGTTTTT GCATCTTGTT CGTGATGGTG GAGCAAGATG TATTAAAAGG AATGATGAAA 3180

Orf3's is initial

TGAAAACGCG TAAAGGTATT ATTTTGGCGG GTGGTTCTGG TACTCGTCTT TATCCTGTGA 3240

CTATGGCAGT CAGTAAACAG CTGTTACCGA TTTATGATAA ACCGATGATC TATTATCCGC 3300

TCTCTACACT GATGTTGGCG GGTATTCGCG ATATTTTGAT TATTAGTACG CCACAGGATA 3360

CTCCTCGTTT TCAACAACTG CTGGGTGACG GTAGCCAGTG GGGGCTAAAT CTTCAGTACA 3420

AAGTGCAACC GAGTCCGGAT GGTCTTGCGC AGGCGTTTAT TATCGGTGAA GAGTTTATTG 3480

GTGGTGATGA TTGTGCTTTG GTACTTGGTG ATAATATCTT CTACGGTCAC GACCTGCCTA 3540

AGTTAATGGA TGCCGCTGTT AACAAAGAAA GTGGTGCAAC GGTATTTGCC TATCACGTTA 3600

ATGATCCTGA ACGCTACGGT GTCGTTGAGT TTGATAAAAA CGGTACGGCA ATAAGCCTGG 3660

AAGAAAAACC GTTACAACCA AAAAGTAATT ATGCGGTAAC TGGGCTTTAT TTCTATGATA 3720

ACGACGTTGT CGAAATGGCG AAAAACCTTA AGCCTTCTGC CCGTGGTGAA CTAGAAATTA 3780

CCGATATTAA CCGTATTTAT ATGGAACAGG GGCGTTTATC TGTTGCCATG ATGGGACGTG 3840

GTTATGCATG GTTGGACACG GGGACACATC AAAGTCTTAT TGAGGCAAGC AATTTCATCG 3900

CGACAATAGA AGAACGACAG GGGCTGAAAG TTTCCTGCCC GGAAGAAATT GCTTACCGTA 3960

AAGGGTTTAT CGATGCTGAG CAGGTGAAAG TATTAGCTGA ACCGTTGAAG AAAAATGCTT 4020

The termination orf4's of orf3 is initial

ATGGCCAGTA CCTGCTAAAA ATGATTAAAG GTTAT TAATA AA ATGAACGTAATTAAAACA 4080

GAGATTCCAG ACGTATTAAT TTTCGAACCG AAAGTTTTTG GTGATGAGCG TGGTTTCTTT 4140

ATGGAAAGCT TTAATCAGAA AGTTTTCGAA GAAGCTGTAG GACGTAAGGT TGAATTTGTT 4200

CAGGATAACC ATTCGAAGTC TAGTAAAGGT GTTTTACGCG GGCTGCATTA TCAGTTAGAA 4260

CCGTATGCGC AAGGGAAATT GGTACGTTGC GCTGTTGGTG AGGTTTTTGA TGTAGCTGTT 4320

GATATTCGTA AATCGTCGCC TACCTTTGGT AAATGGGTTG GGGTGAATTT ATCTGCTGAG 4380

AATAAACGGC AATTGTGGAT CCCTGAGGGA TTTGCACATG GTTTTTTAGT GCTGAGTGAG 4440

ACTGCGGAAT TTTTATATAA AACGACGAAT TATTATCATC CTGAGAGTGA TAGAGGGATT 4500

ATTTGGAATG ATCCCAATAT AGGTATTGTT TGGCCTGAAA GAGAAAATAT AGTTTTATCG 4560

AAAAAGGATA TAAATCAACC TAATTTATCA TATAGCTTCT CTCTCAAACA GTTGTTGTCG 4620

The termination orf5's of orf4 is initial

TAAGAGAAAAGATCT ATGTC CCTTCTAAGC AATGCAAAATGGGTAAGCTTATCTCAATTT 4680

GGACGTATTA TTATACAATT GATTAGCTTG ACTGTTTTAA CAAGATTTAT ACCACCAGCA 4740

GATTATGGAT TAATGGCTTT AGGCACAGTT GTTATGAATT TTGTCTTCAT AATACGTGAT 4800

CTTGGAACTG CATCGGCCAT AATACAAAGA AAAGAAGTAG ATGACGATAT TTTAAATTCA 4860

GTTTTTTGGT TGAATGTAAC TATGGGAGTG GGGTTATGCA TACTAATTAT ACTATGTACT 4920

CCACTAATTG AGCTGTTATT TAAGAATGAG AAGTTAGATA ATATTCTGTA TTTGTTATGC 4980

TTTTGCTTTC CATTAGCTAG TATTGGTTCT GCTCATCAGG CATTAATGGA AAGAAACTCT 5040

CATTTTAAAA AAATAGCAAT CATAGAATTG CTCTCATCTC TTTCTGGTTT TGTTGTTGCA 5100

TTGCTAGTAG CGATCAATAA TGGAGGTGTT TATGCATTAG TATACCAATT AATTTGTTCA 5160

TCATTTATTT CTAGTATATT ATTCTTTTAT CTATCCTCTT GGACGCCATC CTTGCATTTT 5220

AAATTTGAGG GGGTTAAAAA AATTATAGGT TTTAGTAGCA GGTTAACTGT TTTTAATTTA 5280

GTTAACTATT TCTCACGTAA TGCAGATGCT ATGATAATAA GTAGAAAGTA TGATGCTAAT 5340

ATTCTCGGCG CTTACTCTCT AGCTTATAGA ATTATGTTGT TTCCGCTCCA GAGTTTAACA 5400

TTTATTGCGT CAAGATCACT ATATCCAATA TTAAGTAGAA ACCAAGATGA TTTGAAACTT 5460

ATTAGGGAGA TATATTTAAA AACAATATTT ATAATTTCAA TGATTACCAT ACCATTAATG 5520

TTAGGATTAG TATTTTTAAG GACGCCGTTC ATTACAATAG CTTTAGGGCC TAACTGGGCA 5580

ATAACTTCTA ATATTTTACT TTGGTTGGCA CCAACTGGAA TTATTCAGTC AATTCTTAGT 5640

TGCTCCGGTA GCATATTAAT GTCAACTAAT AACACGAAAA CATTGATGTT ATTAGGTATA 5700

TTTGGGGCCG CGATACAAGT ATTATCATTC TTCATTGGTT CTTTATTTAG TATAAATATT 5760

TTTGTTTTTG CTTACTTTAT AGCAAATGTA ATCAATGCGC TAGTTGTTTT ATATTTTACG 5820

TTTAAAAGTA TAAAGCTTAA TATTTATTCA TTCTGTAAGA TCCTACTGAT CCCAACCTTA 5880

TCTTGTTCGG TGATGATAAT AGCGCTTCAT TTCGTTAAAA AAATCATTTA CATTAATAAT 5940

GTGGTAAATG ATGTGAGCTA TTTAATAATT CAGGTAATCA TCGGTTGTAT TGTATACTTT 6000

ATTGTTTTTT ATATCTTCGT AAATATATGT CTTCGATTTA AAATCATGTC AGAAAATATG 6060

The termination of the initial orf5 of orf6

ATCCCAGATT TTCTGTTGAG AATAAAGTTC TTTAGCCATAAGAGATTTTTAAA TTGAATA 6120

AACAATTATT TTTGATTGTT GTTTATAATA AGAAAATAGC TGAGAGTTGT ACTTTTAATA 6180

AGGTTGTTAA CTCTAAGTTT AGTGATGATT CATTATGTGT TATATGGAAC AATGGACCCA 6240

CAAGTTGTGA GGAGGAGTTT TTGAATGTAT ATGAGTATAA TAAAAACATT CGCTATCATG 6300

AAACATTGCA TAATATCTCA TTGGCCAAGA TTTATAACGA GGTAATTAAT AAATATAACG 6360

CTCAGATTTA TATCATCCTA GATGATGATT CTTCATTAAC TGATGCATAT TTTGAAGCTG 6420

TTAAACAAAT ATCACCTAAT GAAGTAGGTA TGCCTGTCAT ATATTATGAT AGAAAAATAA 648

TTAACCCATG CATAAATGGT CAGATTTATA GTAAAGGAAT TAATATTGAT GCTAATGATA 6540

CCATAACAAC TATCGGGAGT GGATTGGTTG TGGGTAGGGA TGTAGCATCT CAATTATTCA 6600

AAGCATATAA TTCTGTATTT GATGAACGTT TTTATCTATA TGGAGTAGAT ACTACGTTTT 6660

GTTTCCGACT TAATAAATTG AAAATAAATG ATAAAATTAA GATTATAGAT GGCTTTGAGC 6720

ACGGCCTTTC AAGGCTTGAA GGGAAAAATG ATAAATTAAC TCTTTTTAGA AAAATAGAGA 6780

GAAGTAATGA TCTCGCATTA CAGATCCGAT ATTATAAAGA AAAAAAACAT TGGTTTTTAA 684

TGATGGTGCT GTTACTCGCG AGTTCAATTA AGAAGTTTAT TACTTTTCAG CCACAACAAT 6900

The termination of the initial orf6 of orf7

ATAAATATTC TACTATTATT AAAACATTTGTTAAGGGAAAGC ATGAACGTCAGAGA TAAT 6960

GATAACGCAA TCAAGTTATT GGAGTTTGTT TTAATTTTCT CTTTTTTTAT TATTGCATTA 7020

TTTTTCTTAT ATTCCCCATC TTATCTTATT TACATTGTAG TTAGTGCGTT TGTTTTGATT 7080

AAGTTCAATA ATAACTATAG TTTTGGTTTG TTTATATTAT TGATAATGGT ATGGCTGATT 7140

GTCAATTCTA CTAATGTCAT TTCATACCAA AATTTTGTGC TCGCGAGTGA TGATTTCTCT 7200

TCTTATTATA ATAACTATCT TGGATTTCTT CATTACGGGA TAAATGAAGA AAATCTTTTT 7260

GAATTTGGCT ATTCAGAAAT AATGTTGCCT TTGTTGAACT ATATTGCAAG TTTAATTATT 7320

GGGCAACCAG AACCATATAA GTTAAAGTTT CTGTATTCTG TATTGCAAAG CACTGGTGTA 7380

TTATATTGCT GCGTAAAAAT ATCTCGTCAC TATAAACTTG ATTTGAGTAA TAGTATATTA 7440

TTAACAGCTG CCGTATTGGT GTTTTATAAG CCTTTAGTAG GTATTCAACT ATCTAGACAA 7500

ATGTTTAGCT CTATTTTTAT TATAGCTTTT ATTTTCACGA ATAATAAATT TGAGCGAATT 7560

ATCTTTTCAT TAATGGCCTT TTGTTTTCAT TCATCAGCGA TAATATTATT ACCAATAACG 7620

CAATATCTTC TGACAAAAAG GAAAAGAAAG GACTTCTATT ATAGTTTAAT TATCGTTCTG 7680

CTTGCATATG CTGCATTTAT TGTTGTGTTT ACATCGTTTA AAAATGAATT AATAAATATT 7740

CCTATTTTAA ATAAATTAGA CTACACTTTT CGTATGTTTA ATGAACCAGA AAAAATAAAG 7800

CAATCTGTAT TTACATCTTT TCTCTTGTTA ATATATTTAA TCCCTGCGCT GATTTTTTCC 7860

ATCTTAAATA AAAAATCTGA TGGATTTAAA TATAATTTAG CTATCATTTG TGTATTTTTA 7920

ATATCTTTTT GTATTGTACC TGGTTTCAAT AACAGATTAT TCTTTGCTGA GTTATATGTC 7980

TTTCTTGGTT TTTTTTATTA TATGGTGTTT TTTTACAATA GAGTGAATGC AAGAGAGCAT 8040

GTATCGAGAT TAATCATCTT TATTCTTTTT ACTATTCTAT TTTTTCAATC TCAATTTTCA 8100

TCAGAAAATA GGCAGTTTGA TAGCTTTGAA CTAGAACCTT TCTATTATCT TAAATATTTA 8160

The termination orf8's of orf7 is initial

GAATATAGAG AGACAGAAAT AAACAGAGGACTATTAGAG T AACATGCCTAATTTAGTTAT 8220

TTATACTGCT GTTACTGGGC ATTATGATGA ACTGGGGAAT GTTTATGAGG AACCTTCAGT 8280

TGATTATATC TGCTTTACAG ACTACAACTT TACCGGTACG GTACCTAAAC CGTGGAAGCA 8340

AATTAAATTG CCGCCTTCAA ATTTCTCTGA TAAAGACTTA GCAAGATATT GTAAGCTTAA 8400

TCCTCATGTC CTATTGCCTC AGTATCAGCA TTCGTTGTGG ATTGATGGCA ATATTCGAAT 8460

AAAAGGTAAA ATACGAAATT TTATTATTGA CATTTTGAGC AAGCATCGAA TTGCAGCATA 8520

TGAACATTGG TGGCGAGACA AAACAGAACA GGAATTTCAT GAATGTGCTA GAAGTGGTTT 8580

CGATCCTGCT TGGAAATTAT ATAAACAAAT TGAGCGCTAT AAGCATGAAG GATACACCTC 8640

CTCAGATTTT TTTGAGAATA ATATACTCAT GCGTAACCAT ATGGAAAGTG ACATAATCAA 8700

AATGCATGAA ATATGGTGGG GGGAGTATAT TTCAGGAGGT AAGCGTGATC AATATTCTTT 8760

TACTTATGCT GCTTATAAAA GTGATGTAAA TATATATTCA TTAGGGGTTC ATGATGCTAG 8820

AGTTATAAAA CAATATTTTG ACTATGTGAC ACACTCCAAG AAAAGGCCGT TAAAACAATA 8880

TATCTGGATT ATAATAAATA GAATCTATAT TTCTCTAACG AGATGGAGCG TAAATGAACC 8940

The termination of the initial orf8 of orf9

ATCTCGGACA AATAAATTAGTGCTAAATA A TGAAAGAGATTCAAATGAAAAA TAAAGTTG 9000

CTGGAGTCAT TGTTACATAT AATCCAGAAA TTAAAATACT TCTCAGTGCA TTGGAGTCAT 9060

CGACAAAACA GTTAGACTAT ATTTATTTGA TAGATAATTG CTCATTAAAT AAAAATGAGG 9120

TGGCTGATTT AGCTGGAAGA TTTGGGAATG TAAAATTTCA GGCGCTCTCT AAAAATATTG 9180

GATTAGCCAG CGCCCAAA C ATGGGCATCA ATACTGCTAA AAACAATAAC CTAATAGAAT 9240

ATGTAGTTTT ATTCGATCAG GATAGCATAA TAGAGAACAA TTTTATTGCT TCATTACTTG 9300

ATGATTATAA AAAAGTTTTA GCAAAGGATT CTAAGATAGG AGCTATAGGC CCGGTTTTTT 9360

ATGATCCATC TACTAAAATT AATTATCCTG CAACAGTATA TATAGGTCCT TTTATAAAAA 9420

AAATATCTAT AAAGGATGAG CCACAATTCG CAACGTATTT AATTGCCTCT GGCTGTTTAA 9480

TAAAAATAGA TACTTTGTCT TCGGTTGGAT TAATGCAGGA TGATTTGTTC ATCGATTACA 9540

TCGATGTTGA ATGGAGTTTA AGAGCAAAGA GTAAAGGTTA TAATTTATAT ATATCACCAA 9600

ACGCAAAAAT GGCCCATACA ATTGGAGACG CGAGGCGTAA ATTTTTGGGG CGGACAATAT 9660

CTATTCACTC CCCTTTTAGA CGTTACTTCT TGGTTAGAAA TAGTTTTTAC ATGATAAGGT 9720

TAAATTATAT TCCTTTAGGG TACAAGACTA GAGAGTGTAT TTTTAATATT GCCAGGATAT 9780

TAACATCTAT CATATATTCC GATCAAAAAA TTAAAACAAT AAAATCGGCT TTTTATGGAG 9840

The termination of orf9

TCATTGATGG AATTGCAGGT CGATTTGGCC CTCTAAAACG TAAAATA TAA AGAGAAATTT 9900

Orf10's is initial

C ATGAAAATT TTATATATAA TCACAAAAGC TGATGAAATC GGTGGGGCAC AAATTCATGT 9960

GAGAGACCTT GCTCGTCGTT TACACAATGA TGGTAATAAA GTTACAGTAA TCGTAGGAGA 10020

GGATGGCGCT TTAGTTAGAC AACTTAAAGA GCTTCACATT TCGGTGCGAA TAGTAGAAAA 10080

TTTAGTTAGG CAAATTTCAC CACTAAATGA TATAAAAGCC ATTTTTAACA TCAGAAAGAT 10140

AATTAAAGAT AATTCACCGG ATATTATTGG TCTTCACTCC TCTAAGGCTG GAATTGTTGG 10200

TCGACTAGCA GCTTGTCGAT TAAATATTCC AGTAGTATTT ACCGCTCACG GTTGGGCATT 10260

TGCAGAGGGT ATCAGTGACA AAAAAAGGAA ATTATTTATT TTCATTGAGA AAATACTATC 10320

TCCTTTTTTG GATAAGATAA TTACTGTTTC GGAGCAAGAT AAAAAGTTGG CGCTAGATTT 10380

AGGCGTTGCA TCCTCTGAAA AACAAGTCGT TATTCATAAC GGAATGCCTG ATATTACTAT 10440

TAAGCGTAAG GATTATTCGG ATTCAACTAA AGTTCGATTA ATCAGTGTAG CTCGTTTTTC 10500

AGAGCAAAAA GATCATGAAA CTTTATTTCA CGCACTCAAG TTAATTTCTA CAGATAACTG 1C560

GACACTAACT CTGGTTGGGA AAGGTCCTAA GTTAGAAAAT ATTAAAAAAC TTGCATCTGA 10620

TTTGAATATT GCAAATAATA TTCTCTTTCT TGGGGAAAGA GATGATGTCG ATAATTTATT 10680

AAGTGAAAGT GATGTTTTCT GTTTAATAAC AAACTGGGAG GGATTGCCAT TAAGTATTAT 10740

CGAGGCTATG CGTGCGTCCT TGCCAGTGGT AGCTACAGAT GTTGGAGGTG TCTCTGAGTT 10800

AGTAGAGCAT AAAAAAACCG GCTTGCTTCA TTCTCCTAAA AACATACAAG AACTTGCTAA 10860

TATCCTGGAT ACTATTATCA ATGATAGTGA CTTGAGATAT AAATTGGGAA ATGCTGGAAG 10920

AGTTAAATAC CAAAATAATT TCACATTTGA ACATATGTAT TATGCAACAA TAGATGAATA 10980

The termination of orf10

TAATAAATTG ATACATACTAAA TAGTTAAT TATATTTTTC TTGTGTTCGC TCTTTTCTAA 11040

CAGTTTTAAT TTCTTTAATT TTAAGAGATA AATATATTAG ACAAGTTATT CCAATATGAG 11000

TAAATTGGCA TAACTTGTAA CTTTAGACCG CAACCCGCAG TAACCCCTGA CAGGAGTAAA 11600

TAATGTCAAA GCAACAGATC GGCGTCGTCG GTATGGCAGT GATGGGGCGC AACCTTGCGC 11220

TCAATATCGA AAGCCGTGGT TATACCGTCT CTATTTTCAA CCGTTCCCGT GAAAAGACCG 11280

AAGAAGTGAT TGCCGAAAAT CCAGGCAAGA AACTGGTTCC TTACTATACG GTGAAAGAGT 11340

TTGTTGAATC TCTGGAAACG CCTCGTCGCA TCCTGTTAAT GGTGAAAGCA GGTGCAGGCA 11400

CGGATGCTGC TATTGATTCC CTCAAGCCAT ACCTCGATAA AGGTGACATC ATCATTGATG 11460

GTGGTAATAC CTTCTTCCAG GACACCATTC GTCGTAACCG TGAGCTTTCT GCCGAAGGCT 11520

TTAACTTCAT TGGTACCGGT GTCTCCGGTG GTGAAGAAGG CGCGCTGAAA GGTCCTTCTA 11580

TTATGCCTGG TGGGCAGAAA GAAGCCTATG AACTGGTTGC GCCGATCCTG ACCAAAATCG 11640

CCGCAGTGGC TGAAGACGGT GAGCCATGTG TTACCTATAT TGGTGCCGAT GGCGCAGGTC 11700

ACTATGTGAA GATGGTTCAT AACGGTATTG AATACGGCGA TATGCAGCTG ATTGCTGAAG 11760

CCTATTCTCT ACTTAAAGGT GGTCTGAACC TCACCAACGA AGAACTGGCG CAGACCTTTA 11820

CCGAGTGGAA TAACGGTGAA CTGAGCAGCT ACCTGATCGA CATTACCAAA GACATCTTCA 11880

CCAAAAAAGA TGAAGACGGT AACTACCTGG TTGATGTGAT CCTGGATGAA GCGGCTAACA 11940

AAGGTACCGG TAAATGGACC AGCCAGAGCG CGCTGGATCT CGGCGAACCG CTGTCGCTGA 12000

TTACCGAGTC TGTGTTTGCA CGTTATATCT CGTCTCTGAA AGATCAGCGC GTTGCCGCGT 12060

CTAAAGTTCT CTCTGGCCCG CAAGCGCAGC CAGTAGGCGA CAAAGCTGAG TTTATCGAGA 12120

AAGTTCGTCG TGCGCTGTAT CTGGGCAAAA TCGTTTCTTA CGCTCAGGGC TTCTCTCAGC 12180

TGCGTGCGGC GTCTGAAGAG TACAACTGGG ATCTGAACTA CGGCGAAATA GCGAAGATTT 12240

TCCGTGCTGG CTGCATCATT CGTGCGCAGT TCCTGCAGAA AATCACCGAT GCTTATGCCG 12300

AAAATCCGCA GATCGCTAAC CTGCTGCTGG CTCCTTACTT CAAGCAAATT GCCGATGACT 12360

ACCAGCAGGC GCTGCGCGAT GTCGTCGCTT ATGCGGTACA GAACGGTATC CCGGTTCCGA 12420

CCTTCGCCGC TGCGGTTGCC TATTATGACA GCTACCGTGC CGCTGTTCTG CCTGCGAACC 12480

TAATC 12485

The above, it only is preferred embodiment of the present invention, be not that the present invention is done any type of restriction, every foundation technical spirit of the present invention all still belongs in the scope of technical solution of the present invention any simple modification, equivalent variations and modification that above embodiment did.

Claims (4)

1, a kind of oligonucleotide of the O-antigen-specific to intestinal bacteria O120 type, it is characterized in that: its wzx sequence is that the Nucleotide or the wzy sequence of 4636 to 6117 bases among the SEQ ID NO:1 is the Nucleotide of 6943 to 8202 bases among the SEQ IDNO:1 or has above-mentioned sequence insertion, lack or replace one or more Nucleotide, but keeps the oligonucleotide of the O-antigen function of wzx, wzy Nucleotide specific detection intestinal bacteria O120 type.

2, a kind of oligonucleotide of the O-antigen-specific to intestinal bacteria O120 type, it is characterized in that, it is that to come from the oligonucleotide of wzx gene right: the Nucleotide of 4729 to 4744 bases among the SEQ ID NO:1 and the Nucleotide of 5119 to 5134 bases, the Nucleotide of 5575 to 5590 bases among the SEQ ID NO:1 and the Nucleotide of 5939 to 5955 bases; Or the oligonucleotide that comes from the wzy gene is right: the Nucleotide of 7123 to 7139 bases among the SEQ ID NO:1 and the Nucleotide of 7582 to 7598 bases, the Nucleotide of 7064 to 7079 bases among the SEQ ID NO:1 and the Nucleotide of 7770 to 7787 bases.

3, the application of oligonucleotide in detecting the O-antigen of expressing the antigenic bacterium of O-, identifying bacterium of claim 1, any described O-antigen-specific to intestinal bacteria O120 type of 2.

4, according to the application of the oligonucleotide of claim 1, any described O-antigen-specific to intestinal bacteria O120 type of 2, it is characterized in that, it is used for PCR, is used for hybridization and fluoroscopic examination or is used to make gene chip or microarray as probe as primer, and the confession detection bodies reaches the bacterium in the environment outward.