CN1224709C - Beta-agaropectionase gene aga B, its preparation method and application - Google Patents

Beta-agaropectionase gene aga B, its preparation method and application Download PDF

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Publication number
CN1224709C
CN1224709C CNB031125182A CN03112518A CN1224709C CN 1224709 C CN1224709 C CN 1224709C CN B031125182 A CNB031125182 A CN B031125182A CN 03112518 A CN03112518 A CN 03112518A CN 1224709 C CN1224709 C CN 1224709C
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agarase
agab
beta
gene
agar
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CN1460717A (en
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于文功
马翠萍
路新枝
韩峰
褚艳
石超
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Qingdao Ocean University Of China Holdings Ltd
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Ocean University of China
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Abstract

The present invention relates to a beta-agarase gene agaB which is characterized in that the gene is used for coding the beta-agarase of pseudoalteromonas sp. CY24. The beta-agarase coded by the beta-agarase gene of the present invention can specifically degrade agar to produce new agar oligose whose polymerization degree is from 8 to 14, and the content of each main new agar oligose is greater than 20% in degradation products; thus, an effective method is provided for the large-scale preparation of novel agar oligose whose polymerization degree is eight, ten, twelve and fourteen, and the defect of low polymerization degree (from diose to hexaose in general) of final degradation products of beta-agarase in the prior art is overcome. The recombinant beta-agarase expressed by a colibacillus recombinant strain BL21-pET24-agaB accounts for 25% of total protein and has high expression level and easy purification, and thus, the present invention can realize the mass production of the recombinant beta-agarase and is low in cost.

Description

A kind of β-agarase gene agaB and its production and application
Technical field
The present invention relates to a kind of β-agarase gene agaB, the preparation and the application of particularly a kind of β-agarase gene agaB that derives from false other Zymomonas mobilis (Pseudoalteromonas sp.) CY24 and clone thereof, expression, expression product.
Background technology
Agarase is mainly derived from marine microorganism, at present from marine pseudomonas, vibrios separation and purification go out multiple agarase.According to the mode of action difference of agarase, can be divided into two classes to it: α-agarase and β-agarase.α-1,3 glycosidic link of α-agarase cracking agarose, generating with β-D-semi-lactosi is non reducing end and with 3,6-inner ether-α-L-semi-lactosi is the fine jade oligosaccharides series of reducing end under neutral; β-1,4 glycosidic link of β-agarase cracking agarose, generating with β-D-semi-lactosi is reducing end under neutral and with 3,6-inner ether-α-L-semi-lactosi is the new fine jade oligosaccharides series of non reducing end.Agarase is with a wide range of applications, and it is used to the preparation of algae protoplastis and the fundamental research of algae physiological and biochemical property the earliest.In addition, it also is used for the separation of high-molecular-weight DNA and is used for the preparation of agaropectin oligose as toolenzyme.Particularly, it is found that the agaropectin oligose of different polymerization degree has important pharmaceutical use, as antitumor, anti-ageing, anti-infective etc. in recent years along with the develop rapidly of glycobiology and chemical research.But, the preparation of oligosaccharides is still a global technical barrier, the method reaction conditions of traditional acid degradation agar-agar is more violent, specificity is poor, hydrolysate is destroyed easily, is unfavorable for the analysis and the recovery of product, and the enzyme digestion reaction condition is easy to control, help a large amount of preparations of specific oligosaccharides, so enzymolysis process replacing acid solution has become trend.The β of Fa Xianing-agarase degraded product is new fine jade disaccharides, new fine jade tetrose and Xin Qiong six sugar mostly up to now, and therefore present market has only the standard substance of two, four, six sugar, does not satisfy the needs of production and scientific research far away.
Summary of the invention
The purpose of this invention is to provide β-agarase gene agaB of the other Zymomonas mobilis CY24 of a kind of vacation and its production and application, it can remedy the above-mentioned deficiency of prior art.
A kind of β-agarase gene agaB is characterized in that it is the gene agaB of β-agarase of the false other Zymomonas mobilis CY24 of coding.
The preparation method of a kind of β-agarase gene agaB is characterized in that the gene agaB with β-agarase of the false other Zymomonas mobilis CY24 of shotgun cloning.
β of the present invention-agarase gene agaB is used to prepare escherichia coli cloning carrier pBS-agaB.
β of the present invention-agarase gene agaB is used to prepare intestinal bacteria recombinant strain DH5 α-pBS-agaB.
β of the present invention-agarase gene agaB is used to prepare coli expression carrier pET24-agaB.
β of the present invention-agarase gene agaB is used to prepare intestinal bacteria recombinant strain BL21 (DE3)-pET24-agaB.
β of the present invention-agarase gene agaB is used to prepare recombinant beta-agarase.
β of the present invention-agarase gene agaB agar-agar that is used to degrade is prepared agaropectin oligose.
β-the agarase of β of the present invention-agarase gene agaB coding can be degraded specifically, and to produce the polymerization degree be the new fine jade oligosaccharides of 8-14 to agar-agar, every kind of main new fine jade oligosaccharides content in degraded product is greater than 20%, therefore for the polymerization degree is that a large amount of preparations of eight, ten, 12 and 14 new fine jade oligosaccharides provide a kind of strong instrument, and remedied the shortcoming of β-agarase degraded end product polymerization degree low (being generally 2-6 sugar) in the past.Expressed recombinant beta-the agarase of intestinal bacteria recombinant strain BL21-pET24-agaB of the present invention accounts for 25% of total protein, and the expression level height is easy to purifying, thus can mass production recombinant beta-agarase by the present invention, and cost is lower.
Description of drawings and embodiment
Accompanying drawing 1 is the nucleotide sequence of β-agarase agaB gene.
Accompanying drawing 2 is the aminoacid sequence of inferring according to the nucleotide sequence of β-agarase agaB gene.
Following examples will help those of ordinary skill in the art further to understand the present invention, but not limit the present invention in any form.
Embodiment 1: the preparation of β-agarase gene agaB
Adopt β-agarase gene agaB of the false other Zymomonas mobilis CY24 of shotgun cloning, concrete operations are to utilize agar-agar to select degraded active clone of agar-agar and order-checking for the flat screen of sole carbon source from the false other Zymomonas mobilis genomic library that this laboratory has made up.Utilize biological software Primer5.0 to analyze single open reading frame and proper restriction site, single open reading frame is carried out enzyme respectively cut subclone further with the activated purpose clone of agar-agar plate screening.According to sequencing result design upstream primer (5 '-CATATGTTAAAGCGCCACCAAGC-3 ') and downstream primer (5 '-CTCGAGTTGGCAAGTATAACCT-3 '), with the genomic dna is template, carry out the PCR reaction, PCR reacts (10 μ l reaction system) composed as follows: the upstream and downstream primer of 0.8 μ l dNTP, 1 μ l, 10 * PCR damping fluid, 0.05 μ l (5U/ μ l) Taq enzyme, 1 μ l dna profiling, each 0.1 μ l.Reaction conditions is: 94 ℃ of pre-sex change 2min, 94 ℃ of 30s, 56.7 ℃ of 30s, 72 ℃ of 90s then, totally 30 circulations, 72 ℃ were continued to extend 15min when reaction finished, then the PCR product is reclaimed and obtain β-agarase gene agaB, its concrete nucleotide sequence is seen accompanying drawing 1.
Embodiment 2: the structure of escherichia coli cloning carrier pBS-agaB
β-agarase agaB gene is connected with carrier pBS-T's, 20 μ l reaction system: pBS-T, 0.5 μ l, the PCR product 10 μ l that embodiment 1 obtains, T 4Dna ligase 1.0 μ l, 10 * T 4Dna ligase damping fluid 2.0 μ l, ddH 216 ℃ of connections of O 6.5 μ l resultant connection liquid that spends the night can obtain escherichia coli cloning carrier pBS-agaB, is used for transformed into escherichia coli DH5 α.
Embodiment 3: the structure of intestinal bacteria recombinant strain DH5 α-pBS-agaB
Add competence E.coli DH5 α that 100 μ l thaw and be connected liquid to the 1.5mlEppendorf pipe with 10 μ l embodiment 2 obtain, ice bath 30min, 42 ℃ of 90s, ice bath 3min adds LB substratum 900 μ l, 37 ℃ of shaking culture 1 hour.Bacterium liquid with coat on the LB flat board that contains 50 μ g/ml penbritins 37 ℃ of overnight incubation after 4 μ l IPTG and 40 μ l X-gal mix.The single bacterium colony of picking white is PCR and is detected, and presents the positive conversion bacterium colony of the special band person of 1.4kb in the agarose gel electrophoresis, promptly contains bacillus coli DH 5 alpha-pBS-agaB of pBS-agaB.Utilize alkaline lysis from DH5 α-pBS-agaB, to extract plasmid, measure the nucleotide sequence of external source insertion sequence agaB with the order-checking universal primer of pBluescript II KS (+).
Embodiment 4: the structure of coli expression carrier pET24-agaB
Cloning vector pBS-agaB and expression vector PET-24a cut with NdeI and XhoI enzyme respectively, and the enzyme tangent condition is as follows:
Reaction system 1:ddH 2O 67 μ l, 10 * H Buffer, 10 μ l, pBS-agaB plasmid DNA 20 μ l, NdeI 1.5 μ l, XhoI 1.5 μ l
Reaction system 2:ddH 2O 66 μ l, 10 * H Buffer, 10 μ l, PET-24a plasmid DNA 20 μ l, NdeI 2 μ l, XhoI 2 μ l
37 ℃ of following enzymes were cut 3 hours, reclaimed two purpose fragment 1.4kb and 5.3kb behind the electrophoresis respectively, and the two is identical with expression vector pET-24a (+) clip size with β-agarase agaB full length gene fragment respectively, uses T 4Dna ligase connects, and condition of contact is as follows: ddH 2O 11 μ l, 10 * T 4Dna ligase damping fluid 2.0 μ l, 5.3kb fragment 4 μ l, 1.4kb fragment 2 μ l, T 4Dna ligase 1.0 μ l, 16 ℃ of connections are spent the night and can be obtained coli expression carrier pET24-agaB, are used for transformed into escherichia coli BL21 (DE3).
Embodiment 5: the structure of intestinal bacteria recombinant strain BL21 (DE3)-pET24-agaB
Add competence BL21 (DE3) that 100 μ l thaw and be connected liquid to the 1.5mlEppendorf pipe with 10 μ l embodiment 4 obtain, ice bath 30min, 42 ℃ of 90s, ice bath 3min, add LB substratum 900 μ l, 37 ℃ of shaking culture 1 hour are coated bacterium liquid on the LB flat board that contains 30 μ g/ml kantlex 37 ℃ of overnight incubation.The single bacterium colony of picking white is PCR and is detected, and presents the positive conversion bacterium colony of the special band person of 1.4kb in the agarose gel electrophoresis, promptly contains intestinal bacteria recombinant strain BL21 (DE3)-pET24-agaB of pET24-agaB.
Embodiment 6: the preparation of recombinant beta-agarase
Picking intestinal bacteria recombinant strain BL21 (DE3)-pET24-agaB mono-clonal is in containing the liquid nutrient medium that concentration is 30 μ g/ml kantlex LB, and 37 ℃ of shaking culture are spent the night.Be seeded to 1L by 1:50 and contain in the liquid LB substratum that concentration is 30 μ g/ml kantlex, 37 ℃ of 200r/min shaking culture are to OD 600Be 0.6, adding final concentration is 1m M IPTG and 0.01% (weight ratio) Sodium desoxycholate, 25 ℃ of abduction delivering 5h.Induce 4 ℃ of centrifugal 10min of 10000g of bacterium liquid, collect supernatant liquor, supernatant liquor successively concentrates through ultrafiltration and embedding, extremely uses binding buffer liquid (the Native Binding Buffer pH7.8) PreBond that balance is good on the concentrated solution TMResin column (Invitrogen) is respectively 6.0 and 5.5 lavation buffer solution (Native Wash Buffer) washing affinity column to elutant OD with binding buffer liquid and pH value successively 280<0.01, be 4.0 elutriant (Native Elution Buffer) wash-out affinity column at last with pH, collect elutriant.SDS-PAGE detects albumen distribution in the elutriant, merges the elutriant that contains the single purpose band and can obtain recombinant beta-agarase, and its speculating acid sequence is seen accompanying drawing 2.Measure target protein concentration with the Lowry method, after the packing with albumen frozen in-80 ℃ with standby.
Embodiment 7: expression product is used to prepare new fine jade oligosaccharides
When preparing new fine jade oligosaccharides, agarose is dissolved in 0.1M phosphate buffered saline buffer (pH7.5), be made into weight percent concentration and be 0.1%~1.0% solution, by weight 0.1-1: 100 add the recombinant beta-agarase of gained among the embodiment 6, after mixing, 30 ℃ of temperature are bathed 5-24h, and 80-90% is that the polymerization degree is the new fine jade oligosaccharides of 8-14.

Claims (7)

1, a kind of β-agarase gene agaB is characterized in that it is the gene of β-agarase of the false other Zymomonas mobilis CY24 of coding, and has
ATGTTAAAGCGCCACCAAGCTTCAAGGAAGGTTTCATCATCATTAGTGGCTTTGTTAAAGCCT
TCGGCCATTGCGGTTCTAGCAACCGTTGCTTTGGCTAGCGGCGCAAATGCCGCTAACTATACG
GCCAGCAATGCCAGCCAGCTAAGTGCTCGTTTGCAAGATGCAGCCAACAACGGCACCGGCGTA
GATGTTATTACCATTCAAGGCAGCATATTTACCGACCAGCAAATTGATATTCAAACTCCGGTA
ACTATTCAAGGTGCAGCTGGGTTTCGCGTAAGCCGTATCATTCGTACTTCTGATGATGGTTTT
CAACCTTTGTTTAATATTCAAAGTTCGAATGTGACTATTCGTAATTTGCTGCTAATTGATGAG
AAAGGCCAAAATACTAATACCCAAGTGGCCAGTGAAGCAGGGAACGACCACTCAAATGCGCGC
TTAATTAACATTCCTTACGAAGATGCTTATCAGCAAATTGCTAACATCACCATCGAAAACAAT
ACCTTTGAAAATACCGCTGTTGGTGTGGCGTCTTCTGGTTTAATTCCGCGTAATTTGTCGATT
ACCAATAATGACTTTATTAAAGTGAATCGCAGCGTAGAGCTGCTACGAGATGTTGGCCGGGTA
TACAACGTGTGGAATGTAAGTGCTAACAACGTAGTGCTTAACGGCGGAACACTAAACATTTCA
AATAACCGTATTCGTGGTAATCGAGTGCGTTTAGGGATCTCTGTAGATGCGGGCAACGACGGG
GTTTACGTGCCGCCAAGCTTTACCAACATTCCGTTTTTTGATGCAGCAGCCCGTGCTCAGTTT
AGTGATAAACCGGTCGTGTTTGCCAATGGCTCGCAAGTTAACTCAAACACTGTAGAGGGGGCC
AACGAGTTTGGCATTGCTTTGGCTACTGTGGCTAACGTAACTGTTGCGGGTAACACAGTGAGT
ACAACAGAAGATGACATTAACTCGTCTGACGATATCGAGAACAACTTCACAGCGGGCATCAAT
GTTGAACATAACAGCCGCGATATTGTGGTAGATAGCAATACTATTACCGTGGGTGCTTCAGGC
AACTTTGCTACGGGTATTAACGTATTGGCCTTTCAAGATCACCACGCGCCGTTAAATCATGCT
CAAGCTAGCAGCAACATAACTTTGGTTAGAAACATCTTTAAAGGAACTGGCGAGAACACCATT
TTAGCCTTTGGCTTCTCTAACTTAGTGGTTGAAGACAACAATGCCTCGCAGTTTACAACGCGT
AACCCTTACCAAGTAACGGCGTCTTTTTACAACGTGCCTTGTGGTTTAAGTACTAGCACTGCA
CGCGGTACTAACAACAATATTCGTTACAACCAAAGCTCGTTTAACGGCACCGGCAATGCGCCG
Nucleotide sequence shown in the CAGTACTACGACAAAAACGGTAACGTTGTGTCAGGTTATACTTGCCAATAG.
2, escherichia coli cloning carrier pBS-agaB, it contains the described β of claim 1-agarase gene agaB.
3, intestinal bacteria recombinant strain DH5 α-pBS-agaB, it contains the described escherichia coli cloning carrier of claim 2 pBS-agaB.
4, coli expression carrier pET24-agaB, it contains the described β of claim 1-agarase gene agaB.
5, intestinal bacteria recombinant strain BL21 (DE3)-pET24-agaB, it contains the described coli expression carrier pET24-agaB of claim 4.
6, recombinant beta-agarase, it is by the described intestinal bacteria recombinant strain of claim 5 BL21 (DE3)-pET24-agaB generation of fermenting.
7, the described recombinant beta-agarase of claim 6 prepares application in the new fine jade oligosaccharides at the degraded agarose.
CNB031125182A 2003-06-06 2003-06-06 Beta-agaropectionase gene aga B, its preparation method and application Expired - Fee Related CN1224709C (en)

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Publication number Priority date Publication date Assignee Title
CN103194435B (en) * 2013-04-09 2014-07-09 中国海洋大学 Beta-agarase and applications thereof
KR101521711B1 (en) * 2013-10-14 2015-05-19 고려대학교 산학협력단 Novel β-agarooligosaccharide hydrolase and enzymatic production method of 3,6-anhydro-L-galactose and galactose from agarose by using the same
CN105420142B (en) * 2015-10-13 2018-11-09 中国海洋大学 A method of producing agarase from the bacterium Pseudoalteromonas.sp.QJ97 of marine organisms and with it
CN105506032A (en) * 2016-02-25 2016-04-20 福建省绿麒食品胶体有限公司 Preparation method and application of Gracilaria agar oligosaccharide promoting growth of Lactobacillus bulgaricus
CN106834379A (en) * 2016-09-26 2017-06-13 中国海洋大学 A kind of preparation method and applications of new fine jade tetrose
CN112370368A (en) * 2019-12-27 2021-02-19 青岛博智汇力生物科技有限公司 Moisturizing cream containing neoagaro-oligosaccharide

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