CN118221694A - Preparation method of high-purity 5, 6-carboxyfluorescein - Google Patents

Preparation method of high-purity 5, 6-carboxyfluorescein Download PDF

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Publication number
CN118221694A
CN118221694A CN202211634057.8A CN202211634057A CN118221694A CN 118221694 A CN118221694 A CN 118221694A CN 202211634057 A CN202211634057 A CN 202211634057A CN 118221694 A CN118221694 A CN 118221694A
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carboxyfluorescein
solid
eluent
triethylamine
purity
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蒋析文
钟雯
黄江磊
余汤昊
贺国强
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Guangzhou Da'an Gene Co ltd
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Guangzhou Da'an Gene Co ltd
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    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D493/00Heterocyclic compounds containing oxygen atoms as the only ring hetero atoms in the condensed system
    • C07D493/02Heterocyclic compounds containing oxygen atoms as the only ring hetero atoms in the condensed system in which the condensed system contains two hetero rings
    • C07D493/10Spiro-condensed systems
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    • C09K11/00Luminescent, e.g. electroluminescent, chemiluminescent materials
    • C09K11/06Luminescent, e.g. electroluminescent, chemiluminescent materials containing organic luminescent materials
    • CCHEMISTRY; METALLURGY
    • C09DYES; PAINTS; POLISHES; NATURAL RESINS; ADHESIVES; COMPOSITIONS NOT OTHERWISE PROVIDED FOR; APPLICATIONS OF MATERIALS NOT OTHERWISE PROVIDED FOR
    • C09KMATERIALS FOR MISCELLANEOUS APPLICATIONS, NOT PROVIDED FOR ELSEWHERE
    • C09K2211/00Chemical nature of organic luminescent or tenebrescent compounds
    • C09K2211/10Non-macromolecular compounds
    • C09K2211/1018Heterocyclic compounds
    • C09K2211/1025Heterocyclic compounds characterised by ligands
    • C09K2211/1088Heterocyclic compounds characterised by ligands containing oxygen as the only heteroatom

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  • Organic Low-Molecular-Weight Compounds And Preparation Thereof (AREA)

Abstract

The invention provides a preparation method of high-purity 5, 6-carboxyfluorescein, in particular to a preparation method of high-purity 6-carboxyfluorescein by gradient elution with reversed-phase filler, which can completely separate high-purity 6-carboxyfluorescein and high-purity 5-carboxyfluorescein, greatly improves the purification efficiency of carboxyfluorescein, and has the advantages of multi-batch preparation and stable process.

Description

Preparation method of high-purity 5, 6-carboxyfluorescein
Technical Field
The invention belongs to the field of biochemistry, and particularly relates to a preparation method of high-purity 5, 6-carboxyfluorescein.
Background
The compounds on which fluorescent labels depend are called fluorescent substances. The fluorescent substance is a compound having a conjugated double bond system chemical structure, and is excited to an excited state when irradiated with ultraviolet light or blue-violet light, and emits fluorescence when the excited state is recovered to a ground state. Fluorescent labeling refers to the use of fluorescent substances covalently bound or physically adsorbed to a group of the molecule to be studied, and its fluorescent properties are used to provide information about the object under study. The fluorescent marker has the advantages of no radioactive contamination, simple operation and the like, so that the fluorescent marker is widely applied in a plurality of research fields.
TaqMan fluorescent probe is an oligonucleotide probe, the 5 'end of which carries a fluorescent group, such as FAM, TET, VIC, HEX, etc., and the 3' end of which carries a quenching group, such as TAMRA, BHQ, etc. During PCR amplification, a pair of primers is added, and a specific fluorescent probe is added, so that when the probe is complete, fluorescent signals emitted by the reporter group are absorbed by the quenching group; during PCR amplification, the 5'-3' exonuclease activity of Taq enzyme is used for carrying out enzyme digestion degradation on the probe to separate a report fluorescent group from a quenching fluorescent group, so that a fluorescence monitoring system can receive a fluorescence signal, namely, one fluorescence molecule is formed for each amplified DNA chain, and the accumulation of the fluorescence signal and the formation of a PCR product are completely synchronous.
The 5 (6) -carboxyfluorescein has good optical parameters, higher quantum yield and molar absorptivity, so that the 5 (6) -carboxyfluorescein is widely applied to the aspects of biomarkers and the like, and the 5 (6) -carboxyfluorescein mixture brings a plurality of limitations to the application of labeled probes, including probe purification and the like, so that the separation and purification of high-purity fluorescein isomers are important.
The main method for purifying the current fluorescein isomer is a crystallization method, a 5 (6) -carboxyl fluorescein mixture is dissolved in a solvent A, a solvent B is slowly added after the mixture is dissolved, the mixture is cooled to 0 ℃, diisopropylamine is slowly added to slowly wash out solids, the solids are left stand at low temperature, the solids are obtained after filtration, the solids are dissolved in ethyl acetate and subjected to acid regulation, and 6-carboxyl fluorescein is obtained after layering and concentration, the purity is 95% (refer to patent document CN 115197237A), the purity is still lower, and the practical application requirements are difficult to meet.
Disclosure of Invention
The invention relates to a preparation and purification method of fluorescein isomers, in particular to preparation and separation of 5 (6) -carboxyl fluorescein, which can be used for preparation and purification of 5 (6) -carboxyl-2 ', 4',5', 7' -hexachlorofluorescein.
In a first aspect of the present invention, there is provided a process for the preparation of 5 (6) -carboxyfluorescein (5, 6-carboxyfluorescein), said process comprising the steps of: the crude carboxyfluorescein mixture containing 6-carboxyfluorescein and 5-carboxyfluorescein was purified using reverse phase chromatography.
In another preferred embodiment, the reversed phase chromatography uses octadecylsilane chemically bonded silica packing.
In another preferred embodiment, the eluent of the reverse phase chromatography comprises: acetonitrile and/or triethylamine-carbonic acid buffer solution.
In another preferred embodiment, the upper column sample of the reverse phase chromatography is a crude carboxyfluorescein mixture dissolved in a potassium carbonate solution.
In another preferred embodiment, the concentration of the potassium carbonate solution is 0.5-2mol/L; preferably about 1mol/L.
In another preferred embodiment, the method comprises the steps of:
Loading the crude carboxyfluorescein mixture dissolved by potassium carbonate solution on a column, eluting by using an eluent, and collecting the 6-carboxyfluorescein and 5-carboxyfluorescein eluent in a fractional manner;
wherein the eluent is acetonitrile/triethylamine-carbonic acid buffer solution gradient eluent; the elution gradient is preferably set to 0 to 20% by volume of acetonitrile.
In another preferred embodiment, the method further comprises the steps of:
acid regulating the 6-carboxyl fluorescein eluent to precipitate solid, and collecting 6-carboxyl fluorescein solid precipitate; and/or
The 5-carboxyfluorescein eluate was acidified to precipitate a solid, and the 5-carboxyfluorescein solid precipitate was collected.
In another preferred embodiment, the method further comprises the steps of:
extracting with ethyl acetate to remove the filtrate of the solid precipitate of the 6-carboxyfluorescein, and evaporating the organic phase to obtain a solid of the 6-carboxyfluorescein; and/or
The filtrate of the solid precipitate of 5-carboxyfluorescein was removed by extraction with ethyl acetate and the organic phase was evaporated to dryness to obtain a solid of 5-carboxyfluorescein.
In another preferred embodiment, the method further comprises the step of pre-treating the reverse phase chromatography column prior to loading the column.
In another preferred embodiment, the step of pre-treating the reverse phase chromatography column comprises:
The column was then flushed 3-5 column volumes with triethylamine-carbonic acid buffer.
In another preferred embodiment, the triethylamine-carbonic acid buffer solution is about 0.05 to about 0.2M triethylamine-carbonic acid buffer solution; preferably, the triethylamine-carbonic acid buffer solution is about 0.1M triethylamine-carbonic acid buffer solution.
In another preferred embodiment, the 5-carboxyfluorescein is 5-carboxy-2 ', 4',5', 7' -hexachlorofluorescein; the 6-carboxyfluorescein is 6-carboxyl-2 ', 4',5', 7' -hexachlorofluorescein.
It is understood that within the scope of the present invention, the above-described technical features of the present invention and technical features specifically described below (e.g., in the examples) may be combined with each other to constitute new or preferred technical solutions. And are limited to a space, and are not described in detail herein.
Drawings
FIG. 1 shows the HPLC detection result of the crude carboxyfluorescein mixture prepared in example 1;
FIG. 2 shows the HPLC detection result of the prepared high purity 6-carboxyfluorescein;
FIG. 3 shows the HPLC detection result of the prepared high purity 5-carboxyfluorescein.
Detailed Description
Through extensive and intensive research, the inventor unexpectedly discovers that the high-purity 6-carboxyfluorescein and the high-purity 5-carboxyfluorescein can be completely separated by using the reversed-phase packing for gradient elution, the purification efficiency of the carboxyfluorescein is greatly improved, and the preparation process is stable in multiple batches. On the basis, the preparation method of the carboxyfluorescein with high yield and high purity is obtained.
Before describing the present invention, it is to be understood that this invention is not limited to the particular methodology and experimental conditions described, as such methods and conditions may vary. It is also to be understood that the terminology used herein is for the purpose of describing particular embodiments only, and is not intended to be limiting, as the scope of the present invention will be limited only by the appended claims.
Unless defined otherwise, all technical and scientific terms used herein have the same meaning as commonly understood by one of ordinary skill in the art to which this invention belongs. As used herein, when used in reference to a specifically recited value, the term "about" means that the value can vary no more than 1% from the recited value. For example, as used herein, the expression "about 100" includes 99 and 101 and all values therebetween (e.g., 99.1, 99.2, 99.3, 99.4, etc.).
Although any methods and materials similar or equivalent to those described herein can be used in the practice or testing of the present invention, the preferred methods and materials are described herein.
In the invention, liquid chromatography is adopted to purify the carboxyfluorescein.
Liquid chromatography is classified into normal phase chromatography and reverse phase chromatography according to the relative polarities of mobile phase and stationary phase. The case where the mobile phase polarity is greater than the stationary phase polarity is called Reverse Phase Chromatography (RPC). Reversed Phase Chromatography (RPC) uses a nonpolar reversed phase medium as a stationary phase, an aqueous solution of a polar organic solvent as a mobile phase, and elution chromatography for separating and purifying a solute according to the difference in polarity (hydrophobicity) of the solute.
In the process of the present invention, carboxyfluorescein is preferably purified by reverse phase chromatography. More preferably, the carboxyfluorescein is purified using a C18 reverse phase chromatography column (C18 column).
The C18 column is a commonly used reversed-phase chromatographic column, also called ODS column, and the packing material is octadecylsilane chemically bonded silica packing (Octadecylsilyl, ODS for short). Because C18 (ODS) is a long-chain alkyl bonding phase, has higher carbon content and better hydrophobicity, has stronger adaptability to various biological macromolecules, and is widely applied to biochemical analysis work.
The general synthesis method of carboxyfluorescein comprises the following steps:
taking trimellitic anhydride and resorcinol, and methanesulfonic acid as a solvent, and reacting for 6 hours at 80 ℃.
Post-treatment: adding into ice water, extracting with ethyl acetate, concentrating and drying the extract.
In a preferred embodiment, the purification method for preparing high-purity carboxyfluorescein provided by the invention is as follows:
Purifying with C18 column, eluting with 0.1M triethylamine-carbonic acid buffer solution (mobile phase A) and acetonitrile, dissolving crude carboxyfluorescein with 1M K 2CO3 solution, loading, gradient eluting, collecting 6-carboxyfluorescein and 5-carboxyfluorescein eluate (about 3% of acetonitrile peak, 6-carboxyfluorescein, and 10% peak, 5-carboxyfluorescein). The pH of the eluent of 6-carboxyfluorescein and 5-carboxyfluorescein is respectively regulated to about 1 by hydrochloric acid, precipitated solids are collected, and filtrate is concentrated and evaporated to dryness after extraction by ethyl acetate. The obtained solid substance is the high-purity carboxyfluorescein.
The invention has the main advantages that:
(1) Purification of carboxyfluorescein using reverse phase chromatography was first proposed;
(2) The method can greatly improve the purification efficiency of the carboxyfluorescein;
(3) The existing 6-carboxyfluorescein purification method is at the cost of discarding 5-carboxyfluorescein, and the method can be used for preparing high-purity 6-carboxyfluorescein and 5-carboxyfluorescein simultaneously, so that the comprehensive benefit is higher.
The present invention will be described in further detail with reference to the following examples. It is to be understood that these examples are illustrative of the present invention and are not intended to limit the scope of the present invention. The experimental methods for which detailed conditions are not noted in the following examples are generally conducted under conventional conditions or under conditions recommended by the manufacturer. Percentages and parts are by weight unless otherwise indicated. The experimental materials and reagents used in the following examples were obtained from commercial sources unless otherwise specified.
Example 1
50G of trimellitic anhydride is weighed at room temperature, added into a 2L three-necked flask, added with a magnetic stirrer, then added with 103g of resorcinol and 500mL of methanesulfonic acid in sequence, and reacted for 6 hours at the temperature of 80 ℃.
The reaction phenomenon is that the materials are gradually dissolved and changed into a brick red solution from light yellow.
After the reaction is finished, cooling the reaction liquid to room temperature, adding the reaction liquid into 2L of ice water, adding 500mL multiplied by 3 ethyl acetate for extraction, combining organic phases, drying by anhydrous sodium sulfate, and concentrating to obtain a carboxyfluorescein mixture crude product.
6-Carboxyfluorescein as detected by HPLC: 5-carboxyfluorescein was 50:49. The HPLC detection results are shown in FIG. 1.
The crude product was purified by reverse C18 packing column, a 36mm x 460mm medium pressure glass column was taken, ethanol was added to the silica gel matrix reverse C18 packing, stirred, poured into the glass column, and after filling, the glass column was flushed with 4 column volumes using 0.1M TEAB aqueous solution (triethylamine-carbonic acid buffer, mobile phase a).
After the C18 column was washed clean, the crude product was dissolved in 200mL of 1mol/L potassium carbonate solution, loaded with an eluent of 0.1M TEAB aqueous solution and acetonitrile, and eluted in a gradient of 0 to 20% by volume of acetonitrile.
The elution gradient is about 3%, and the elution peak is 6-carboxyfluorescein; the elution gradient reaches about 10%, the elution peak is 5-carboxyfluorescein, and the 6-carboxyfluorescein and the 5-carboxyfluorescein eluent are collected in parts.
The pH value of the eluent of the 6-carboxyfluorescein and the 5-carboxyfluorescein is respectively regulated by dilute hydrochloric acid until solid is separated out, and the solid is filtered by a Buchner funnel to obtain filter residues.
Extracting the filtrate with 400ml ethyl acetate for three times to obtain organic phase, spin drying, mixing with the residue, and oven drying in vacuum oven to obtain 6-carboxyfluorescein product 44.3g with yield 45%, purity 99.5%, and HPLC chart shown in figure 2; 41.35g of 5-carboxyfluorescein with 42 percent of yield and 99.8 percent of purity, and the HPLC chart is shown in figure 3.
Example 2
Crude carboxyfluorescein mixture (6-carboxyfluorescein: 5-carboxyfluorescein 50:49) was purified by reverse C18 packed column.
A 36mm size medium pressure glass column was taken, ethanol was added to the silica gel matrix reversed phase C18 packing, stirred, poured into the glass column, and after filling, the glass column was flushed with 4 column volumes using 0.1M aqueous TEAB (triethylamine-carbonic acid buffer, mobile phase a).
After the C18 column was washed clean, the crude product was dissolved in 200mL of 1mol/L potassium carbonate solution, loaded with an eluent of 0.1M TEAB aqueous solution and acetonitrile, and eluted in a gradient of 0 to 20% by volume of acetonitrile.
The elution gradient is about 3%, and the elution peak is 6-carboxyfluorescein; the elution gradient reaches about 10%, the elution peak is 5-carboxyfluorescein, and the 6-carboxyfluorescein and the 5-carboxyfluorescein eluent are collected in parts.
The pH value of the eluent of the 6-carboxyfluorescein and the 5-carboxyfluorescein is respectively regulated by dilute hydrochloric acid until solid is separated out, and the solid is filtered by a Buchner funnel to obtain filter residues.
Extracting the filtrate with 400ml ethyl acetate for three times to obtain an organic phase, spin-drying, mixing with the filter residue, and drying in a vacuum drying oven to obtain 43.8g of 6-carboxyfluorescein product with purity of 99.6%; 40.6g of 5-carboxyfluorescein with the purity of 99.5 percent.
Example 3
Crude carboxyfluorescein mixture (6-carboxyfluorescein: 5-carboxyfluorescein 50:49) was purified by reverse C18 packed column.
A 36mm size medium pressure glass column was taken, ethanol was added to the silica gel matrix reversed phase C18 packing, stirred, poured into the glass column, and after filling, the glass column was flushed with 4 column volumes using 0.1M aqueous TEAB (triethylamine-carbonic acid buffer, mobile phase a).
After the C18 column was washed clean, the crude product was dissolved in 200mL of 1mol/L potassium carbonate solution, loaded with an eluent of 0.1M TEAB aqueous solution and acetonitrile, and eluted in a gradient of 0 to 20% by volume of acetonitrile.
The elution gradient is about 3%, and the elution peak is 6-carboxyfluorescein; the elution gradient reaches about 10%, the elution peak is 5-carboxyfluorescein, and the 6-carboxyfluorescein and the 5-carboxyfluorescein eluent are collected in parts.
The pH value of the eluent of the 6-carboxyfluorescein and the 5-carboxyfluorescein is respectively regulated by dilute hydrochloric acid until solid is separated out, and the solid is filtered by a Buchner funnel to obtain filter residues.
Extracting the filtrate with 400ml ethyl acetate for three times to obtain an organic phase, spin-drying, mixing with the filter residue, and drying with a vacuum drying oven to obtain 47.2g of 6-carboxyfluorescein product with purity of 99.5%; 44.6g of 5-carboxyfluorescein with the purity of 99.5 percent.
All documents mentioned in this disclosure are incorporated by reference in this disclosure as if each were individually incorporated by reference. Further, it will be appreciated that various changes and modifications may be made by those skilled in the art after reading the above teachings, and such equivalents are intended to fall within the scope of the application as defined in the appended claims.

Claims (10)

1. A process for the preparation of 5 (6) -carboxyfluorescein, said process comprising the steps of: the crude carboxyfluorescein mixture containing 6-carboxyfluorescein and 5-carboxyfluorescein was purified using reverse phase chromatography.
2. The method of claim 1, wherein the reversed phase chromatography uses octadecylsilane chemically bonded silica packing.
3. The method of claim 1, wherein the eluent of the reverse phase chromatography comprises: acetonitrile and triethylamine-carbonic acid buffer.
4. The method of claim 1, wherein the column sample of the reverse phase chromatography is a crude carboxyfluorescein mixture dissolved in a potassium carbonate solution.
5. The method of claim 4, wherein the potassium carbonate solution has a concentration of 0.5 to 2mol/L.
6. The method according to claim 4, wherein the method comprises the steps of:
Dissolving the crude carboxyfluorescein mixture with potassium carbonate solution, loading on a column, eluting with eluent, and collecting 6-carboxyfluorescein and 5-carboxyfluorescein eluents in parts;
Wherein the eluent is acetonitrile/triethylamine-carbonic acid buffer solution gradient eluent.
7. The method of claim 6, wherein the elution gradient is set to 0 to 20% by volume of acetonitrile.
8. The method of claim 6, wherein the method further comprises the step of:
acid regulating the 6-carboxyl fluorescein eluent to precipitate solid, and collecting 6-carboxyl fluorescein solid precipitate; and/or
The 5-carboxyfluorescein eluate was acidified to precipitate a solid, and the 5-carboxyfluorescein solid precipitate was collected.
9. The method of claim 6, wherein the method further comprises the step of:
extracting with ethyl acetate to remove the filtrate of the solid precipitate of the 6-carboxyfluorescein, and evaporating the organic phase to obtain a solid of the 6-carboxyfluorescein; and/or
The filtrate of the solid precipitate of 5-carboxyfluorescein was removed by extraction with ethyl acetate and the organic phase was evaporated to dryness to obtain a solid of 5-carboxyfluorescein.
10. The method of claim 6, wherein the triethylamine-carbonic acid buffer solution is about 0.05M to about 0.2M triethylamine-carbonic acid buffer solution.
CN202211634057.8A 2022-12-19 2022-12-19 Preparation method of high-purity 5, 6-carboxyfluorescein Pending CN118221694A (en)

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