CN117757770A - Carboxylesterase mutant and application thereof - Google Patents
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Classifications
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- Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
- Y02—TECHNOLOGIES OR APPLICATIONS FOR MITIGATION OR ADAPTATION AGAINST CLIMATE CHANGE
- Y02W—CLIMATE CHANGE MITIGATION TECHNOLOGIES RELATED TO WASTEWATER TREATMENT OR WASTE MANAGEMENT
- Y02W30/00—Technologies for solid waste management
- Y02W30/50—Reuse, recycling or recovery technologies
- Y02W30/62—Plastics recycling; Rubber recycling
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- Enzymes And Modification Thereof (AREA)
Abstract
本发明公开了羧酸酯酶突变体及其应用。本发明公开的羧酸酯酶突变体为如下A1)、A2)或A3):A1)氨基酸序列是序列4的蛋白质;A2)将序列表中序列4中第429位外的氨基酸序列经过一个或几个氨基酸残基的取代和/或缺失和/或添加且具有相同功能的蛋白质;A3)在A1)或A2)的N端或/和C端连接标签得到的融合蛋白质。本发明利用定点突变技术将原有羧酸酯酶(Tcca)进行突变,得到一种羧酸酯酶突变体,改变了原有羧酸酯酶活性较低的问题,有效提高Tcca降解BHET的活性,提升Tcca的降解效果,本发明的羧酸酯酶突变体提高了BHET的降解效率,工业应用前景良好。The invention discloses carboxylesterase mutants and their applications. The carboxylesterase mutant disclosed in the present invention is as follows A1), A2) or A3): A1) the amino acid sequence is the protein of sequence 4; A2) the amino acid sequence other than the 429th position in sequence 4 in the sequence listing is passed through a or A protein with the same function that has the substitution and/or deletion and/or addition of several amino acid residues; A3) a fusion protein obtained by connecting a tag to the N-terminus or/and C-terminus of A1) or A2). The present invention uses site-directed mutation technology to mutate the original carboxylesterase (Tcca) to obtain a carboxylesterase mutant, which changes the problem of low activity of the original carboxylesterase and effectively improves the activity of Tcca in degrading BHET. , improve the degradation effect of Tcca, the carboxylesterase mutant of the present invention improves the degradation efficiency of BHET, and has good industrial application prospects.
Description
技术领域Technical field
本发明涉及基因工程领域中,羧酸酯酶突变体及其应用。The present invention relates to carboxylesterase mutants and their applications in the field of genetic engineering.
背景技术Background technique
聚酯类塑料PET(如聚对苯二甲酸乙二醇酯)主要作为纺织工业的合成聚酯织物,以及食品和饮料的包装材料,PET已成为最重要的大规模生产的石化塑料之一。大多数PET产品有较高的结晶度,具有抵抗机械和化学应力的耐久性。PET由对苯二甲酸(TPA)和乙二醇(EG)通过酯键聚合而成,性质稳定不易分解,常用于矿泉水瓶、涤纶衣服和吸塑包装等产品。The polyester plastic PET (such as polyethylene terephthalate) is mainly used as a synthetic polyester fabric in the textile industry and as a packaging material for food and beverages. PET has become one of the most important mass-produced petrochemical plastics. Most PET products have a high degree of crystallinity and are durable against mechanical and chemical stress. PET is made of terephthalic acid (TPA) and ethylene glycol (EG) polymerized through ester bonds. It is stable and difficult to decompose. It is often used in mineral water bottles, polyester clothes, blister packaging and other products.
目前对塑料PET废弃物的处理方法主要有:填埋、焚烧以及回收利用等。填埋和焚烧虽然简单,但产生的废气、废水会对环境造成二次污染;回收利用由于回收成本的经济性和回收塑料的性能问题,导致现阶段回收利用率较低。近年来,越来越多的研究者关注塑料的生物降解,相比于物理化学降解方法,生物降解更加绿色环保、生态友好。如利用酶降解将PET降解成组成分子,然后回收再利用才是真正的分解塑料,且是最理想的处理方法之一。此法不但解决了PET废弃物、的问题,并且能够回收利用。在过去的十几年中,科学家已经从酯酶(esterase)、脂肪酶(lipase)和角质酶(cutinase)等水解酶中发现了它们对PET降解的活力,证明了PET生物降解的可能性,这些水解酶都属于α/β水解酶家族。At present, the main methods for processing plastic PET waste are: landfill, incineration and recycling. Although landfilling and incineration are simple, the waste gas and waste water produced will cause secondary pollution to the environment; due to the economical cost of recycling and performance issues with recycled plastics, the current recycling rate is low. In recent years, more and more researchers have paid attention to the biodegradation of plastics. Compared with physical and chemical degradation methods, biodegradation is more environmentally friendly and ecologically friendly. For example, using enzymatic degradation to degrade PET into its component molecules, and then recycling and reusing it, is the real decomposition of plastics, and it is one of the most ideal processing methods. This method not only solves the problem of PET waste, but also can be recycled. In the past decade or so, scientists have discovered the activity of hydrolases such as esterase, lipase and cutinase in degrading PET, proving the possibility of PET biodegradation. These hydrolases all belong to the α/β hydrolase family.
羧酸酯酶(carboxylesterase)在结构上与脂肪酶相似,具有保守的Ser-Glu/Asp-His三联体结构,属于α/β水解酶家族,但在底物特异性方面有差异,羧酸酯酶更倾向于水解酰基链长度较小的底物,而脂肪酶倾向于水解酰基链长度较大的底物。羧酸酯酶对BHET有良好的降解活性,BHET是PET水解的中间产物,反应中间产物的累积是限制PET水解酶降解效率的一个重要因素。所以提高降解BHET酶的活性,为PET降解研究提供更多理论基础和实验依据,对保护人类生态环境具有积极意义。Carboxylesterase is structurally similar to lipase, has a conserved Ser-Glu/Asp-His triplet structure, and belongs to the α/β hydrolase family, but there are differences in substrate specificity. Carboxyl esters Enzymes prefer to hydrolyze substrates with smaller acyl chain lengths, whereas lipases prefer to hydrolyze substrates with larger acyl chain lengths. Carboxylesterase has good degradation activity against BHET, which is an intermediate product of PET hydrolysis. The accumulation of reaction intermediate products is an important factor limiting the degradation efficiency of PET hydrolase. Therefore, improving the activity of BHET-degrading enzymes will provide more theoretical basis and experimental basis for PET degradation research, which is of positive significance for protecting the human ecological environment.
发明内容Contents of the invention
本发明所要解决的技术问题是如何降解聚对苯二甲酸乙二醇酯(PET)。The technical problem to be solved by the present invention is how to degrade polyethylene terephthalate (PET).
为解决上述技术问题,本发明首先提供了一种蛋白质,所述蛋白质名称为Tcca-W429A,Tcca-W429A为如下A1)、A2)或A3):In order to solve the above technical problems, the present invention first provides a protein, the name of the protein is Tcca-W429A, and Tcca-W429A is as follows A1), A2) or A3):
A1)氨基酸序列是序列4的蛋白质;A1) The amino acid sequence is a protein of sequence 4;
A2)将序列表中序列4中第429位外的氨基酸序列经过一个或几个氨基酸残基的取代和/或缺失和/或添加且具有相同功能的蛋白质;A2) A protein with the same function by substituting and/or deleting and/or adding one or several amino acid residues to the amino acid sequence other than position 429 in Sequence 4 in the sequence listing;
A3)在A1)或A2)的N端或/和C端连接标签得到的融合蛋白质。A3) A fusion protein obtained by connecting a tag to the N-terminus or/and C-terminus of A1) or A2).
为了使A1)中的蛋白质便于纯化,可在由序列表中序列4所示的氨基酸序列组成的蛋白质的氨基末端或羧基末端连接上如下表所示的标签。In order to facilitate the purification of the protein in A1), a tag as shown in the table below can be connected to the amino terminus or carboxyl terminus of the protein consisting of the amino acid sequence shown in Sequence 4 in the sequence listing.
表:标签的序列Table: Sequence of tags
上述A2)中的Tcca-W429A蛋白质,为与序列4所示蛋白质的氨基酸序列具有75%或75%以上同一性且具有相同功能的蛋白质。所述具有75%或75%以上同一性为具有75%、具有80%、具有85%、具有90%、具有95%、具有96%、具有97%、具有98%或具有99%的同一性。The Tcca-W429A protein in A2) above is a protein that has 75% or more identity with the amino acid sequence of the protein shown in Sequence 4 and has the same function. The said having 75% or more identity means having 75%, having 80%, having 85%, having 90%, having 95%, having 96%, having 97%, having 98% or having 99% identity. .
上述A2)中的Tcca-W429A蛋白质可人工合成,也可先合成其编码基因,再进行生物表达得到。The Tcca-W429A protein in A2) above can be synthesized artificially, or its encoding gene can be synthesized first and then biologically expressed.
上述A2)中的Tcca-W429A蛋白质的编码基因可通过将序列3所示的DNA序列中缺失一个或几个氨基酸残基的密码子,和/或进行一个或几个碱基对的错义突变,和/或在其5′端和/或3′端连上上表所示的标签的编码序列得到。其中,序列3所示的DNA分子编码序列4所示的Tcca-W429A蛋白质。The gene encoding the Tcca-W429A protein in A2) above can be obtained by deleting the codon of one or several amino acid residues in the DNA sequence shown in Sequence 3, and/or performing a missense mutation of one or several base pairs. , and/or obtained by connecting the coding sequence of the tag shown in the above table to its 5′ end and/or 3′ end. Among them, the DNA molecule shown in sequence 3 encodes the Tcca-W429A protein shown in sequence 4.
具体的,A2)所述蛋白质可为序列8所示的蛋白质。Specifically, the protein in A2) may be the protein shown in sequence 8.
本发明还提供了与Tcca-W429A相关的生物材料,所述生物材料为下述B1)至B4)中的任一种:The present invention also provides biological materials related to Tcca-W429A, and the biological materials are any one of the following B1) to B4):
B1)编码Tcca-W429A的核酸分子;B1) Nucleic acid molecule encoding Tcca-W429A;
B2)含有B1)所述核酸分子的表达盒;B2) An expression cassette containing the nucleic acid molecule described in B1);
B3)含有B1)所述核酸分子的重组载体、或含有B2)所述表达盒的重组载体;B3) A recombinant vector containing the nucleic acid molecule described in B1), or a recombinant vector containing the expression cassette described in B2);
B4)含有B1)所述核酸分子的重组微生物、或含有B2)所述表达盒的重组微生物、或含有B3)所述重组载体的重组微生物。B4) A recombinant microorganism containing the nucleic acid molecule described in B1), or a recombinant microorganism containing the expression cassette described in B2), or a recombinant microorganism containing the recombinant vector described in B3).
上述生物材料中,B1)所述核酸分子可为如下b11)或b12)或b13)或b14):In the above biological materials, the nucleic acid molecules described in B1) may be the following b11) or b12) or b13) or b14):
b11)编码序列是序列表中序列3的cDNA分子或DNA分子;b11) The coding sequence is a cDNA molecule or DNA molecule of sequence 3 in the sequence listing;
b12)序列表中序列3所示的DNA分子;b12) The DNA molecule shown in sequence 3 in the sequence listing;
b13)与b11)或b12)限定的核苷酸序列具有75%或75%以上同一性,且编码Tcca-W429A的cDNA分子或DNA分子;b13) A cDNA molecule or DNA molecule that has 75% or more identity with the nucleotide sequence defined by b11) or b12) and encodes Tcca-W429A;
b14)在严格条件下与b11)或b12)或b13)限定的核苷酸序列杂交,且编码Tcca-W429A的cDNA分子或DNA分子。b14) A cDNA molecule or DNA molecule that hybridizes to the nucleotide sequence defined by b11) or b12) or b13) under stringent conditions and encodes Tcca-W429A.
其中,所述核酸分子可以是DNA,如cDNA、基因组DNA或重组DNA;所述核酸分子也可以是RNA,如mRNA或hnRNA等。Wherein, the nucleic acid molecule can be DNA, such as cDNA, genomic DNA or recombinant DNA; the nucleic acid molecule can also be RNA, such as mRNA or hnRNA, etc.
本领域普通技术人员可以很容易地采用已知的方法,例如定向进化和点突变的方法,对本发明的编码Tcca-W429A蛋白质的核苷酸序列进行突变。那些经过人工修饰的,具有与本发明的Tcca-W429A蛋白质的核苷酸序列75%或者更高同一性的核苷酸,只要编码Tcca-W429A蛋白质且具有Tcca-W429A蛋白质功能,均是衍生于本发明的核苷酸序列并且等同于本发明的序列。Those of ordinary skill in the art can easily use known methods, such as directed evolution and point mutation methods, to mutate the nucleotide sequence encoding the Tcca-W429A protein of the present invention. Those artificially modified nucleotides that have 75% or higher identity with the nucleotide sequence of the Tcca-W429A protein of the present invention, as long as they encode the Tcca-W429A protein and have the function of the Tcca-W429A protein, are all derived from Nucleotide sequences of the invention and are equivalent to sequences of the invention.
这里使用的术语“同一性”指与天然核酸序列的序列相似性。“同一性”包括与本发明的编码序列4所示的氨基酸序列组成的蛋白质的核苷酸序列具有75%或更高,或85%或更高,或90%或更高,或95%或更高同一性的核苷酸序列。同一性可以用肉眼或计算机软件进行评价。使用计算机软件,两个或多个序列之间的同一性可以用百分比(%)表示,其可以用来评价相关序列之间的同一性。The term "identity" as used herein refers to sequence similarity to a native nucleic acid sequence. "Identity" includes 75% or higher, or 85% or higher, or 90% or higher, or 95% or Nucleotide sequences of higher identity. Identity can be assessed with the naked eye or with computer software. Using computer software, the identity between two or more sequences can be expressed as a percentage (%), which can be used to evaluate the identity between related sequences.
上述生物材料中,所述严格条件可为如下:50℃,在7%十二烷基硫酸钠(SDS)、0.5M NaPO4和1mM EDTA的混合溶液中杂交,在50℃,2×SSC,0.1%SDS中漂洗;还可为:50℃,在7%SDS、0.5M NaPO4和1mM EDTA的混合溶液中杂交,在50℃,1×SSC,0.1%SDS中漂洗;还可为:50℃,在7%SDS、0.5M NaPO4和1mM EDTA的混合溶液中杂交,在50℃,0.5×SSC,0.1%SDS中漂洗;还可为:50℃,在7%SDS、0.5M NaPO4和1mM EDTA的混合溶液中杂交,在50℃,0.1×SSC,0.1%SDS中漂洗;还可为:50℃,在7%SDS、0.5M NaPO4和1mM EDTA的混合溶液中杂交,在65℃,0.1×SSC,0.1%SDS中漂洗;也可为:在6×SSC,0.5%SDS的溶液中,在65℃下杂交,然后用2×SSC,0.1%SDS和1×SSC,0.1%SDS各洗膜一次;也可为:2×SSC,0.1%SDS的溶液中,在68℃下杂交并洗膜2次,每次5min,又于0.5×SSC,0.1%SDS的溶液中,在68℃下杂交并洗膜2次,每次15min;也可为:0.1×SSPE(或0.1×SSC)、0.1%SDS的溶液中,65℃条件下杂交并洗膜。In the above biological materials, the stringent conditions can be as follows: 50°C, hybridization in a mixed solution of 7% sodium dodecyl sulfate (SDS), 0.5M NaPO 4 and 1mM EDTA, 2×SSC at 50°C, Rinse in 0.1% SDS; alternatively: 50°C, hybridize in a mixed solution of 7% SDS, 0.5M NaPO 4 and 1mM EDTA, rinse in 50°C, 1×SSC, 0.1% SDS; alternatively: 50 ℃, hybridize in a mixed solution of 7% SDS, 0.5M NaPO 4 and 1mM EDTA, rinse in 50℃, 0.5×SSC, 0.1% SDS; also: 50℃, in 7% SDS, 0.5M NaPO 4 Hybridize in a mixed solution of 1mM EDTA and 50°C, rinse in 0.1×SSC, 0.1% SDS; alternatively: 50°C, hybridize in a mixed solution of 7% SDS, 0.5M NaPO 4 and 1mM EDTA, rinse at 65 ℃, rinse in 0.1×SSC, 0.1% SDS; also: hybridize in 6×SSC, 0.5% SDS solution at 65℃, then use 2×SSC, 0.1% SDS and 1×SSC, 0.1% Wash the membrane once with each SDS; it can also be: hybridize and wash the membrane twice at 68°C in a solution of 2×SSC, 0.1% SDS, 5 min each time, and then in a solution of 0.5×SSC, 0.1% SDS, at 68°C. Hybridize and wash the membrane twice at 68°C, 15 minutes each time; it can also be hybridized and washed at 65°C in a solution of 0.1×SSPE (or 0.1×SSC) and 0.1% SDS.
上述75%或75%以上同一性,可为80%、85%、90%或95%以上的同一性。The above-mentioned 75% or above identity may be 80%, 85%, 90% or 95% or above identity.
上述生物材料中,B2)所述的含有编码Tcca-W429A蛋白质的核酸分子的表达盒(Tcca-W429A基因表达盒),是指能够在宿主细胞中表达Tcca-W429A蛋白质的DNA,该DNA不但可包括启动Tcca-W429A基因转录的启动子,还可包括终止Tcca-W429A基因转录的终止子。进一步,所述表达盒还可包括增强子序列。Among the above biological materials, the expression cassette containing the nucleic acid molecule encoding Tcca-W429A protein (Tcca-W429A gene expression cassette) described in B2) refers to DNA that can express Tcca-W429A protein in host cells. This DNA can not only It includes a promoter that initiates the transcription of the Tcca-W429A gene, and may also include a terminator that terminates the transcription of the Tcca-W429A gene. Furthermore, the expression cassette may also include an enhancer sequence.
可用现有的表达载体构建含有所述Tcca-W429A基因表达盒的重组载体。Existing expression vectors can be used to construct a recombinant vector containing the Tcca-W429A gene expression cassette.
上述生物材料中,所述载体可为质粒、黏粒、噬菌体或病毒载体。所述质粒具体可为pET32a(+)载体。In the above biological materials, the vector can be a plasmid, cosmid, phage or viral vector. The plasmid may specifically be pET32a(+) vector.
B3)所述重组载体具体可为pET32a-TEV-Tcca-W429A。所述pET32a-TEV-Tcca-W429A为将pET32a(+)载体的EcoRI和NotI识别序列间的DNA片段替换为序列7的第502-2064位所示的DNA片段得到的重组载体。所述pET32a-TEV-Tcca-W429A含有序列7所示的TEV-Tcca-W429A融合基因,能表达序列8所示的TEV-Tcca-W429A融合蛋白。B3) The recombinant vector can specifically be pET32a-TEV-Tcca-W429A. The pET32a-TEV-Tcca-W429A is a recombinant vector obtained by replacing the DNA fragment between the EcoRI and NotI recognition sequences of the pET32a(+) vector with the DNA fragment shown at positions 502-2064 of Sequence 7. The pET32a-TEV-Tcca-W429A contains the TEV-Tcca-W429A fusion gene shown in sequence 7 and can express the TEV-Tcca-W429A fusion protein shown in sequence 8.
上述生物材料中,所述微生物可为酵母、细菌、藻或真菌。其中,细菌可为大肠杆菌,如大肠杆菌BL21(DE3)trxB。In the above biological material, the microorganism may be yeast, bacteria, algae or fungi. The bacterium may be Escherichia coli, such as Escherichia coli BL21(DE3)trxB.
本发明还提供了一种水解PET的方法,所述方法包括:利用Tcca-W429A处理PET实现PET的水解。The invention also provides a method for hydrolyzing PET, which method includes: treating PET with Tcca-W429A to achieve hydrolysis of PET.
上述方法中,所述处理可在30℃下进行。In the above method, the treatment can be performed at 30°C.
上述方法中,利用Tcca-W429A处理PET可在50mM PBS,pH8.0的缓冲液中进行。In the above method, the treatment of PET with Tcca-W429A can be carried out in 50mM PBS, pH 8.0 buffer.
本发明还提供了一种制备MHET的方法,所述方法包括:利用Tcca-W429A水解PET,得到MHET。The invention also provides a method for preparing MHET, which method includes: hydrolyzing PET using Tcca-W429A to obtain MHET.
上述方法中,所述处理可在30℃下进行。In the above method, the treatment can be performed at 30°C.
上述方法中,利用Tcca-W429A水解PET可在50mM PBS,pH8.0的缓冲液中进行。In the above method, the hydrolysis of PET using Tcca-W429A can be carried out in 50mM PBS, pH 8.0 buffer.
Tcca-W429A的下述任一应用,也属于本发明的保护范围:Any of the following applications of Tcca-W429A also falls within the protection scope of the present invention:
1)作为PET水解酶或BHET水解酶;1) As PET hydrolase or BHET hydrolase;
2)催化PET水解;2) Catalyze PET hydrolysis;
3)降解PET;3) Degradation of PET;
4)催化PET水解为MHET和/或TPA;4) Catalyze the hydrolysis of PET into MHET and/or TPA;
5)制备PET降解剂;5) Prepare PET degradation agent;
6)制备催化PET水解产品;6) Preparation of catalytic PET hydrolysis products;
7)制备降解PET产品;7) Preparation of degraded PET products;
8)制备催化PET水解为MHET和/或TPA产品。8) Preparation of catalytic PET hydrolysis into MHET and/or TPA products.
所述生物材料的下述任一应用,也属于本发明的保护范围:Any of the following applications of the biological material also falls within the protection scope of the present invention:
1)催化PET水解;1) Catalyze PET hydrolysis;
2)降解PET;2) Degradation of PET;
3)催化PET水解为MHET和/或TPA;3) Catalyze the hydrolysis of PET into MHET and/or TPA;
4)制备PET降解剂;4) Prepare PET degradation agent;
5)制备催化PET水解产品;5) Preparation of catalytic PET hydrolysis products;
6)制备降解PET产品;6) Preparation of degraded PET products;
7)制备催化PET水解为MHET和/或TPA产品。7) Preparation of catalytic PET hydrolysis into MHET and/or TPA products.
上文中,PET可为BHET。In the above, PET can be BHET.
本发明利用定点突变技术将原有羧酸酯酶(Tcca)进行突变,得到一种羧酸酯酶突变体,改变了原有羧酸酯酶活性较低的问题,有效提高Tcca降解BHET的活性,提升Tcca的降解效果。BHET(短链PET)在可以解除PET降解中产物抑制的作用,本发明的羧酸酯酶突变体提高了BHET的降解效率,工业应用前景良好。The present invention uses site-directed mutation technology to mutate the original carboxylesterase (Tcca) to obtain a carboxylesterase mutant, which changes the problem of low activity of the original carboxylesterase and effectively improves the activity of Tcca in degrading BHET. , improve the degradation effect of Tcca. BHET (short chain PET) can relieve the product inhibition effect in PET degradation. The carboxylesterase mutant of the present invention improves the degradation efficiency of BHET and has good industrial application prospects.
下面结合具体实施方式对本发明进行进一步的详细描述,给出的实施例仅为了阐明本发明,而不是为了限制本发明的范围。以下提供的实施例可作为本技术领域普通技术人员进行进一步改进的指南,并不以任何方式构成对本发明的限制。The present invention will be described in further detail below in conjunction with specific embodiments. The examples given are only for illustrating the present invention and are not intended to limit the scope of the present invention. The examples provided below can serve as a guide for those of ordinary skill in the art to make further improvements, and do not limit the present invention in any way.
附图说明Description of the drawings
图1为羧酸酯酶及其突变体蛋白的活性分析。WT表示野生型羧酸酯酶,W429A表示突变体。Figure 1 shows the activity analysis of carboxylesterase and its mutant proteins. WT indicates wild-type carboxylesterase and W429A indicates the mutant.
具体实施方式Detailed ways
下述实施例中的实验方法,如无特殊说明,均为常规方法,按照本领域内的文献所描述的技术或条件或者按照产品说明书进行。下述实施例中所用的材料、试剂、仪器等,如无特殊说明,均可从商业途径得到。以下实施例中的定量试验,均设置三次重复实验,结果取平均值。下述实施例中,如无特殊说明,序列表中各核苷酸序列的第1位均为相应DNA/RNA的5′末端核苷酸,末位均为相应DNA/RNA的3′末端核苷酸。The experimental methods in the following examples, unless otherwise specified, are all conventional methods and are carried out in accordance with the techniques or conditions described in literature in the field or in accordance with product instructions. The materials, reagents, instruments, etc. used in the following examples can all be obtained from commercial sources unless otherwise specified. The quantitative experiments in the following examples were repeated three times, and the results were averaged. In the following examples, unless otherwise specified, the first position of each nucleotide sequence in the sequence list is the 5' terminal nucleotide of the corresponding DNA/RNA, and the last position is the 3' terminal core of the corresponding DNA/RNA. glycosides.
双(2-羟乙基)对苯二甲酸酯(BHET):PET的低聚物,sigma,cas:959-26-2。Bis(2-hydroxyethyl)terephthalate (BHET): oligomer of PET, sigma, cas: 959-26-2.
实施例1、羧酸酯酶突变体的制备、表达纯化及活性检测Example 1. Preparation, expression, purification and activity detection of carboxylesterase mutants
为增加羧酸酯酶的工业应用价值,本发明合成了来源于Thermobacilluscomposti的羧酸酯酶的基因,并对其进行了突变,获得了酶活性提高的突变体。In order to increase the industrial application value of carboxylesterase, the present invention synthesizes the carboxylesterase gene derived from Thermobacilluscomposti, mutates it, and obtains a mutant with improved enzyme activity.
一、野生型羧酸酯酶重组质粒和其突变体重组质粒的构建1. Construction of wild-type carboxylesterase recombinant plasmid and its mutant recombinant plasmid
1、野生型羧酸酯酶重组质粒的构建1. Construction of wild-type carboxylesterase recombinant plasmid
野生型羧酸酯酶为来源于Thermobacillus composti的Tcca,野生型Tcca的核苷酸序列为序列表中序列1,其编码的氨基酸序列为序列表中序列2。The wild-type carboxylesterase is Tcca derived from Thermobacillus composti. The nucleotide sequence of wild-type Tcca is sequence 1 in the sequence listing, and its encoded amino acid sequence is sequence 2 in the sequence listing.
合成含有TEV酶切位点的野生型羧酸酯酶基因,并将其插入pET32a(+)载体中EcoRI和NotI酶切位点中,获得重组质粒,记为pET32a-TEV-Tcca;该重组质粒诱导表达后编码的氨基酸序列除了野生型羧酸酯酶的序列外,其N端还有一段载体序列和TEV酶切位点,诱导表达后氨基酸序列如序列6所示,命名为含有野生型羧酸酯酶的融合蛋白(记为TEV-Tcca融合蛋白),其编码基因(记为TEV-Tcca融合基因)为序列表中5所示。The wild-type carboxylesterase gene containing the TEV restriction site was synthesized and inserted into the EcoRI and NotI restriction sites in the pET32a(+) vector to obtain a recombinant plasmid, designated pET32a-TEV-Tcca; this recombinant plasmid In addition to the wild-type carboxylesterase sequence, the amino acid sequence encoded after induced expression also has a vector sequence and a TEV enzyme cleavage site at its N-terminus. The amino acid sequence after induced expression is shown in Sequence 6, which is named as containing wild-type carboxylesterase. The fusion protein of acid esterase (denoted as TEV-Tcca fusion protein), and its encoding gene (denoted as TEV-Tcca fusion gene) is shown in 5 in the sequence list.
含有TEV酶切位点的TEV-Tcca融合基因的核苷酸序列从5′末端起依次由TEV酶切位点(序列5的第502-522位)、无功能氨基酸编码核酸(序列5的第523-537位)和序列表中序列1所示的Tcca基因(序列5的第538-2064位)组成。The nucleotide sequence of the TEV-Tcca fusion gene containing a TEV enzyme cleavage site consists of a TEV enzyme cleavage site (positions 502-522 of Sequence 5) and a non-functional amino acid encoding nucleic acid (positions 5 of Sequence 5) starting from the 5' end. 523-537) and the Tcca gene shown in sequence 1 in the sequence listing (positions 538-2064 of sequence 5).
TEV-Tcca融合蛋白的氨基酸序列从N末端起依次由pET32a载体部分片段(序列6的第1-167位),TEV酶切位点(序列6的第168-174位)、无功能氨基酸(序列6的第175-179位)和序列表中序列2所示的Tcca(序列6的第180-687位)组成。The amino acid sequence of the TEV-Tcca fusion protein consists of the pET32a vector partial fragment (positions 1-167 of sequence 6), TEV restriction site (positions 168-174 of sequence 6), and non-functional amino acids (positions 168-174 of sequence 6) from the N-terminus. 6) and Tcca shown in sequence 2 in the sequence listing (positions 180-687 of sequence 6).
具体的,pET32a-TEV-Tcca为将pET32a(+)载体的EcoRI和NotI识别序列间的DNA片段替换为含有TEV酶切位点的野生型羧酸酯酶基因(序列5的第502-2064位)得到的重组载体,该重组载体含有序列表中序列5所示的TEV-Tcca融合基因,能表达序列表中序列6所示的TEV-Tcca融合蛋白。Specifically, pET32a-TEV-Tcca replaces the DNA fragment between the EcoRI and NotI recognition sequences of the pET32a(+) vector with the wild-type carboxylesterase gene containing the TEV enzyme cleavage site (positions 502-2064 of Sequence 5 ), the recombinant vector contains the TEV-Tcca fusion gene shown in Sequence 5 in the Sequence Listing, and can express the TEV-Tcca fusion protein shown in Sequence 6 in the Sequence Listing.
2、表达羧酸酯酶突变体的重组质粒2. Recombinant plasmid expressing carboxylesterase mutant
羧酸酯酶突变体为将序列2所示的野生型羧酸酯酶按照如下突变得到的蛋白(将所得蛋白记为Tcca-W429A):其氨基酸序列的第429位由野生型羧酸酯酶的色氨酸(tryptophan)突变为丙氨酸(alanine)。羧酸酯酶突变体Tcca-W429A的氨基酸序列为序列4,其编码基因(即Tcca-W429A基因)的核苷酸序列为序列3。The carboxylesterase mutant is a protein obtained by mutating the wild-type carboxylesterase shown in sequence 2 as follows (the resulting protein is recorded as Tcca-W429A): position 429 of its amino acid sequence is modified by the wild-type carboxylesterase Tryptophan is mutated into alanine. The amino acid sequence of carboxylesterase mutant Tcca-W429A is sequence 4, and the nucleotide sequence of its encoding gene (ie, Tcca-W429A gene) is sequence 3.
利用定点突变技术(site-directed mutagenesis),以pET32a-TEV-Tcca质粒为模板,用表1所示的引物进行PCR,得到表达羧酸酯酶突变体的质粒;进而加入限制性内切酶DpnI于37℃下反应以去除原始模板。将纯化后的反应产物转化大肠杆菌感受态细胞中,用抗生素进行初步筛选,进行DNA测序以确定成功突变的基因,得到表达羧酸酯酶突变体的质粒,记为pET32a-TEV-Tcca-W429A。Utilize site-directed mutagenesis, use the pET32a-TEV-Tcca plasmid as a template, and perform PCR with the primers shown in Table 1 to obtain a plasmid expressing the carboxylesterase mutant; then add the restriction endonuclease DpnI React at 37°C to remove original template. The purified reaction product was transformed into E. coli competent cells, and antibiotics were used for preliminary screening. DNA sequencing was performed to determine the successfully mutated genes, and a plasmid expressing the carboxylesterase mutant was obtained, which was designated as pET32a-TEV-Tcca-W429A. .
具体的,pET32a-TEV-Tcca-W429A为将pET32a-TEV-Tcca中的Tcca基因替换为Tcca-W429A基因得到的重组质粒,该重组质粒含有TEV-Tcca-W429A融合基因(该基因为将TEV-Tcca融合基因中的Tcca基因替换为Tcca-W429A基因得到的DNA片段,TEV-Tcca-W429A融合基因的序列为序列7),能表达TEV-Tcca-W429A融合蛋白(该蛋白为将TEV-Tcca融合蛋白中的Tcca蛋白替换为Tcca-W429A蛋白得到的蛋白质,TEV-Tcca-W429A融合蛋白的序列为序列8)。Specifically, pET32a-TEV-Tcca-W429A is a recombinant plasmid obtained by replacing the Tcca gene in pET32a-TEV-Tcca with the Tcca-W429A gene. The recombinant plasmid contains the TEV-Tcca-W429A fusion gene (this gene is the TEV- The Tcca gene in the Tcca fusion gene is replaced with a DNA fragment obtained by the Tcca-W429A gene. The sequence of the TEV-Tcca-W429A fusion gene is sequence 7), which can express the TEV-Tcca-W429A fusion protein (the protein is a fusion of TEV-Tcca The Tcca protein in the protein is replaced with the Tcca-W429A protein. The sequence of the TEV-Tcca-W429A fusion protein is sequence 8).
利用定点突变技术(site-directed mutagenesis),以pET32a-TEV-Tcca质粒为模板,用表1所示的引物进行PCR,得到表达羧酸酯酶突变体的质粒;进而加入限制性内切酶DpnI于37℃下反应以去除原始模板。将纯化后的反应产物转化大肠杆菌感受态细胞中,用抗生素进行初步筛选,进行DNA测序以确定成功突变的基因,得到表达羧酸酯酶突变体的质粒,记为pET32a-TEV-Tcca-F325A。Utilize site-directed mutagenesis, use the pET32a-TEV-Tcca plasmid as a template, and perform PCR with the primers shown in Table 1 to obtain a plasmid expressing the carboxylesterase mutant; then add the restriction endonuclease DpnI React at 37°C to remove original template. The purified reaction product was transformed into Escherichia coli competent cells, and antibiotics were used for preliminary screening. DNA sequencing was performed to determine the successfully mutated genes, and a plasmid expressing the carboxylesterase mutant was obtained, which was designated as pET32a-TEV-Tcca-F325A. .
具体的,pET32a-TEV-Tcca-F325A为将pET32a-TEV-Tcca中的Tcca基因替换为Tcca-F325A基因得到的重组质粒,该重组质粒含有TEV-Tcca-F325A融合基因(该基因为将TEV-Tcca融合基因中的Tcca基因替换为Tcca-F325A基因得到的DNA片段,TEV-Tcca-F325A融合基因的序列为序列9),能表达TEV-Tcca-F325A融合蛋白(该蛋白为将TEV-Tcca融合蛋白中的Tcca蛋白替换为Tcca-F325A蛋白得到的蛋白质)。Specifically, pET32a-TEV-Tcca-F325A is a recombinant plasmid obtained by replacing the Tcca gene in pET32a-TEV-Tcca with the Tcca-F325A gene. The recombinant plasmid contains the TEV-Tcca-F325A fusion gene (this gene is the TEV- The Tcca gene in the Tcca fusion gene is replaced with a DNA fragment obtained by the Tcca-F325A gene. The sequence of the TEV-Tcca-F325A fusion gene is sequence 9), which can express the TEV-Tcca-F325A fusion protein (the protein is a fusion of TEV-Tcca Protein obtained by replacing the Tcca protein in the protein with Tcca-F325A protein).
其中,TEV-Tcca-F325A基因的序列为序列9,TEV-Tcca-F325A蛋白的氨基酸序列为序列10。Among them, the sequence of TEV-Tcca-F325A gene is sequence 9, and the amino acid sequence of TEV-Tcca-F325A protein is sequence 10.
表1、定点突变引物Table 1. Site-directed mutagenesis primers
上述表中,W429A指序列2中的第429个氨基酸由色氨酸突变为丙氨酸,F325A指序列2中的第325个氨基酸由苯丙氨酸突变为丙氨酸。In the above table, W429A refers to the mutation of the 429th amino acid in sequence 2 from tryptophan to alanine, and F325A refers to the mutation of the 325th amino acid in sequence 2 from phenylalanine to alanine.
二、羧酸酯酶突变体和野生型羧酸酯酶的制备2. Preparation of carboxylesterase mutants and wild-type carboxylesterase
1、野生型羧酸酯酶及突变体的表达纯化1. Expression and purification of wild-type carboxylesterase and mutants
将上述一制备的表达野生型羧酸酯酶的重组质粒pET32a-TEV-Tcca和表达羧酸酯酶突变体的重组质粒pET32a-TEV-Tcca-W429A、pET32a-TEV-Tcca-F325A分别转化入大肠杆菌BL21(DE3)trxB感受态细胞中,在含有100μg/ml Ampicillin的LB培养皿中筛选菌株。把筛选出的菌株接种到5ml LB内培养,再放大菌量至200ml LB培养,最终放大到6L的LB培养基中培养(37℃,220rpm)。在OD值到达0.6至0.8时,将培养物冷却至16℃,并在16℃和220rpm下,加入终浓度0.4mM的IPTG诱导酶蛋白的大量表达。经过18小时的蛋白质诱导表达后,将菌液以6000rpm转速离心15分钟将细胞收集下来。用缓冲液(25mM tris,150mM NaCl,pH7.5)将菌体进行重悬,利用超声波细胞破碎机(sonicator)破菌,再以16000rpm转速在4℃下离心60分钟,收集上清液用以准备下一步的纯化。The recombinant plasmids pET32a-TEV-Tcca expressing wild-type carboxylesterase and the recombinant plasmids pET32a-TEV-Tcca-W429A and pET32a-TEV-Tcca-F325A expressing carboxylesterase mutants prepared above were transformed into the large intestine respectively. Bacillus BL21(DE3)trxB competent cells, and strains were screened in LB culture dishes containing 100 μg/ml Ampicillin. Inoculate the selected strains into 5 ml LB for culture, then amplify the bacterial volume to 200 ml LB for culture, and finally amplify it into 6L LB medium for culture (37°C, 220 rpm). When the OD value reaches 0.6 to 0.8, the culture is cooled to 16°C, and IPTG at a final concentration of 0.4mM is added to induce large expression of the enzyme protein at 16°C and 220 rpm. After 18 hours of protein induction, the bacterial solution was centrifuged at 6000 rpm for 15 minutes to collect the cells. Resuspend the bacteria in buffer (25mM tris, 150mM NaCl, pH 7.5), disrupt the bacteria using an ultrasonic cell disrupter (sonicator), and then centrifuge at 16,000 rpm at 4°C for 60 minutes, and collect the supernatant for use. Prepare for the next step of purification.
为了得到高纯度的酶蛋白,用快速蛋白质液相层析仪(fast protein liquidchromatography;FPLC)依次利用镍离子层析柱底物洗脱目的蛋白(buffer A:25mM Tris,150mM NaCl,20mM咪唑,pH7.5;buffer B:25mM Tris,150mM NaCl,250mM咪唑,pH7.5),收集目的蛋白。向收集的目的蛋白中加入200微升TEV蛋白酶进行酶切,目的是切掉载体上的His标签,并同时将目的蛋白透析在5L透析液(25mM tris,150mM NaCl,pH7.5)中,更换一下透析液,4℃透析过夜。酶切过后的目的蛋白再过一次镍柱,收集流穿出的不含His标签的目的蛋白。将两次纯化后的目的蛋白透析在缓冲液(25mM Tris,150mM NaCl,pH 7.5)中,浓缩收集,分别得到Tcca蛋白溶液、Tcca-W429A蛋白溶液、Tcca-F325A蛋白溶液,保存于-80℃,备用。In order to obtain high-purity enzyme protein, fast protein liquid chromatography (FPLC) was used to sequentially elute the target protein using a nickel ion chromatography column substrate (buffer A: 25mM Tris, 150mM NaCl, 20mM imidazole, pH 7 .5; buffer B: 25mM Tris, 150mM NaCl, 250mM imidazole, pH7.5), collect the target protein. Add 200 microliters of TEV protease to the collected target protein for enzymatic digestion in order to cut off the His tag on the carrier. At the same time, the target protein is dialyzed into 5L dialysate (25mM tris, 150mM NaCl, pH7.5) and replaced. Add the dialysate and dialyze overnight at 4°C. The target protein after digestion is passed through the nickel column again, and the target protein that does not contain the His tag that flows through is collected. The target protein after twice purification was dialyzed in buffer (25mM Tris, 150mM NaCl, pH 7.5), concentrated and collected to obtain Tcca protein solution, Tcca-W429A protein solution, and Tcca-F325A protein solution respectively, and stored at -80°C. ,spare.
三、羧酸酯酶突变体和野生型羧酸酯酶的相对活性比较3. Comparison of relative activities between carboxylesterase mutants and wild-type carboxylesterase
为验证野生型羧酸酯酶与其突变体的差异,发明人进一步测定二者对BHET的降解活力。羧酸酯酶的活性测试步骤如下:In order to verify the difference between wild-type carboxylesterase and its mutant, the inventors further measured their BHET degradation activities. The steps for testing carboxylesterase activity are as follows:
每个反应体系的混合物(1mL)处于50mM PBS,pH8.0的缓冲液中,该反应体系含有1mM BHET(先用20%DMSO溶解),0.32μM酶(上述二制备的羧酸酯酶突变体或野生型羧酸酯酶),余量为50mM PBS,pH8.0的缓冲液。将所得反应体系置于摇床30℃、300rpm反应24小时。每个反应均做3次重复。反应后混合物经过12000rpm离心10分钟,取上清反应液通过0.22μm过滤器进行过滤;收集滤液进行高效液相色谱(HPLC,Agilent 1200)产物测定与分析,分析柱为Welch Ultimate XB-C18 column(4.6×250mm,5μm,月旭科技(上海)股份有限公司)。流动相为81%纯水,18%乙腈,1%甲酸,流速0.8ml/min,波长254nm,柱温箱30℃,直接洗脱,20min。The mixture (1 mL) of each reaction system is in 50mM PBS, pH 8.0 buffer. The reaction system contains 1mM BHET (first dissolved in 20% DMSO), 0.32μM enzyme (carboxylesterase mutant prepared above) or wild-type carboxylesterase), and the balance is 50mM PBS, pH 8.0 buffer. The obtained reaction system was placed on a shaker at 30°C and 300 rpm for 24 hours. Each reaction was repeated three times. After the reaction, the mixture was centrifuged at 12,000 rpm for 10 minutes, and the supernatant reaction solution was filtered through a 0.22 μm filter; the filtrate was collected for high-performance liquid chromatography (HPLC, Agilent 1200) product determination and analysis, and the analytical column was Welch Ultimate XB-C18 column ( 4.6×250mm, 5μm, Yuexu Technology (Shanghai) Co., Ltd.). The mobile phase is 81% pure water, 18% acetonitrile, 1% formic acid, flow rate 0.8ml/min, wavelength 254nm, column oven 30°C, direct elution, 20min.
野生型羧酸酯酶和突变体的高效液相色谱(HPLC)检测结果是在保留时间12min左右出峰,对其出峰进行质谱检测分析(负离子,Mass range 50-1000m/z),为MHET。The high-performance liquid chromatography (HPLC) detection results of wild-type carboxylesterase and mutants show that the peaks emerge at a retention time of about 12 minutes. The peaks are analyzed by mass spectrometry (negative ions, Mass range 50-1000m/z), which is MHET. .
通过比较羧酸酯酶或其突变体的水解产物MHET的峰面积,来确定野生型和突变型酶活。Wild-type and mutant enzyme activities were determined by comparing the peak areas of the hydrolysis product MHET of carboxylesterase or its mutants.
活性测定原理如下:HPLC实验中,溶液中化合物的量与峰面积成线性关系,因此可以通过峰面积来计算溶液中化合物的量;本实验中,由产物的峰面积来定义突变体蛋白对底物的催化效果;产物越多,则说明该突变体蛋白具有越好的活性。The principle of activity measurement is as follows: In HPLC experiments, the amount of compounds in the solution has a linear relationship with the peak area, so the amount of compounds in the solution can be calculated by the peak area; in this experiment, the peak area of the product is used to define the response of the mutant protein to the bottom The catalytic effect of the product; the more products, the better the activity of the mutant protein.
以野生型羧酸酯酶的24小时水解产物MHET的峰面积记作100%,羧酸酯酶突变体的水解产物MHET的峰面积与野生型羧酸酯酶的水解产物MHET的峰面积相比,记作相对酶活。Taking the peak area of the 24-hour hydrolysis product MHET of the wild-type carboxylesterase as 100%, the peak area of the hydrolysis product MHET of the carboxylesterase mutant is compared with the peak area of the hydrolysis product MHET of the wild-type carboxylesterase. , recorded as relative enzyme activity.
检测结果表明,本发明的羧酸酯酶及其突变体均可将BHET水解为MHET,但Tcca-W429A突变体对BHET降解活性高于野生型蛋白,产生的产物MHET是野生型的1.6倍,Tcca-F325A对BHET降解活性远低于野生型蛋白,如图1所示。表明,突变体Tcca-W429A具有很好的应用价值。The test results show that both the carboxylesterase and its mutants of the present invention can hydrolyze BHET into MHET, but the Tcca-W429A mutant has a higher BHET degradation activity than the wild-type protein, and the product MHET produced is 1.6 times that of the wild-type. The BHET degradation activity of Tcca-F325A is much lower than that of the wild-type protein, as shown in Figure 1. It shows that the mutant Tcca-W429A has good application value.
以上对本发明进行了详述。对于本领域技术人员来说,在不脱离本发明的宗旨和范围,以及无需进行不必要的实验情况下,可在等同参数、浓度和条件下,在较宽范围内实施本发明。虽然本发明给出了特殊的实施例,应该理解为,可以对本发明作进一步的改进。总之,按本发明的原理,本申请欲包括任何变更、用途或对本发明的改进,包括脱离了本申请中已公开范围,而用本领域已知的常规技术进行的改变。按以下附带的权利要求的范围,可以进行一些基本特征的应用。The present invention has been described in detail above. For those skilled in the art, the present invention can be implemented in a wider range under equivalent parameters, concentrations and conditions without departing from the spirit and scope of the invention and without performing unnecessary experiments. Although specific embodiments of the present invention have been shown, it should be understood that further modifications can be made to the invention. In short, based on the principles of the present invention, this application is intended to include any changes, uses, or improvements to the present invention, including changes that depart from the scope disclosed in this application and are made using conventional techniques known in the art. Some essential features may be applied within the scope of the appended claims below.
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