CN117535283B - Kit for extracting blood genome DNA by magnetic bead method and application thereof - Google Patents
Kit for extracting blood genome DNA by magnetic bead method and application thereof Download PDFInfo
- Publication number
- CN117535283B CN117535283B CN202410024549.8A CN202410024549A CN117535283B CN 117535283 B CN117535283 B CN 117535283B CN 202410024549 A CN202410024549 A CN 202410024549A CN 117535283 B CN117535283 B CN 117535283B
- Authority
- CN
- China
- Prior art keywords
- kit
- edta
- hcl
- tris
- following components
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Active
Links
- 239000011324 bead Substances 0.000 title claims abstract description 53
- 238000000034 method Methods 0.000 title claims abstract description 43
- 210000004369 blood Anatomy 0.000 title claims abstract description 30
- 239000008280 blood Substances 0.000 title claims abstract description 30
- 238000005406 washing Methods 0.000 claims abstract description 52
- -1 tetradecyl sulfobetaine Chemical compound 0.000 claims abstract description 24
- 229940117986 sulfobetaine Drugs 0.000 claims abstract description 23
- UMCMPZBLKLEWAF-BCTGSCMUSA-N 3-[(3-cholamidopropyl)dimethylammonio]propane-1-sulfonate Chemical compound C([C@H]1C[C@H]2O)[C@H](O)CC[C@]1(C)[C@@H]1[C@@H]2[C@@H]2CC[C@H]([C@@H](CCC(=O)NCCC[N+](C)(C)CCCS([O-])(=O)=O)C)[C@@]2(C)[C@@H](O)C1 UMCMPZBLKLEWAF-BCTGSCMUSA-N 0.000 claims abstract description 22
- 108010077895 Sarcosine Proteins 0.000 claims abstract description 22
- 229940048098 sodium sarcosinate Drugs 0.000 claims abstract description 22
- ZUFONQSOSYEWCN-UHFFFAOYSA-M sodium;2-(methylamino)acetate Chemical compound [Na+].CNCC([O-])=O ZUFONQSOSYEWCN-UHFFFAOYSA-M 0.000 claims abstract description 22
- QKNYBSVHEMOAJP-UHFFFAOYSA-N 2-amino-2-(hydroxymethyl)propane-1,3-diol;hydron;chloride Chemical compound Cl.OCC(N)(CO)CO QKNYBSVHEMOAJP-UHFFFAOYSA-N 0.000 claims description 49
- KCXVZYZYPLLWCC-UHFFFAOYSA-N EDTA Chemical compound OC(=O)CN(CC(O)=O)CCN(CC(O)=O)CC(O)=O KCXVZYZYPLLWCC-UHFFFAOYSA-N 0.000 claims description 49
- FVAUCKIRQBBSSJ-UHFFFAOYSA-M sodium iodide Chemical compound [Na+].[I-] FVAUCKIRQBBSSJ-UHFFFAOYSA-M 0.000 claims description 45
- 239000006166 lysate Substances 0.000 claims description 43
- KFZMGEQAYNKOFK-UHFFFAOYSA-N Isopropanol Chemical compound CC(C)O KFZMGEQAYNKOFK-UHFFFAOYSA-N 0.000 claims description 35
- LFQSCWFLJHTTHZ-UHFFFAOYSA-N Ethanol Chemical compound CCO LFQSCWFLJHTTHZ-UHFFFAOYSA-N 0.000 claims description 32
- 239000007788 liquid Substances 0.000 claims description 29
- 229960000789 guanidine hydrochloride Drugs 0.000 claims description 27
- PJJJBBJSCAKJQF-UHFFFAOYSA-N guanidinium chloride Chemical compound [Cl-].NC(N)=[NH2+] PJJJBBJSCAKJQF-UHFFFAOYSA-N 0.000 claims description 27
- 239000003480 eluent Substances 0.000 claims description 23
- FAPWRFPIFSIZLT-UHFFFAOYSA-M Sodium chloride Chemical compound [Na+].[Cl-] FAPWRFPIFSIZLT-UHFFFAOYSA-M 0.000 claims description 22
- 229920002594 Polyethylene Glycol 8000 Polymers 0.000 claims description 21
- 235000009518 sodium iodide Nutrition 0.000 claims description 15
- 239000013504 Triton X-100 Substances 0.000 claims description 13
- 229920004890 Triton X-100 Polymers 0.000 claims description 13
- 239000011780 sodium chloride Substances 0.000 claims description 11
- 239000000377 silicon dioxide Substances 0.000 claims description 2
- VYPSYNLAJGMNEJ-UHFFFAOYSA-N silicon dioxide Inorganic materials O=[Si]=O VYPSYNLAJGMNEJ-UHFFFAOYSA-N 0.000 claims description 2
- 102000039446 nucleic acids Human genes 0.000 abstract description 35
- 108020004707 nucleic acids Proteins 0.000 abstract description 35
- 150000007523 nucleic acids Chemical class 0.000 abstract description 35
- 238000000605 extraction Methods 0.000 abstract description 18
- 239000000126 substance Substances 0.000 abstract description 6
- 239000012535 impurity Substances 0.000 abstract description 4
- 230000002452 interceptive effect Effects 0.000 abstract description 3
- 239000004094 surface-active agent Substances 0.000 abstract description 3
- 230000006037 cell lysis Effects 0.000 abstract 1
- 239000000243 solution Substances 0.000 description 41
- 230000000052 comparative effect Effects 0.000 description 30
- 239000003153 chemical reaction reagent Substances 0.000 description 10
- 108090000623 proteins and genes Proteins 0.000 description 9
- 102000004169 proteins and genes Human genes 0.000 description 9
- 239000000203 mixture Substances 0.000 description 6
- 108010067770 Endopeptidase K Proteins 0.000 description 5
- 238000004140 cleaning Methods 0.000 description 5
- 230000000694 effects Effects 0.000 description 5
- 150000002357 guanidines Chemical class 0.000 description 5
- ISWSIDIOOBJBQZ-UHFFFAOYSA-N Phenol Chemical compound OC1=CC=CC=C1 ISWSIDIOOBJBQZ-UHFFFAOYSA-N 0.000 description 3
- 210000000265 leukocyte Anatomy 0.000 description 3
- 238000004806 packaging method and process Methods 0.000 description 3
- 229910052710 silicon Inorganic materials 0.000 description 3
- 239000010703 silicon Substances 0.000 description 3
- 230000002195 synergetic effect Effects 0.000 description 3
- 238000012360 testing method Methods 0.000 description 3
- HEDRZPFGACZZDS-UHFFFAOYSA-N Chloroform Chemical compound ClC(Cl)Cl HEDRZPFGACZZDS-UHFFFAOYSA-N 0.000 description 2
- 239000008118 PEG 6000 Substances 0.000 description 2
- 229920002584 Polyethylene Glycol 6000 Polymers 0.000 description 2
- 229920001213 Polysorbate 20 Polymers 0.000 description 2
- 150000001720 carbohydrates Chemical class 0.000 description 2
- 235000014633 carbohydrates Nutrition 0.000 description 2
- 238000005336 cracking Methods 0.000 description 2
- 230000009089 cytolysis Effects 0.000 description 2
- 238000001514 detection method Methods 0.000 description 2
- MTHSVFCYNBDYFN-UHFFFAOYSA-N diethylene glycol Chemical group OCCOCCO MTHSVFCYNBDYFN-UHFFFAOYSA-N 0.000 description 2
- 238000002474 experimental method Methods 0.000 description 2
- IZWSFJTYBVKZNK-UHFFFAOYSA-N lauryl sulfobetaine Chemical compound CCCCCCCCCCCC[N+](C)(C)CCCS([O-])(=O)=O IZWSFJTYBVKZNK-UHFFFAOYSA-N 0.000 description 2
- 229910021645 metal ion Inorganic materials 0.000 description 2
- 239000000256 polyoxyethylene sorbitan monolaurate Substances 0.000 description 2
- 235000010486 polyoxyethylene sorbitan monolaurate Nutrition 0.000 description 2
- 231100000331 toxic Toxicity 0.000 description 2
- 230000002588 toxic effect Effects 0.000 description 2
- 239000002888 zwitterionic surfactant Substances 0.000 description 2
- OCKGFTQIICXDQW-ZEQRLZLVSA-N 5-[(1r)-1-hydroxy-2-[4-[(2r)-2-hydroxy-2-(4-methyl-1-oxo-3h-2-benzofuran-5-yl)ethyl]piperazin-1-yl]ethyl]-4-methyl-3h-2-benzofuran-1-one Chemical compound C1=C2C(=O)OCC2=C(C)C([C@@H](O)CN2CCN(CC2)C[C@H](O)C2=CC=C3C(=O)OCC3=C2C)=C1 OCKGFTQIICXDQW-ZEQRLZLVSA-N 0.000 description 1
- LZZYPRNAOMGNLH-UHFFFAOYSA-M Cetrimonium bromide Chemical compound [Br-].CCCCCCCCCCCCCCCC[N+](C)(C)C LZZYPRNAOMGNLH-UHFFFAOYSA-M 0.000 description 1
- 108090000790 Enzymes Proteins 0.000 description 1
- 102000004190 Enzymes Human genes 0.000 description 1
- 229920002560 Polyethylene Glycol 3000 Polymers 0.000 description 1
- 230000003044 adaptive effect Effects 0.000 description 1
- 239000003513 alkali Substances 0.000 description 1
- 230000003321 amplification Effects 0.000 description 1
- 230000009286 beneficial effect Effects 0.000 description 1
- 210000001772 blood platelet Anatomy 0.000 description 1
- 238000009835 boiling Methods 0.000 description 1
- 239000007853 buffer solution Substances 0.000 description 1
- 210000004027 cell Anatomy 0.000 description 1
- 210000002390 cell membrane structure Anatomy 0.000 description 1
- 238000004587 chromatography analysis Methods 0.000 description 1
- 238000003776 cleavage reaction Methods 0.000 description 1
- 230000007547 defect Effects 0.000 description 1
- 239000003398 denaturant Substances 0.000 description 1
- 239000003792 electrolyte Substances 0.000 description 1
- 238000010828 elution Methods 0.000 description 1
- 239000003344 environmental pollutant Substances 0.000 description 1
- 229940125532 enzyme inhibitor Drugs 0.000 description 1
- 239000002532 enzyme inhibitor Substances 0.000 description 1
- 210000003743 erythrocyte Anatomy 0.000 description 1
- 230000002349 favourable effect Effects 0.000 description 1
- 230000001771 impaired effect Effects 0.000 description 1
- 230000002779 inactivation Effects 0.000 description 1
- 230000005764 inhibitory process Effects 0.000 description 1
- 150000002632 lipids Chemical class 0.000 description 1
- 239000000463 material Substances 0.000 description 1
- 238000012986 modification Methods 0.000 description 1
- 230000004048 modification Effects 0.000 description 1
- 239000002736 nonionic surfactant Substances 0.000 description 1
- 238000003199 nucleic acid amplification method Methods 0.000 description 1
- 238000001821 nucleic acid purification Methods 0.000 description 1
- 238000002205 phenol-chloroform extraction Methods 0.000 description 1
- 210000002381 plasma Anatomy 0.000 description 1
- 231100000719 pollutant Toxicity 0.000 description 1
- 239000002244 precipitate Substances 0.000 description 1
- 238000001556 precipitation Methods 0.000 description 1
- 238000012545 processing Methods 0.000 description 1
- 239000000047 product Substances 0.000 description 1
- 238000011160 research Methods 0.000 description 1
- 230000007017 scission Effects 0.000 description 1
- 238000002798 spectrophotometry method Methods 0.000 description 1
- 238000006467 substitution reaction Methods 0.000 description 1
- 239000000725 suspension Substances 0.000 description 1
- 210000001519 tissue Anatomy 0.000 description 1
Abstract
The invention discloses a kit for extracting blood genome DNA by a magnetic bead method and application thereof. The invention uses sodium sarcosinate and CHAPS to carry out cell lysis by matching with other components, and has low cost and higher efficiency. In addition, tetradecyl sulfobetaine is used as a surfactant to be matched with other components for washing, so that the content of interfering substances is reduced better, and the purity of nucleic acid is improved. The kit can fully extract DNA in a blood sample and remove impurities, and effectively improves the yield and purity of the DNA. The extraction kit is matched with a full-automatic nucleic acid extractor by a magnetic bead method, is simple, convenient and safe to operate, and can meet the extraction requirements of a large number of samples.
Description
Technical Field
The invention relates to the technical field of nucleic acid extraction, in particular to a kit for extracting blood genome DNA by a magnetic bead method and application thereof.
Background
Blood is a common clinical test sample, and extraction of genomic DNA from blood samples is the basis for clinical tests and biomedical research. However, the components of blood samples are complex, including plasma, erythrocytes, leukocytes and platelets, with most of the genomic DNA present in leukocytes, whereas the volume fraction of leukocytes containing genomic DNA is only around 1%, with a low nucleic acid content. Therefore, it is important to obtain a stable high concentration and high purity genomic DNA from a blood sample rapidly.
Traditional nucleic acid extraction methods, such as phenol-chloroform extraction, boiling cleavage, CTAB, chromatography, etc., generally have the disadvantages of complex operation steps, long time consumption, incapability of automatic operation, low extraction efficiency, and the like, and some of the methods even require the use of toxic organic reagents, which have great influence on the environment and the health of operators. Compared with the traditional nucleic acid purification method, the magnetic bead method nucleic acid extraction technology is attracting attention as a simple, rapid, reliable and automatable nucleic acid extraction method.
The Chinese patent No. 116769770A discloses a kit and a method for extracting genomic DNA of blood tissue cells, wherein under the combined action of a lysate, a washing solution, an eluent, a magnetic bead suspension and a proteinase K solution, the total amount of the extracted DNA is about 10 mug, the A260/A280 is about 1.80, the A260/A230 is above 2.0, and the concentration and the purity are better. However, this experimental method requires manual operation, is not suitable for high throughput processing of large-scale samples, and contains proteinase K in the kit, which requires low-temperature transportation, thus not only increasing the cost, but also leading to enzyme inactivation if improperly preserved, and finally greatly compromising the extraction effect.
Chinese patent No. 116334073A discloses a blood alcohol-free extraction kit based on a magnetic bead method and a use method, wherein the method can be adapted to a full-automatic nucleic acid extractor, and a rinsing liquid adopts an alcohol-free formula, so that the safety performance of an experiment is improved. However, the kit also uses proteinase K, and the extracted nucleic acid A260/A230 is about 1.70 and does not reach the optimal range of 2.0-2.3, one of A260/A280 even exceeds 2.0, and RNA pollution exists, so that the purity of DNA extracted by the kit still needs to be further improved.
Disclosure of Invention
The invention aims to solve the technical problems and defects in the prior art and provides a kit for extracting blood genome DNA by a magnetic bead method and application thereof.
The first object of the present invention is to provide a lysate for extracting blood genomic DNA by a magnetic bead method.
The second object of the invention is to provide the application of the lysate in preparing a kit for extracting blood genome DNA by a magnetic bead method.
The third object of the invention is to provide a kit for extracting blood genome DNA by a magnetic bead method.
In order to achieve the above object, the present invention is realized by the following means:
the invention provides a kit for extracting blood genome DNA by a magnetic bead method. The kit consists of a lysate, magnetic beads, a washing solution I, a washing solution II and an eluent, wherein the lysate comprises the following components: guanidine hydrochloride, PEG8000, sodium iodide, tris-HCl, EDTA, CHAPS, sodium sarcosinate; the magnetic beads are silicon hydroxyl magnetic beads; the washing liquid I comprises the following components: guanidine hydrochloride, sodium chloride, tris-HCl, EDTA, tetradecyl sulfobetaine, triton X-100, isopropanol; the washing liquid II comprises the following components: ethanol, tris-HCl, EDTA; the eluent comprises the following components: tris-HCl, EDTA.
In the kit, the protein is destroyed by the lysate without adding proteinase K, but the protein with high efficiency and nucleic acid connection is destroyed by the synergistic effect of the protein strong denaturant (guanidine hydrochloride) and the surfactant (sodium sarcosinate, CHAPS) so that the nucleic acid is fully released. Simultaneously, sodium iodide can also denature protein, so that the protein is denatured and precipitated, and the nucleic acid can be free from protein entanglement. After the blood sample is cracked, the enzyme inhibitor EDTA can be complexed with metal ions, so that the influence of the metal ions on nucleic acid is avoided; the Tris-HCl buffer solution can provide a more proper cracking environment, the PEG8000 is favorable for the precipitation and enrichment of nucleic acid in the cracking solution, and the PEG8000 is matched with magnetic beads, so that the selectivity of adsorbing nucleic acid is improved, the impurities adsorbed by the magnetic beads are reduced, and the extraction rate and purity of the nucleic acid are improved.
The cleaning solution I is added with a zwitterionic surfactant (tetradecyl sulfobetaine) which has excellent cleaning property, stability, alkali resistance and electrolyte resistance; triton X-100 is a nonionic surfactant and mainly used for dissolving lipid on the surface of a sample so as to enable the sample to be cracked more rapidly and fully; the effect of isopropanol is mainly to precipitate or precipitate DNA. The substances such as guanidine hydrochloride, triton X-100, tetradecyl sulfobetaine, isopropanol and the like are matched for use, so that the content of interfering substances such as protein, guanidine salt and the like can be better reduced, and the purity of nucleic acid can be improved.
In the washing solution II, the ethanol is not cleaned if the ethanol is added too little, so that impurities are generated, and if the ethanol is added too much, the ethanol is not volatilized thoroughly, so that a certain inhibition effect is generated on the subsequent amplification. The 70% ethanol solution, tris-HCl and EDTA can be used together to clean guanidine salt and other impurities and maintain the stability of nucleic acid.
Accordingly, the present invention claims the following:
a lysate for extracting blood genomic DNA by a magnetic bead method, the lysate comprising the following components: 3 to 7 percent M guanidine hydrochloride, 4 to 10 percent PEG8000 (w/v), 0.3 to 0.7 percent M sodium iodide, 50 to 100 mM Tris-HCl, 50 to 80 mM EDTA, 5 to 10 percent CHAPS (w/v), 0.5 to 2 percent sodium sarcosinate (w/v) and pH 7.0 to 9.0.
Preferably, the lysate contains the following components: 4-6-M guanidine hydrochloride, 5-8% PEG8000 (w/v), 0.4-0.6-M sodium iodide, 70-90 mM Tris-HCl, 50-70 mM EDTA, 5-10% CHAPS (w/v), 0.5-2% sodium sarcosinate (w/v), pH 7.5-8.5.
More preferably, the lysate contains the following components: 6M guanidine hydrochloride, 8% PEG8000 (w/v), 0.6M sodium iodide, 80 mM Tris-HCl, 60 mM EDTA, 10% CHAPS (w/v), 2% sodium sarcosinate (w/v), pH 8.2.
The application of any of the above lysate in preparing a kit for extracting blood genomic DNA by a magnetic bead method.
A kit for extracting blood genome DNA by a magnetic bead method, wherein the kit contains any one of the lysate.
Preferably, the kit further comprises magnetic beads.
More preferably, the magnetic beads are silica hydroxyl magnetic beads.
Preferably, the kit also contains a washing liquid I;
the washing liquid I contains the following components: 1 to 3. 3M guanidine hydrochloride, 0.5 to 1.5M sodium chloride, 30 to 50 mM Tris-HCl, 10 to 30 mM EDTA, 5 to 7% tetradecyl sulfobetaine (w/v), 1 to 3% Triton X-100 (w/v), 15 to 25% isopropyl alcohol solution (v/v), and pH 7.5 to 8.0.
More preferably, the washing liquid i contains the following components: 2M guanidine hydrochloride, 1M sodium chloride, 40 mM Tris-HCl, 20 mM EDTA, 6% tetradecyl sulfobetaine (w/v), 2% Triton X-100 (w/v), 20% isopropyl alcohol solution (v/v), pH 7.8.
Preferably, the kit also contains a washing liquid II;
the washing liquid II comprises the following components: 70-75% ethanol solution (v/v), 55-65 mM Tris-HCl, 5-15 mM EDTA.
More preferably, the washing liquid II contains the following components: 70% ethanol (v/v), 60 mM Tris-HCl, 10 mM EDTA.
Preferably, the kit further comprises an eluent;
the eluent contains the following components: 5-15 mM Tris-HCl, 0.5-1.5 mM EDTA,pH 7.5-8.5.
More preferably, the eluent contains the following components: 10 mM Tris-HCl, 1 mM EDTA, pH 8.0.
Compared with the prior art, the invention has the following beneficial effects:
the invention discloses a kit for extracting blood genome DNA by a magnetic bead method and application thereof. The kit consists of a lysate, magnetic beads, a washing solution I, a washing solution II and an eluent, wherein the lysate comprises the following components: guanidine hydrochloride, PEG8000, sodium iodide, tris-HCl, EDTA, CHAPS, sodium sarcosinate; the magnetic beads are silicon hydroxyl magnetic beads; the washing liquid I comprises the following components: guanidine hydrochloride, sodium chloride, tris-HCl, EDTA, tetradecyl sulfobetaine, triton X-100, isopropanol; the washing liquid II comprises the following components: ethanol, tris-HCl, EDTA; the eluent comprises the following components: tris-HCl, EDTA.
Compared with the existing products, the kit provided by the invention has at least the following advantages:
(1) The kit does not use toxic reagents such as chloroform, phenol and the like, adopts a pre-packaged reagent plate, is adaptive to a full-automatic nucleic acid extractor, can meet the high-throughput treatment of a large number of samples, and reduces personnel operation steps, thereby greatly reducing the harm to the environment and operators.
(2) The sodium sarcosinate and CHAPS are matched with other components of the invention in the lysate, so that the cell membrane structure can be damaged more efficiently, the nucleic acid can be released more efficiently and rapidly, the lysis efficiency is increased, the extraction amount of the nucleic acid is increased, the A260/A230 value of the nucleic acid is increased, and the nucleic acid is kept in a good purity range. In addition, proteinase K is not needed to be additionally used, so that the experimental cost is effectively reduced, and the experimental operation efficiency is improved.
(3) The tetradecyl sulfobetaine is a zwitterionic surfactant, has excellent cleaning performance, and can better reduce the content of interfering substances and improve the purity of nucleic acid by matching with other components of the invention in the cleaning solution.
Detailed Description
The present invention is further illustrated below with reference to specific examples, which are not intended to limit the invention in any way. Unless specifically stated otherwise, the reagents, methods and apparatus employed in the present invention are those conventional in the art.
Reagents and materials used in the following examples are commercially available unless otherwise specified.
The magnetic beads used in the examples are GNT-201 silicon hydroxyl magnetic beads of Roche Jien biotechnology Co., ltd, and the apparatus used for extracting nucleic acid is Kaplan full-automatic nucleic acid extractor HBNP-4801A.
Example 1A kit for extracting genomic DNA from blood by magnetic bead method
1. Composition of components
The kit comprises a lysate, magnetic beads, a washing solution I, a washing solution II and an eluent.
The lysate comprises the following components: 6M guanidine hydrochloride, 8% PEG8000 (w/v), 0.6M sodium iodide, 80 mM Tris-HCl, 60 mM EDTA, 10% CHAPS (w/v), 2% sodium sarcosinate (w/v), pH 8.2.
The concentration of GNT-201 silica-hydroxyl magnetic beads was 2 mg/mL.
The washing liquid I comprises the following components: 2M guanidine hydrochloride, 1M sodium chloride, 40 mM Tris-HCl, 20 mM EDTA, 6% tetradecyl sulfobetaine (w/v), 2% Triton X-100 (w/v), 20% isopropyl alcohol solution (v/v), pH 7.8.
The washing liquid II comprises the following components: 70% ethanol (v/v), 60 mM Tris-HCl, 10 mM EDTA.
The eluent comprises the following components: 10 mM Tris-HCl, 1 mM EDTA, pH 8.0.
2. Application method
1. And (3) sub-packaging each component in the kit into a pre-packaging reagent plate of a 96-well plate, wherein the 1 st column and the 7 th column of the pre-packaging reagent plate are internally provided with a lysate, the 2 nd column and the 8 th column of the deep-hole plates are internally provided with a washing liquid I, the 3 rd column and the 9 th column of the deep-hole plates are internally provided with a washing liquid II, the 4 th column and the 11 th column of the deep-hole plates are internally provided with magnetic bead solutions, and the 6 th column and the 12 th column of the deep-hole plates are internally provided with eluent, and the elution is specifically shown in table 1.
Table 1 pre-packed reagent plate
2. 300. Mu.L of blood sample was added to each of columns 1 and 7.
3. Opening a Kaipu full-automatic nucleic acid extractor HBNP-4801A instrument, putting a pre-packed reagent plate added with a sample into the extractor, and then inserting a magnetic rod sleeve.
4. The corresponding nucleic acid extraction program was selected and the extraction program was run, as shown in tables 2 and 3, with both extraction programs running simultaneously.
Table 2 extraction procedure 1
TABLE 3 extraction procedure 2
5. After the automatic procedure is finished, the pre-packaged reagent plate and the magnetic sleeve are taken out, and the nucleic acid solution obtained by extraction in the 6 th column and the 12 th column is taken out for further detection or stored at-20+/-5 ℃.
6. A2 mu L nucleic acid solution is adopted to carry out fluorescence spectrophotometry detection by using Nanodrop 2000 to obtain the ratio of A260/A280 and A260/A230, the ratio of A260/A280 is less than or equal to 1.8 and less than or equal to 2.0 of a pure DNA sample, if the ratio is less than 1.8, the influence of protein or phenolic substances exists, the ratio of A260/A230 is more than 2.0, and if the ratio is less than 2.0, the existence of pollutants such as carbohydrate, guanidine salt and the like in the sample is indicated.
Example 2A kit for extracting genomic DNA from blood by magnetic bead method
1. Composition of components
The kit comprises a lysate, magnetic beads, a washing solution I, a washing solution II and an eluent.
The lysate comprises the following components: 6M guanidine hydrochloride, 8% PEG8000 (w/v), 0.6M sodium iodide, 80 mM Tris-HCl, 60 mM EDTA, 10% CHAPS (w/v), 0.5% sodium sarcosinate (w/v), pH 8.2.
The concentration of GNT-201 silica-hydroxyl magnetic beads was 2 mg/mL.
The washing liquid I comprises the following components: 2M guanidine hydrochloride, 1M sodium chloride, 40 mM Tris-HCl, 20 mM EDTA, 6% tetradecyl sulfobetaine (w/v), 2% Triton X-100 (w/v), 20% isopropyl alcohol solution (v/v), pH 7.8.
The washing liquid II comprises the following components: 70% ethanol (v/v), 60 mM Tris-HCl, 10 mM EDTA.
The eluent comprises the following components: 10 mM Tris-HCl, 1 mM EDTA, pH 8.0.
2. Application method
The use was made according to the method of use of example 1.
Example 3A kit for extracting genomic DNA from blood by magnetic bead method
1. Composition of components
The kit comprises a lysate, magnetic beads, a washing solution I, a washing solution II and an eluent.
The lysate comprises the following components: 6M guanidine hydrochloride, 8% PEG8000 (w/v), 0.6M sodium iodide, 80 mM Tris-HCl, 60 mM EDTA, 5% CHAPS (w/v), 2% sodium sarcosinate (w/v), pH 8.2.
The concentration of GNT-201 silica-hydroxyl magnetic beads was 2 mg/mL.
The washing liquid I comprises the following components: 2M guanidine hydrochloride, 1M sodium chloride, 40 mM Tris-HCl, 20 mM EDTA, 6% tetradecyl sulfobetaine (w/v), 2% Triton X-100 (w/v), 20% isopropyl alcohol solution (v/v), pH 7.8.
The washing liquid II comprises the following components: 70% ethanol (v/v), 60 mM Tris-HCl, 10 mM EDTA.
The eluent comprises the following components: 10 mM Tris-HCl, 1 mM EDTA, pH 8.0.
2. Application method
The use was made according to the method of use of example 1.
Example 4A kit for extracting genomic DNA from blood by magnetic bead method
1. Composition of components
The kit comprises a lysate, magnetic beads, a washing solution I, a washing solution II and an eluent.
The lysate comprises the following components: 6M guanidine hydrochloride, 8% PEG8000 (w/v), 0.6M sodium iodide, 80 mM Tris-HCl, 60 mM EDTA, 10% CHAPS (w/v), 2% sodium sarcosinate (w/v), pH 8.2.
The concentration of GNT-201 silica-hydroxyl magnetic beads was 2 mg/mL.
The washing liquid I comprises the following components: 2M guanidine hydrochloride, 1M sodium chloride, 40 mM Tris-HCl, 20 mM EDTA, 3% tetradecyl sulfobetaine (w/v), 2% Triton X-100 (w/v), 20% isopropyl alcohol solution (v/v), pH 7.8.
The washing liquid II comprises the following components: 70% ethanol (v/v), 60 mM Tris-HCl, 10 mM EDTA.
The eluent comprises the following components: 10 mM Tris-HCl, 1 mM EDTA, pH 8.0.
2. Application method
The use was made according to the method of use of example 1.
Example 5A kit for extracting genomic DNA from blood by magnetic bead method
1. Composition of components
The kit comprises a lysate, magnetic beads, a washing solution I, a washing solution II and an eluent.
The lysate comprises the following components: 5M guanidine hydrochloride, 8% PEG8000 (w/v), 0.6M sodium iodide, 80 mM Tris-HCl, 60 mM EDTA, 10% CHAPS (w/v), 1.5% sodium sarcosinate (w/v), pH 8.2.
The concentration of GNT-201 silica-hydroxyl magnetic beads was 2 mg/mL.
The washing liquid I comprises the following components: 2M guanidine hydrochloride, 1M sodium chloride, 40 mM Tris-HCl, 20 mM EDTA, 6% tetradecyl sulfobetaine (w/v), 2% Triton X-100 (w/v), 20% isopropyl alcohol solution (v/v), pH 7.8.
The washing liquid II comprises the following components: 70% ethanol (v/v), 60 mM Tris-HCl, 10 mM EDTA.
The eluent comprises the following components: 10 mM Tris-HCl, 1 mM EDTA, pH 8.0.
2. Application method
The use was made according to the method of use of example 1.
Example 6A kit for extracting genomic DNA from blood by magnetic bead method
1. Composition of components
The kit comprises a lysate, magnetic beads, a washing solution I, a washing solution II and an eluent.
The lysate comprises the following components: 4M guanidine hydrochloride, 8% PEG8000 (w/v), 0.6M sodium iodide, 80 mM Tris-HCl, 60 mM EDTA, 10% CHAPS (w/v), 1% sodium sarcosinate (w/v), pH 8.2.
The concentration of GNT-201 silica-hydroxyl magnetic beads was 2 mg/mL.
The washing liquid I comprises the following components: 2M guanidine hydrochloride, 1M sodium chloride, 40 mM Tris-HCl, 20 mM EDTA, 6% tetradecyl sulfobetaine (w/v), 2% Triton X-100 (w/v), 20% isopropyl alcohol solution (v/v), pH 7.8.
The washing liquid II comprises the following components: 70% ethanol (v/v), 60 mM Tris-HCl, 10 mM EDTA.
The eluent comprises the following components: 10 mM Tris-HCl, 1 mM EDTA, pH 8.0.
2. Application method
The use was made according to the method of use of example 1.
Comparative example 1
The difference between this comparative example and example 1 is that the lysate does not contain sodium sarcosinate, otherwise the same as in example 1.
Comparative example 2
This comparative example differs from example 1 in that the lysate does not contain CHAPS, otherwise the same as in example 1.
Comparative example 3
The difference between this comparative example and example 1 is that the lysate does not contain sodium sarcosinate and CHAPS, otherwise the same as in example 1.
Comparative example 4
The difference between this comparative example and example 1 is that PEG8000 in the lysate was replaced with PEG3000 in the same mass to volume ratio as in example 1.
Comparative example 5
The difference between this comparative example and example 1 is that PEG8000 in the lysate was replaced with PEG6000 in the same mass/volume ratio as in example 1.
Comparative example 6
The difference between this comparative example and example 1 is that PEG8000 in the lysate is replaced with PEG10000 in equal mass/volume ratio, otherwise the same as in example 1.
Comparative example 7
The difference between this comparative example and example 1 is that PEG8000 in the lysate was replaced with PEG12000 in the same mass/volume ratio as in example 1.
Comparative example 8
The difference between this comparative example and example 1 is that the washing solution I does not contain tetradecyl sulfobetaine, and the other is the same as in example 1.
Comparative example 9
The difference between this comparative example and example 1 is that the tetradecyl sulfobetaine in the washing solution I was changed to NP40 in an equal mass to volume ratio, and the same as in example 1 was repeated.
Comparative example 10
The difference between this comparative example and example 1 is that the tetradecyl sulfobetaine in the washing solution I was changed to Tween 20 in an equal mass to volume ratio, and the same as in example 1.
Comparative example 11
The difference between this comparative example and example 1 is that the tetradecyl sulfobetaine in the washing solution I was changed to dodecyl sulfobetaine in the same mass-to-volume ratio, and the other is the same as in example 1.
Comparative example 12
The difference between this comparative example and example 1 is that the lysate does not contain sodium sarcosinate and CHAPS, the wash solution I does not contain tetradecyl sulfobetaine, and the other is the same as in example 1.
Performance testing
Nucleic acid extraction was performed using the kits of examples 1 to 6 and comparative examples 1 to 12, and the concentration and purity of the extracted nucleic acid are shown in Table 4.
TABLE 4 nucleic acid concentration and purity
The data in Table 4 shows that the blood genomic DNA extracted by the kit provided in examples 1 to 6, especially example 1, has high concentration and high purity, and the components in example 1 fully exert synergistic effect, and the DNA with high concentration, little influence of protein or phenolic substances and little pollution of guanidine salt is extracted by the extraction method.
The data of example 1 and comparative examples 1-3 show that after sodium sarcosinate and CHAPS are added into the lysate, they fully exert synergistic effect to enhance the lysis, and not only the concentration of extracted nucleic acid is increased, but also the ratio of A260/A280 and A260/A230 is increased.
The results of the data in example 1 and comparative examples 4 to 7 show that the addition of PEG8000 to the lysate is better than the addition of PEG63000, PEG6000, PEG10000, and PEG12000, and the extracted DNA has higher concentration and better purity.
The data of example 1, comparative example 8 and comparative example 12 show that the lysate is sufficiently lysed and the wash solution is sufficiently washed, resulting in a high yield and good purity of nucleic acids. Comparative example 8 in which sodium sarcosinate, CHAPS and tetradecyl sulfobetaine were not added, the washing effect was impaired, and residues of carbohydrates, guanidine salts and the like were also present, resulting in a decrease in a260/a 230. In addition, the tetradecyl sulfobetaine is replaced by other surfactants such as NP40, tween 20, dodecyl sulfobetaine and the like, the cleaning effect is not as good as that of the tetradecyl sulfobetaine, and the A260/A230 does not reach more than 2.0.
The above examples are preferred embodiments of the present invention, but the embodiments of the present invention are not limited to the above examples, and any other changes, modifications, substitutions, combinations, and simplifications that do not depart from the spirit and principle of the present invention should be made in the equivalent manner, and the embodiments are included in the protection scope of the present invention.
Claims (5)
1. A kit for extracting blood genome DNA by a magnetic bead method, which is characterized in that the kit contains a lysate;
the lysate contains the following components: 3 to 7 percent M guanidine hydrochloride, 4 to 10 percent PEG8000 (w/v), 0.3 to 0.7 percent M sodium iodide, 50 to 100 mM Tris-HCl, 50 to 80 mM EDTA, 5 to 10 percent CHAPS (w/v), 0.5 to 2 percent sodium sarcosinate (w/v) and pH 7.0 to 9.0;
the kit also contains a washing liquid I;
the washing liquid I contains the following components: 1 to 3. 3M guanidine hydrochloride, 0.5 to 1.5M sodium chloride, 30 to 50 mM Tris-HCl, 10 to 30 mM EDTA, 5 to 7% tetradecyl sulfobetaine (w/v), 1 to 3% Triton X-100 (w/v), 15 to 25% isopropyl alcohol solution (v/v), pH 7.5 to 8.0;
the kit also contains a washing liquid II;
the washing liquid II comprises the following components: 70-75% ethanol solution (v/v), 55-65 mM Tris-HCl, 5-15 mM EDTA;
the kit also contains eluent;
the eluent contains the following components: 5-15 mM Tris-HCl, 0.5-1.5 mM EDTA,pH 7.5-8.5.
2. The kit of claim 1, wherein the lysate comprises the following components: 4-6-M guanidine hydrochloride, 5-8% PEG8000 (w/v), 0.4-0.6-M sodium iodide, 70-90 mM Tris-HCl, 50-70 mM EDTA, 5-10% CHAPS (w/v), 0.5-2% sodium sarcosinate (w/v), pH 7.5-8.5.
3. The kit of claim 1, wherein the lysate comprises the following components: 6M guanidine hydrochloride, 8% PEG8000 (w/v), 0.6M sodium iodide, 80 mM Tris-HCl, 60 mM EDTA, 10% CHAPS (w/v), 2% sodium sarcosinate (w/v), pH 8.2.
4. A kit according to any one of claims 1 to 3, further comprising magnetic beads.
5. The kit of claim 4, wherein the magnetic beads are silica hydroxyl magnetic beads.
Priority Applications (1)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
CN202410024549.8A CN117535283B (en) | 2024-01-08 | 2024-01-08 | Kit for extracting blood genome DNA by magnetic bead method and application thereof |
Applications Claiming Priority (1)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
CN202410024549.8A CN117535283B (en) | 2024-01-08 | 2024-01-08 | Kit for extracting blood genome DNA by magnetic bead method and application thereof |
Publications (2)
Publication Number | Publication Date |
---|---|
CN117535283A CN117535283A (en) | 2024-02-09 |
CN117535283B true CN117535283B (en) | 2024-03-29 |
Family
ID=89782657
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
CN202410024549.8A Active CN117535283B (en) | 2024-01-08 | 2024-01-08 | Kit for extracting blood genome DNA by magnetic bead method and application thereof |
Country Status (1)
Country | Link |
---|---|
CN (1) | CN117535283B (en) |
Citations (13)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN101613697A (en) * | 2009-08-05 | 2009-12-30 | 公安部物证鉴定中心 | A kind of method of extracting purify DNA |
WO2017044710A1 (en) * | 2015-09-11 | 2017-03-16 | Corning Incorporated | Compositions and methods for nucleic acid purification from blood samples |
CN111269963A (en) * | 2019-12-31 | 2020-06-12 | 广东凯普生物科技股份有限公司 | One-step nucleic acid extraction and transformation kit and use method thereof |
CN111304363A (en) * | 2019-12-31 | 2020-06-19 | 广东凯普生物科技股份有限公司 | EB virus nucleic acid quantitative determination kit |
CN111607590A (en) * | 2020-06-08 | 2020-09-01 | 申翌生物科技(杭州)有限公司 | Nucleic acid extraction method and kit applicable to whole blood, serum or plasma by virtue of magnetic bead method |
CN111996190A (en) * | 2020-09-23 | 2020-11-27 | 常州市武进人民医院 | Whole blood genome DNA extraction kit |
CN112553193A (en) * | 2020-12-23 | 2021-03-26 | 苏州中科先进技术研究院有限公司 | Kit for extracting whole blood DNA by paramagnetic particle method and use method thereof |
CN113913421A (en) * | 2021-12-07 | 2022-01-11 | 苏州海狸生物医学工程有限公司 | Reagent and method for extracting DNA from whole blood |
CN114317523A (en) * | 2021-12-24 | 2022-04-12 | 深圳市华晨阳科技有限公司 | Extraction reagent and extraction kit for high-purity nucleic acid |
CN114965989A (en) * | 2015-02-09 | 2022-08-30 | Dna吉诺特克股份有限公司 | Apparatus, solution and method for collecting samples for related applications, analysis and diagnosis |
CN114993784A (en) * | 2022-05-27 | 2022-09-02 | 重庆医科大学 | Hepatitis B virus particle lysate and preparation and application thereof |
WO2023050156A1 (en) * | 2021-09-29 | 2023-04-06 | 京东方科技集团股份有限公司 | Nucleic acid extraction composition, nucleic acid extraction device and nucleic acid extraction method |
CN117264945A (en) * | 2023-11-22 | 2023-12-22 | 山东新华医疗器械股份有限公司 | Nucleic acid extraction kit based on magnetic bead method, application thereof and nucleic acid extraction method |
Family Cites Families (1)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
MXPA05001815A (en) * | 2004-02-20 | 2005-08-24 | Hoffmann La Roche | Adsorption of nucleic acids to a solid phase. |
-
2024
- 2024-01-08 CN CN202410024549.8A patent/CN117535283B/en active Active
Patent Citations (13)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN101613697A (en) * | 2009-08-05 | 2009-12-30 | 公安部物证鉴定中心 | A kind of method of extracting purify DNA |
CN114965989A (en) * | 2015-02-09 | 2022-08-30 | Dna吉诺特克股份有限公司 | Apparatus, solution and method for collecting samples for related applications, analysis and diagnosis |
WO2017044710A1 (en) * | 2015-09-11 | 2017-03-16 | Corning Incorporated | Compositions and methods for nucleic acid purification from blood samples |
CN111304363A (en) * | 2019-12-31 | 2020-06-19 | 广东凯普生物科技股份有限公司 | EB virus nucleic acid quantitative determination kit |
CN111269963A (en) * | 2019-12-31 | 2020-06-12 | 广东凯普生物科技股份有限公司 | One-step nucleic acid extraction and transformation kit and use method thereof |
CN111607590A (en) * | 2020-06-08 | 2020-09-01 | 申翌生物科技(杭州)有限公司 | Nucleic acid extraction method and kit applicable to whole blood, serum or plasma by virtue of magnetic bead method |
CN111996190A (en) * | 2020-09-23 | 2020-11-27 | 常州市武进人民医院 | Whole blood genome DNA extraction kit |
CN112553193A (en) * | 2020-12-23 | 2021-03-26 | 苏州中科先进技术研究院有限公司 | Kit for extracting whole blood DNA by paramagnetic particle method and use method thereof |
WO2023050156A1 (en) * | 2021-09-29 | 2023-04-06 | 京东方科技集团股份有限公司 | Nucleic acid extraction composition, nucleic acid extraction device and nucleic acid extraction method |
CN113913421A (en) * | 2021-12-07 | 2022-01-11 | 苏州海狸生物医学工程有限公司 | Reagent and method for extracting DNA from whole blood |
CN114317523A (en) * | 2021-12-24 | 2022-04-12 | 深圳市华晨阳科技有限公司 | Extraction reagent and extraction kit for high-purity nucleic acid |
CN114993784A (en) * | 2022-05-27 | 2022-09-02 | 重庆医科大学 | Hepatitis B virus particle lysate and preparation and application thereof |
CN117264945A (en) * | 2023-11-22 | 2023-12-22 | 山东新华医疗器械股份有限公司 | Nucleic acid extraction kit based on magnetic bead method, application thereof and nucleic acid extraction method |
Non-Patent Citations (1)
Title |
---|
MAGNETICALLY ACTUATED PHYSICAL IMPINGEMENT FOR ELUTION OF ARTIFICIAL MUCOUS FROM A SWAB;Banik等;McMaster University MASTER OF APPLIED SCIENCE (2017);20170519;第1-186页 * |
Also Published As
Publication number | Publication date |
---|---|
CN117535283A (en) | 2024-02-09 |
Similar Documents
Publication | Publication Date | Title |
---|---|---|
CN111607590B (en) | Nucleic acid extraction method and kit applicable to whole blood, serum or plasma by virtue of magnetic bead method | |
US5010183A (en) | Process for purifying DNA and RNA using cationic detergents | |
US10273470B2 (en) | Method for isolating RNA from a RNA and DNA containing sample | |
CN110923228A (en) | Binding solution, kit, method and application for nucleic acid purification by magnetic bead method | |
CN113151397B (en) | Nucleic acid extraction kit for extracting virus sample based on magnetic bead method | |
WO2007008722A2 (en) | Method for the isolation of rna from biological sources | |
EP3168303A1 (en) | Method for isolating nucleic acids, wherein the nucleic acids are immobilised on a matrix at elevated temperatures | |
CN103305499B (en) | A kind of directly amplifing reagent and application thereof | |
CN113388611B (en) | Kit for extracting stable bacterial genome DNA by paramagnetic particle method and extraction method thereof | |
AU2621899A (en) | Improved method for the isolation of nucleic acid | |
US9051563B2 (en) | Nucleic acid purification | |
US20120130061A1 (en) | Method F Method For Isolating And Purifying Nucleic Acids | |
CN112899266A (en) | Cracking binding solution for nucleic acid extraction, kit and application thereof | |
CN110938624A (en) | Kit for extracting genome DNA and application thereof | |
WO2005045030A1 (en) | A rapid and low cost method for isolating nucleic acid | |
CN117535283B (en) | Kit for extracting blood genome DNA by magnetic bead method and application thereof | |
CN112941067A (en) | Lysis binding solution for whole blood nucleic acid extraction and kit and application thereof | |
KR100454869B1 (en) | Cell lysis buffer for extracting DNA and extraction method by using thereof | |
CN116004608B (en) | Method and composition for rapidly extracting nucleic acid | |
CN112501156A (en) | High-efficiency extraction method of total DNA of marine shellfish biological sediment | |
CN114350649A (en) | Nucleic acid extraction kit and nucleic acid extraction method | |
CN114317519A (en) | Blood genome DNA extraction kit and use method thereof | |
CN111139287A (en) | Nucleic acid on-site extraction method applied to animal tissues | |
CN113621606B (en) | Kit and method for extracting plasma free DNA | |
CN115786331A (en) | Binding solution and kit for extracting RNA based on paramagnetic particle method and application of binding solution and kit |
Legal Events
Date | Code | Title | Description |
---|---|---|---|
PB01 | Publication | ||
PB01 | Publication | ||
SE01 | Entry into force of request for substantive examination | ||
SE01 | Entry into force of request for substantive examination | ||
GR01 | Patent grant | ||
GR01 | Patent grant |