CN117296100A - 信息处理程序、信息处理方法和信息处理装置 - Google Patents
信息处理程序、信息处理方法和信息处理装置 Download PDFInfo
- Publication number
- CN117296100A CN117296100A CN202180098100.0A CN202180098100A CN117296100A CN 117296100 A CN117296100 A CN 117296100A CN 202180098100 A CN202180098100 A CN 202180098100A CN 117296100 A CN117296100 A CN 117296100A
- Authority
- CN
- China
- Prior art keywords
- codon
- amino acid
- file
- information processing
- index
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Pending
Links
Classifications
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
- G16B30/10—Sequence alignment; Homology search
-
- G—PHYSICS
- G06—COMPUTING OR CALCULATING; COUNTING
- G06F—ELECTRIC DIGITAL DATA PROCESSING
- G06F16/00—Information retrieval; Database structures therefor; File system structures therefor
- G06F16/10—File systems; File servers
- G06F16/13—File access structures, e.g. distributed indices
Landscapes
- Engineering & Computer Science (AREA)
- Physics & Mathematics (AREA)
- Theoretical Computer Science (AREA)
- Life Sciences & Earth Sciences (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Medical Informatics (AREA)
- Health & Medical Sciences (AREA)
- Analytical Chemistry (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Bioinformatics & Computational Biology (AREA)
- Biotechnology (AREA)
- Evolutionary Biology (AREA)
- General Health & Medical Sciences (AREA)
- Biophysics (AREA)
- Spectroscopy & Molecular Physics (AREA)
- Chemical & Material Sciences (AREA)
- Data Mining & Analysis (AREA)
- Databases & Information Systems (AREA)
- General Engineering & Computer Science (AREA)
- General Physics & Mathematics (AREA)
- Information Retrieval, Db Structures And Fs Structures Therefor (AREA)
- Communication Control (AREA)
Applications Claiming Priority (1)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| PCT/JP2021/018730 WO2022244089A1 (ja) | 2021-05-18 | 2021-05-18 | 情報処理プログラム、情報処理方法および情報処理装置 |
Publications (1)
| Publication Number | Publication Date |
|---|---|
| CN117296100A true CN117296100A (zh) | 2023-12-26 |
Family
ID=84141370
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| CN202180098100.0A Pending CN117296100A (zh) | 2021-05-18 | 2021-05-18 | 信息处理程序、信息处理方法和信息处理装置 |
Country Status (6)
| Country | Link |
|---|---|
| US (1) | US20240071568A1 (https=) |
| EP (1) | EP4343769A4 (https=) |
| JP (1) | JP7537609B2 (https=) |
| CN (1) | CN117296100A (https=) |
| AU (1) | AU2021446660A1 (https=) |
| WO (1) | WO2022244089A1 (https=) |
Citations (5)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US5873082A (en) * | 1994-09-01 | 1999-02-16 | Fujitsu Limited | List process system for managing and processing lists of data |
| JP2004234297A (ja) * | 2003-01-30 | 2004-08-19 | Biomatics Inc | 生物学的な配列情報処理装置 |
| US20150175672A1 (en) * | 2012-07-16 | 2015-06-25 | Dow Agrosciences Llc | Process for designing diverged, codon-optimized large repeated dna sequences |
| WO2020049748A1 (ja) * | 2018-09-07 | 2020-03-12 | 富士通株式会社 | 特定方法、特定プログラムおよび情報処理装置 |
| US20210120433A1 (en) * | 2018-05-30 | 2021-04-22 | Sony Corporation | Communication control device, communication control method, and computer program |
Family Cites Families (3)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| EP1732022A4 (en) | 2004-03-31 | 2008-09-24 | Bio Think Tank Co Ltd | APPARATUS FOR RECOVERING A BASIC SEQUENCE |
| JP4547522B1 (ja) * | 2009-01-29 | 2010-09-22 | スパイバー株式会社 | Dnaタグの構築方法 |
| JP2014112307A (ja) | 2012-12-05 | 2014-06-19 | Sony Corp | モチーフ検索プログラム、情報処理装置及びモチーフ検索方法 |
-
2021
- 2021-05-18 JP JP2023522033A patent/JP7537609B2/ja active Active
- 2021-05-18 EP EP21940706.1A patent/EP4343769A4/en active Pending
- 2021-05-18 AU AU2021446660A patent/AU2021446660A1/en not_active Abandoned
- 2021-05-18 WO PCT/JP2021/018730 patent/WO2022244089A1/ja not_active Ceased
- 2021-05-18 CN CN202180098100.0A patent/CN117296100A/zh active Pending
-
2023
- 2023-11-06 US US18/502,405 patent/US20240071568A1/en active Pending
Patent Citations (5)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US5873082A (en) * | 1994-09-01 | 1999-02-16 | Fujitsu Limited | List process system for managing and processing lists of data |
| JP2004234297A (ja) * | 2003-01-30 | 2004-08-19 | Biomatics Inc | 生物学的な配列情報処理装置 |
| US20150175672A1 (en) * | 2012-07-16 | 2015-06-25 | Dow Agrosciences Llc | Process for designing diverged, codon-optimized large repeated dna sequences |
| US20210120433A1 (en) * | 2018-05-30 | 2021-04-22 | Sony Corporation | Communication control device, communication control method, and computer program |
| WO2020049748A1 (ja) * | 2018-09-07 | 2020-03-12 | 富士通株式会社 | 特定方法、特定プログラムおよび情報処理装置 |
Non-Patent Citations (1)
| Title |
|---|
| WUILMART ET AL.: "Linear and inverted repetitions in protein sequences", JOURNAL OF MOLECULAR EVOLUTION, vol. 5, no. 4, 31 December 1975 (1975-12-31), pages 259 * |
Also Published As
| Publication number | Publication date |
|---|---|
| JPWO2022244089A1 (https=) | 2022-11-24 |
| EP4343769A1 (en) | 2024-03-27 |
| JP7537609B2 (ja) | 2024-08-21 |
| WO2022244089A1 (ja) | 2022-11-24 |
| EP4343769A4 (en) | 2024-10-30 |
| AU2021446660A1 (en) | 2023-11-30 |
| US20240071568A1 (en) | 2024-02-29 |
Similar Documents
| Publication | Publication Date | Title |
|---|---|---|
| AU2018440274B2 (en) | Identification method, identification program, and information processing device | |
| CN117296100A (zh) | 信息处理程序、信息处理方法和信息处理装置 | |
| Wang et al. | MRPGA: motif detecting by modified random projection strategy and genetic algorithm | |
| JP7188573B2 (ja) | 評価方法、評価プログラムおよび評価装置 | |
| JP2008102675A (ja) | 塩基配列の同定方法及び核酸分子の二次構造取得方法、並びにこれらを実行する装置及びプログラム | |
| Oğul et al. | SVM-based detection of distant protein structural relationships using pairwise probabilistic suffix trees | |
| Haque et al. | An efficient algorithm for local sequence alignment | |
| Bi | SEAM: A stochastic EM-type algorithm for motif-finding in biopolymer sequences | |
| Sgarbossa et al. | Pairing interacting protein sequences using masked language modeling | |
| Mohammadi et al. | Fast motif discovery using a new motif extension algorithm | |
| JP7619443B2 (ja) | 情報処理プログラム、情報処理方法および情報処理装置 | |
| Hadian Dehkordi et al. | gpaligner: A fast algorithm for global pairwise alignment of dna sequences | |
| Cull et al. | Recent advances in the walking tree method for biological sequence alignment | |
| JP3723767B2 (ja) | 生物学的な配列情報処理方法および装置 | |
| Goswami et al. | Algorithms for string comparison in DNA sequences | |
| Sarkar et al. | Time and Space Efficient Optimal Pairwise Sequence Alignment using GPU | |
| Vayani | Application and Algorithm: Maximal Motif Discovery for Biological Data in a Sliding Window | |
| Chofsoh et al. | Progressive Multiple Sequence Alignment | |
| Bergig et al. | RNA motif search using the structure to string (STR/sup 2/) method | |
| Tapinos et al. | Alignment by the numbers: sequence assembly using reduced dimensionality numerical representations | |
| Noel et al. | Maximal path based conflict resolution approach in multiple homologous gene list alignment | |
| Varma et al. | GenMEx tool (Gene microsatellite extractor): Identification of tandem repeats | |
| Oğul et al. | Discriminative remote homology detection using maximal unique sequence matches | |
| Tan et al. | A new encoding scheme for protein structure representation | |
| Mounsef et al. | A low-complexity probabilistic genome assembly based on hashing functions with SNP detection |
Legal Events
| Date | Code | Title | Description |
|---|---|---|---|
| PB01 | Publication | ||
| PB01 | Publication | ||
| SE01 | Entry into force of request for substantive examination | ||
| SE01 | Entry into force of request for substantive examination |