CN116514795A - Process for preparing 3CLpro protease inhibitors - Google Patents
Process for preparing 3CLpro protease inhibitors Download PDFInfo
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- CN116514795A CN116514795A CN202310029933.2A CN202310029933A CN116514795A CN 116514795 A CN116514795 A CN 116514795A CN 202310029933 A CN202310029933 A CN 202310029933A CN 116514795 A CN116514795 A CN 116514795A
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- 101800000504 3C-like protease Proteins 0.000 title description 5
- 238000004519 manufacturing process Methods 0.000 title description 4
- 239000000137 peptide hydrolase inhibitor Substances 0.000 title description 4
- 229940042399 direct acting antivirals protease inhibitors Drugs 0.000 title description 2
- 238000002360 preparation method Methods 0.000 claims abstract description 22
- 238000006482 condensation reaction Methods 0.000 claims abstract description 7
- 238000005804 alkylation reaction Methods 0.000 claims abstract description 6
- 150000001875 compounds Chemical class 0.000 claims description 132
- 238000000034 method Methods 0.000 claims description 46
- -1 tert-butoxycarbonyl (Boc) Chemical class 0.000 claims description 43
- OKKJLVBELUTLKV-UHFFFAOYSA-N Methanol Chemical compound OC OKKJLVBELUTLKV-UHFFFAOYSA-N 0.000 claims description 39
- ZMANZCXQSJIPKH-UHFFFAOYSA-N Triethylamine Chemical compound CCN(CC)CC ZMANZCXQSJIPKH-UHFFFAOYSA-N 0.000 claims description 39
- ZMXDDKWLCZADIW-UHFFFAOYSA-N N,N-Dimethylformamide Chemical compound CN(C)C=O ZMXDDKWLCZADIW-UHFFFAOYSA-N 0.000 claims description 34
- SJRJJKPEHAURKC-UHFFFAOYSA-N N-Methylmorpholine Chemical compound CN1CCOCC1 SJRJJKPEHAURKC-UHFFFAOYSA-N 0.000 claims description 33
- 229910052757 nitrogen Inorganic materials 0.000 claims description 30
- LFQSCWFLJHTTHZ-UHFFFAOYSA-N Ethanol Chemical compound CCO LFQSCWFLJHTTHZ-UHFFFAOYSA-N 0.000 claims description 28
- XLYOFNOQVPJJNP-UHFFFAOYSA-N water Substances O XLYOFNOQVPJJNP-UHFFFAOYSA-N 0.000 claims description 28
- JGFZNNIVVJXRND-UHFFFAOYSA-N N,N-diisopropylethylamine Substances CCN(C(C)C)C(C)C JGFZNNIVVJXRND-UHFFFAOYSA-N 0.000 claims description 23
- 239000003795 chemical substances by application Substances 0.000 claims description 22
- VEXZGXHMUGYJMC-UHFFFAOYSA-N Hydrochloric acid Chemical compound Cl VEXZGXHMUGYJMC-UHFFFAOYSA-N 0.000 claims description 21
- DTQVDTLACAAQTR-UHFFFAOYSA-N Trifluoroacetic acid Chemical compound OC(=O)C(F)(F)F DTQVDTLACAAQTR-UHFFFAOYSA-N 0.000 claims description 20
- IXCSERBJSXMMFS-UHFFFAOYSA-N hydrogen chloride Substances Cl.Cl IXCSERBJSXMMFS-UHFFFAOYSA-N 0.000 claims description 18
- 230000008569 process Effects 0.000 claims description 17
- 150000003839 salts Chemical class 0.000 claims description 17
- WEVYAHXRMPXWCK-UHFFFAOYSA-N Acetonitrile Chemical compound CC#N WEVYAHXRMPXWCK-UHFFFAOYSA-N 0.000 claims description 15
- LMDZBCPBFSXMTL-UHFFFAOYSA-N 1-Ethyl-3-(3-dimethylaminopropyl)carbodiimide Substances CCN=C=NCCCN(C)C LMDZBCPBFSXMTL-UHFFFAOYSA-N 0.000 claims description 14
- FPQQSJJWHUJYPU-UHFFFAOYSA-N 3-(dimethylamino)propyliminomethylidene-ethylazanium;chloride Chemical compound Cl.CCN=C=NCCCN(C)C FPQQSJJWHUJYPU-UHFFFAOYSA-N 0.000 claims description 14
- 150000007530 organic bases Chemical class 0.000 claims description 14
- BAVYZALUXZFZLV-UHFFFAOYSA-N Methylamine Chemical compound NC BAVYZALUXZFZLV-UHFFFAOYSA-N 0.000 claims description 12
- CSCPPACGZOOCGX-UHFFFAOYSA-N Acetone Chemical compound CC(C)=O CSCPPACGZOOCGX-UHFFFAOYSA-N 0.000 claims description 10
- FXHOOIRPVKKKFG-UHFFFAOYSA-N N,N-Dimethylacetamide Chemical compound CN(C)C(C)=O FXHOOIRPVKKKFG-UHFFFAOYSA-N 0.000 claims description 10
- 239000002904 solvent Substances 0.000 claims description 10
- 239000002253 acid Substances 0.000 claims description 9
- 239000011230 binding agent Substances 0.000 claims description 9
- 239000003153 chemical reaction reagent Substances 0.000 claims description 9
- ZWEHNKRNPOVVGH-UHFFFAOYSA-N 2-Butanone Chemical compound CCC(C)=O ZWEHNKRNPOVVGH-UHFFFAOYSA-N 0.000 claims description 8
- 239000007821 HATU Substances 0.000 claims description 8
- KFZMGEQAYNKOFK-UHFFFAOYSA-N Isopropanol Chemical compound CC(C)O KFZMGEQAYNKOFK-UHFFFAOYSA-N 0.000 claims description 8
- JUJWROOIHBZHMG-UHFFFAOYSA-N Pyridine Chemical compound C1=CC=NC=C1 JUJWROOIHBZHMG-UHFFFAOYSA-N 0.000 claims description 8
- RYHBNJHYFVUHQT-UHFFFAOYSA-N 1,4-Dioxane Chemical compound C1COCCO1 RYHBNJHYFVUHQT-UHFFFAOYSA-N 0.000 claims description 7
- ASOKPJOREAFHNY-UHFFFAOYSA-N 1-Hydroxybenzotriazole Chemical compound C1=CC=C2N(O)N=NC2=C1 ASOKPJOREAFHNY-UHFFFAOYSA-N 0.000 claims description 7
- SECXISVLQFMRJM-UHFFFAOYSA-N N-Methylpyrrolidone Chemical compound CN1CCCC1=O SECXISVLQFMRJM-UHFFFAOYSA-N 0.000 claims description 7
- QGZKDVFQNNGYKY-UHFFFAOYSA-N ammonia Natural products N QGZKDVFQNNGYKY-UHFFFAOYSA-N 0.000 claims description 7
- NWZSZGALRFJKBT-KNIFDHDWSA-N (2s)-2,6-diaminohexanoic acid;(2s)-2-hydroxybutanedioic acid Chemical compound OC(=O)[C@@H](O)CC(O)=O.NCCCC[C@H](N)C(O)=O NWZSZGALRFJKBT-KNIFDHDWSA-N 0.000 claims description 6
- VHUUQVKOLVNVRT-UHFFFAOYSA-N Ammonium hydroxide Chemical compound [NH4+].[OH-] VHUUQVKOLVNVRT-UHFFFAOYSA-N 0.000 claims description 6
- CDBYLPFSWZWCQE-UHFFFAOYSA-L Sodium Carbonate Chemical compound [Na+].[Na+].[O-]C([O-])=O CDBYLPFSWZWCQE-UHFFFAOYSA-L 0.000 claims description 6
- 125000000217 alkyl group Chemical group 0.000 claims description 6
- 238000010511 deprotection reaction Methods 0.000 claims description 6
- IKDUDTNKRLTJSI-UHFFFAOYSA-N hydrazine monohydrate Substances O.NN IKDUDTNKRLTJSI-UHFFFAOYSA-N 0.000 claims description 6
- BWHMMNNQKKPAPP-UHFFFAOYSA-L potassium carbonate Chemical compound [K+].[K+].[O-]C([O-])=O BWHMMNNQKKPAPP-UHFFFAOYSA-L 0.000 claims description 6
- 125000002924 primary amino group Chemical group [H]N([H])* 0.000 claims description 6
- QCQCHGYLTSGIGX-GHXANHINSA-N 4-[[(3ar,5ar,5br,7ar,9s,11ar,11br,13as)-5a,5b,8,8,11a-pentamethyl-3a-[(5-methylpyridine-3-carbonyl)amino]-2-oxo-1-propan-2-yl-4,5,6,7,7a,9,10,11,11b,12,13,13a-dodecahydro-3h-cyclopenta[a]chrysen-9-yl]oxy]-2,2-dimethyl-4-oxobutanoic acid Chemical group N([C@@]12CC[C@@]3(C)[C@]4(C)CC[C@H]5C(C)(C)[C@@H](OC(=O)CC(C)(C)C(O)=O)CC[C@]5(C)[C@H]4CC[C@@H]3C1=C(C(C2)=O)C(C)C)C(=O)C1=CN=CC(C)=C1 QCQCHGYLTSGIGX-GHXANHINSA-N 0.000 claims description 5
- VFRSADQPWYCXDG-LEUCUCNGSA-N ethyl (2s,5s)-5-methylpyrrolidine-2-carboxylate;2,2,2-trifluoroacetic acid Chemical compound OC(=O)C(F)(F)F.CCOC(=O)[C@@H]1CC[C@H](C)N1 VFRSADQPWYCXDG-LEUCUCNGSA-N 0.000 claims description 5
- NPZTUJOABDZTLV-UHFFFAOYSA-N hydroxybenzotriazole Substances O=C1C=CC=C2NNN=C12 NPZTUJOABDZTLV-UHFFFAOYSA-N 0.000 claims description 5
- 125000002496 methyl group Chemical group [H]C([H])([H])* 0.000 claims description 5
- 230000009471 action Effects 0.000 claims description 4
- 239000003054 catalyst Substances 0.000 claims description 4
- 239000007810 chemical reaction solvent Substances 0.000 claims description 4
- 229910052739 hydrogen Inorganic materials 0.000 claims description 4
- 125000000449 nitro group Chemical group [O-][N+](*)=O 0.000 claims description 4
- 125000000612 phthaloyl group Chemical group C(C=1C(C(=O)*)=CC=CC1)(=O)* 0.000 claims description 4
- BDERNNFJNOPAEC-UHFFFAOYSA-N propan-1-ol Chemical compound CCCO BDERNNFJNOPAEC-UHFFFAOYSA-N 0.000 claims description 4
- 125000006239 protecting group Chemical group 0.000 claims description 4
- UMJSCPRVCHMLSP-UHFFFAOYSA-N pyridine Natural products COC1=CC=CN=C1 UMJSCPRVCHMLSP-UHFFFAOYSA-N 0.000 claims description 4
- OISVCGZHLKNMSJ-UHFFFAOYSA-N 2,6-Lutidine Substances CC1=CC=CC(C)=N1 OISVCGZHLKNMSJ-UHFFFAOYSA-N 0.000 claims description 3
- 229910052794 bromium Inorganic materials 0.000 claims description 3
- 229910052731 fluorine Inorganic materials 0.000 claims description 3
- 229910052736 halogen Inorganic materials 0.000 claims description 3
- 150000002367 halogens Chemical class 0.000 claims description 3
- 229910000027 potassium carbonate Inorganic materials 0.000 claims description 3
- 229910000029 sodium carbonate Inorganic materials 0.000 claims description 3
- VHYFNPMBLIVWCW-UHFFFAOYSA-N 4-Dimethylaminopyridine Chemical compound CN(C)C1=CC=NC=C1 VHYFNPMBLIVWCW-UHFFFAOYSA-N 0.000 claims 2
- RRWOBMRVLZQKEY-UHFFFAOYSA-N [2-(benzotriazol-1-yloxy)pyrrolidin-1-yl]-dipyrrolidin-1-ylphosphane Chemical compound C1CCCN1P(N1C(CCC1)ON1C2=CC=CC=C2N=N1)N1CCCC1 RRWOBMRVLZQKEY-UHFFFAOYSA-N 0.000 claims 2
- 229960000549 4-dimethylaminophenol Drugs 0.000 claims 1
- XVMSFILGAMDHEY-UHFFFAOYSA-N 6-(4-aminophenyl)sulfonylpyridin-3-amine Chemical compound C1=CC(N)=CC=C1S(=O)(=O)C1=CC=C(N)C=N1 XVMSFILGAMDHEY-UHFFFAOYSA-N 0.000 claims 1
- 238000006243 chemical reaction Methods 0.000 abstract description 48
- 229940125673 3C-like protease inhibitor Drugs 0.000 abstract description 2
- 150000001408 amides Chemical class 0.000 abstract description 2
- 238000009776 industrial production Methods 0.000 abstract 1
- XEKOWRVHYACXOJ-UHFFFAOYSA-N Ethyl acetate Chemical compound CCOC(C)=O XEKOWRVHYACXOJ-UHFFFAOYSA-N 0.000 description 87
- IJGRMHOSHXDMSA-UHFFFAOYSA-N Atomic nitrogen Chemical compound N#N IJGRMHOSHXDMSA-UHFFFAOYSA-N 0.000 description 39
- 239000012074 organic phase Substances 0.000 description 34
- 238000004895 liquid chromatography mass spectrometry Methods 0.000 description 25
- 239000000243 solution Substances 0.000 description 25
- IAZDPXIOMUYVGZ-UHFFFAOYSA-N Dimethylsulphoxide Chemical compound CS(C)=O IAZDPXIOMUYVGZ-UHFFFAOYSA-N 0.000 description 21
- RTZKZFJDLAIYFH-UHFFFAOYSA-N Diethyl ether Chemical compound CCOCC RTZKZFJDLAIYFH-UHFFFAOYSA-N 0.000 description 20
- 238000012544 monitoring process Methods 0.000 description 20
- PMZURENOXWZQFD-UHFFFAOYSA-L Sodium Sulfate Chemical compound [Na+].[Na+].[O-]S([O-])(=O)=O PMZURENOXWZQFD-UHFFFAOYSA-L 0.000 description 19
- HPALAKNZSZLMCH-UHFFFAOYSA-M sodium;chloride;hydrate Chemical class O.[Na+].[Cl-] HPALAKNZSZLMCH-UHFFFAOYSA-M 0.000 description 19
- DQXKOHDUMJLXKH-PHEQNACWSA-N (e)-n-[2-[2-[[(e)-oct-2-enoyl]amino]ethyldisulfanyl]ethyl]oct-2-enamide Chemical compound CCCCC\C=C\C(=O)NCCSSCCNC(=O)\C=C\CCCCC DQXKOHDUMJLXKH-PHEQNACWSA-N 0.000 description 18
- YMWUJEATGCHHMB-UHFFFAOYSA-N Dichloromethane Chemical compound ClCCl YMWUJEATGCHHMB-UHFFFAOYSA-N 0.000 description 18
- 238000012360 testing method Methods 0.000 description 18
- 239000003480 eluent Substances 0.000 description 16
- 239000007858 starting material Substances 0.000 description 16
- VYPSYNLAJGMNEJ-UHFFFAOYSA-N Silicium dioxide Chemical compound O=[Si]=O VYPSYNLAJGMNEJ-UHFFFAOYSA-N 0.000 description 15
- 239000000741 silica gel Substances 0.000 description 15
- 229910002027 silica gel Inorganic materials 0.000 description 15
- 230000008034 disappearance Effects 0.000 description 14
- 238000004440 column chromatography Methods 0.000 description 12
- 229910000041 hydrogen chloride Inorganic materials 0.000 description 12
- 238000010791 quenching Methods 0.000 description 11
- 241000699670 Mus sp. Species 0.000 description 10
- 239000000203 mixture Substances 0.000 description 10
- 239000003208 petroleum Substances 0.000 description 10
- 241001465754 Metazoa Species 0.000 description 8
- BZLVMXJERCGZMT-UHFFFAOYSA-N Methyl tert-butyl ether Chemical compound COC(C)(C)C BZLVMXJERCGZMT-UHFFFAOYSA-N 0.000 description 8
- WYURNTSHIVDZCO-UHFFFAOYSA-N Tetrahydrofuran Chemical compound C1CCOC1 WYURNTSHIVDZCO-UHFFFAOYSA-N 0.000 description 8
- 239000012141 concentrate Substances 0.000 description 8
- 241000282567 Macaca fascicularis Species 0.000 description 7
- 238000004821 distillation Methods 0.000 description 7
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- 238000005481 NMR spectroscopy Methods 0.000 description 6
- 125000001584 benzyloxycarbonyl group Chemical group C(=O)(OCC1=CC=CC=C1)* 0.000 description 6
- 125000005626 carbonium group Chemical group 0.000 description 6
- HNVIQLPOGUDBSU-OLQVQODUSA-N (2s,6r)-2,6-dimethylmorpholine Chemical compound C[C@H]1CNC[C@@H](C)O1 HNVIQLPOGUDBSU-OLQVQODUSA-N 0.000 description 5
- 101800000535 3C-like proteinase Proteins 0.000 description 5
- 101800002396 3C-like proteinase nsp5 Proteins 0.000 description 5
- SXOKSXISBYNNQM-UHFFFAOYSA-N 5-bromo-2-fluoro-3-nitrobenzoic acid Chemical compound OC(=O)C1=CC(Br)=CC([N+]([O-])=O)=C1F SXOKSXISBYNNQM-UHFFFAOYSA-N 0.000 description 5
- 108091005804 Peptidases Proteins 0.000 description 5
- 239000004365 Protease Substances 0.000 description 5
- 102100037486 Reverse transcriptase/ribonuclease H Human genes 0.000 description 5
- 238000010898 silica gel chromatography Methods 0.000 description 5
- WUOQXNWMYLFAHT-MRVPVSSYSA-N tert-butyl n-[(3r)-piperidin-3-yl]carbamate Chemical compound CC(C)(C)OC(=O)N[C@@H]1CCCNC1 WUOQXNWMYLFAHT-MRVPVSSYSA-N 0.000 description 5
- 229920002565 Polyethylene Glycol 400 Polymers 0.000 description 4
- HEDRZPFGACZZDS-MICDWDOJSA-N Trichloro(2H)methane Chemical compound [2H]C(Cl)(Cl)Cl HEDRZPFGACZZDS-MICDWDOJSA-N 0.000 description 4
- 239000008280 blood Substances 0.000 description 4
- 210000004369 blood Anatomy 0.000 description 4
- 238000002425 crystallisation Methods 0.000 description 4
- 230000008025 crystallization Effects 0.000 description 4
- 238000002474 experimental method Methods 0.000 description 4
- 238000001727 in vivo Methods 0.000 description 4
- 230000005764 inhibitory process Effects 0.000 description 4
- ZCSHNCUQKCANBX-UHFFFAOYSA-N lithium diisopropylamide Chemical compound [Li+].CC(C)[N-]C(C)C ZCSHNCUQKCANBX-UHFFFAOYSA-N 0.000 description 4
- JLFNLZLINWHATN-UHFFFAOYSA-N pentaethylene glycol Chemical compound OCCOCCOCCOCCOCCO JLFNLZLINWHATN-UHFFFAOYSA-N 0.000 description 4
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- 108090000623 proteins and genes Proteins 0.000 description 4
- 239000011541 reaction mixture Substances 0.000 description 4
- 238000000967 suction filtration Methods 0.000 description 4
- 239000012085 test solution Substances 0.000 description 4
- YLQBMQCUIZJEEH-UHFFFAOYSA-N tetrahydrofuran Natural products C=1C=COC=1 YLQBMQCUIZJEEH-UHFFFAOYSA-N 0.000 description 4
- 238000004809 thin layer chromatography Methods 0.000 description 4
- FYSNRJHAOHDILO-UHFFFAOYSA-N thionyl chloride Chemical compound ClS(Cl)=O FYSNRJHAOHDILO-UHFFFAOYSA-N 0.000 description 4
- 125000005500 uronium group Chemical group 0.000 description 4
- 239000003643 water by type Substances 0.000 description 4
- QTBSBXVTEAMEQO-UHFFFAOYSA-N Acetic acid Chemical compound CC(O)=O QTBSBXVTEAMEQO-UHFFFAOYSA-N 0.000 description 3
- IAZDPXIOMUYVGZ-WFGJKAKNSA-N Dimethyl sulfoxide Chemical compound [2H]C([2H])([2H])S(=O)C([2H])([2H])[2H] IAZDPXIOMUYVGZ-WFGJKAKNSA-N 0.000 description 3
- WMFOQBRAJBCJND-UHFFFAOYSA-M Lithium hydroxide Chemical compound [Li+].[OH-] WMFOQBRAJBCJND-UHFFFAOYSA-M 0.000 description 3
- KWYUFKZDYYNOTN-UHFFFAOYSA-M Potassium hydroxide Chemical compound [OH-].[K+] KWYUFKZDYYNOTN-UHFFFAOYSA-M 0.000 description 3
- HEMHJVSKTPXQMS-UHFFFAOYSA-M Sodium hydroxide Chemical compound [OH-].[Na+] HEMHJVSKTPXQMS-UHFFFAOYSA-M 0.000 description 3
- 150000001718 carbodiimides Chemical class 0.000 description 3
- 238000001514 detection method Methods 0.000 description 3
- 230000000694 effects Effects 0.000 description 3
- 239000012065 filter cake Substances 0.000 description 3
- 230000002401 inhibitory effect Effects 0.000 description 3
- OKDQKPLMQBXTNH-UHFFFAOYSA-N n,n-dimethyl-2h-pyridin-1-amine Chemical compound CN(C)N1CC=CC=C1 OKDQKPLMQBXTNH-UHFFFAOYSA-N 0.000 description 3
- 102000004169 proteins and genes Human genes 0.000 description 3
- 125000003088 (fluoren-9-ylmethoxy)carbonyl group Chemical group 0.000 description 2
- BDNKZNFMNDZQMI-UHFFFAOYSA-N 1,3-diisopropylcarbodiimide Chemical compound CC(C)N=C=NC(C)C BDNKZNFMNDZQMI-UHFFFAOYSA-N 0.000 description 2
- WORJRXHJTUTINR-UHFFFAOYSA-N 1,4-dioxane;hydron;chloride Chemical compound Cl.C1COCCO1 WORJRXHJTUTINR-UHFFFAOYSA-N 0.000 description 2
- 238000005160 1H NMR spectroscopy Methods 0.000 description 2
- HZAXFHJVJLSVMW-UHFFFAOYSA-N 2-Aminoethan-1-ol Chemical compound NCCO HZAXFHJVJLSVMW-UHFFFAOYSA-N 0.000 description 2
- KLDLRDSRCMJKGM-UHFFFAOYSA-N 3-[chloro-(2-oxo-1,3-oxazolidin-3-yl)phosphoryl]-1,3-oxazolidin-2-one Chemical compound C1COC(=O)N1P(=O)(Cl)N1CCOC1=O KLDLRDSRCMJKGM-UHFFFAOYSA-N 0.000 description 2
- OKKJLVBELUTLKV-MZCSYVLQSA-N Deuterated methanol Chemical compound [2H]OC([2H])([2H])[2H] OKKJLVBELUTLKV-MZCSYVLQSA-N 0.000 description 2
- QOSSAOTZNIDXMA-UHFFFAOYSA-N Dicylcohexylcarbodiimide Chemical group C1CCCCC1N=C=NC1CCCCC1 QOSSAOTZNIDXMA-UHFFFAOYSA-N 0.000 description 2
- 102000004190 Enzymes Human genes 0.000 description 2
- 108090000790 Enzymes Proteins 0.000 description 2
- PIICEJLVQHRZGT-UHFFFAOYSA-N Ethylenediamine Chemical compound NCCN PIICEJLVQHRZGT-UHFFFAOYSA-N 0.000 description 2
- XLYOFNOQVPJJNP-ZSJDYOACSA-N Heavy water Chemical compound [2H]O[2H] XLYOFNOQVPJJNP-ZSJDYOACSA-N 0.000 description 2
- MZRVEZGGRBJDDB-UHFFFAOYSA-N N-Butyllithium Chemical compound [Li]CCCC MZRVEZGGRBJDDB-UHFFFAOYSA-N 0.000 description 2
- 229910019142 PO4 Inorganic materials 0.000 description 2
- 101800001016 Picornain 3C-like protease Proteins 0.000 description 2
- 101800000596 Probable picornain 3C-like protease Proteins 0.000 description 2
- 229940124158 Protease/peptidase inhibitor Drugs 0.000 description 2
- QAOWNCQODCNURD-UHFFFAOYSA-N Sulfuric acid Chemical compound OS(O)(=O)=O QAOWNCQODCNURD-UHFFFAOYSA-N 0.000 description 2
- BHIIGRBMZRSDRI-UHFFFAOYSA-N [chloro(phenoxy)phosphoryl]oxybenzene Chemical compound C=1C=CC=CC=1OP(=O)(Cl)OC1=CC=CC=C1 BHIIGRBMZRSDRI-UHFFFAOYSA-N 0.000 description 2
- 239000012190 activator Substances 0.000 description 2
- RROBIDXNTUAHFW-UHFFFAOYSA-N benzotriazol-1-yloxy-tris(dimethylamino)phosphanium Chemical compound C1=CC=C2N(O[P+](N(C)C)(N(C)C)N(C)C)N=NC2=C1 RROBIDXNTUAHFW-UHFFFAOYSA-N 0.000 description 2
- QRUDEWIWKLJBPS-UHFFFAOYSA-N benzotriazole Chemical compound C1=CC=C2N[N][N]C2=C1 QRUDEWIWKLJBPS-UHFFFAOYSA-N 0.000 description 2
- 239000012964 benzotriazole Substances 0.000 description 2
- 125000001797 benzyl group Chemical group [H]C1=C([H])C([H])=C(C([H])=C1[H])C([H])([H])* 0.000 description 2
- GDTBXPJZTBHREO-UHFFFAOYSA-N bromine Chemical compound BrBr GDTBXPJZTBHREO-UHFFFAOYSA-N 0.000 description 2
- 238000005119 centrifugation Methods 0.000 description 2
- ZWWWLCMDTZFSOO-UHFFFAOYSA-N diethoxyphosphorylformonitrile Chemical compound CCOP(=O)(C#N)OCC ZWWWLCMDTZFSOO-UHFFFAOYSA-N 0.000 description 2
- BGRWYRAHAFMIBJ-UHFFFAOYSA-N diisopropylcarbodiimide Natural products CC(C)NC(=O)NC(C)C BGRWYRAHAFMIBJ-UHFFFAOYSA-N 0.000 description 2
- 125000002147 dimethylamino group Chemical group [H]C([H])([H])N(*)C([H])([H])[H] 0.000 description 2
- 238000000132 electrospray ionisation Methods 0.000 description 2
- 238000011156 evaluation Methods 0.000 description 2
- 238000003304 gavage Methods 0.000 description 2
- 238000004128 high performance liquid chromatography Methods 0.000 description 2
- 150000007529 inorganic bases Chemical class 0.000 description 2
- 150000002500 ions Chemical class 0.000 description 2
- WSFSSNUMVMOOMR-BJUDXGSMSA-N methanone Chemical compound O=[11CH2] WSFSSNUMVMOOMR-BJUDXGSMSA-N 0.000 description 2
- 239000011259 mixed solution Substances 0.000 description 2
- 238000000643 oven drying Methods 0.000 description 2
- NBIIXXVUZAFLBC-UHFFFAOYSA-K phosphate Chemical compound [O-]P([O-])([O-])=O NBIIXXVUZAFLBC-UHFFFAOYSA-K 0.000 description 2
- 239000010452 phosphate Substances 0.000 description 2
- 150000004714 phosphonium salts Chemical class 0.000 description 2
- 239000011535 reaction buffer Substances 0.000 description 2
- WRIKHQLVHPKCJU-UHFFFAOYSA-N sodium bis(trimethylsilyl)amide Chemical compound C[Si](C)(C)N([Na])[Si](C)(C)C WRIKHQLVHPKCJU-UHFFFAOYSA-N 0.000 description 2
- MFRIHAYPQRLWNB-UHFFFAOYSA-N sodium tert-butoxide Chemical compound [Na+].CC(C)(C)[O-] MFRIHAYPQRLWNB-UHFFFAOYSA-N 0.000 description 2
- 241000894007 species Species 0.000 description 2
- 125000003554 tetrahydropyrrolyl group Chemical group 0.000 description 2
- 125000002221 trityl group Chemical group [H]C1=C([H])C([H])=C([H])C([H])=C1C([*])(C1=C(C(=C(C(=C1[H])[H])[H])[H])[H])C1=C([H])C([H])=C([H])C([H])=C1[H] 0.000 description 2
- 210000003462 vein Anatomy 0.000 description 2
- 230000029812 viral genome replication Effects 0.000 description 2
- VSTXCZGEEVFJES-UHFFFAOYSA-N 1-cycloundecyl-1,5-diazacycloundec-5-ene Chemical compound C1CCCCCC(CCCC1)N1CCCCCC=NCCC1 VSTXCZGEEVFJES-UHFFFAOYSA-N 0.000 description 1
- BMYNFMYTOJXKLE-UHFFFAOYSA-N 3-azaniumyl-2-hydroxypropanoate Chemical compound NCC(O)C(O)=O BMYNFMYTOJXKLE-UHFFFAOYSA-N 0.000 description 1
- XZSWHQCDTYJZJA-UHFFFAOYSA-N 5-(methylamino)pyridine-3-carboxylic acid Chemical compound CNC1=CN=CC(C(O)=O)=C1 XZSWHQCDTYJZJA-UHFFFAOYSA-N 0.000 description 1
- ZCYVEMRRCGMTRW-UHFFFAOYSA-N 7553-56-2 Chemical group [I] ZCYVEMRRCGMTRW-UHFFFAOYSA-N 0.000 description 1
- HBAQYPYDRFILMT-UHFFFAOYSA-N 8-[3-(1-cyclopropylpyrazol-4-yl)-1H-pyrazolo[4,3-d]pyrimidin-5-yl]-3-methyl-3,8-diazabicyclo[3.2.1]octan-2-one Chemical class C1(CC1)N1N=CC(=C1)C1=NNC2=C1N=C(N=C2)N1C2C(N(CC1CC2)C)=O HBAQYPYDRFILMT-UHFFFAOYSA-N 0.000 description 1
- 101100096578 Arabidopsis thaliana SQD2 gene Proteins 0.000 description 1
- 208000025721 COVID-19 Diseases 0.000 description 1
- 241001678559 COVID-19 virus Species 0.000 description 1
- 241000282693 Cercopithecidae Species 0.000 description 1
- KZBUYRJDOAKODT-UHFFFAOYSA-N Chlorine Chemical compound ClCl KZBUYRJDOAKODT-UHFFFAOYSA-N 0.000 description 1
- 241000711573 Coronaviridae Species 0.000 description 1
- 108700003471 Coronavirus 3C Proteases Proteins 0.000 description 1
- PXGOKWXKJXAPGV-UHFFFAOYSA-N Fluorine Chemical compound FF PXGOKWXKJXAPGV-UHFFFAOYSA-N 0.000 description 1
- 102000014150 Interferons Human genes 0.000 description 1
- 108010050904 Interferons Proteins 0.000 description 1
- KDLHZDBZIXYQEI-UHFFFAOYSA-N Palladium on carbon Substances [Pd] KDLHZDBZIXYQEI-UHFFFAOYSA-N 0.000 description 1
- 101150003085 Pdcl gene Proteins 0.000 description 1
- 241000233805 Phoenix Species 0.000 description 1
- 108010076039 Polyproteins Proteins 0.000 description 1
- 101710150114 Protein rep Proteins 0.000 description 1
- 101710118046 RNA-directed RNA polymerase Proteins 0.000 description 1
- 101710152114 Replication protein Proteins 0.000 description 1
- UIIMBOGNXHQVGW-DEQYMQKBSA-M Sodium bicarbonate-14C Chemical compound [Na+].O[14C]([O-])=O UIIMBOGNXHQVGW-DEQYMQKBSA-M 0.000 description 1
- 101710172711 Structural protein Proteins 0.000 description 1
- 239000012317 TBTU Substances 0.000 description 1
- DTQVDTLACAAQTR-UHFFFAOYSA-M Trifluoroacetate Chemical compound [O-]C(=O)C(F)(F)F DTQVDTLACAAQTR-UHFFFAOYSA-M 0.000 description 1
- 208000036142 Viral infection Diseases 0.000 description 1
- CLZISMQKJZCZDN-UHFFFAOYSA-N [benzotriazol-1-yloxy(dimethylamino)methylidene]-dimethylazanium Chemical compound C1=CC=C2N(OC(N(C)C)=[N+](C)C)N=NC2=C1 CLZISMQKJZCZDN-UHFFFAOYSA-N 0.000 description 1
- 230000004913 activation Effects 0.000 description 1
- 229910021529 ammonia Inorganic materials 0.000 description 1
- 238000004458 analytical method Methods 0.000 description 1
- 239000012300 argon atmosphere Substances 0.000 description 1
- 150000001540 azides Chemical class 0.000 description 1
- 210000001142 back Anatomy 0.000 description 1
- 239000004305 biphenyl Substances 0.000 description 1
- 235000010290 biphenyl Nutrition 0.000 description 1
- AXCZMVOFGPJBDE-UHFFFAOYSA-L calcium dihydroxide Chemical compound [OH-].[OH-].[Ca+2] AXCZMVOFGPJBDE-UHFFFAOYSA-L 0.000 description 1
- 239000000920 calcium hydroxide Substances 0.000 description 1
- 229910001861 calcium hydroxide Inorganic materials 0.000 description 1
- 238000004364 calculation method Methods 0.000 description 1
- 239000000460 chlorine Substances 0.000 description 1
- 229910052801 chlorine Inorganic materials 0.000 description 1
- 230000000052 comparative effect Effects 0.000 description 1
- 229940125782 compound 2 Drugs 0.000 description 1
- 238000007405 data analysis Methods 0.000 description 1
- 238000010790 dilution Methods 0.000 description 1
- 239000012895 dilution Substances 0.000 description 1
- 239000003814 drug Substances 0.000 description 1
- 229940079593 drug Drugs 0.000 description 1
- 238000001035 drying Methods 0.000 description 1
- DZGCGKFAPXFTNM-UHFFFAOYSA-N ethanol;hydron;chloride Chemical compound Cl.CCO DZGCGKFAPXFTNM-UHFFFAOYSA-N 0.000 description 1
- 125000004494 ethyl ester group Chemical group 0.000 description 1
- 125000001495 ethyl group Chemical group [H]C([H])([H])C([H])([H])* 0.000 description 1
- 238000002866 fluorescence resonance energy transfer Methods 0.000 description 1
- 239000011737 fluorine Substances 0.000 description 1
- 238000000589 high-performance liquid chromatography-mass spectrometry Methods 0.000 description 1
- 125000001183 hydrocarbyl group Chemical group 0.000 description 1
- FUKUFMFMCZIRNT-UHFFFAOYSA-N hydron;methanol;chloride Chemical compound Cl.OC FUKUFMFMCZIRNT-UHFFFAOYSA-N 0.000 description 1
- 229940079322 interferon Drugs 0.000 description 1
- 230000003834 intracellular effect Effects 0.000 description 1
- 238000001990 intravenous administration Methods 0.000 description 1
- 229910052740 iodine Inorganic materials 0.000 description 1
- 125000000959 isobutyl group Chemical group [H]C([H])([H])C([H])(C([H])([H])[H])C([H])([H])* 0.000 description 1
- 125000001972 isopentyl group Chemical group [H]C([H])([H])C([H])(C([H])([H])[H])C([H])([H])C([H])([H])* 0.000 description 1
- 125000001449 isopropyl group Chemical group [H]C([H])([H])C([H])(*)C([H])([H])[H] 0.000 description 1
- UBJFKNSINUCEAL-UHFFFAOYSA-N lithium;2-methylpropane Chemical compound [Li+].C[C-](C)C UBJFKNSINUCEAL-UHFFFAOYSA-N 0.000 description 1
- 210000003141 lower extremity Anatomy 0.000 description 1
- 238000003760 magnetic stirring Methods 0.000 description 1
- 239000000463 material Substances 0.000 description 1
- 230000004048 modification Effects 0.000 description 1
- 238000012986 modification Methods 0.000 description 1
- 125000004108 n-butyl group Chemical group [H]C([H])([H])C([H])([H])C([H])([H])C([H])([H])* 0.000 description 1
- 125000001280 n-hexyl group Chemical group C(CCCCC)* 0.000 description 1
- 125000000740 n-pentyl group Chemical group [H]C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])* 0.000 description 1
- 125000004123 n-propyl group Chemical group [H]C([H])([H])C([H])([H])C([H])([H])* 0.000 description 1
- 125000001971 neopentyl group Chemical group [H]C([*])([H])C(C([H])([H])[H])(C([H])([H])[H])C([H])([H])[H] 0.000 description 1
- 239000012299 nitrogen atmosphere Substances 0.000 description 1
- 238000010534 nucleophilic substitution reaction Methods 0.000 description 1
- 239000011022 opal Substances 0.000 description 1
- ZUOUZKKEUPVFJK-UHFFFAOYSA-N phenylbenzene Natural products C1=CC=CC=C1C1=CC=CC=C1 ZUOUZKKEUPVFJK-UHFFFAOYSA-N 0.000 description 1
- LPNYRYFBWFDTMA-UHFFFAOYSA-N potassium tert-butoxide Chemical compound [K+].CC(C)(C)[O-] LPNYRYFBWFDTMA-UHFFFAOYSA-N 0.000 description 1
- 239000000047 product Substances 0.000 description 1
- 239000002994 raw material Substances 0.000 description 1
- 229930195734 saturated hydrocarbon Natural products 0.000 description 1
- 238000012216 screening Methods 0.000 description 1
- 230000019491 signal transduction Effects 0.000 description 1
- 239000000779 smoke Substances 0.000 description 1
- 239000011734 sodium Substances 0.000 description 1
- PNGLEYLFMHGIQO-UHFFFAOYSA-M sodium;3-(n-ethyl-3-methoxyanilino)-2-hydroxypropane-1-sulfonate;dihydrate Chemical compound O.O.[Na+].[O-]S(=O)(=O)CC(O)CN(CC)C1=CC=CC(OC)=C1 PNGLEYLFMHGIQO-UHFFFAOYSA-M 0.000 description 1
- 239000007787 solid Substances 0.000 description 1
- 238000003756 stirring Methods 0.000 description 1
- 239000000126 substance Substances 0.000 description 1
- 239000000758 substrate Substances 0.000 description 1
- 125000000999 tert-butyl group Chemical group [H]C([H])([H])C(*)(C([H])([H])[H])C([H])([H])[H] 0.000 description 1
- CZDYPVPMEAXLPK-UHFFFAOYSA-N tetramethylsilane Chemical group C[Si](C)(C)C CZDYPVPMEAXLPK-UHFFFAOYSA-N 0.000 description 1
- 238000004704 ultra performance liquid chromatography Methods 0.000 description 1
- 230000009385 viral infection Effects 0.000 description 1
Classifications
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D413/00—Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and oxygen atoms as the only ring hetero atoms
- C07D413/14—Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and oxygen atoms as the only ring hetero atoms containing three or more hetero rings
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D401/00—Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom
- C07D401/02—Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing two hetero rings
- C07D401/06—Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing two hetero rings linked by a carbon chain containing only aliphatic carbon atoms
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D401/00—Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom
- C07D401/14—Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing three or more hetero rings
-
- Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
- Y02—TECHNOLOGIES OR APPLICATIONS FOR MITIGATION OR ADAPTATION AGAINST CLIMATE CHANGE
- Y02P—CLIMATE CHANGE MITIGATION TECHNOLOGIES IN THE PRODUCTION OR PROCESSING OF GOODS
- Y02P20/00—Technologies relating to chemical industry
- Y02P20/50—Improvements relating to the production of bulk chemicals
- Y02P20/55—Design of synthesis routes, e.g. reducing the use of auxiliary or protecting groups
Landscapes
- Chemical & Material Sciences (AREA)
- Organic Chemistry (AREA)
- Organic Low-Molecular-Weight Compounds And Preparation Thereof (AREA)
Abstract
The invention provides a preparation method of a 3CLpro inhibitor, which is prepared through an amide condensation reaction and an alkylation reaction. The route has higher yield, short reaction period and simple post-treatment, and is suitable for industrial production.
Description
The present application claims priority from chinese patent application 202210111456.X, having application date 2022, 1, 29, which is incorporated herein by reference in its entirety.
Technical Field
The invention belongs to the field of pharmaceutical chemistry, and in particular relates to a preparation method of a 3CLpro protease inhibitor.
Background
3CLPro (3C-like protease, also known as 3C-like protease) is the primary protease produced by the novel coronavirus (COVID-19, SARS-CoV-2), most of its functional proteins (non-structural proteins) are encoded by the ORF1ab gene, translated into a polyprotein (7096 aa) which is then cleaved by 3CLPro into a plurality of active proteins such as the viral replication protein RdRp. In addition, the protein may cleave the intracellular protein NEMO thereby inhibiting the activation of the interferon signaling pathway. Thus, inhibition of 3CLPro is effective in inhibiting viral infection and replication.
PCT/CN2022/117336 describes a 3CLPro protease inhibitor, wherein the compound (5-bromo-2- ((R) -1- (5- (methylamino) nicotinyl) piperidin-3-yl) amino) -3-nitrophenyl ((2R, 6S) -2, 6-dimethylmorpholinyl) methanone has good inhibition effect on SARS-CoV-23CLpro/Mpro protease, and has higher exposure and bioavailability in mice, and is expected to be developed into clinical medicines, the structure of which is shown as follows:
disclosure of Invention
The invention relates to a novel preparation method of a compound shown as a formula (I) and an intermediate thereof, which has the advantages of high reaction yield, high product purity, short reaction period, simple and convenient post-treatment and industrial application prospect.
The invention provides a preparation method of a compound shown in a formula (I) and a stereoisomer thereof, which is characterized in that,
a compound of formula (II) or a salt thereof in the presence of an acid-binding agent,
alkylation reaction with a compound of formula (III) to produce a compound of formula (I);
wherein R is as follows 1 Selected from H or C 1-4 An alkyl group;
R 2 is nitro;
R 3 and R is 4 Independently halogen.
Certain embodiments of the present invention, said R 1 Selected from H or methyl, R 2 Is nitro, R 3 And R is 4 Each independently selected from F or Br.
In certain embodiments of the present invention, the acid-binding agent is selected from one or more of triethylamine, N-diisopropylethylamine, N-methylmorpholine, pyridine, potassium carbonate, or sodium carbonate in any combination.
In certain embodiments of the present invention, the solvent used in the nucleophilic substitution reaction is selected from one or more of acetonitrile, ethanol, isopropanol, N-propanol, acetone, butanone, water, N-dimethylformamide or N, N-dimethylacetamide in any combination.
In certain embodiments of the present invention, the compound of formula (II): the molar ratio of the compound of formula (III) is 1:0.9-1: 2.
in certain embodiments of the present invention, the compound of formula (II): the molar ratio of the compound of formula (III) is 1:0.9-1:1.5.
In certain embodiments of the present invention, the compound of formula (II): the mol ratio of the acid binding agent is 1:1-1:5.
In certain embodiments of the present invention, the compound of formula (II): the mol ratio of the acid binding agent is 1:3-1:4.
In another aspect of the invention, a process for the preparation of a compound of formula (II) or a salt thereof,
the preparation method is characterized by comprising the steps of:
R 1 selected from H or C 1-4 Alkyl, preferably R 1 Selected from H or methyl.
In certain embodiments of the present invention, a process for the preparation of a compound of formula (II) or a salt thereof, characterized by comprising the steps of:
(iii) The compound of the formula (IV) and the formula (V) are subjected to condensation reaction under the condition of condensing agent and organic base to obtain a compound of the formula (VI);
(iv) The compound of formula (VI) is subjected to the action of a deprotection reagent to obtain a compound of formula (II) or a salt thereof;
the R is 5 Is an amino protecting group, R 1 Selected from H or C 1-4 Alkyl, preferably R 1 Selected from H or methyl.
Certain embodiments of the present invention, the R 5 Selected from the group consisting of benzyloxycarbonyl (Cbz), t-butyloxycarbonyl (Boc), benzyloxycarbonyl (Fmoc), p-methoxybenzyl (PMB), benzyl (Bn), trityl (Trt), p-toluenesulfonyl (Tos), phthaloyl (Pht).
In certain embodiments of the present invention, the condensing agent is selected from 2- (7-azobenzene benzotriazole) -N, N, N ', N' -tetramethyluronium Hexafluorophosphate (HATU), O-benzotriazol-tetramethyl uronium Hexafluorophosphate (HBTU), 6-chlorobenzotriazol-1, 3-tetramethyl uronium Hexafluorophosphate (HCTU), benzotriazol-1-yl-oxy-tripyrrolidinyl phosphate (PyBOP) or 1-ethyl- (3-dimethylaminopropyl) carbodiimide hydrochloride (EDCI).
In certain embodiments of the present invention, the organic base of step (i) is selected from one or more of triethylamine, N-diisopropylethylamine, or N-methylmorpholine in any combination.
In certain embodiments of the present invention, step (i) further comprises a catalyst selected from the group consisting of 4-N, N-lutidine (DMAP) and 1-hydroxybenzotriazole (HOBt).
In certain embodiments of the present invention, the compound of formula (IV) of step (i): the molar ratio of the compounds of formula (V) is 1:0.9 to 1:2.
In certain embodiments of the present invention, the compound of formula (IV) of step (i): the molar ratio of the compounds of the formula (V) is 1:0.9 to 1:1.5.
In certain embodiments of the present invention, the compound of formula (IV) of step (i): the molar ratio of the organic base is 1:2 to 1:4, preferably 1:3.
In certain embodiments of the present invention, the compound of formula (IV) of step (i): the molar ratio of the condensing agent is 1:1-1:3, preferably 1:1.5-1:3.
In certain embodiments of the present invention, the deprotecting reagent of step (ii) is selected from the group consisting of HCl/1, 4-dioxane, HCl/methanol, HCl/ethanol, trifluoroacetic acid, hydrazine hydrate, aqueous ammonia, aqueous methylamine solution, and R 5 Is tert-butoxycarbonyl (Boc) or phthaloyl (Pht), and the salt is hydrochloride or trifluoroacetate.
In another aspect of the present invention, a process for preparing a compound represented by formula (I) and stereoisomers thereof, characterized by comprising the steps of:
(a) The compound of the formula (IV) and the formula (V) are subjected to condensation reaction under the condition of condensing agent and organic base to obtain a compound of the formula (VI);
(b) The compound of formula (VI) is subjected to the action of a deprotection reagent to obtain a compound of formula (II) or a salt thereof;
(c) The compound of formula (II) or salt thereof and the compound of formula (III) are subjected to alkylation reaction in the presence of an acid binding agent to obtain the compound of formula (I).
In certain embodiments of the present invention, the process for preparing a compound of formula (III) comprises the steps of:
and (3) carrying out condensation reaction on the compound of the formula (VII) and the compound of the formula (VIII) under the conditions of a condensing agent and an organic base to obtain the compound of the formula (III).
Certain embodiments of the present invention, wherein the condensing agent is selected from 2- (7-azobenzene benzotriazole) -N, N' -tetramethyluronium Hexafluorophosphate (HATU), O-benzotriazol-tetramethyl uronium Hexafluorophosphate (HBTU), 6-chlorobenzotriazol-1, 3-tetramethyl uronium Hexafluorophosphate (HCTU), benzotriazol-1-yl-oxy-tripyrrolidinyl phosphate (PyBOP), or 1-ethyl- (3-dimethylaminopropyl) carbodiimide hydrochloride (EDCI).
Certain embodiments of the present invention, wherein the organic base is selected from one or more of triethylamine, N-diisopropylethylamine, or N-methylmorpholine or pyridine, in any combination.
Certain embodiments of the present invention, wherein the deprotecting reagent is selected from the group consisting of HCl/1, 4-dioxane, HCl/methanol, HCl/ethanol, trifluoroacetic acid, hydrazine hydrate, aqueous ammonia, and aqueous methylamine, and the salt is a hydrochloride salt or a trifluoroacetate salt.
In certain embodiments of the present invention, step (a) is performed in a solvent selected from the group consisting of one or more of N, N-dimethylformamide, N-dimethylacetamide, and N-methylpyrrolidone in any combination.
In certain embodiments of the present invention, step (a) is carried out at a reaction temperature of from-10℃to 40 ℃.
In certain embodiments of the present invention, the reaction solvent of step (b) is selected from one or more of 1, 4-dioxane, methanol, ethanol, or trifluoroacetic acid in any combination.
In certain embodiments of the present invention, step (b) is carried out at a reaction temperature of from 10℃to 40 ℃.
In certain embodiments of the present invention, step (c) is performed in a solvent selected from one or more of acetonitrile, ethanol, isopropanol, N-propanol, acetone, butanone, water, N-dimethylformamide, or N, N-dimethylacetamide in any combination.
In certain embodiments of the present invention, step (c) is carried out at a reaction temperature of 20 to 110 ℃, preferably 50 to 90 ℃.
In certain embodiments of the present invention, the step of preparing the compound of formula (III) is performed in a reaction solvent selected from any combination of one or more of N, N-dimethylformamide, N-dimethylacetamide or N-methylpyrrolidone.
In certain embodiments of the present invention, the reaction temperature for the preparation step of the compound of formula (III) is from-10℃to 40 ℃.
In certain embodiments of the present invention, the compound of formula (II) or salt thereof is selected from:
in certain embodiments of the present invention, the compound of formula (VI) is selected from:
interpretation and definition
The following terms and phrases used herein are intended to have the following meanings unless otherwise indicated. A particular term or phrase, unless otherwise specifically defined, should not be construed as being ambiguous or otherwise clear, but rather should be construed in a generic sense.
"alkyl" refers to a straight or branched saturated hydrocarbon group. Preferably C 1-6 More preferably C 1-4 Examples of alkyl groups include, but are not limited to, methyl, ethyl, n-propyl, isopropyl, n-butyl, isobutyl, t-butyl, n-pentyl, isopentyl, neopentyl, n-hexyl, and the like.
"halogen" means a fluorine, chlorine, bromine or iodine atom.
In the present invention, the amide reaction uses a condensing agent and an organic base, and the condensing agent includes, but is not limited to, carbodiimide condensing agents, carbonium salt condensing agents, phosphonium salt condensing agents, organophosphorus condensing agents, and the like.
The carbodiimide condensing agent is selected from Dicyclohexylcarbodiimide (DCC), diisopropylcarbodiimide (DIC) and 1-ethyl- (3-dimethylaminopropyl) carbodiimide hydrochloride (EDCI);
when the carbodiimide condensing agent is used, a catalyst or an activator is generally required to be added, wherein the catalyst or the activator is selected from 4-N, N-lutidine (DMAP), 1-hydroxybenzotriazole (HOBt) and the like;
the condensing agent of carbonium salts includes, but is not limited to, 2- (7-azobenzene triazole) -N, N' -tetramethyluronium Hexafluorophosphate (HATU), O-benzotriazol-tetramethyluronium Hexafluorophosphate (HBTU), 6-chlorobenzotriazol-1, 3-tetramethyluronium Hexafluorophosphate (HCTU), O- (7-azabenzotriazol-1-yl) -bis (tetrahydropyrrolyl) carbonium hexafluorophosphate (HAPyU), O- (benzotriazol-1-yl) -bis (tetrahydropyrrolyl) carbonium hexafluorophosphate (HBPyU), O- (benzotriazol-1-yl) -bis (dimethylamino) carbonium tetrafluoroborate (TBTU), O- (N-succinimidyl) -bis (dimethylamino) carbonium tetrafluoroborate (TSTU), and the like;
phosphonium salt condensing agents include, but are not limited to, benzotriazol-1-yl-oxy-tripyrrolidinylphosphine hexafluorophosphate (PyBOP), 7-azobenzotriazol-1-yl-oxy-tripyrrolidinylphosphine hexafluorophosphate (PyAOP), benzotriazol-1-yloxy-tris (dimethylamino) phosphonium hexafluorophosphate (BOP);
organophosphorus condensing agents include, but are not limited to, diphenylphosphoryl chloride (DPP-Cl), diethyl cyanophosphate (DECP), diphenyl azide phosphate (DPPA), thiodimethylphosphoryl azide (MPTA), bis (2-oxo-3-oxazolidinyl) phosphoryl chloride (BOP-Cl), and the like.
In the present invention, the amino protecting group includes, but is not limited to, benzyloxycarbonyl (Cbz), t-butyloxycarbonyl (Boc), benzyloxycarbonyl (Fmoc), p-methoxybenzyl (PMB), benzyl (Bn), trityl (Trt), p-toluenesulfonyl (Tos), phthaloyl (Pht), and the like.
In the present invention, deprotectionRefers to the deprotection of amino protecting groups, and the deprotection reagents include, but are not limited to Pd-C/H 2 、PdCl 2 Na/ammonia, trifluoroacetic acid (TFA), trifluoroacetic acid/dichloromethane, HCl/1, 4-dioxane, HCl/methanol, HCl/ethanol, concentrated hydrochloric acid, sulfuric acid, hydrobromic acid, hydrazine hydrate, ammonia, aqueous methylamine solution, and the like.
In the present invention, the acid-binding agent includes an organic base or an inorganic base, wherein the inorganic base includes, but is not limited to, potassium carbonate, sodium carbonate, potassium hydroxide, sodium hydroxide, lithium hydroxide, calcium hydroxide, sodium bicarbonate, and the like.
In the present invention, the organic base includes, but is not limited to, triethylamine (TEA), N-Diisopropylethylamine (DIPEA), N-methylmorpholine (NMM), pyridine (Py), ethylenediamine (EDA), monoethanolamine (MEA), 4-N, N-Dimethylaminopyridine (DMAP), 1, 8-diazabicyclo undec-7-ene (DBU), potassium tert-butoxide, sodium tert-butoxide, N-butyllithium, tert-butyllithium, sodium bis (trimethylsilyl) amide (NaHMDS), lithium Diisopropylamide (LDA), and the like.
The isomers of the present invention include geometric and stereoisomers such as cis-trans isomers, enantiomers, diastereomers, and racemic and other mixtures thereof, all of which are within the scope of the present invention.
The term "enantiomer" refers to stereoisomers that are mirror images of each other.
The term "diastereoisomer" refers to a stereoisomer of a molecule having two or more chiral centers and having a non-mirror image relationship between the molecules.
Unless otherwise indicated, with solid wedge bondsAnd wedge-shaped dotted bond->Representing the absolute configuration of a stereogenic center.
M in the 4M hydrogen chloride-1, 4-dioxane solution is the concentration unit, represents mol/L, and the hydrogen chloride is HCl.
Detailed Description
The present invention is described in detail below by way of examples, but is not meant to be limiting in any way. The present invention has been described in detail herein, and specific embodiments thereof are also disclosed, it will be apparent to those skilled in the art that various changes and modifications can be made to the specific embodiments of the invention without departing from the spirit and scope of the invention.
Summary of the laboratory instruments:
the structure of the compounds of the present invention is determined by Nuclear Magnetic Resonance (NMR) or/and liquid chromatography-mass spectrometry (LC-MS), or ultra-efficient liquid chromatography-mass spectrometry (UPLC-MS). NMR chemical shifts (δ) are given in parts per million (ppm). NMR was performed using Bruker Neo 400M or Bruker Ascend 400 nuclear magnetic instruments with deuterated dimethyl sulfoxide (DMSO-d 6) as the solvent, deuterated methanol (CD) 3 OD) and deuterated chloroform (CDCl) 3 ) Heavy water (D) 2 O), internal standard is Tetramethylsilane (TMS).
LC-MS was performed using Agilent 1260-6125B single quadrupole mass spectrometer for determination of LC-MS, column Welch Biomate column (C18, 2.7 μm, 4.6X150 mm) or waters H-Class SQD2, column Welch Ultimate column (XB-C18, 1.8 μm, 2.1X150 mm) mass spectrometer (ion source electrospray ionization).
Ultra-high performance liquid chromatography-mass spectrometry (UPLC-MS) was performed using a Waters UPLC H-class SQD mass spectrometer (electrospray ionization as the ion source).
HPLC determinations used Waters e2695-2998 or Waters ARC and Agilent 1260 or Agilent Poroshell HPH high performance liquid chromatography.
The thin layer chromatography silica gel plate uses smoke table Jiang You silica gel to develop GF254 silica gel plate of the limited company or GF254 silica gel plate of the new material of the limited company on the opal market, the specification adopted by TLC is 0.15 mm-0.20 mm, the preparation is 20 multiplied by 20cm, and column chromatography is generally used for forming 200-300 mesh silica gel as a carrier.
The starting materials in the examples of the present invention are known and commercially available or may be synthesized using or according to methods known in the art.
All reactions of the invention were carried out under continuous magnetic stirring under dry nitrogen or argon atmosphere, with the solvent being a dry solvent, and the reaction temperature being in degrees celsius or in degrees celsius, without specific description. Room temperature refers to 25±5 ℃ unless otherwise specified.
Example 1 preparation of the compound (5-bromo-2- ((R) -1- (5- (methylamino) nicotinyl) piperidin-3-yl) amino) -3-nitrophenyl ((2R, 6S) -2, 6-dimethylmorpholinyl) methanone of formula (I)
The first step: preparation of Compound I-2
Method 1:
compound I-1 (5 g,32.9 mmol) was dissolved in N, N-dimethylformamide (50 mL) at room temperature under nitrogen, cooled to 0deg.C, and N, N-diisopropylethylamine (12.7 g,98.4 mmol), 2- (7-azobenzotriazole) -N, N, N ', N' -tetramethylurea hexafluorophosphate (abbreviation HATU,18.7g,49.2 mmol) and (R) -3-Boc-aminopiperidine (9.9 g,49.4 mmol) were added sequentially. The reaction was stirred for a further 15 minutes at 0 ℃. After LCMS monitoring showed the disappearance of starting material, quench the reaction with water (150 mL), extract with ethyl acetate (50 ml×3), combine the organic phases, wash the organic phases with saturated brine (50 ml×2), dry over anhydrous sodium sulfate, filter, and concentrate under reduced pressure. The residue obtained was purified by column chromatography on silica gel (eluent: petroleum ether/ethyl acetate=4/1, volume ratio) to give compound I-2, (8.8 g, yield 80.1%, R 5 Boc).
MS(ESI)M/Z:335.3[M+H] + 。
1 H NMR(400MHz,DMSO):δ=8.09~8.47(m,4H);7.22~7.35(m,1H);3.60~3.75(m,4H);3.29~3.38(m,1H);2.80~3.07(m,4H);1.53~1.79(m,2H)。
Method 2:
under the condition of room temperature and nitrogen protection, the compound I-1 (5 g,32.9 mmol) is dissolved in N, N-dimethylacetamide (50 mL), the temperature is reduced to 10 ℃, and triethylamine (10.0 g,98.8 mmol) and O-benzotriazole-tetramethylurea hexafluorophosphoric acid are added in sequenceEsters (abbreviated HBTU,18.7g,49.3 mmol) and (R) -3-Boc-aminopiperidine (9.9 g,49.4 mmol). The reaction was stirred for a further 15 minutes at 10 ℃. After LCMS monitoring showed the disappearance of starting material, quench the reaction with water (150 mL), extract with ethyl acetate (50 ml×3), combine the organic phases, wash the organic phases with saturated brine (50 ml×2), dry over anhydrous sodium sulfate, filter, and concentrate under reduced pressure. The residue obtained was purified by column chromatography on silica gel (eluent: petroleum ether/ethyl acetate=4/1, volume ratio) to give compound I-2, (8.5 g, yield 79.2%, R 5 Boc).
Method 3:
compound I-1 (1 g,6.6 mmol) was dissolved in N-methylpyrrolidone (10 mL) at room temperature under nitrogen, followed by N-methylmorpholine (2.0 g,19.8 mmol), benzotriazol-1-yl-oxy-tripyrrolidinylphosphine hexafluorophosphate (abbreviation PyBOP,5.1g,9.8 mmol) and (R) -3-Boc-aminopiperidine (1.6 g,8.0 mmol). The reaction was stirred for a further 15 minutes at 30 ℃. After LCMS monitoring showed the disappearance of starting material, quench the reaction with water (30 mL), extract with ethyl acetate (10 ml×3), combine the organic phases, wash the organic phases with saturated brine (10 ml×2), dry over anhydrous sodium sulfate, filter, and concentrate under reduced pressure. The residue obtained was purified by column chromatography on silica gel (eluent: petroleum ether/ethyl acetate=4/1, volume ratio) to give compound I-2, (1.7 g, yield 77.3%, R 5 Boc).
Method 4:
compound I-1 (0.5 g,3.3 mmol) was dissolved in N, N-dimethylformamide (5 mL) at room temperature and cooled to-10deg.C, N-diisopropylethylamine (1.3 g,10.1 mmol), 1-hydroxybenzotriazole (abbreviated HOBt,0.7g,5.2 mmol), 1-ethyl- (3-dimethylaminopropyl) carbodiimide hydrochloride (abbreviated EDCI,1.0g,5.2 mmol) and (R) -3-Boc-aminopiperidine (0.6 g,3.0 mmol) were added sequentially under nitrogen. The reaction was stirred for a further 15 minutes at-10 ℃. After LCMS monitoring showed the disappearance of starting material, quench the reaction with water (15 mL), extract with ethyl acetate (10 ml×3), combine the organic phases, wash the organic phases with saturated brine (10 ml×2), dry over anhydrous sodium sulfate, filter, and concentrate under reduced pressure. The residue obtained is purified by column chromatography on silica gel (eluent: petroleum ether/acetic acid)Ethyl ester=4/1, volume ratio) to give compound I-2, (0.8 g, yield 72.8%, R 5 Boc).
Method 5:
compound I-1 (1.0 g,6.6 mmol) was dissolved in N, N-dimethylformamide (10 mL) at room temperature under nitrogen, cooled to 0deg.C, and N, N-diisopropylethylamine (2.6 g,20 mmol), 2- (7-azobenzotriazole) -N, N, N ', N' -tetramethylurea hexafluorophosphate (abbreviated HATU,3.8g,10 mmol) and 3- (R) -piperidylphthalimide (2.2 g,9.6 mmol) were added sequentially. The reaction was stirred for a further 15 minutes at 0 ℃. After LCMS monitoring showed the disappearance of starting material, quench the reaction with water (30 mL), extract with ethyl acetate (10 ml×3), combine the organic phases, wash the organic phases with saturated brine (10 ml×2), dry over anhydrous sodium sulfate, filter, and concentrate under reduced pressure. The residue obtained was purified by column chromatography on silica gel (eluent: petroleum ether/ethyl acetate=4/1, volume ratio) to give compound I-2 (1.9 g, yield 79.3%, R) 5 Pht).
And a second step of: preparation of Compound I-3
Method 1:
compound I-2 (8 g,23.9mmol, R) is purged with nitrogen at room temperature 5 Boc) was dissolved in 4M hydrogen chloride-1, 4-dioxane solution (80 mL) and stirred for 1 hour. After LCMS monitoring shows the disappearance of the starting material, the reaction solution was concentrated by distillation under reduced pressure, methyl tert-butyl ether (120 mL) was added, stirred for crystallization, suction filtration to give a filter cake, and oven-drying to give the hydrochloride salt of compound I-3 (5.8 g, 89.5% yield).
MS(ESI)M/Z:235.2[M+H-HCl] + 。
1 H NMR(400MHz,DMSO):δ=7.96(s,2H);7.18(s,1H);6.96~6.99(d,1H);3.50~3.65(m,2H);2.81~2.98(m,4H);1.99(s,3H);1.45(s,9H);1.38(s,4H)。
Method 2:
compound I-2 (1 g,3.0mmol, R) is reacted under nitrogen 5 Boc) was dissolved in methanol hydrogen chloride (10 mL) and stirred at 30℃for 1 hour. After LCMS monitoring shows that the raw materials disappear, the reaction solution is distilled and concentrated under reduced pressure, methyl tert-butyl ether (20 mL) is added, stirred for crystallization and suction filtration is carried out to obtainTo the cake, the hydrochloride salt of compound I-3 (0.70 g, 86.5% yield) was obtained by drying.
Method 3:
compounds of formula I-2 (1 g,3.0mmol, R) 5 Boc) was dissolved in ethanol hydrogen chloride (10 mL) and stirred at 10deg.C for 1 hour. After LCMS monitoring shows the disappearance of the starting material, the reaction solution was concentrated by distillation under reduced pressure, methyl tert-butyl ether (20 mL) was added, stirred for crystallization, suction filtration to give a filter cake, and oven-drying to give the hydrochloride salt of compound I-3 (0.72 g, 89.0% yield).
Method 4:
compound I-2 (1 g,3.0mmol, R) is reacted under nitrogen 5 Boc) was dissolved in trifluoroacetic acid (10 mL) and stirred at 40℃for 1 hour. After LCMS monitoring shows the disappearance of the starting material, the reaction solution was concentrated by distillation under reduced pressure, methyl tert-butyl ether (20 mL) was added, stirred for crystallization, suction filtration to give a filter cake, which was dried to give the trifluoroacetate salt of Compound I-3 (0.84 g, yield 80.6%).
Method 5:
compound I-2 (1 g,2.6mmol, R) is reacted under nitrogen 5 Pht), 10mL of methanol was added, hydrazine hydrate (0.3 mL) was added, and the mixture was stirred at 10 ℃ for 3 hours. After the disappearance of the starting material by LCMS monitoring, the reaction solution was concentrated by distillation under reduced pressure, ethyl acetate (20 mL) was added, and dissolved by stirring, the organic phase was washed with saturated brine (10 ml×2), dried over anhydrous sodium sulfate, filtered, concentrated under reduced pressure, and distilled under reduced pressure to give compound I-3 (0.54 g, yield 88.1%).
Method 6:
compounds of formula I-2 (1 g,2.6mmol, R) 5 Pht), 10mL of aqueous ammonia was added thereto, and the mixture was stirred at 30℃for 3 hours. After the disappearance of the starting material by LCMS, the reaction solution was concentrated by distillation under reduced pressure, ethyl acetate (20 mL) was added, the solution was separated, the organic phase was washed with saturated brine (10 ml×2), dried over anhydrous sodium sulfate, filtered, concentrated under reduced pressure, and distilled under reduced pressure to give compound I-3 (0.50 g, yield 81.6%).
Method 7:
compound I-2 (1 g,2.6mmol, R) is reacted under nitrogen 5 Pht), 10mL of aqueous methylamine solution was added thereto, and stirred at 40℃for 3 hoursWhen (1). After LCMS monitoring showed the disappearance of starting material, the reaction solution was concentrated by distillation under reduced pressure, ethyl acetate (20 mL) was added, the solution was separated, the organic phase was washed with saturated brine (10 mL. Times.2), dried over anhydrous sodium sulfate, filtered, and concentrated under reduced pressure. Distillation under the reduced pressure gave compound I-3 (0.52 g, yield 84.9%).
And a third step of: preparation of Compound I-5
Method 1:
5-bromo-2-fluoro-3-nitrobenzoic acid (compound I-4,9g,34.1 mmol) was dissolved in N, N-dimethylformamide (90 mL) at room temperature under nitrogen, cooled to 0 ℃, N-diisopropylethylamine (13.2 g,102.1 mmol), (2- (7-azobenzotriazol) -N, N' -tetramethylurea hexafluorophosphate (abbreviation HATU,18g,47.3 mmol) and (2 r,6 s) -2, 6-dimethylmorpholine (4.7 g,40.8 mmol) were added in sequence, the reaction system was stirred continuously at 0 ℃ for 15 minutes, LCMS monitoring showed that the starting material disappeared, water (200 mL) was added to the reaction mixture was quenched, the mixture was extracted with ethyl acetate (100 ml×3), the organic phase was combined, washed with saturated brine (100 ml×2), dried over anhydrous sodium sulfate, filtered, and concentrated under reduced pressure, the resulting residue was purified by column chromatography (eluent: ethyl acetate=4.7/1 vol.% (9.9.9% yield of compound I).
MS(ESI)M/Z:361.0[M+H] + 。
1H NMR(400MHz,CDCl3):δ=8.25~8.27(m,1H);7.82(s,1H);4.55~4.60(m,1H);3.67(s,2H);3.20~3.24(m,1H);2.95(s,1H);2.58~2.64(t,1H);1.28~1.30(d,3H);1.16~1.18(d,2H)。
Method 2:
5-bromo-2-fluoro-3-nitrobenzoic acid (Compound I-4,1.0g,3.8 mmol) was dissolved in N, N-dimethylacetamide (10 mL) at room temperature under nitrogen, cooled to 10℃and triethylamine (1.1 g,10.9 mmol), O-benzotriazol-tetramethylurea hexafluorophosphate (abbreviated HBTU,2.2g,5.8 mmol) and (2R, 6S) -2, 6-dimethylmorpholine (0.5 g,4.3 mmol) were added sequentially. The reaction was stirred for a further 15 minutes at 10 ℃. After LCMS monitoring showed the disappearance of starting material, quench the reaction mixture by adding water (20 mL), extract the mixture with ethyl acetate (10 mL. Times.3), combine the organic phases, wash the organic phases with saturated brine (10 mL. Times.2), dry over anhydrous sodium sulfate, filter, and concentrate under reduced pressure. The residue was purified by column chromatography on silica gel (eluent: petroleum ether/ethyl acetate=4/1, volume ratio) to give compound I-5 (1.0 g, yield 73.1%).
Method 3:
5-bromo-2-fluoro-3-nitrobenzoic acid (Compound I-4,1.0g,3.8 mmol) was dissolved in N-methylpyrrolidinone (10 mL) at room temperature under nitrogen, cooled to 20℃and N-methylmorpholine (1.1 g,10.9 mmol), benzotriazol-1-yl-oxy-tripyrrolidinylphosphine hexafluorophosphate (abbreviation PyBOP,3.0g,5.8 mmol) and (2R, 6S) -2, 6-dimethylmorpholine (0.5 g,4.3 mmol) were added sequentially. The reaction was stirred for a further 15 minutes at 20 ℃. After LCMS monitoring showed the disappearance of starting material, quench the reaction mixture by adding water (20 mL), extract the mixture with ethyl acetate (10 mL. Times.3), combine the organic phases, wash the organic phases with saturated brine (10 mL. Times.2), dry over anhydrous sodium sulfate, filter, and concentrate under reduced pressure. The residue was purified by column chromatography on silica gel (eluent: petroleum ether/ethyl acetate=4/1, volume ratio) to give compound I-5 (1.1 g, yield 80.4%).
Method 4:
5-bromo-2-fluoro-3-nitrobenzoic acid (Compound I-4,1g,3.8 mmol) was dissolved in N, N-dimethylformamide (10 mL) under nitrogen, and N, N-diisopropylethylamine (1.5 g,11.6 mmol), 1-hydroxybenzotriazole (abbreviated HOBt,0.8g,5.9 mmol), 1-ethyl- (3-dimethylaminopropyl) carbodiimide hydrochloride (abbreviated EDCI,1.1g,5.7 mmol) and (2R, 6S) -2, 6-dimethylmorpholine (0.5 g,4.3 mmol) were added sequentially. The reaction was stirred for a further 15 minutes at 30 ℃. After LCMS monitoring showed the disappearance of starting material, quench the reaction mixture by adding water (20 mL), extract the mixture with ethyl acetate (10 mL. Times.3), combine the organic phases, wash the organic phases with saturated brine (10 mL. Times.2), dry over anhydrous sodium sulfate, filter, and concentrate under reduced pressure. The residue was purified by column chromatography on silica gel (eluent: petroleum ether/ethyl acetate=4/1, volume ratio) to give compound I-5 (1.0 g, yield 73.1%).
Fourth step: preparation of Compound (I)
Method 1:
compound I-3 (5.8 g,21.4 mmol) was dissolved in acetonitrile (60 mL) at room temperature under nitrogen protection, compound I-5 (9.3 g,25.7 mmol) and N, N-diisopropylethylamine (8.3 g,64.2 mmol) were added sequentially, the temperature was raised to 80 ℃, the reaction was stirred for 1h, after LCMS monitoring showed that compound I-3 disappeared, water (200 mL) was added to the reaction solution to quench, the mixture was extracted with ethyl acetate (100 mL. Times.3 times), the organic phases were combined, and the organic phase was washed with saturated brine (100 mL. Times.2 times). Then dried over anhydrous sodium sulfate, filtered, and concentrated under reduced pressure. The obtained residue was purified by silica gel column chromatography (eluent: dichloromethane/methanol=30/1, volume ratio) to obtain compound (I) (11.0 g, yield 89.2%).
MS(ESI)M/Z:575.2[M+H] + 。
1H NMR(400MHz,DMSO-d6)δ=8.27(s,1H),7.67~8.00(m,4H),6.81(s,1H),6.27(s,1H),4.39(s,1H),3.08~3.91(m,10H),2.50~2.86(m,3H),1.34~1.93(m,4H),1.11~1.25(m,3H),1.03(s,3H)。
Method 2:
compound I-3 (1.0 g,3.7 mmol) was dissolved in ethanol (10 mL) at room temperature under nitrogen protection, compound I-5 (2.0 g,5.5 mmol) and triethylamine (1.1 g,10.9 mmol) were added sequentially, the temperature was raised to 50℃and the reaction was stirred for 1h, after LCMS monitoring showed that compound I-3 disappeared, water (20 mL) was added to the reaction solution to quench, the mixture was extracted with ethyl acetate (10 mL. Times.3 times), the organic phases were combined, and the organic phase was washed with saturated brine (10 mL. Times.2 times). Then dried over anhydrous sodium sulfate, filtered, and concentrated under reduced pressure. The resulting residue was purified by silica gel column chromatography (eluent: dichloromethane/methanol=30/1, volume ratio) to give compound (I) (1.6 g, yield 75.3%).
Method 3:
compound I-3 (1.0 g,3.7 mmol) was dissolved in acetone (10 mL) at room temperature under nitrogen protection, compound I-5 (1.6 g,4.4 mmol) and N-methylmorpholine (1.1 g,10.9 mmol) were added sequentially, the temperature was raised to 90℃and the reaction was stirred for 1h, LCMS monitoring showed that compound I-3 disappeared, then water (20 mL) was added to the reaction solution to quench, the mixture was extracted with ethyl acetate (10 mL. Times.3 times), the organic phases were combined, and the organic phase was washed with saturated brine (10 mL. Times.2 times). Then dried over anhydrous sodium sulfate, filtered, and concentrated under reduced pressure. The obtained residue was purified by silica gel column chromatography (eluent: dichloromethane/methanol=30/1, volume ratio) to obtain compound (I) (1.9 g, yield 89.4%).
Method 4:
compound I-3 (trifluoroacetate salt, 1.0g,3.0 mmol) was added to purified water (10 mL) at room temperature under nitrogen, compound I-5 (1.6 g,4.4 mmol) and N, N-diisopropylethylamine (1.4 g,10.8 mmol) were added sequentially, the temperature was raised to 80 ℃, the reaction was stirred for 1h, after LCMS monitoring showed that compound I-3 disappeared, water (20 mL) was added to the reaction solution, extracted with ethyl acetate (10 mL. Times.3 times), the organic phases were combined, and the organic phase was washed with saturated brine (10 mL. Times.2 times). Then dried over anhydrous sodium sulfate, filtered, and concentrated under reduced pressure. The resulting residue was purified by silica gel column chromatography (eluent: dichloromethane/methanol=30/1, volume ratio) to give compound (I) (1.2 g, yield 72.6%).
Method 5:
compound I-3 (1.0 g,3.7 mmol) was added to N, N-dimethylformamide (10 mL) under nitrogen at room temperature, compound I-5 (1.2 g,3.3 mmol) and N, N-diisopropylethylamine (1.4 g,10.8 mmol) were added sequentially, the temperature was raised to 80℃and the reaction was stirred for 1h, after LCMS monitoring showed that compound I-3 disappeared, water (20 mL) was added to the reaction solution, extracted with ethyl acetate (10 mL. Times.3 times), the organic phases were combined, and the organic phase was washed with saturated brine (10 mL. Times.2 times). Then dried over anhydrous sodium sulfate, filtered, and concentrated under reduced pressure. The resulting residue was purified by silica gel column chromatography (eluent: dichloromethane/methanol=30/1, volume ratio) to give compound (I) (1.5 g, yield 70.6%).
Comparative example
Preparation of Compound I-2
5-methylamino nicotinic acid (compound I-1,1.0g,6.6 mmol) was added to 10ml of thionyl chloride, reacted at 50℃for 3h, and then reduced to give 5-methylamino nicotinoyl chloride; 5-Methylaminonicotinoyl chloride was added to 5mL of tetrahydrofuran, a mixed solution of (R) -3-Boc-aminopiperidine (2.0 g,10.0 mmol)/triethylamine (2.0 g,19.8 mmol)/5 mL of tetrahydrofuran was added dropwise, the TLC detection reaction was not performed after 3 hours, the reaction solution was added to 20mL of purified water, extracted with ethyl acetate (10 mL. Times.3 times), the organic phases were combined, the organic phases were washed with saturated brine (10 mL. Times.2 times), dried over anhydrous sodium sulfate, filtered, and concentrated under reduced pressure. The residue was purified by column chromatography on silica gel (eluent: petroleum ether/ethyl acetate=4/1, volume ratio) to give compound I-2, (0.24 g, yield 10.9%).
Preparation of Compound I-5
5-bromo-2-fluoro-3-nitrobenzoic acid (compound I-4,1.0g,3.8 mmol) was added to 10mL thionyl chloride, reacted at 50℃for 3h, and then reduced to give 5-bromo-2-fluoro-3-nitrobenzoyl chloride; 5-bromo-2-fluoro-3-nitrobenzoyl chloride was added to 5mL of tetrahydrofuran, and (2R, 6S) -2, 6-dimethylmorpholine (0.5 g,4.3 mmol)/triethylamine (1.2 g,11.8 mmol)/5 mL of a tetrahydrofuran mixed solution was added dropwise, after 3 hours of reaction, the TLC detection reaction was no longer carried out, the reaction solution was added to 20mL of purified water, extracted with ethyl acetate (10 mL. Times.3 times), the organic phases were combined, the organic phases were washed with saturated brine (10 mL. Times.2 times), dried over anhydrous sodium sulfate, filtered, and concentrated under reduced pressure. The residue was purified by column chromatography on silica gel (eluent: petroleum ether/ethyl acetate=4/1, volume ratio) to give compound I-5 (0.12 g, yield 8.8%).
Biological test evaluation
Test example 1: evaluation of the inhibitory Effect of Compounds of formula (I) on SARS-CoV-23CLpro/Mpro target
The experiment adopts fluorescence resonance energy transfer method to detect SARS-CoV-23CLpro/Mpro protease activity, and obtains half inhibition concentration IC of compound to SARS-CoV-23CLpro/Mpro protease 50 。
A novel coronavirus Mpro/3CLpro inhibitor screening kit (P0315M) was purchased from Beyotime company.
Preparing enzyme solution by using reaction buffer solution, adding 4 in each well9.5. Mu.L of enzyme solution; 49.5. Mu.L of reaction buffer was added to Min wells. Compound detection IC 50 The final concentration of the test was 10. Mu.M, 3-fold dilution, 10 concentrations, each concentration set up a multiplex well test. The test compound was diluted to 200-fold final concentration and added to 384-well reaction plates using a D300e (TECAN) ultra microscale sampler with a 250nL gradient of diluted test compound. 250nL of 100% DMSO was transferred in both Max wells and Min wells. Incubate on ice for 10 minutes. 250nL of substrate solution was added to each well using D300e (TECAN). The reaction plate was centrifuged at 1000rpm for 1min and the fluorescent signal was continuously read for 30min using an Envision microplate reader (PerkinElmer). Data analysis using GraphPad Prism 8 software, calculation of IC for compounds 50 。
IC of the compound of formula (I) as determined experimentally 50 The value is 26nM, and has good inhibition activity on SARS-CoV-23CLpro/Mpro protease.
Test example 2: in vivo pharmacokinetic experiments in CD1 mice
The in vivo pharmacokinetic behavior of the compounds of the invention on male CD1 mice was studied using male CD1 mice as test animals.
Test article: control compounds and compounds of formula (I).
Test animals
Species: male CD1 mice (3/group)
Grade: SPF stage
Weight of: about 20 g to 30g
Age: for 6 to 8 weeks
The source is as follows: weitong Lihua (Chinese character)
The test solution was administered to male CD1 mice by gavage at a dose of 10mg/kg and a volume of 10mL/kg.
Preparing a test solution: the test sample is dissolved by solvent (10% DMSO+50% PEG400+40% purified water), and DMSO, PEG400 and purified water are sequentially added during preparation.
Control group: the structural formula of the CN 113072497A patent compound 2 is as follows:
experimental group: a compound of formula (I).
About 0.025 to 0.03mL of whole blood (anticoagulated with EDTA-K2) was collected from the dorsum veins of the mice at the set blood collection time points before (0 h) and after (0.25 h), 0.5h,1h,2h,4h,8h,24h, respectively, and placed under wet ice conditions, and centrifuged at 4000g centrifugal force at 4℃for 5min within 30min after collection, and plasma was separated and transferred to a test tube.
The pharmacokinetic parameters were calculated using WinNonlin (Phoenix. TM., version 6.1) and are shown in tables 1 and 2.
TABLE 1 pharmacokinetic parameters for intravenous administration in CD1 mice
Table 2 pharmacokinetic parameters for oral administration in CD1 mice
Remarks: NA represents no corresponding data.
The results show that: compared with a control group, the compound of the formula (I) has higher exposure and bioavailability in mice and good pharmacokinetic property.
Test example 3: in vivo pharmacokinetic experiments in cynomolgus monkeys
The pharmacokinetic behavior of the compounds of formula (I) in vivo plasma of cynomolgus monkeys was studied by oral administration at 10mg/kg in male cynomolgus monkeys as the subject animals.
1. Test protocol
1.1 test article:
a compound of formula (I).
1.2 test animals
Basic information of animals
Species: macaca fascicularis monkey
Grade: common grade
Quantity: experiment with 18 cynomolgus monkeys (Male) for administration
Weight of: about 2.5 kg to about 4.5kg
Age: about 3 to 5 years old
The source is as follows: from Huazhen animal farm (common partner)
1.3 administration:
9 male cynomolgus monkeys, 3 animals/group, 3 total groups. The animals were fasted for 12 hours before administration, and the test solution (10 mg/kg) was administered by gavage, with a volume of administration of 2.5mL/kg.
Preparing a test solution: the test sample is dissolved by 10% DMSO+50% PEG400+40% purified water, and DMSO, PEG400 and purified water are sequentially added during preparation.
1.4 sample collection:
before (0 min), after (11) 0.25h,0.5h,1h,2h,4h,6h,8h,12h,24h and 48h, respectively.
Collecting blood from the vein of monkey hind limb at about 1.5mL according to the set blood collection time point, placing under wet ice condition, and collecting
Centrifuging at 1700g for 1.5h, and centrifuging at 4deg.C for 10min. After centrifugation, plasma was taken and added to the test tube. The plasma samples can be stored in a refrigerator below-20 ℃ within 2 hours after centrifugation.
2. Experimental results and analysis
The main pharmacokinetic parameters were calculated using WinNonlin 8.1.0.3530, and the results showed that the compound of formula (I) had good pharmacokinetic properties.
Table 3 pharmacokinetic parameters for oral administration of cynomolgus monkeys
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Claims (23)
1. A process for producing a compound represented by the formula (I) and stereoisomers thereof, which comprises the steps of,
a compound of formula (II) or a salt thereof in the presence of an acid-binding agent,
alkylation reaction with a compound of formula (III) to produce a compound of formula (I);
wherein R is as follows 1 Selected from H or C 1-4 An alkyl group;
R 2 is nitro;
R 3 and R is 4 Independently halogen.
2. The method of claim 1, wherein R 1 Selected from H or methyl, R 2 Is nitro, R 3 And R is 4 Independently selected from F or Br.
3. The method according to claim 1 or 2, wherein the acid-binding agent is selected from one or more of triethylamine, N-diisopropylethylamine, N-methylmorpholine, pyridine, potassium carbonate or sodium carbonate.
4. The process according to claim 1 or 2, wherein the solvent used in the alkylation reaction is selected from one or more of acetonitrile, ethanol, isopropanol, N-propanol, acetone, butanone, water, N-dimethylformamide or N, N-dimethylacetamide.
5. The method according to claim 1 or 2, wherein the compound of formula (II): the molar ratio of the compound of formula (III) is 1:0.9-1: 2, preferably, said compound of formula (II): the molar ratio of the compound of formula (III) is 1:0.9-1:1.5.
6. A process for the preparation of a compound of formula (II) or a salt thereof,
the preparation method is characterized by comprising the steps of:
R 1 the definition of claim 1 or 2.
7. The method according to claim 6, characterized by the steps of:
(i) The compound of the formula (IV) and the formula (V) are subjected to condensation reaction under the condition of condensing agent and organic base to obtain a compound of the formula (VI);
(ii) The compound of formula (VI) is subjected to the action of a deprotection reagent to obtain a compound of formula (II) or a salt thereof;
the R is 5 Is an amino protecting group, R 1 The definition of claim 1 or 2.
8. The process of claim 7 wherein the condensing agent is selected from 2- (7-azobenzene triazole) -N, N' -tetramethyl urea Hexafluorophosphate (HATU), O-benzotriazole-tetramethyl urea Hexafluorophosphate (HBTU), 6-chlorobenzotriazole-1, 3-tetramethyl urea Hexafluorophosphate (HCTU), benzotriazol-1-yl-oxy-tripyrrolidinylphosphine (PyBOP), or 1-ethyl- (3-dimethylaminopropyl) carbodiimide hydrochloride (EDCI).
9. The process of claim 7, wherein the organic base of step (i) is selected from one or more of triethylamine, N-diisopropylethylamine, or N-methylmorpholine in any combination.
10. The process of claim 7 wherein step (i) further comprises a catalyst selected from the group consisting of 4-N, N-lutidine (DMAP) and 1-hydroxybenzotriazole (HOBt).
11. The method of claim 7, wherein the compound of formula (IV) of step (i): the molar ratio of the compounds of the formula (V) is from 1:0.9 to 1:2, preferably,
a compound of formula (IV) of step (i): the molar ratio of the compounds of formula (V) is: 1:0.9-1:1.5.
12. The process according to claim 7, wherein the deprotecting reagent of step (ii) is selected from the group consisting of HCl/1, 4-dioxane, HCl/methanol, HCl/ethanol, trifluoroacetic acid, hydrazine hydrate, aqueous ammonia or aqueous methylamine solution, and R is 5 Selected from tert-butoxycarbonyl (Boc) or phthaloyl (Pht), said salt being a hydrochloride or trifluoroacetate salt.
13. The preparation method of the compound shown in the formula (I) and the stereoisomer thereof is characterized by comprising the following steps:
(a) The compound of the formula (IV) and the formula (V) are subjected to condensation reaction under the condition of condensing agent and organic base to obtain a compound of the formula (VI);
(b) The compound of formula (VI) is subjected to the action of a deprotection reagent to obtain a compound of formula (II) or a salt thereof;
(c) The compound of formula (II) or salt thereof and the compound of formula (III) are subjected to alkylation reaction in the presence of an acid binding agent to obtain the compound of formula (I).
14. The process according to claim 13, the process for the preparation of the compound of formula (III) comprising the steps of:
and (3) carrying out condensation reaction on the compound of the formula (VII) and the compound of the formula (VIII) under the conditions of a condensing agent and an organic base to obtain the compound of the formula (III).
15. The process according to claim 13 or 14, wherein the condensing agent is selected from 2- (7-azobenzotriazole) -N, N' -tetramethylurea Hexafluorophosphate (HATU), O-benzotriazol-tetramethylurea Hexafluorophosphate (HBTU), 6-chlorobenzotriazol-1, 3-tetramethylurea Hexafluorophosphate (HCTU), benzotriazol-1-yl-oxy-tripyrrolidinylphosphine (PyBOP) or 1-ethyl- (3-dimethylaminopropyl) carbodiimide hydrochloride (EDCI).
16. The process according to claim 13 or 14, wherein the organic base is selected from one or more of triethylamine, N-diisopropylethylamine or N-methylmorpholine or pyridine in any combination.
17. The method of claim 13, wherein the deprotecting reagent is selected from the group consisting of HCl/1, 4-dioxane, HCl/methanol, HCl/ethanol, trifluoroacetic acid, hydrazine hydrate, aqueous ammonia, aqueous methylamine, and the salt is a hydrochloride salt or a trifluoroacetate salt.
18. The process of claim 15, wherein step (a) is performed in a solvent selected from the group consisting of N, N-dimethylformamide, N-dimethylacetamide, and N-methylpyrrolidone, in any combination thereof.
19. The process of claim 13, wherein step (b) is performed in a solvent selected from the group consisting of 1, 4-dioxane, methanol, ethanol, and trifluoroacetic acid.
20. The process of claim 13, wherein step (c) is performed in a reaction solvent selected from one or more of acetonitrile, ethanol, isopropanol, N-propanol, acetone, butanone, water, N-dimethylformamide, or N, N-dimethylacetamide in any combination.
21. The process according to claim 14, wherein the reaction solvent is selected from the group consisting of N, N-dimethylformamide, N-dimethylacetamide and N-methylpyrrolidone.
22. The compound of formula (II) or salt thereof is selected from:
23. the compound of formula (VI) is selected from:
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