CN115975963B - Methods and applications of whole-cell catalytic synthesis of hydroxylated flavonoids using Escherichia coli P450 enzyme - Google Patents
Methods and applications of whole-cell catalytic synthesis of hydroxylated flavonoids using Escherichia coli P450 enzyme Download PDFInfo
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- 239000002676 xenobiotic agent Substances 0.000 description 1
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Abstract
Description
技术领域Technical field
本发明涉及利用大肠杆菌P450酶全细胞催化合成羟基化黄酮化合物的方法及应用,属于基因工程技术领域。The invention relates to a method and application of whole-cell catalytic synthesis of hydroxylated flavonoid compounds using Escherichia coli P450 enzyme, and belongs to the technical field of genetic engineering.
背景技术Background technique
细胞色素P450酶是一类以血红素为辅基的酶,广泛存在于动植物、古生菌、细菌和真核生物等生物体内。在哺乳动物如人体内,P450酶广泛参与异源物质降解、解毒作用、药物代谢以及甾体类激素和维生素的合成。在植物中,P450酶能够催化一系列天然产物(如:萜类、多烯类、糖肽类、生物碱类、脂肪酸类、类固醇类)发生区域或立体的羟基化、环氧化、脱烷基、脱卤素等氧化催化反应。由于P450酶具有广泛的底物谱和催化反应的多样性,大量的P450酶逐渐被应用到微生物制药领域用来合成有价值的天然产物或者药物。以往的研究多采用胞外酶促催化方法,该方法往往需要对P450酶及辅酶进行纯化,而且需要额外添加昂贵的辅因子NAD(P)H和辅因子循环系统,催化合成成本较高。与胞外酶促催化方法相比,全细胞催化方法是催化成本低的替代方法。Cytochrome P450 enzymes are a type of enzyme that uses heme as a prosthetic group and are widely found in animals, plants, archaea, bacteria, eukaryotes and other organisms. In mammals such as humans, P450 enzymes are widely involved in the degradation of xenobiotics, detoxification, drug metabolism, and the synthesis of steroid hormones and vitamins. In plants, P450 enzymes can catalyze the regional or three-dimensional hydroxylation, epoxidation, and dealkylation of a series of natural products (such as terpenes, polyenes, glycopeptides, alkaloids, fatty acids, and steroids). Oxidative catalytic reactions such as base and dehalogenation. Because P450 enzymes have a wide substrate spectrum and diversity of catalytic reactions, a large number of P450 enzymes have been gradually applied to the field of microbial pharmaceuticals to synthesize valuable natural products or drugs. Previous studies mostly used extracellular enzymatic catalysis methods, which often require the purification of P450 enzymes and coenzymes, and the addition of expensive cofactor NAD(P)H and cofactor recycling systems, resulting in high catalytic synthesis costs. Compared with extracellular enzymatic catalytic methods, whole-cell catalytic methods are a low-cost catalytic alternative.
黄酮类化合物是一类广泛存在植物中的多酚化合物,它们具有基本母核2-苯基色原酮(C6-C3-C6结构),按照母体结构可以分为黄酮、黄酮醇、二氢黄酮、二氢黄酮醇、异黄酮等(图1)。黄酮类化合物具有抗氧化、抗病毒、抗肿瘤、抗菌等多种生物活性,在食品医药领域应用广泛。然而,黄酮化合物水溶性差且不稳定限制了其在医药上的应用。羟基化反应不仅可以提高黄酮类化合物溶解性和稳定性,还可以增强其生物活性和丰富黄酮类化合物的种类。Flavonoids are a class of polyphenolic compounds widely found in plants. They have a basic parent core, 2-phenylchromone (C6-C3-C6 structure). According to the parent structure, they can be divided into flavones, flavonols, dihydroflavones, Dihydroflavonols, isoflavones, etc. (Figure 1). Flavonoids have various biological activities such as antioxidant, antiviral, antitumor, and antibacterial, and are widely used in the field of food and medicine. However, the poor water solubility and instability of flavonoids limit their medicinal applications. The hydroxylation reaction can not only improve the solubility and stability of flavonoids, but also enhance their biological activity and enrich the types of flavonoids.
与化学羟基化反应相比,生物催化羟基化反应是一种获得羟基化黄酮化合物环境友好型的方法。大肠杆菌是重组蛋白最常用的表达系统和高效的全细胞转化系统,而参与羟基化反应的P450酶在原核生物中可溶性差、表达困难。目前发现在大肠杆菌中表达CYP107P2(Pandey et al.,Enzyme Microb.Technol.48(4-5),386-392.2011)、CYP107Y1(Pandey et al.,Enzyme Microb.Technol.48(4-5),386-392.2011)、P450BM3(Chu etal.,Microb.Cell Fact.15(1),135.2016)、CYP105D7(Liu et al.,J.Mol.Catal.B:Enzym.132,91-97.2016)和CYP105A5(Subedi et al.,Catalysts 12(10),1157.2022)可以对特定的黄酮化合物进行羟基化,但是存在转化率低等问题。因此,开发能在原核生物中高效表达的P450酶用来合成黄酮类化合物有着重要的意义。Compared with chemical hydroxylation, biocatalytic hydroxylation is an environmentally friendly method to obtain hydroxylated flavonoids. Escherichia coli is the most commonly used expression system for recombinant proteins and an efficient whole-cell transformation system. However, the P450 enzyme involved in the hydroxylation reaction has poor solubility in prokaryotes and is difficult to express. It is currently found that CYP107P2 (Pandey et al., Enzyme Microb. Technol. 48 (4-5), 386-392.2011), CYP107Y1 (Pandey et al., Enzyme Microb. Technol. 48 (4-5), 386-392.2011), P450BM3 (Chu et al., Microb. Cell Fact. 15(1), 135.2016), CYP105D7 (Liu et al., J. Mol. Catal. B: Enzym. 132, 91-97.2016) and CYP105A5 ( Subedi et al., Catalysts 12(10), 1157.2022) can hydroxylate specific flavonoid compounds, but there are problems such as low conversion rate. Therefore, it is of great significance to develop P450 enzymes that can be efficiently expressed in prokaryotes to synthesize flavonoids.
发明内容Contents of the invention
本发明提供了细胞色素P450酶突变体P450sca-2,是以SEQ ID NO.1所示的氨基酸序列为出发序列,进行了如下任意一种改进:The invention provides a cytochrome P450 enzyme mutant P450sca-2, which is based on the amino acid sequence shown in SEQ ID NO. 1 as the starting sequence, and has made any of the following improvements:
(1)将SEQ ID NO.1所示的氨基酸序列的第88位的精氨酸突变为丙氨酸;(1) Mutation of arginine at position 88 of the amino acid sequence shown in SEQ ID NO. 1 to alanine;
(2)将SEQ ID NO.1所示的氨基酸序列的第96位的丝氨酸突变为丙氨酸;(2) Mutation of serine at position 96 of the amino acid sequence shown in SEQ ID NO. 1 to alanine;
(3)将SEQ ID NO.1所示的氨基酸序列的第88位的精氨酸突变为丙氨酸,并将第96位的丝氨酸突变为丙氨酸。(3) Mutate the arginine at position 88 of the amino acid sequence shown in SEQ ID NO. 1 to alanine, and mutate the serine at position 96 to alanine.
本发明还提供了编码所述突变体的基因。The invention also provides genes encoding said mutants.
本发明还提供了表达所述细胞色素P450酶突变体P450sca-2或SEQ ID NO.1所示细胞色素P450酶的重组大肠杆菌。The present invention also provides recombinant E. coli expressing the cytochrome P450 enzyme mutant P450sca-2 or the cytochrome P450 enzyme shown in SEQ ID NO.1.
在一种实施方式中,所述重组大肠杆菌还表达铁氧还蛋白还原酶基因CamA(SEQID NO.14)和铁氧还蛋白基因CamB(SEQ ID NO.13)。In one embodiment, the recombinant E. coli also expresses the ferredoxin reductase gene CamA (SEQ ID NO. 14) and the ferredoxin gene CamB (SEQ ID NO. 13).
在一种实施方式中,所述大肠杆菌还表达氧化还原伴侣基因;所述氧化还原伴侣基因包括大肠杆菌的黄素氧还蛋白还原酶Fpr(SEQ ID NO.20)和大肠杆菌来源的黄素氧化蛋白Fld(SEQ ID NO.15)、大肠杆菌来源的FldA(SEQ ID NO.16)、大肠杆菌来源的FldB(SEQID NO.17)、枯草芽孢杆菌来源的黄素氧化蛋白YkuN(SEQ ID NO.18)、枯草芽孢杆菌来源的YkuP(SEQ ID NO.19)中的任一蛋白的组合。In one embodiment, the E. coli also expresses a redox chaperone gene; the redox chaperone gene includes E. coli flavodoxin reductase Fpr (SEQ ID NO. 20) and E. coli-derived flavin Oxidized protein Fld (SEQ ID NO. 15), E. coli-derived FldA (SEQ ID NO. 16), E. coli-derived FldB (SEQ ID NO. 17), Bacillus subtilis-derived flavin oxidation protein YkuN (SEQ ID NO. .18), a combination of any protein from YkuP (SEQ ID NO. 19) derived from Bacillus subtilis.
在一种实施方式中,所述重组大肠杆菌使用表达载体共表达编码所述嗜碳链霉菌(Streptomyces carbophilus)来源的P450sca-2突变体的基因、编码大肠杆菌来源的黄素氧化蛋白基因Fld和编码大肠杆菌来源的黄素氧化蛋白还原酶基因Fpr。In one embodiment, the recombinant E. coli uses an expression vector to co-express the gene encoding the P450sca-2 mutant derived from Streptomyces carbophilus, the E. coli-derived flavin oxidation protein gene Fld and The gene Fpr encoding flavin oxidizing protein reductase derived from Escherichia coli.
在一种实施方式中,所述黄素氧化蛋白具有如SEQ ID NO.2所示的氨基酸序列;所述黄素氧化蛋白还原酶具有如SEQ ID NO.3所示的氨基酸序列。In one embodiment, the flavin oxidized protein has an amino acid sequence as shown in SEQ ID NO.2; the flavoxid protein reductase has an amino acid sequence as shown in SEQ ID NO.3.
在一种实施方式中,所述表达载体为pRSFDuet-1。In one embodiment, the expression vector is pRSFDuet-1.
在一种实施方式中,所述大肠杆菌包括但不限于BL21(DE3),C41(DE3)或C43(DE3)。In one embodiment, the E. coli includes, but is not limited to, BL21(DE3), C41(DE3) or C43(DE3).
本发明还提供全细胞催化合成羟基化黄酮化合物的方法,是以所述重组大肠杆菌作为细胞催化剂,在含底物的反应体系中,于20-37℃反应至少1-12h。The present invention also provides a method for whole-cell catalytic synthesis of hydroxylated flavonoid compounds, which uses the recombinant Escherichia coli as a cell catalyst and reacts at 20-37°C for at least 1-12 hours in a reaction system containing a substrate.
在一种实施方式中,所述底物包括但不限于柚皮素、二氢山奈酚、山奈酚、大豆苷元或芹菜素中的一种或多种。In one embodiment, the substrate includes, but is not limited to, one or more of naringenin, dihydrokaempferol, kaempferol, daidzein or apigenin.
在一种实施方式中,所述细胞催化剂是将所述重组大肠杆菌在35-37℃培养至OD600值为0.6-0.8,加入异丙基-β-D-硫代半乳糖苷后在20-30℃继续培养12-20h制备获得;其中,异丙基-β-D-硫代半乳糖苷的浓度为0.1-1mM。In one embodiment, the cell catalyst is to culture the recombinant Escherichia coli at 35-37°C until the OD 600 value is 0.6-0.8, add isopropyl-β-D-thiogalactopyranoside and then culture it at 20 Prepared by continuing to culture at -30°C for 12-20 hours; the concentration of isopropyl-β-D-thiogalactopyranoside is 0.1-1mM.
在一种实施方式中,将发酵后的发酵液在4℃,8000rpm条件下离心10-20min,收集菌体,并用pH 8.0的磷酸钾缓冲液洗涤菌体。洗涤完成后,用pH 8.0的磷酸钾(含5%-10%v/v的甘油)重悬洗涤后的菌体,获得细胞催化剂。In one embodiment, the fermented fermentation broth is centrifuged at 4°C and 8000 rpm for 10-20 minutes, the bacterial cells are collected, and the bacterial cells are washed with potassium phosphate buffer at pH 8.0. After washing, resuspend the washed cells in potassium phosphate with pH 8.0 (containing 5%-10% v/v glycerol) to obtain the cell catalyst.
在一种实施方式中,反应体系还含有浓度为50-100mM的磷酸钾缓冲液。In one embodiment, the reaction system also contains potassium phosphate buffer with a concentration of 50-100 mM.
在一种实施方式中,所述黄酮化合物包括但不限于柚皮素、二氢山奈酚、山奈酚、大豆苷元、芹菜素中的一种或多种。In one embodiment, the flavonoid compound includes, but is not limited to, one or more of naringenin, dihydrokaempferol, kaempferol, daidzein, and apigenin.
本发明还提供所述基因工程菌在生产圣草酚(以柚皮素为底物)、二氢槲皮素(以二氢山奈酚为底物)、槲皮素(以山奈酚为底物)、木犀草素(以芹菜素为底物)和7,3',4'-三羟基异黄酮(以大豆苷元为底物)多种羟基化黄酮化合物中的应用。The invention also provides that the genetically engineered bacteria are capable of producing eriodictyol (using naringenin as a substrate), dihydroquercetin (using dihydrokaempferol as a substrate), and quercetin (using kaempferol as a substrate). ), luteolin (with apigenin as substrate) and 7,3',4'-trihydroxyisoflavones (with daidzein as substrate) in various hydroxylated flavonoid compounds.
有益效果:Beneficial effects:
(1)本发明通过筛选到高产羟基化黄酮化合物P450sca-2mut,并通过蛋白质工程获得sca-2mutR88A/S96A突变体增强P450sca-2mut的催化活性。(1) The present invention selects the high-yield hydroxylated flavonoid compound P450sca-2 mut and obtains the sca-2 mut R88A/S96A mutant through protein engineering to enhance the catalytic activity of P450sca-2 mut .
(2)通过还原伴侣工程,筛选到大肠杆菌内源黄素氧化蛋白Fld与黄素氧化蛋白还原酶Fpr提高P450sca-2mut全细胞催化活性。(2) Through reducing partner engineering, the endogenous flavin oxidation protein Fld and flavin oxidation protein reductase Fpr of Escherichia coli were screened to improve the whole-cell catalytic activity of P450sca-2 mut .
(3)本发明通过优化的P450sca-2mut全细胞催化体系催化柚皮素合成圣草酚的效率为77%;催化二氢山奈酚合成二氢槲皮素的效率为66%;催化芹菜素合成木犀草素的效率为32%;催化大豆苷元合成7,3',4'-三羟基异黄酮的效率为75%。(3) The efficiency of the present invention in catalyzing the synthesis of eriodictyol from naringenin through the optimized P450sca-2 mut whole-cell catalytic system is 77%; the efficiency of catalyzing the synthesis of dihydrokaempferol into dihydroquercetin is 66%; and the efficiency of catalyzing apigenin The efficiency of synthesizing luteolin is 32%; the efficiency of catalyzing the synthesis of 7,3',4'-trihydroxyisoflavones from daidzein is 75%.
附图说明Description of the drawings
图1为黄酮化合物的骨架结构及主要分类。Figure 1 shows the skeleton structure and main classification of flavonoid compounds.
图2为P450酶及基因组合对羟基化黄酮化合物产量的影响。Figure 2 shows the effect of P450 enzyme and gene combinations on the production of hydroxylated flavonoid compounds.
图3为氧化还原伴侣工程提高P450sca-2mut催化效率。Figure 3 shows redox chaperone engineering to improve the catalytic efficiency of P450sca-2 mut .
图4为酶工程提高P450sca-2mut催化效率。Figure 4 shows enzyme engineering to improve the catalytic efficiency of P450sca-2 mut .
图5为P450sca-2mut及sca-2mutR88A/S96A与底物相互作用分析。Figure 5 shows the interaction analysis between P450sca-2 mut and sca-2 mut R88A/S96A and substrate.
图6为全细胞条件优化提高P450sca-2mutR88A/S96A合成羟基化黄酮能力。Figure 6 shows the optimization of whole cell conditions to improve the ability of P450sca-2 mut R88A/S96A to synthesize hydroxylated flavonoids.
图7为P450sca-2mutR88A/S96A在合成其他羟基化黄酮类化合物的应用。Figure 7 shows the application of P450sca-2 mut R88A/S96A in the synthesis of other hydroxylated flavonoids.
具体实施方式Detailed ways
材料与方法Materials and Methods
LB培养基:10g/L蛋白胨、10g/L氯化钠、5g/L酵母膏,121℃灭菌15min。LB medium: 10g/L peptone, 10g/L sodium chloride, 5g/L yeast extract, sterilized at 121°C for 15 minutes.
TB培养基:12g/L蛋白胨、5g/L甘油、24g/L酵母膏、17mM磷酸二氢钾、72mM磷酸氢二钾,121℃灭菌15min。TB culture medium: 12g/L peptone, 5g/L glycerol, 24g/L yeast extract, 17mM potassium dihydrogen phosphate, 72mM dipotassium hydrogen phosphate, sterilized at 121°C for 15 minutes.
全细胞催化:Whole cell catalysis:
(1)将重组大肠杆菌在35-37℃培养至OD600值为0.6-0.8,加入异丙基-β-D-硫代半乳糖苷后在20-30℃继续培养12-20h。其中,异丙基-β-D-硫代半乳糖苷的浓度为0.1-1mM。(1) Cultivate the recombinant E. coli at 35-37°C until the OD 600 value is 0.6-0.8. Add isopropyl-β-D-thiogalactopyranoside and continue culturing at 20-30°C for 12-20 hours. Among them, the concentration of isopropyl-β-D-thiogalactopyranoside is 0.1-1mM.
(2)将步骤(1)中获得的发酵液在4℃,8000rpm条件下离心10-20min,收集菌体,并用pH 8.0的磷酸钾缓冲液洗涤菌体。洗涤完成后,用pH 8.0的磷酸钾(含5%-10%v/v的甘油)重悬洗涤后的菌体。(2) Centrifuge the fermentation broth obtained in step (1) at 4°C and 8000 rpm for 10-20 minutes, collect the bacterial cells, and wash the bacterial cells with potassium phosphate buffer at pH 8.0. After washing, resuspend the washed cells in potassium phosphate with pH 8.0 (containing 5%-10% v/v glycerol).
(3)利用步骤(2)中获得菌悬液进行黄酮化合物的羟基化反应,全细胞反应体系包括(按终浓度计):菌体细胞50g/L,黄酮类化合物100mg/L;黄酮类化合物包括柚皮素、二氢山奈酚、山奈酚、大豆苷元和芹菜素。全细胞反应于20-37℃反应至少1-12h,反应结束后,取出适量的反应液加入等体积的乙酸乙酯进行萃取,经过萃取、分离后获得3'羟基化黄酮化合物并用高效液相色谱进行分析检测。(3) Use the bacterial suspension obtained in step (2) to carry out the hydroxylation reaction of flavonoid compounds. The whole cell reaction system includes (based on the final concentration): bacterial cells 50g/L, flavonoids 100mg/L; flavonoids Includes naringenin, dihydrokaempferol, kaempferol, daidzein and apigenin. The whole cell reaction is carried out at 20-37°C for at least 1-12 hours. After the reaction is completed, take an appropriate amount of the reaction solution and add an equal volume of ethyl acetate for extraction. After extraction and separation, the 3'hydroxylated flavonoid compound is obtained and analyzed by high performance liquid chromatography. Carry out analysis and testing.
高效液相色谱分析:High performance liquid chromatography analysis:
(1)流动相:A相为含有0.1%三氟乙酸的超纯水,B相为含有0.1%三氟乙酸的甲醇(1) Mobile phase: Phase A is ultrapure water containing 0.1% trifluoroacetic acid, and phase B is methanol containing 0.1% trifluoroacetic acid.
(2)色谱柱:反向色谱柱ZORBAX Eclipse XDB-C18(5μm,4.6×250mm,安捷伦,美国);柱温为40℃;流速:0.8mL/min;洗脱程序:0-1min,10% B;1-10min,10%-40%B;10-20min,40%-60%B;20-23min,60%B;23-25min,60%-10%B;25-27min,10% B。(2) Chromatographic column: reverse chromatography column ZORBAX Eclipse XDB-C18 (5μm, 4.6×250mm, Agilent, USA); column temperature is 40°C; flow rate: 0.8mL/min; elution program: 0-1min, 10% B; 1-10min, 10%-40%B; 10-20min, 40%-60%B; 20-23min, 60%B; 23-25min, 60%-10%B; 25-27min, 10%B .
(3)使用紫外检测器,检测波长290nm。(3) Use a UV detector with a detection wavelength of 290nm.
催化效率的计算:产物的浓度(mg/L)/底物的浓度(mg/L)×100%。Calculation of catalytic efficiency: product concentration (mg/L)/substrate concentration (mg/L) × 100%.
实施例1:筛选高产羟基化黄酮化合物的P450酶Example 1: Screening of P450 enzymes with high yield of hydroxylated flavonoid compounds
选择源自波赛链霉菌(Streptomyces peucetius)的CYP105P2(SEQ ID NO.4)、源自阿维链霉菌(Streptomyces avermitilis)的CYP105D7(SEQ ID NO.5)、源自放线菌(Nonomuraea recticatena)的CYP105AB3(Q87W/T115A/H132L/R191W/G294D,简写为P450moxAmut;SEQ ID NO.6)、源自浅灰链霉菌(Streptomyces griseolus)的CYP105A1(R73A/R84A;简写为CYP105A1mut;SEQ ID NO.7),源自嗜碳链霉菌(Streptomycescarbophil)的CYP105A3(G52S/T85F/F89I/T119S/P159A/V194N/D269E/T323A/N363Y/E370V;简写为P450sca-2mut;SEQ ID NO.1)、通过大肠杆菌密码子优化,合成上述基因(核苷酸序列分别如SEQ ID NO.8-SEQ ID NO.12所示),并将上述基因分别亚克隆到pRSFDuet-1的Nde I和Xho I位点,分别得到重组质粒pRSF-105P2、pRSF-105D7、pRSF-moxAmut、pRSF-105A1mut和pRSF-sca-2mut。由于CYP105家族是典型的三组分P450酶,需要还原伴侣蛋白从电子供体NAD(P)H转递电子到P450酶活性中心,因此,选择恶臭假单胞菌(Pseudomonasputida)的铁氧还蛋白CamB(SEQ ID NO.13)和铁氧化蛋白还原酶CamA(SEQ ID NO.14)作为还原伴侣蛋白。合成密码子优化后的铁氧还蛋白还原酶基因CamA和铁氧还蛋白基因CamB基因,并将CamA和CamB基因亚克隆到重组质粒pRSF-105P2、pRSF-105D7、pRSF-moxAmut、pRSF-105A1mut和pRSF-sca-2mut的Nco I和Sac I酶切位点之间,得到重组质粒pRSF-105P2-CamA-CamB、pRSF-105D7-CamA-CamB、pRSF-moxAmut-CamA-CamB、pRSF-105A1mut-CamA-CamB和pRSF-sca-2mut-CamA-CamB。分别将上述5个重组质粒转化到大肠杆菌表达宿主C41(DE3)中得到5个重组菌株,分别命名为HFLA-1至HFLA-5(图2)。Select CYP105P2 (SEQ ID NO. 4) derived from Streptomyces peucetius, CYP105D7 (SEQ ID NO. 5) derived from Streptomyces avermitilis, and Nonomuraea recticatena. CYP105AB3 (Q87W/T115A/H132L/R191W/G294D, abbreviated as P450moxA mut ; SEQ ID NO. 6), CYP105A1 (R73A/R84A; abbreviated as CYP105A1 mut ; SEQ ID NO. 6) derived from Streptomyces griseolus .7), CYP105A3 (G52S/T85F/F89I/T119S/P159A/V194N/D269E/T323A/N363Y/E370V; abbreviated as P450sca-2 mut ; SEQ ID NO.1) derived from Streptomycescarbophil, The above genes were synthesized through E. coli codon optimization (the nucleotide sequences are shown in SEQ ID NO. 8-SEQ ID NO. 12 respectively), and the above genes were subcloned into the Nde I and Xho I positions of pRSFDuet-1. point, and the recombinant plasmids pRSF-105P2, pRSF-105D7, pRSF-moxA mut , pRSF-105A1 mut and pRSF-sca-2 mut were obtained respectively. Since the CYP105 family is a typical three-component P450 enzyme and requires a reducing chaperone to transfer electrons from the electron donor NAD(P)H to the active center of the P450 enzyme, ferredoxin from Pseudomonas putida was chosen. CamB (SEQ ID NO. 13) and ferredoxin reductase CamA (SEQ ID NO. 14) serve as reduction chaperones. The codon-optimized ferredoxin reductase gene CamA and ferredoxin gene CamB were synthesized, and the CamA and CamB genes were subcloned into the recombinant plasmids pRSF-105P2, pRSF-105D7, pRSF-moxA mut , and pRSF-105A1 Between the Nco I and Sac I restriction sites of mut and pRSF-sca-2 mut , the recombinant plasmids pRSF-105P2-CamA-CamB, pRSF-105D7-CamA-CamB, pRSF-moxA mut -CamA-CamB, and pRSF were obtained -105A1 mut -CamA-CamB and pRSF-sca-2 mut -CamA-CamB. The above five recombinant plasmids were transformed into E. coli expression host C41 (DE3) to obtain five recombinant strains, respectively named HFLA-1 to HFLA-5 (Figure 2).
对HFLA-1至HFLA-5重组菌株使用TB培养进行摇瓶发酵,当重组大肠杆菌在37℃培养至OD600值为0.6-0.8时,加入1mM异丙基-β-D-硫代半乳糖苷后在25℃继续培养20h。发酵完成后,发酵液在4℃,8000rpm条件下离心10min,收集菌体,并用pH 8.0的磷酸钾缓冲液洗涤菌体。洗涤完成后,用pH 8.0的磷酸钾(含10%v/v的甘油)重悬洗涤后的菌体即为全细胞催化剂。全细胞催化的反应体系为(按终浓度计):菌体细胞50g/L,柚皮素100mg/L。结果如图2所示,重组菌株HFLA-5(含有重组质粒pRSF-sca-2mut-CamA-CamB)可以生成20.3mg/L圣草酚,分别是重组菌株HFLA-2(含有重组质粒pRSF-105D7-CamA-CamB)、HFLA-3(含有重组质粒pRSF-moxAmut-CamA-CamB)、HFLA-4(含有重组质粒pRSF-105A1mut-CamA-CamB)产量的3.9、1.3、1.8倍。Use TB culture for shake flask fermentation of the HFLA-1 to HFLA-5 recombinant strains. When the recombinant E. coli is cultured at 37°C until the OD 600 value is 0.6-0.8, add 1mM isopropyl-β-D-thiogalacto After glycoside, culture was continued at 25°C for 20 h. After the fermentation is completed, the fermentation broth is centrifuged at 4°C and 8000 rpm for 10 minutes, the bacterial cells are collected, and the bacterial cells are washed with potassium phosphate buffer at pH 8.0. After washing, resuspend the washed cells in potassium phosphate with pH 8.0 (containing 10% v/v glycerol) to serve as the whole cell catalyst. The reaction system catalyzed by whole cells is (based on final concentration): bacterial cells 50g/L, naringenin 100mg/L. The results are shown in Figure 2. The recombinant strain HFLA-5 (containing the recombinant plasmid pRSF-sca-2 mut -CamA-CamB) can produce 20.3 mg/L eriodictyol, respectively. The recombinant strain HFLA-2 (containing the recombinant plasmid pRSF- 105D7-CamA-CamB), HFLA-3 (containing recombinant plasmid pRSF-moxA mut -CamA-CamB), HFLA-4 (containing recombinant plasmid pRSF-105A1 mut -CamA-CamB), 3.9, 1.3, and 1.8 times the production.
实施例2:还原伴侣工程提高P450 sca-2mut的催化效率Example 2: Reducing chaperone engineering to improve catalytic efficiency of P450 sca-2 mut
对于三组分P450酶来说,电子传递的效率对全细胞催化至关重要。为了筛选出合适的还原伴侣,选择源自大肠杆菌的黄素氧化蛋白Fld(SEQ ID NO.15)、FldA(SEQ IDNO.16)、FldB(SEQ ID NO.17)和源自枯草芽孢杆菌的黄素氧化蛋白YkuN(SEQ ID NO.18)、YkuP(SEQ ID NO.19)分别与源自大肠杆菌的黄素氧还蛋白还原酶Fpr(SEQ ID NO.20)组合获得5组还原伴侣组合;选择源自聚球藻(Synechococcus elongates)铁氧还蛋白Fdx_1499和铁氧还蛋白还原酶FdR_0978作为第6组还原伴侣组合;分别将6组还原伴侣组合组装到实施例1构建的重组质粒pRSF-sca-2mut的Nco I和Sac I酶切位点之间获得重组质粒pRSF-sca-2mut-Fld-Fpr,pRSF-sca-2mut-FldA-Fpr,pRSF-sca-2mut-FldB-Fpr,pRSF-sca-2mut-YkuN-Fpr,pRSF-sca-2mut-YkuP-Fpr和pRSF-sca-2mut-Fdx_1499-FdR_0978。此外,选择巨大芽孢杆菌(Bacillus megaterium)的P450 BM3还原结构域部分(SEQ ID NO.21)作为第7组还原伴侣融合在sca-2mut的C端构建重组质粒pRSF-sca-2mut-BM3。分别将上述7个重组质粒转化至C41(DE3)获得重组菌株HFLA-6至HFLA-12。For three-component P450 enzymes, the efficiency of electron transfer is critical for whole-cell catalysis. In order to screen out suitable reduction partners, flavin oxidation proteins Fld (SEQ ID NO. 15), FldA (SEQ ID NO. 16), FldB (SEQ ID NO. 17) derived from Escherichia coli and flavin oxidation proteins derived from Bacillus subtilis were selected. The flavodoxin proteins YkuN (SEQ ID NO. 18) and YkuP (SEQ ID NO. 19) were respectively combined with the flavodoxin reductase Fpr (SEQ ID NO. 20) derived from Escherichia coli to obtain 5 sets of reducing partner combinations. ; Select ferredoxin Fdx_1499 and ferredoxin reductase FdR_0978 derived from Synechococcus elongates as the sixth group of reducing partner combinations; respectively assemble the six groups of reducing partner combinations into the recombinant plasmid pRSF- constructed in Example 1 Recombinant plasmids pRSF-sca-2 mut -Fld -Fpr, pRSF-sca-2 mut -FldA-Fpr, pRSF-sca-2 mut -FldB- were obtained between the Nco I and Sac I restriction sites of sca-2 mut. Fpr, pRSF-sca-2 mut -YkuN-Fpr, pRSF-sca-2 mut -YkuP-Fpr and pRSF-sca-2 mut -Fdx_1499-FdR_0978. In addition, the P450 BM3 reduction domain part of Bacillus megaterium (SEQ ID NO. 21) was selected as the seventh group of reduction partners and fused to the C terminus of sca-2 mut to construct the recombinant plasmid pRSF-sca-2 mut -BM3 . The above seven recombinant plasmids were transformed into C41 (DE3) to obtain recombinant strains HFLA-6 to HFLA-12.
将重组菌株HFLA-6至HFLA-12进行摇瓶发酵实验,发酵条件如同实施例1,发酵完成后,发酵液在4℃,8000rpm条件下离心10min,收集菌体,并用pH 8.0的磷酸钾缓冲液洗涤菌体。洗涤完成后,用pH 8.0的磷酸钾(含10%v/v的甘油或10%w/v的葡萄糖)重悬洗涤后的菌体即为全细胞催化剂。全细胞催化的反应体系为(按终浓度计):菌体细胞50g/L,柚皮素100mg/L。结果如图3所示,在含有10%v/v甘油的全细胞催化体系中,重组菌株HFLA-7(含重组质粒pRSF-sca-2mut-Fld-Fpr)生成圣草酚的能力最强(38.6mg/L),是对照菌株HFLA-5(含重组质粒pRSF-sca-2mut-CamA-CamB)产量的1.9倍。The recombinant strains HFLA-6 to HFLA-12 were subjected to shake flask fermentation experiments. The fermentation conditions were the same as in Example 1. After the fermentation was completed, the fermentation liquid was centrifuged at 4°C and 8000 rpm for 10 min. The cells were collected and buffered with potassium phosphate at pH 8.0. Wash the bacteria with liquid. After the washing is completed, resuspend the washed cells in potassium phosphate with pH 8.0 (containing 10% v/v glycerol or 10% w/v glucose) to become the whole cell catalyst. The reaction system catalyzed by whole cells is (based on final concentration): bacterial cells 50g/L, naringenin 100mg/L. The results are shown in Figure 3. In the whole-cell catalytic system containing 10% v/v glycerol, the recombinant strain HFLA-7 (containing the recombinant plasmid pRSF-sca-2 mut -Fld-Fpr) has the strongest ability to produce eriodictyol. (38.6mg/L), which is 1.9 times the production of the control strain HFLA-5 (containing the recombinant plasmid pRSF-sca-2 mut -CamA-CamB).
实施例3:酶工程提高sca-2mut的催化效率Example 3: Enzyme engineering to improve catalytic efficiency of sca-2 mut
选择CYP105家族的CYP105A1(UniProtKB:P18326)、CYP105A3(UniProtKB:Q59831)、CYP105AB3(GenBank:AXG58041.1)、CYP105D4(SEQ ID NO.22)、CYP105D5(SEQ IDNO.23)、CYP105D7(UniProtKB:Q82518)和CYP105P2(UniProtKB:Q70AS3)进行多序列比对,选择sca-2mut底物结合口袋周围的6个氨基酸(Arg77、Arg88、Arg93、Gly95、Ser96和Arg197)设计突变体。以实施例2构建的重组菌株HFLA-7(含有质粒pRSF-sca-2mut-Fld-Fpr)为模板,构建含突变的重组质粒pRSF-sca-2mutR77A-Fld-Fpr、pRSF-sca-2mutR88A-Fld-Fpr、pRSF-sca-2mutR93A-Fld-Fpr、pRSF-sca-2mutG95A-Fld-Fpr、pRSF-sca-2mutS96A-Fld-Fpr、pRSF-sca-2mutR197A-Fld-Fpr、pRSF-sca-2mutR88A/S96A-Fld-Fpr。并将上述7个质粒分别转化至C41(DE3)中获得R77A、R88A、R93A、G95A、S96A、R197A和R88A/S96A重组菌株。Choose CYP105A1(UniProtKB:P18326), CYP105A3(UniProtKB:Q59831), CYP105AB3(GenBank:AXG58041.1), CYP105D4(SEQ ID NO.22), CYP105D5(SEQ IDNO.23), CYP105D7(UniProtKB :Q82518) Perform multiple sequence alignment with CYP105P2 (UniProtKB:Q70AS3), and select 6 amino acids (Arg77, Arg88, Arg93, Gly95, Ser96 and Arg197) around the sca-2 mut substrate binding pocket to design mutants. Using the recombinant strain HFLA-7 constructed in Example 2 (containing plasmid pRSF-sca-2 mut -Fld-Fpr) as a template, the mutation-containing recombinant plasmids pRSF-sca-2 mut R77A-Fld-Fpr and pRSF-sca- were constructed. 2 mut R88A-Fld-Fpr, pRSF-sca-2 mut R93A-Fld-Fpr, pRSF-sca-2 mut G95A-Fld-Fpr, pRSF-sca-2 mut S96A-Fld-Fpr, pRSF-sca-2 mut R197A-Fld-Fpr, pRSF-sca-2 mut R88A/S96A-Fld-Fpr. The above seven plasmids were transformed into C41(DE3) to obtain R77A, R88A, R93A, G95A, S96A, R197A and R88A/S96A recombinant strains.
表1菌株及特征Table 1 Bacterial strains and characteristics
将上述重组菌株(R77A、R88A、R93A、G95A、S96A、R197A和R88A/S96A)分别进行摇瓶发酵,发酵条件和全细胞制备条件如实施例1,全细胞催化的反应体系为(按终浓度计):菌体细胞50g/L,柚皮素100mg/L。结果如图4所示,与HFLA-7菌株(含有质粒pRSF-sca-2mut-Fld-Fpr)相比,重组菌株R88A菌株(含有质粒pRSF-sca-2mutR88A-Fld-Fpr)和S96A菌株(含有质粒pRSF-sca-2mutS96A-Fld-Fpr)可以合成60.9mg/L和49.0mg/L的圣草酚;分别提高58%和27%。菌株R88A/S96A(含有质粒pRSF-sca-2mutR88A/S96A-Fld-Fpr)可以合成67.2mg/L的圣草酚,相比HFLA-7菌株提高74%。The above recombinant strains (R77A, R88A, R93A, G95A, S96A, R197A and R88A/S96A) were subjected to shake flask fermentation. The fermentation conditions and whole cell preparation conditions were as in Example 1. The reaction system catalyzed by the whole cell was (according to the final concentration Calculation): bacterial cells 50g/L, naringenin 100mg/L. The results are shown in Figure 4. Compared with the HFLA-7 strain (containing plasmid pRSF-sca-2 mut -Fld-Fpr), the recombinant strains R88A strain (containing plasmid pRSF-sca-2 mut R88A-Fld-Fpr) and S96A The strain (containing plasmid pRSF-sca-2 mut S96A-Fld-Fpr) can synthesize 60.9 mg/L and 49.0 mg/L eriodictyol; an increase of 58% and 27% respectively. Strain R88A/S96A (containing plasmid pRSF-sca-2 mut R88A/S96A-Fld-Fpr) can synthesize 67.2 mg/L of eriodictyol, which is 74% higher than the HFLA-7 strain.
对sca-2mut和sca-2mutR88A/S96A进行同源建模,并和小分子柚皮素进行分子对接,虽然sca-2mut中88位精氨酸和96位丝氨酸不直接和柚皮素作用,但是当88位精氨酸突变为丙氨酸和96位丝氨酸突变为丙氨酸后,底物周围的氢建数量增加(图4),疏水作用增强(图5)。Homology modeling of sca-2 mut and sca-2 mut R88A/S96A was performed, and molecular docking was performed with the small molecule naringenin. Although arginine 88 and serine 96 in sca-2 mut are not directly related to naringenin, However, when arginine at position 88 is mutated to alanine and serine at position 96 is mutated to alanine, the number of hydrogen bonds around the substrate increases (Figure 4) and the hydrophobic interaction is enhanced (Figure 5).
实施例4:全细胞条件优化提高合成羟基化黄酮能力Example 4: Optimization of whole cell conditions to improve the ability to synthesize hydroxylated flavonoids
对实施例3构建的R88A/S96A菌株进行全细胞条件优化,全细胞催化的反应体系为(按终浓度计):菌体细胞50g/L,柚皮素100mg/L。当反应pH设定为8.0时,考察反应温度(20℃、25℃、30℃、37℃、40℃)对全细胞催化的影响;当反应温度设定为37℃时,考察反应pH(6.0、7.0、8.0和9.0)对全细胞催化的影响。其他反应条件同实施例3。结果如图6所示,R88A/S96A菌株的最佳反应条件为pH 8.0,反应温度为37℃。在此反应条件下,使用终浓度100mg/L的柚皮素可以产生71.3mg/L的圣草酚。The whole cell conditions were optimized for the R88A/S96A strain constructed in Example 3. The reaction system catalyzed by the whole cell was (based on the final concentration): 50 g/L bacterial cells and 100 mg/L naringenin. When the reaction pH is set to 8.0, the effect of the reaction temperature (20°C, 25°C, 30°C, 37°C, 40°C) on whole-cell catalysis is examined; when the reaction temperature is set to 37°C, the reaction pH (6.0 , 7.0, 8.0 and 9.0) on whole-cell catalysis. Other reaction conditions are the same as Example 3. The results are shown in Figure 6. The optimal reaction conditions for the R88A/S96A strain were pH 8.0 and the reaction temperature was 37°C. Under these reaction conditions, naringenin with a final concentration of 100 mg/L can produce 71.3 mg/L of eriodictyol.
P450酶是以血红素为辅基的酶,在表达P450酶时增强胞内的血红素供给可以提高P450酶的活性。而商业化的大肠杆菌没有血红素转运蛋白,无法利用直接添加的血红素,考察添加不同终浓度(50,100,200,300和400mg/L)的血红素前体5-氨基乙酰丙酸和不同终浓度(5,10,20,30和40mg/L)的FeSO4对全细胞活性的影响。在培养基终添加100mg/L的5-氨基酸乙酰丙酸和20mg/L FeSO4时,全细胞催化可以产生77.3mg/L的圣草酚。P450 enzymes are enzymes that use heme as a prosthetic group. When expressing P450 enzymes, enhancing the supply of intracellular heme can increase the activity of P450 enzymes. However, commercial E. coli does not have a heme transporter and cannot utilize directly added heme. We investigated the addition of heme precursor 5-aminolevulinic acid at different final concentrations (50, 100, 200, 300 and 400 mg/L) and different final concentrations (5, Effects of 10, 20, 30 and 40 mg/L) FeSO 4 on whole cell viability. When 100 mg/L of 5-amino acid levulinic acid and 20 mg/L FeSO 4 were finally added to the culture medium, 77.3 mg/L of eriodictyol could be produced by whole cell catalysis.
实施例5:P450 sca-2mut在合成其他羟基化黄酮类化合物的应用Example 5: Application of P450 sca-2 mut in the synthesis of other hydroxylated flavonoids
将实施例3构建的R88A/S96A重组菌株使用TB培养基(添加终浓度100mg/L的5-氨基乙酰丙酸和20mg/L的FeSO4)进行摇瓶发酵,发酵条件如同实施例1,并按照实施例1的方法制备全细胞催化剂。分别以终浓度100mg/L的二氢山奈酚、山奈酚、芹菜素、大豆苷元为底物进行全细胞催化。全细胞催化反应体系含有:底物100mg/L,菌体细胞50g/L,反应温度37℃,反应pH 8.0,反应时间12h。结果如图7所示,R88A/S96A重组菌株分别可以产生66.3mg/L二氢槲皮素、5.7mg/L槲皮素、31.8mg/L木犀草素和75.1mg/L 7,3',4'-三羟基异黄酮。The R88A/S96A recombinant strain constructed in Example 3 was subjected to shake flask fermentation using TB medium (with the addition of 5-aminolevulinic acid at a final concentration of 100 mg/L and FeSO 4 of 20 mg/L). The fermentation conditions were the same as in Example 1, and Whole cell catalyst was prepared according to the method of Example 1. Whole-cell catalysis was performed using dihydrokaempferol, kaempferol, apigenin, and daidzein at a final concentration of 100 mg/L as substrates. The whole-cell catalytic reaction system contains: substrate 100mg/L, bacterial cells 50g/L, reaction temperature 37°C, reaction pH 8.0, reaction time 12h. The results are shown in Figure 7. The R88A/S96A recombinant strain can produce 66.3mg/L dihydroquercetin, 5.7mg/L quercetin, 31.8mg/L luteolin and 75.1mg/L 7,3', respectively. 4'-Trihydroxyisoflavone.
虽然本发明已以较佳实施例公开如上,但其并非用以限定本发明,任何熟悉此技术的人,在不脱离本发明的精神和范围内,都可做各种的改动与修饰,因此本发明的保护范围应该以权利要求书所界定的为准。Although the present invention has been disclosed above in terms of preferred embodiments, they are not intended to limit the present invention. Anyone familiar with this technology can make various changes and modifications without departing from the spirit and scope of the present invention. Therefore, The protection scope of the present invention should be defined by the claims.
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CN105886568A (en) * | 2016-04-22 | 2016-08-24 | 浙江大学 | Method for obtaining eriodictyol by biologically transforming naringenin |
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CN105886568A (en) * | 2016-04-22 | 2016-08-24 | 浙江大学 | Method for obtaining eriodictyol by biologically transforming naringenin |
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