CN115311258A - Method and system for automatically segmenting organs in SPECT (single photon emission computed tomography) plane image - Google Patents

Method and system for automatically segmenting organs in SPECT (single photon emission computed tomography) plane image Download PDF

Info

Publication number
CN115311258A
CN115311258A CN202211123639.XA CN202211123639A CN115311258A CN 115311258 A CN115311258 A CN 115311258A CN 202211123639 A CN202211123639 A CN 202211123639A CN 115311258 A CN115311258 A CN 115311258A
Authority
CN
China
Prior art keywords
organ
spect
dimensional
image
template
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Granted
Application number
CN202211123639.XA
Other languages
Chinese (zh)
Other versions
CN115311258B (en
Inventor
陈思
杨雪松
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Jingxinhe Beijing Medical Technology Co ltd
Foshan Map Reading Technology Co ltd
Original Assignee
Jingxinhe Beijing Medical Technology Co ltd
Foshan Map Reading Technology Co ltd
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Jingxinhe Beijing Medical Technology Co ltd, Foshan Map Reading Technology Co ltd filed Critical Jingxinhe Beijing Medical Technology Co ltd
Priority to CN202211123639.XA priority Critical patent/CN115311258B/en
Publication of CN115311258A publication Critical patent/CN115311258A/en
Application granted granted Critical
Publication of CN115311258B publication Critical patent/CN115311258B/en
Active legal-status Critical Current
Anticipated expiration legal-status Critical

Links

Images

Classifications

    • GPHYSICS
    • G06COMPUTING; CALCULATING OR COUNTING
    • G06TIMAGE DATA PROCESSING OR GENERATION, IN GENERAL
    • G06T7/00Image analysis
    • G06T7/0002Inspection of images, e.g. flaw detection
    • G06T7/0012Biomedical image inspection
    • GPHYSICS
    • G06COMPUTING; CALCULATING OR COUNTING
    • G06TIMAGE DATA PROCESSING OR GENERATION, IN GENERAL
    • G06T7/00Image analysis
    • G06T7/10Segmentation; Edge detection
    • G06T7/12Edge-based segmentation
    • GPHYSICS
    • G06COMPUTING; CALCULATING OR COUNTING
    • G06TIMAGE DATA PROCESSING OR GENERATION, IN GENERAL
    • G06T7/00Image analysis
    • G06T7/30Determination of transform parameters for the alignment of images, i.e. image registration
    • GPHYSICS
    • G06COMPUTING; CALCULATING OR COUNTING
    • G06TIMAGE DATA PROCESSING OR GENERATION, IN GENERAL
    • G06T7/00Image analysis
    • G06T7/40Analysis of texture
    • G06T7/41Analysis of texture based on statistical description of texture
    • G06T7/44Analysis of texture based on statistical description of texture using image operators, e.g. filters, edge density metrics or local histograms
    • GPHYSICS
    • G06COMPUTING; CALCULATING OR COUNTING
    • G06TIMAGE DATA PROCESSING OR GENERATION, IN GENERAL
    • G06T2207/00Indexing scheme for image analysis or image enhancement
    • G06T2207/10Image acquisition modality
    • G06T2207/10072Tomographic images
    • G06T2207/10081Computed x-ray tomography [CT]
    • GPHYSICS
    • G06COMPUTING; CALCULATING OR COUNTING
    • G06TIMAGE DATA PROCESSING OR GENERATION, IN GENERAL
    • G06T2207/00Indexing scheme for image analysis or image enhancement
    • G06T2207/10Image acquisition modality
    • G06T2207/10072Tomographic images
    • G06T2207/10108Single photon emission computed tomography [SPECT]

Landscapes

  • Engineering & Computer Science (AREA)
  • Physics & Mathematics (AREA)
  • Computer Vision & Pattern Recognition (AREA)
  • Theoretical Computer Science (AREA)
  • General Physics & Mathematics (AREA)
  • Medical Informatics (AREA)
  • Quality & Reliability (AREA)
  • Radiology & Medical Imaging (AREA)
  • Nuclear Medicine, Radiotherapy & Molecular Imaging (AREA)
  • Health & Medical Sciences (AREA)
  • General Health & Medical Sciences (AREA)
  • Probability & Statistics with Applications (AREA)
  • Nuclear Medicine (AREA)
  • Image Analysis (AREA)
  • Image Processing (AREA)

Abstract

The invention discloses a method and a system for automatically segmenting organs in a SPECT plane image, wherein the method comprises the following steps: detecting an organ with high degree of distinction from the background in a SPECT plane image of a detected person, determining a detection frame corresponding to the organ, and obtaining the central coordinate of the detection frame of the organ; the method comprises the steps of segmenting a target organ from three-dimensional SPECT/CT fusion tomographic data of the same examinee to obtain a three-dimensional organ template picture, and projecting the three-dimensional organ template picture to a two-dimensional plane in the front-back direction of a human body to generate a two-dimensional organ template picture; translating the two-dimensional organ template picture to align the geometric centers of a plurality of organs in the two-dimensional organ template picture with the center of the detection frame obtained in the step A; and registering the two-dimensional organ template image and the SPECT plane image, so that all organs in the two-dimensional organ template image correspond to organ areas in the SPECT plane image, and completing segmentation. The invention realizes full-automatic accurate segmentation of organs in the SPECT plane image, does not need manual participation, and can be suitable for the SPECT plane images of different radiopharmaceuticals.

Description

Method and system for automatically segmenting organs in SPECT (single photon emission computed tomography) plane image
Technical Field
The invention relates to the technical field of medical imaging, in particular to a method and a system for automatically segmenting organs in a SPECT (single photon emission computed tomography) plane image.
Background
Acquiring planar images (anterior, posterior, or both) of a subject using dual-probe SPECT is the primary imaging modality of current clinical mainstream SPECT for diagnosis of various types of diseases and assessment of organ function. In some applications, such as pharmacokinetic studies of new radiopharmaceuticals, glomerular filtration rate measurements, etc., it is necessary to acquire planar images at multiple time points and analyze the time-dependent changes in drug uptake of certain target organs, and therefore it is necessary to segment the corresponding region of the relevant organ (two-dimensional projection) in the SPECT planar image.
At present, the common method in clinical practice is to manually delineate organ outlines to realize segmentation or semi-automatic segmentation combining manual operation and an algorithm, and the main limitations are workload of manual delineation and delineation errors caused by personnel fatigue and subjective difference. The main difficulty of the full-automatic delineation algorithm is that the SPECT plane image is the superposition of the three-dimensional space distribution of the radiopharmaceutical in two dimensions, so that the contrast of certain organs and peripheral tissues in the image is low and the edges are blurred, and great difficulty is brought to a plurality of segmentation algorithms based on rules. And the adoption of data-based methods such as deep learning and the like requires a large amount of accurate sketching data for training, and the corresponding data is difficult to obtain due to the difficulty of manual sketching and the characteristic of strong specialty in the field.
Disclosure of Invention
The invention aims to provide a method and a system for automatically segmenting organs in a SPECT (single photon emission computed tomography) plane image, which are used for segmenting the organs in the SPECT plane image based on the organ segmentation result of three-dimensional SPECT/CT fusion tomography data of the same examinee, so that the organs in the SPECT plane image can be segmented automatically and accurately without manual participation, and the method and the system can be suitable for SPECT plane images of different radiopharmaceuticals.
In order to achieve the purpose, the invention adopts the following technical scheme:
a method of automatically segmenting an organ in a SPECT planar image comprising the steps of:
A. detecting an organ with high degree of difference from the background in a SPECT plane image of a detected person, determining a detection frame corresponding to the organ, and obtaining the central coordinate of the detection frame of the organ;
B. dividing a target organ from three-dimensional SPECT/CT fusion fault data of the same examinee to obtain a three-dimensional organ template map, and projecting the three-dimensional organ template map to a two-dimensional plane in the anteroposterior direction of a human body to generate a two-dimensional organ template map;
C. translating the two-dimensional organ template picture to align the geometric centers of a plurality of organs in the two-dimensional organ template picture with the center of the detection frame obtained in the step A;
D. and registering the two-dimensional organ template image and the SPECT plane image, so that all organs in the two-dimensional organ template image correspond to organ areas in the SPECT plane image to finish segmentation.
Further, in the step a, a deep learning algorithm is used for detecting the SPECT planar image, and a detection frame center coordinate [ xcenter, ycenter ] of an organ which is greatly different from the background is output;
the step of detecting the SPECT plane image by the deep learning algorithm comprises the following steps:
s101: taking ResNet50 as a basic feature extraction network of the detection network, and extracting features to obtain a feature map;
s102: the features extracted in the step S101 are up-sampled, and the size of the features is returned to 1/N of the resolution of the original image;
s103: acquiring a heatmap of the data sampled in the S102 through the sub-network 1, extracting a central position coordinate of the target to be detected through a heatmap extreme point position, predicting the sub-network by utilizing position offset, and acquiring a central point offset;
s104: and correcting the coordinates of the center point of the target through the center point offset acquired in the step S103, so as to acquire the position of the center point of the target to be detected finally.
Further, in the step B, in the three-dimensional SPECT/CT fusion tomographic data of the same subject, pixels belonging to the same organ are set to the same encoding value, different organs correspond to different encoding values, and pixels not belonging to any organ are encoded to be 0;
and projecting the three-dimensional template picture to a two-dimensional plane in the front-back direction of the human body, and enabling pixel values on the two-dimensional plane to correspond to the coding values or 0 of each organ, so that the two-dimensional organ template picture can be generated.
Further, in the step B, a unet + + segmentation network is used to segment the main organs in the three-dimensional SPECT/CT fusion tomographic data, including the following steps:
s201: taking each layer of the CT tomogram as data, and obtaining a segmentation result of the layer through a unet + + segmentation network;
s202: putting all the segmentation results of each layer of data of the CT tomographic image together, and integrating the three-dimensional tomographic segmentation results of each organ through connected domain analysis;
s203: and optimizing the S202 three-dimensional fault segmentation result by using the contrast information of the SPECT fault image to obtain a three-dimensional organ template map.
Further, in the step B, the step of obtaining the three-dimensional organ template map is as follows:
s301: extracting features of the SPECT tomographic image and the CT tomographic image respectively to obtain feature maps;
s302: enabling the feature maps of the two modes to enter an SPP network, pooling the feature maps by the SPP network to generate fixed-length output, namely featuremap, and linking the featuremaps of the two modes to enable the featuremaps with the same size of the two modes to be spliced according to channel dimensions to obtain a spliced multi-modal result;
s303: and decoding the spliced multi-modal result into a segmentation result through sampling on N layers to obtain the three-dimensional organ template picture.
Further, the step C includes the following sub-steps:
defining the coordinates of the center of the detection frame of the organ in the SPECT plane image as
Figure BDA0003848162580000031
Wherein i represents the number of the organ;
defining the geometric center coordinate of the organ in the two-dimensional organ template picture as (x) i ,y i ),i=1,2,..,I;
Finding the optimal translation vector (x) of the two-dimensional organ template map by the following formula 0 ,y 0 ) And minimizing the sum of squared distances between the geometric center of the organ in the two-dimensional organ template map and the center of the detection frame of the organ in the SPECT plane image:
Figure BDA0003848162580000041
solving the above formula yields:
Figure BDA0003848162580000042
further, in the step D, the two-dimensional organ template image and the SPECT planar image are integrally registered based on an image registration method of mutual information cost function or B-spline non-rigid transformation.
Further, the image registration method of the B-spline non-rigid transformation is as follows:
defining SPECT plane image vector as P, organ template image vector as T, organ template image vector after B spline conversion as B (T, s) 1 ,s 2 ,...,s n), wherein s1 ,s 2 ,...,s n Representing a set of parameters of the B-spline transformation, the minimization problem can be expressed as the following equation:
(s 1 ,s 2 ,...,s n ) opt =argmin{-I(P,B(T,s 1 ,s 2 ,...,s n ))} (3)
i.e. find an optimized set of B-spline transformation parameters such that P and B (T, s) 1 ,s 2 ,...,s n ) Mutual information of I (P, B (T, s) 1 ,s 2 ,...,s n ) Maximum, define p i And b i Respectively represent P and B (T, s) 1 ,s 2 ,...,s n ) The value of the ith pixel of (2) is defined as follows:
Figure BDA0003848162580000043
wherein Prob (p) i ,b i ) Representing a joint probability function, prob (p) i ) The probability function of the distribution of pixel values, prob (b), representing the image P i ) Representative image B (T, s) 1 ,s 2 ,...,s n ) The probability function is distributed over the pixel values.
Further, the image registration method based on the mutual information cost function is as follows:
defining the SPECT plane image vector as P and the corresponding template image vector with organ number as i as T i ,T i The pixel value of the region corresponding to the organ number i in the image is i, the pixel values of other regions are 0, and the rigid-transformed organ i template image vector is
Figure BDA0003848162580000051
wherein
Figure BDA0003848162580000052
Relative to the geometric center (x) of the organ i ,y i ) A two-bit vector of the translation is,
Figure BDA0003848162580000053
for the angle at which the organ is rotationally transformed around the translated geometric center, the above registration problem is equivalent to the following optimization problem:
Figure BDA0003848162580000054
Figure BDA0003848162580000055
representing two vector correspondencesVector, variance, obtained by pixel multiplication >0 () Representing the variance of the pixel values for all pixels greater than zero vector in parentheses.
A system for automatically segmenting an organ in a SPECT planar image, the system employing the method for automatically segmenting an organ in a SPECT planar image described above, the system comprising:
the detection frame acquisition module is used for detecting an organ with high degree of distinction from the background in a SPECT plane image of a detected person, determining a detection frame corresponding to the organ and obtaining the center coordinates of the detection frame of the organ;
the segmentation module is used for segmenting a target organ from three-dimensional SPECT/CT fusion tomographic data of the same examinee to obtain a three-dimensional organ template map, and projecting the three-dimensional organ template map to a two-dimensional plane in the anteroposterior direction of a human body to generate a two-dimensional organ template map;
an alignment module, which is used for translating the two-dimensional organ template drawing to align the geometric centers of a plurality of organs in the two-dimensional organ template drawing with the center of the detection frame obtained in the step A;
a registration module to register the two-dimensional organ template map with the SPECT planar image such that all organs in the two-dimensional organ template map correspond to organ regions in the SPECT planar image.
The technical scheme provided by the invention can have the following beneficial effects:
1. the method of the invention is based on the organ segmentation result of the three-dimensional SPECT/CT fusion fault data of the same examinee, segments the SPECT plane image, realizes full-automatic accurate segmentation of the organ in the SPECT plane image, does not need manual participation, and improves the accuracy of organ segmentation;
2. aiming at the condition that the organ overlap and shelter are serious in the SPECT plane image, the method does not need a deep learning method for training by adopting a large amount of accurate delineation data, is low in difficulty, and can also be suitable for the SPECT plane images of different radiopharmaceuticals.
Drawings
FIG. 1 is a flow chart of a method of automatically segmenting an organ in a SPECT planar image in accordance with one embodiment of the present invention;
FIG. 2 is a flow chart for deriving coordinates of a center of a detection box corresponding to an organ in a SPECT plane image according to an embodiment of the present invention;
FIG. 3 is a schematic diagram of an organ correspondence detection box in a SPECT planar image according to an embodiment of the present invention;
FIG. 4 is a flow chart of the segmentation of a target organ from three-dimensional SPECT/CT fusion tomographic data in accordance with an embodiment of the present invention;
FIG. 5 is an image of the same portion of a CT tomogram and a three-dimensional template according to an embodiment of the present invention, FIG. 5A is a CT tomogram, and FIG. 5B is a three-dimensional template;
fig. 6 is a schematic diagram of registering a two-dimensional organ template map with a SPECT plane image, fig. 6A is a two-dimensional organ template map, fig. 6B is a SPECT plane image (geometric mean map), and fig. 6C is a schematic diagram of a two-dimensional organ template map after registration with a SPECT plane image, in one embodiment of the invention.
Detailed Description
Reference will now be made in detail to embodiments of the present invention, examples of which are illustrated in the accompanying drawings, wherein like reference numerals refer to the same or similar elements or elements having the same or similar functions throughout. The embodiments described below with reference to the accompanying drawings are illustrative only for the purpose of explaining the present invention, and are not to be construed as limiting the present invention.
A method and system for automatically segmenting an organ in a SPECT planar image according to embodiments of the present invention are described below with reference to fig. 1 to 6.
As shown in fig. 1, an embodiment of the present invention provides a method for automatically segmenting an organ in a SPECT planar image, including the following steps:
A. detecting an organ with high degree of distinction from the background in a SPECT plane image of a detected person, determining a detection frame corresponding to the organ, and obtaining the central coordinate of the detection frame of the organ;
B. the method comprises the steps of segmenting a target organ from three-dimensional SPECT/CT fusion tomographic data of the same examinee to obtain a three-dimensional organ template picture, and projecting the three-dimensional organ template picture to a two-dimensional plane in the front-back direction of a human body to generate a two-dimensional organ template picture;
C. translating the two-dimensional organ template picture to align the geometric centers of a plurality of organs in the two-dimensional organ template picture with the center of the detection frame obtained in the step A;
D. and registering the two-dimensional organ template image and the SPECT plane image, so that all organs in the two-dimensional organ template image correspond to organ areas in the SPECT plane image, and completing segmentation.
According to the method, an organ with high degree of distinction from the background in the SPECT plane image is detected, then a detection frame of the organ is obtained, the central coordinate of the detection frame is calculated, then a three-dimensional template image is obtained from three-dimensional SPECT/CT fusion fault data of the same examinee, then a two-dimensional organ template image is generated, the organ in the two-dimensional organ template image is aligned with the center of the detection frame in the step A, then image registration is carried out, and organ segmentation in the SPECT plane image can be completed. Therefore, the method provided by the invention is used for segmenting the SPECT plane image based on the organ segmentation result of the three-dimensional SPECT/CT fusion fault data of the same examinee, so that the organ in the SPECT plane image is segmented automatically and accurately without manual participation, and the organ segmentation accuracy is improved; in addition, aiming at the condition that the organ overlap and shelter are serious in the SPECT plane image, the method does not need to adopt a large amount of deep learning method for training by accurately delineating data, is low in difficulty, and can be suitable for the SPECT plane images of different radiopharmaceuticals.
In step a, a SPECT plane image is detected by a deep learning algorithm, and a central coordinate [ xcenter, ycenter ] of a detection frame of an organ greatly different from a background is output;
as shown in fig. 2, the step of detecting the SPECT planar image with the deep learning algorithm includes:
s101: taking ResNet50 as a basic Feature extraction network of the detection network, and performing Feature extraction to obtain a Feature Map (Feature Map);
s102: the features extracted in step S101 are up-sampled (Conv 2D _ transit deconvolution) and the size thereof is returned to 1/N of the original image resolution, preferably, 1/N is set to 1/4 or 1/2.
S103: for the data sampled in S102, a heatmap is obtained through the subnetwork 1 (Conv combination network), the coordinates of the Center position of the target to be detected are extracted through the extreme point position of the heatmap, and the Center offset (Center offset) is obtained by using the position offset prediction subnetwork;
s104: the center point coordinates of the target are corrected by the center point offset obtained in S103, and the center point position (peak as object center) of the target to be detected can be finally obtained.
The detection frame generation result chart in the step a is shown in fig. 3, and the detection frame generation algorithm is simple. The SPECT planar image in step a is a geometric mean image of the anterior image, a geometric mean image of the posterior image, or a weighted arithmetic mean and geometric mean image of the anterior and posterior bits.
In step B, in the three-dimensional SPECT/CT fusion tomographic data of the same subject, pixels belonging to the same organ are set to the same encoding value, different organs correspond to different encoding values, and pixels not belonging to any organ are encoded to be 0; and projecting the three-dimensional template picture to a two-dimensional plane in the front-back direction of the human body, and enabling pixel values on the two-dimensional plane to correspond to the coding values or 0 of each organ, so that the two-dimensional organ template picture can be generated.
Specifically, in the step B, a unet + + segmentation network is used to segment the main organs in the three-dimensional SPECT/CT fusion tomographic data, as shown in fig. 4, including the following steps:
s201: firstly, preprocessing a CT tomogram, namely windowing transformation and normalization of pixel values, and then taking each layer of the CT tomogram as data to obtain a layer segmentation result through a unet + + segmentation network;
s202: putting all the segmentation results of each layer of data of the CT tomographic image together, and integrating the three-dimensional tomographic segmentation results of each organ through connected domain analysis;
s203: optimizing the S202 three-dimensional fault segmentation result by using the contrast information of the SPECT fault image to obtain a three-dimensional organ template map, wherein the optimization method specifically comprises the following steps: and in the segmentation region corresponding to the SPECT image organ, calculating a SPECT image pixel value statistical histogram, performing secondary confirmation on the pixel values at the edge of the organ segmentation region based on the SPECT image pixel value statistical histogram, and giving an organ code value to the final segmentation result to obtain a three-dimensional organ template image.
In another embodiment, in step B, the step of obtaining the three-dimensional organ template map is as follows:
s301: extracting features of the SPECT tomographic image and the CT tomographic image respectively to obtain feature maps;
s302: enabling the feature maps of the two modes to enter an SPP network, pooling the feature maps by the SPP network to generate fixed-length output, namely, featuremaps, and linking the featuremaps of the two modes to enable the featuremaps with the same size of the two modes to be spliced according to channel dimensions to obtain a spliced multi-mode result;
s303: and decoding the spliced multi-modal result into a segmentation result through sampling on the N layers to obtain the three-dimensional organ template picture.
It should be noted that, in the algorithm for projecting the three-dimensional template onto the two-dimensional plane in step B, for a plurality of organs that overlap and are shielded in the three-dimensional space, the organ number with a higher pixel value in the SPECT tomographic image is selected as the number of the pixel corresponding to the final two-dimensional projection template.
More specifically, the step C of aligning the geometric center of the organ of the two-dimensional organ template map and the center of the SPECT plane atlas organ detection box is implemented by an algorithm for seeking the square sum of the distances of the corresponding organ centers to be minimized, and specifically, the step C comprises the following sub-steps:
defining the coordinates of the center of the detection frame of the organ in the SPECT plane image as
Figure BDA0003848162580000101
Wherein i represents the number of the organ;
defining the geometric center coordinate of the organ in the two-dimensional organ template picture as (x) i ,y i ),i=1,2,..,I;
Finding the optimal translation vector (x) of the two-dimensional organ template map by the following formula 0 ,y 0 ) And minimizing the sum of squared distances between the geometric center of the organ in the two-dimensional organ template map and the center of the detection frame of the organ in the SPECT plane image:
Figure BDA0003848162580000102
solving the above formula yields:
Figure BDA0003848162580000103
in step D, the two-dimensional organ template map and the SPECT planar image are integrally registered by using an image registration method based on mutual information cost function or B-spline non-rigid transformation.
Specifically, the image registration method of B-spline non-rigid transformation is as follows:
defining SPECT plane image vector as P, organ template image vector as T, organ template image vector after B spline conversion as B (T, s) 1 ,s 2 ,...,s n), wherein s1 ,s 2 ,...,s n Representing a set of parameters of the B-spline transformation, the minimization problem can be expressed as the following equation:
(s 1 ,s 2 ,...,s n ) opt =argmin{-I(P,B(T,s 1 ,s 2 ,...,s n ))} (3)
i.e. find an optimized set of B-spline transformation parameters such that P and B (T, s) 1 ,s 2 ,...,s n ) Mutual information of I (P, B (T, s) 1 ,s 2 ,...,s n ) Maximum, define p i And b i Respectively represent P and B (T, s) 1 ,s 2 ,...,s n ) The value of the ith pixel of (2) is defined as follows:
Figure BDA0003848162580000111
wherein Prob (p) i ,b i ) Representing a joint probability function, prob (p) i ) The probability function of the distribution of pixel values, prob (b), representing the image P i ) Representative image B (T, s) 1 ,s 2 ,...,s n ) The probability function is distributed over the pixel values.
The solution of the formula (3) is a typical nonlinear function minimization problem, and can be solved by a steepest gradient descent method.
Further, the image registration method based on the mutual information cost function is as follows:
defining the SPECT plane image vector as P and the corresponding template image vector with organ number as i as T i ,T i The pixel value of the region corresponding to the organ number i in the image is i, the pixel values of other regions are 0, and the rigid-transformed organ i template image vector is
Figure BDA0003848162580000112
wherein
Figure BDA0003848162580000113
Relative to the geometric center (x) of the organ i ,y i ) A two-bit vector of the translation is,
Figure BDA0003848162580000114
for the angle at which the organ is rotationally transformed around the translated geometric center, the above registration problem is equivalent to the following optimization problem:
Figure BDA0003848162580000115
Figure BDA0003848162580000116
representing the vector obtained by multiplying corresponding pixels of two vectors, variance >0 () Representing the variance of the pixel values of all pixels greater than zero vector in parentheses.
Wherein, by applying the steepest gradient descent method to solve equation (5), the optimized transformation parameters for three separate rigid registrations for each organ i can be obtained, thereby performing independent registration for each organ.
The embodiment of the invention also provides a system for automatically segmenting organs in the SPECT plane image, which adopts the method for automatically segmenting the organs in the SPECT plane image and comprises a detection frame acquisition module, a segmentation module, an alignment module and a registration module, wherein the modules cooperate with each other to complete the automatic segmentation of the organs in the SPECT plane image.
Specifically, the detection frame acquisition module is used for detecting an organ with a high degree of distinction from a background in a SPECT plane image of a subject, determining a detection frame corresponding to the organ, and obtaining a detection frame center coordinate of the organ;
the segmentation module is used for segmenting a target organ from three-dimensional SPECT/CT fusion fault data of the same examinee to obtain a three-dimensional organ template picture, and projecting the three-dimensional organ template picture to a two-dimensional plane in the anteroposterior direction of a human body to generate a two-dimensional organ template picture;
the alignment module is used for translating the two-dimensional organ template drawing to align the geometric centers of a plurality of organs in the two-dimensional organ template drawing with the center of the detection frame obtained in the step A;
the registration module is used for registering the two-dimensional organ template image with the SPECT plane image, so that all organs in the two-dimensional organ template image correspond to organ areas in the SPECT plane image.
Other components and operations of a method and system for automatically segmenting an organ in a SPECT planar image according to embodiments of the present invention are known to those of ordinary skill in the art and will not be described in detail herein.
In the description herein, references to the description of the terms "embodiment," "example," etc., mean that a particular feature, structure, material, or characteristic described in connection with the embodiment or example is included in at least one embodiment or example of the invention. In this specification, the schematic representations of the terms used above do not necessarily refer to the same embodiment or example. Furthermore, the particular features, structures, materials, or characteristics described may be combined in any suitable manner in any one or more embodiments or examples.
While embodiments of the present invention have been shown and described, it will be understood by those of ordinary skill in the art that: various changes, modifications, substitutions and alterations can be made to the embodiments without departing from the principles and spirit of the invention, the scope of which is defined by the claims and their equivalents.

Claims (10)

1. A method for automatically segmenting an organ in a SPECT planar image, comprising the steps of:
A. detecting an organ with high degree of distinction from the background in a SPECT plane image of a detected person, determining a detection frame corresponding to the organ, and obtaining the central coordinate of the detection frame of the organ;
B. dividing a target organ from three-dimensional SPECT/CT fusion fault data of the same examinee to obtain a three-dimensional organ template map, and projecting the three-dimensional organ template map to a two-dimensional plane in the anteroposterior direction of a human body to generate a two-dimensional organ template map;
C. translating the two-dimensional organ template picture to align the geometric centers of a plurality of organs in the two-dimensional organ template picture with the center of the detection frame obtained in the step A;
D. and registering the two-dimensional organ template image and the SPECT plane image, so that all organs in the two-dimensional organ template image correspond to organ areas in the SPECT plane image, and completing segmentation.
2. The method for automatically segmenting an organ in a SPECT planar image according to claim 1, wherein in step a, the SPECT planar image is detected by a deep learning algorithm, and the center coordinates [ xcenter, ycenter ] of the organ greatly different from the background is output;
the step of detecting the SPECT plane image by the deep learning algorithm comprises the following steps:
s101: taking ResNet50 as a basic feature extraction network of the detection network, and extracting features to obtain a feature map;
s102: the features extracted in the step S101 are up-sampled, and the size of the features is returned to 1/N of the resolution of the original image;
s103: acquiring a heatmap of the data sampled in the S102 through the sub-network 1, extracting a central position coordinate of the target to be detected through a heatmap extreme point position, predicting the sub-network by utilizing position offset, and acquiring a central point offset;
s104: and correcting the coordinates of the center point of the target through the center point offset acquired in the step S103, so as to acquire the position of the center point of the target to be detected finally.
3. The method for automatically segmenting organs in the SPECT plane image according to claim 1, wherein in the step B, pixels belonging to the same organ are set to the same encoding value in the three-dimensional SPECT/CT fusion tomographic data of the same subject, different organs correspond to different encoding values, and pixels not belonging to any organ are encoded to be 0;
and projecting the three-dimensional template picture to a two-dimensional plane in the front-back direction of the human body, and enabling pixel values on the two-dimensional plane to correspond to the coding values or 0 of each organ, so that the two-dimensional organ template picture can be generated.
4. The method for automatically segmenting organs in the SPECT plane image according to claim 3, wherein in the step B, the main organs in the three-dimensional SPECT/CT fusion fault data are segmented by using a unet + + segmentation network, and the method comprises the following steps:
s201: taking each layer of the CT tomogram as data, and obtaining a segmentation result of the layer through a unet + + segmentation network;
s202: putting all the segmentation results of each layer of data of the CT tomographic image together, and integrating the three-dimensional tomographic segmentation results of each organ through connected domain analysis;
s203: and optimizing the S202 three-dimensional fault segmentation result by using the contrast information of the SPECT fault image to obtain a three-dimensional organ template map.
5. The method for automatically segmenting an organ in a SPECT plane image according to claim 3, wherein in the step B, the step of obtaining a three-dimensional organ template map is as follows:
s301: extracting features of the SPECT tomographic image and the CT tomographic image respectively to obtain feature maps;
s302: enabling the feature maps of the two modes to enter an SPP network, pooling the feature maps by the SPP network to generate fixed-length output, namely, featuremaps, and linking the featuremaps of the two modes to enable the featuremaps with the same size of the two modes to be spliced according to channel dimensions to obtain a spliced multi-mode result;
s303: and decoding the spliced multi-modal result into a segmentation result through sampling on the N layers to obtain the three-dimensional organ template picture.
6. The method of automatically segmenting an organ in a SPECT plane image of claim 1 wherein step C includes the sub-steps of:
defining the coordinates of the center of the detection frame of the organ in the SPECT plane image as
Figure FDA0003848162570000031
Wherein i represents the number of the organ;
defining the geometric center coordinate of the organ in the two-dimensional organ template picture as (x) i ,y i ),i=1,2,..,I;
Finding the optimal translation vector (x) of the two-dimensional organ template map by the following formula 0 ,y 0 ) Minimizing the sum of squares of the distances corresponding to the geometric center of the organ of the two-dimensional organ template map and the center of the detection box of the organ in the SPECT plane image:
Figure FDA0003848162570000032
solving the above formula yields:
Figure FDA0003848162570000033
7. the method for automatically segmenting an organ in the SPECT plane image according to claim 1, wherein in the step D, the two-dimensional organ template map is integrally registered with the SPECT plane image based on an image registration method of mutual information cost function or B-spline non-rigid transformation.
8. The method for automatically segmenting an organ in a SPECT plane image of claim 7 wherein the image registration method of the B-spline non-rigid transformation is as follows:
defining SPECT plane image vector as P, organ template image vector as T, organ template image vector after B spline conversion as B (T, s) 1 ,s 2 ,...,s n), wherein s1 ,s 2 ,...,s n Representing a set of parameters of the B-spline transformation, the minimization problem can be expressed as the following equation:
(s 1 ,s 2 ,...,s n ) opt =argmin{-I(P,B(T,s 1 ,s 2 ,...,s n ))} (3)
i.e. finding an optimized set of B-spline transformation parameters such that P and B (T, s) 1 ,s 2 ,...,s n ) Mutual information of I (P, B (T, s) 1 ,s 2 ,...,s n ) Maximum, define p i And b i Respectively represent P and B (T, s) 1 ,s 2 ,...,s n ) The value of the ith pixel of (2) is defined as follows:
Figure FDA0003848162570000041
wherein Prob (p) i ,b i ) Representing a joint probability function, prob (p) i ) The probability function of the distribution of pixel values, prob (b), representing the image P i ) Representative image B (T, s) 1 ,s 2 ,...,s n ) The probability function is distributed over the pixel values.
9. The method for automatically segmenting organs in the SPECT plane image of claim 7 wherein the image registration method based on the mutual information cost function is as follows:
defining the SPECT plane image vector as P and the corresponding template image vector with organ number as i as T i ,T i The pixel value of the region corresponding to the organ number i in the image is i, the pixel values of other regions are 0, and the rigid-transformed organ i template image vector is
Figure FDA0003848162570000042
wherein
Figure FDA0003848162570000043
Relative to the geometric center (x) of the organ i ,y i ) A two-bit vector of the translation is,
Figure FDA0003848162570000044
for the angle at which the organ is rotationally transformed around the translated geometric center, the above registration problem is equivalent to the following optimization problem:
Figure FDA0003848162570000045
Figure FDA0003848162570000046
representing the vector obtained by multiplying corresponding pixels of two vectors, variance >0 () Representing the variance of the pixel values of all pixels greater than zero vector in parentheses.
10. A system for automatically segmenting an organ in a SPECT planar image, the system employing the method for automatically segmenting an organ in a SPECT planar image of any one of claims 1-9, the system comprising:
the detection frame acquisition module is used for detecting an organ with high degree of distinction from the background in a SPECT plane image of a detected person, determining a detection frame corresponding to the organ and obtaining the center coordinates of the detection frame of the organ;
the segmentation module is used for segmenting a target organ from three-dimensional SPECT/CT fusion tomographic data of the same examinee to obtain a three-dimensional organ template map, and projecting the three-dimensional organ template map to a two-dimensional plane in the anteroposterior direction of a human body to generate a two-dimensional organ template map;
an alignment module, which is used for translating the two-dimensional organ template drawing to align the geometric centers of a plurality of organs in the two-dimensional organ template drawing with the center of the detection frame obtained in the step A;
a registration module to register the two-dimensional organ template map with the SPECT planar image such that all organs in the two-dimensional organ template map correspond to organ regions in the SPECT planar image.
CN202211123639.XA 2022-09-15 2022-09-15 Method and system for automatically segmenting organs in SPECT planar image Active CN115311258B (en)

Priority Applications (1)

Application Number Priority Date Filing Date Title
CN202211123639.XA CN115311258B (en) 2022-09-15 2022-09-15 Method and system for automatically segmenting organs in SPECT planar image

Applications Claiming Priority (1)

Application Number Priority Date Filing Date Title
CN202211123639.XA CN115311258B (en) 2022-09-15 2022-09-15 Method and system for automatically segmenting organs in SPECT planar image

Publications (2)

Publication Number Publication Date
CN115311258A true CN115311258A (en) 2022-11-08
CN115311258B CN115311258B (en) 2023-05-02

Family

ID=83865861

Family Applications (1)

Application Number Title Priority Date Filing Date
CN202211123639.XA Active CN115311258B (en) 2022-09-15 2022-09-15 Method and system for automatically segmenting organs in SPECT planar image

Country Status (1)

Country Link
CN (1) CN115311258B (en)

Cited By (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN116188617A (en) * 2023-04-21 2023-05-30 有方(合肥)医疗科技有限公司 CT image data processing method, device and CT system

Citations (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2009097612A1 (en) * 2008-01-31 2009-08-06 The Johns Hopkins University Automated image analysis for magnetic resonance imaging
CN114359642A (en) * 2022-01-12 2022-04-15 大连理工大学 Multi-modal medical image multi-organ positioning method based on one-to-one target query Transformer
CN115035089A (en) * 2022-06-28 2022-09-09 华中科技大学苏州脑空间信息研究院 Brain anatomy structure positioning method suitable for two-dimensional brain image data

Patent Citations (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2009097612A1 (en) * 2008-01-31 2009-08-06 The Johns Hopkins University Automated image analysis for magnetic resonance imaging
CN114359642A (en) * 2022-01-12 2022-04-15 大连理工大学 Multi-modal medical image multi-organ positioning method based on one-to-one target query Transformer
CN115035089A (en) * 2022-06-28 2022-09-09 华中科技大学苏州脑空间信息研究院 Brain anatomy structure positioning method suitable for two-dimensional brain image data

Non-Patent Citations (1)

* Cited by examiner, † Cited by third party
Title
高瑞婷 等 *

Cited By (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN116188617A (en) * 2023-04-21 2023-05-30 有方(合肥)医疗科技有限公司 CT image data processing method, device and CT system
CN116188617B (en) * 2023-04-21 2023-08-08 有方(合肥)医疗科技有限公司 CT image data processing method, device and CT system

Also Published As

Publication number Publication date
CN115311258B (en) 2023-05-02

Similar Documents

Publication Publication Date Title
US7117026B2 (en) Physiological model based non-rigid image registration
US10332267B2 (en) Registration of fluoroscopic images of the chest and corresponding 3D image data based on the ribs and spine
Hill et al. A strategy for automated multimodality image registration incorporating anatomical knowledge and imager characteristics
US9361686B2 (en) Method and apparatus for the assessment of medical images
US20030216631A1 (en) Registration of thoracic and abdominal imaging modalities
CN108520542B (en) Reconstruction method for time phase matching of PET/CT data
Klinder et al. Automated model-based rib cage segmentation and labeling in CT images
EP1652122B1 (en) Automatic registration of intra-modality medical volume images using affine transformation
CN114066953A (en) Three-dimensional multi-modal image deformable registration method for rigid target
CN115311258B (en) Method and system for automatically segmenting organs in SPECT planar image
CN116650115A (en) Orthopedic surgery navigation registration method based on UWB mark points
CN107292351A (en) The matching process and device of a kind of tubercle
CN109872353B (en) White light data and CT data registration method based on improved iterative closest point algorithm
Li et al. 3D intersubject warping and registration of pulmonary CT images for a human lung model
Huesman et al. Deformable registration of multimodal data including rigid structures
CN111166373B (en) Positioning registration method, device and system
Zhang et al. Performance analysis of active shape reconstruction of fractured, incomplete skulls
Sargent et al. Cross modality registration of video and magnetic tracker data for 3D appearance and structure modeling
Shimizu et al. Simultaneous extraction of multiple organs from abdominal CT
Byrnes et al. Multi-Frame CT-Video Registration for 3D Airway-Wall Analysis
De Moor et al. Non-rigid registration with position dependent rigidity for whole body PET follow-up studies
Wang et al. Elastic medical image registration based on image intensity
CN114159085B (en) PET image attenuation correction method and device, electronic equipment and storage medium
Tang et al. Validation of mutual information-based registration of CT and bone SPECT images in dual-isotope studies
Balasubramanian et al. Registration of PET and MR images of human brain using normalized cross correlation algorithm and spatial transformation techniques

Legal Events

Date Code Title Description
PB01 Publication
PB01 Publication
SE01 Entry into force of request for substantive examination
SE01 Entry into force of request for substantive examination
GR01 Patent grant
GR01 Patent grant