CN115197301A - Calcium indication tool for intracellular calcium signal detection and related drug screening and application thereof - Google Patents
Calcium indication tool for intracellular calcium signal detection and related drug screening and application thereof Download PDFInfo
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- CN115197301A CN115197301A CN202210657761.9A CN202210657761A CN115197301A CN 115197301 A CN115197301 A CN 115197301A CN 202210657761 A CN202210657761 A CN 202210657761A CN 115197301 A CN115197301 A CN 115197301A
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- glu
- calcium
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- 229910052791 calcium Inorganic materials 0.000 title claims abstract description 131
- 238000001514 detection method Methods 0.000 title description 11
- 230000003834 intracellular effect Effects 0.000 title description 7
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Abstract
The invention belongs to the field of biotechnology, and provides a calcium indicator protein for detecting calcium signals, wherein the amino acid sequence of the calcium indicator protein is shown as any one of SEQ ID NO 3-6. The calcium indicator protein has high fluorescence brightness and large dynamic range, and can directly indicate the calcium concentration.
Description
Technical Field
The invention belongs to the technical field of biology, and relates to a calcium indication tool for detecting a calcium signal.
Background
Calcium ion is a second messenger commonly used by cells. Calcium signaling, the spatiotemporal variation of free calcium concentration within a cell, is essential for the maintenance of vital activities. In order to understand the molecular mechanisms of physiological and pathological activities of cells, especially neurons, in the research of bioscience, especially brain science, it is necessary to use fluorescent calcium indicators to detect the changes of intracellular calcium signals. In drug development, calcium ion channels (such as L-type calcium channel, TRP channel, pizeo channel, CRAC channel, IP) related to various serious diseases are screened on a large scale 3 R and RyR, etc.), various high-throughput screening techniques based on fluorescent calcium indicators are also significantly superior to other approaches.
The GCaMP series calcium indicator prepared by utilizing green fluorescent protein (EGFP), calmodulin and target peptide thereof is a star-level calcium indicating tool, is widely applied in the field of neuroscience, and shows excellent performance in the process of detecting the single action potential of neurons, nerve subcellular signals, neuron discharge and other neuron activities. However, there are still some problems in the GCaMP series tool, for example, the inherent limitations of EGFP cause the following two problems in the improvement and application of GCaMP: 1) EGFP has a broad excitation spectrum and cross-color channels to CFP and YFP, resulting in a limited number of other fluorescence acquisitions that can be used simultaneously with GCaMP, which limits its application in multi-color fluorescence imaging of neurons. 2) The brightness of GCaMP is limited by the upper limit of EGFP fluorescence, which results in that the brightness of GCaMP has reached the optimized limit, and has the disadvantages of weak fluorescence at rest and maximum reaction time, small dynamic range, etc. This has led to slow progress in research relating to weak calcium signals at the sub-cellular level; when the drug screening aiming at the ion channel is carried out, an expensive high-sensitivity fluorescence detection platform is also required to be used, so that the application of the fluorescence detection platform in drug research and development is greatly limited. In conclusion, there is an urgent need to develop a green calcium indicator tool with narrower and brighter spectrum to detect subcellular calcium signals and better perform drug screening for ion channels.
Compared with EGFP, the excitation spectrum of mNeonGreen is very narrow and can be effectively separated from the spectrum of CFP, thereby avoiding the influence of the cross color problem; the mNeonGreen is the brightest known green fluorescent protein at present, the brightness of the mNeonGreen is 2.76 times of that of EGFP, and the signal-to-noise ratio of fluorescence imaging is greatly optimized; the light stability of the mNeonGreen is higher than that of the EGFP, so that the problem of light bleaching can be better solved. In conclusion, mNeon Green is a fluorescent protein with great development value, and can be transformed into a brighter, more sensitive and more stable green calcium indicator protein.
Some of the mNeon Green-engineered calc-indicator proteins have also appeared in the last five years. In 2016, barykina et al made the Calcium Indicator protein NTnC and recorded Calcium signals elicited by single action potentials in neurons (Barykina N V, subach O M, doronin D a, et al, a new design for the acquisition of Calcium signals, with a smaller dynamic range (< 3), i.e., ntc detected only a < 3-fold difference between the maximum and minimum fluorescence signals, with a small amplitude of the change in fluorescence intensity with Calcium concentration, not clearly indicating the change in Calcium signal, far without the GCaMP series sensitivity (the in vitro dynamic range of jGCaMP7c is 146), with a price value applied thereto, on this basis, subach et al made the current brightest green Calcium Indicator protein NTnC (GCaMP 7c, with a fast speed of activation, with a fast speed of gcaamp 7, about 2. The saturation speed of Calcium signal, about 2016. The saturation speed of Calcium signal, about 2. The saturation speed of Calcium signal under the test of phosphor-binding, while still showing the disadvantage of the high speed of the Calcium signal under the pdaxacuminal-binding kinetics of the test, with a fast speed of the voltage of the phosphor-binding protein, with a fast speed of the voltage of the probe, which was still applied to the test of the voltage of subzero.
Disclosure of Invention
The invention provides a set of ultra-sensitive green calcium indicator proteins, which are used for detecting cell calcium signals and screening drugs targeting calcium channels.
In a first aspect, the invention provides a calcium indicator protein which is one or more of:
(1) NEMOm: the amino acid sequence is shown as SEQ ID NO. 3;
(2) NEMOc: the amino acid sequence is shown as SEQ ID NO. 4;
(3) NEMOf: the amino acid sequence is shown as SEQ ID NO. 5;
(4) NEMOs: the amino acid sequence is shown in SEQ ID NO. 6.
In some embodiments, the invention also provides a biomaterial associated with the calcium indicator protein, comprising:
(1) A nucleic acid molecule encoding a calcemic indicator protein of the invention;
(2) Plasmids, cells, etc., comprising the nucleic acid molecules.
In a second aspect, the invention provides a product for detecting calcium signaling or screening for drugs targeting calcium channels, said product comprising a calcium indicator protein of the invention. Preferably, the product is a kit.
In a third aspect, the invention provides the use of a calcium indicator protein or product of the invention for detecting calcium signaling or screening for drugs targeting calcium channels.
In a fourth aspect, there is provided a method of detecting calcium signals, the method comprising the use of a calcium indicator protein or product of the invention.
In a fifth aspect, there is provided a method of screening for a drug targeting a calcium channel, the method comprising the use of a calcium indicator protein or product of the invention.
In some preferred embodiments, the methods and uses of the present invention are for living cells.
The calcium indicator proteins provided by the invention are modified based on NCaMP7, the calcium indicator proteins retain the advantage that the maximum fluorescence of NCaMP7 is far higher than that of GCaMP, and the dynamic range and the reaction speed are both remarkably improved compared with NCaMP 7. The excitation spectrum of the calcium indicator protein is narrower than that of GCaMP series, and the calcium indicator protein can be widely applied to multicolor fluorescence imaging; meanwhile, the dynamic range of the calcium indicator proteins under physiological conditions is improved by nearly 10 times, the calcium concentration can be directly indicated, and the resting fluorescence and the maximum fluorescence can be brighter, so that the tiny calcium signal difference in living cells can be more sensitively detected, and the calcium indicator proteins can be more conveniently applied to related drug screening.
Drawings
FIG. 1 shows the structure of NCaMP7 and the optimization scheme of the NEMO series;
FIG. 2 is a dynamic range test of NEMO, A is 100mM Ca detected using GCaMP6m, NEMOc 2+ Induced SOCE; b is dynamic range of in vitro calcium ion titration test and live cell calcium imaging detection NEMO, and GCaMP6m is subjected to normalization treatment.
FIG. 3 is a fluorescence value test of NEMO, A represents GCaMP6m, NCaMP7 indicates 100mM Ca 2+ Fluorescence change with time upon induced SOCE, B indicates NEMO series indicates 100mM Ca 2+ Fluorescence values over time for induced SOCE.
FIG. 4 is a kinetic assay of NEMO, A-C showing calcium oscillation and dynamic range using GCaMP6m, NCaMP7, NEMOf, D showing comparison of GCaMP6m, NCaMP7, and NEMOf measures the rate of single calcium oscillations, E shows the rate of TG-induced calcium release compared to NCaMP7 and NEMOf measures, and F shows K for GCaMP6m, NCaMP7, and NEMOf in an in vitro kinetic test off 。
FIG. 5 shows the detection result of iPEEAQ method.
Detailed Description
The present disclosure will be described in detail below by way of specific embodiments, but the present disclosure is not limited to the following embodiments.
Unless otherwise specified, the reagents and apparatus used in the following embodiments are conventional in the art and are commercially available; the methods used are all conventional methods in the field, and the person skilled in the art can know how to implement the embodiments without any doubt according to the description of the embodiments and obtain the corresponding results.
Throughout this document, calcemic indicator proteins of the present invention include NEMOm, NEMOc, nemuf, NEMOs, collectively referred to as NEMO series. The application has disclosed the amino acid sequence of these proteins, and the skilled person can deduce the nucleotide sequence of these proteins based on the amino acid sequence and the common general knowledge and prior art in the field, and transform them into cells to express these proteins.
Experimental materials and methods:
1 in vivo assay
1.1 culture of cells
The medium used for the cells was DMEM complete medium supplemented with 10% FBS and 1% P/S, the culture environment was 37 ℃,5% CO 2 The incubator of (1). The cells can be continuously expanded after being attached to the wall, when the confluence degree of the cells reaches about 80%, the cells need to be passaged, and the specific steps are as follows: the dishes on which the cells were aspirated were completely in DMEM with 1/2 of the volume of the medium without Ca 2+ 、Mg 2+ HBSS gently washed the cells twice and the residual medium was washed away. HBSS was aspirated and cells were digested with 0.25% trypsin containing EGTA in 1/10 volume of the medium. When the cell edge becomes bright and the shape becomes round, the new DMEM complete culture medium is used for blowing and beating the cells, and the cells are in a dispersed suspension state while the digestion is stoppedState. Appropriate amount of cells were removed for subsequent experiments, leaving appropriate amount of cells to continue culturing.
1.2 transfection of cells (before Living cell calcium imaging experiment)
Transfection refers to the transfer of foreign genes into eukaryotic cells and their heterologous expression. In this experiment, we used the electrotransfection method to perform gene transfection. The electrotransformation process comprises the following steps:
(1) Digesting the cells, taking out a proper amount of cells, and centrifuging at 800rpm for 5min;
(2) Resuspending the cells with OPTI-MEM at 4 ℃;
(3) Gently mixing the resuspended cells and plasmids, adding into an electric shock cup, and electrically shocking the cells (the volume of an electric transfer system and an electric transfer process used by different types of cells are different, the electric transfer process of the HEK293 cells in the experiment is 400 muL system, 180V,25ms and square wave pulse, and the electric transfer process of the HeLa cells is 500 muL system, 260V,525 muF and exponential decay pulse);
(4) And (3) paving the cells after the electric transformation on a circular glass sheet of a six-hole plate, culturing for about 1h to adhere the cells to the wall, supplementing 1-1.5mL of DMEM complete culture medium to each hole after the cells adhere to the wall, and continuously culturing for 24h to perform fluorescence detection.
1.3 live cell calcium imaging experiments
The composition of the living cell calcium imaging system comprises: light source, power supply for microscope and visible light source, zeiss inverted fluorescence microscope (Axio Observer Z1, ZEISS, germany), camera (ORCA-flash 4.0V 3 digital CMOS camera, C13440-20CU, HAMAMATSU, japan), filter wheel controller (LAMBDA 10-3, sutter instrument, USA), 40-fold objective oil-mirror lens (numerical aperture 1.3, ZEISS, germany), and SemrockFilter system (filter information see table 1) and SlideBook 6 software operating system.
TABLE 1 Filter information
The materials used for the live cell fluorescence imaging experiments are shown in table 2:
table 2: information table of living cell fluorescence imaging experiment material
The solution preparation method comprises the following steps:
(1) Calcium imaging solution: 107mM NaCl, 7.2mM KCl, 1.2mM MgCl 2 20mM HEPES and 11.5mM glucose, adjusted to pH 7.20 with 2M NaOH solution. When simulating extracellular fluid, caCl with the final concentration of 1mM is added into the calcium imaging solution 2 。
(2) TG stock (1 mM): 1.536mL of DMSO was added to 5mg of TG powder, mixed well and dispensed into 1.5mL of EP tubes, and stored in a refrigerator at-20 ℃.
(3) Iono mother liquor (2.5 mM): 564.17. Mu.L of DMSO was added to 1mg of the iono powder, mixed and dissolved, and then dispensed into 1.5mL of EP tubes and stored in a refrigerator at-20 ℃.
(4) CCh mother liquor (100 mM): 54.75mL of ddH was added to 1g of CCh powder 2 O, mixing and dissolving, and subpackaging into 1.5mL EP tubes for storage in a refrigerator at the temperature of-20 ℃.
(5)CaCl 2 Mother liquor (1M): 11.1g of CaCl 2 ddH2O is added into the powder to dissolve, the volume is determined to be 100mL, and the powder is stored at 4 ℃.
(6) EGTA mother liquor (0.5M): weighing 19.02g of EGTA, dissolving in ddH2O, adding a proper amount of NaOH powder to adjust the pH value to assist dissolution, metering the volume to 100mL after the dissolution, and storing at 4 ℃.
The live cell calcium imaging of this study indicated the calcium level and calcium signal of the cells by detecting the fluorescent changes of calcium indicator proteins, the specific experimental steps are as follows:
(1) Calcium indicator protein plasmids are transiently or stably transfected into HEK293 cells in advance, the transfected cells are laid on a round slide, and detection can be carried out after the cells are attached to the wall and the proteins are expressed.
(2) The cell-plated round slide was fixed in a special imaging chamber, and 400. Mu.L of 1mM CaCl was added 2 The calcium imaging solution of (2) is incubated for 20min at rest and then the detection is started. The custom imaging chamber may hold a 24 x 24mm, 0.13-0.17 mm thick circular slide, and at least 400 μ L of imaging solution may be added to the imaging chamber to incubate the cells or induce the cells to produce a calcium signal.
(3) The same excitation light intensity, exposure time and Bin value were used for the experimental and control groups.
(4) Observing the state of the cells by using a bright field light source under an ocular lens, and then observing the transfection efficiency and the resting fluorescence value of the cells under the ocular lens to find the most suitable detection visual field.
(5) And collecting bright field and fluorescence images of the detection field by using SlideBook 6 software, and circling a blank background without cells and a cell region of interest.
(6) And (3) acquiring images at intervals of 2s after the experiment is started, pausing shooting when liquid needs to be changed, gently and quickly sucking out the solution in the imaging tank when the liquid needs to be changed, and adding a new solution to avoid the situation that the liquid is absorbed too hard or cells are dried up.
(7) And (4) after the experiment is finished, deriving a numerical value of the fluorescence value changing along with time, processing data, and repeating the experiment of each group for more than 3 times.
2 in vitro assay
2.1 inducible expression of Calcuim indicator protein
(1) Transetta (DE 3) cells transformed with pET28a-NEMO series, pET28a-NCaMP7 and pET28a-GCaMP6m plasmids were inoculated into approximately 5mL of LB liquid medium and subjected to scale-up culture at 37 ℃ and 200rpm for 12 hours. The 12 h-cultured broth was inoculated into 200mL of LB liquid medium at a volume ratio of 1.25.
(2) Then, IPTG was added to the above bacterial solution at a final concentration of 300. Mu.M to induce the expression of the protein, the culture was carried out at 20 ℃ and 150rpm for 12 hours, and after the induction, the bacterial solution was centrifuged at 9000rpm for 5min to collect the cells.
2.2 extraction and purification of Calcuim indicator protein
Preparing a solution: solution 1:20mM Tris,300mM NaCl,1mM imidazole, (pH = 7.20).
Solution 2:20mM Tris,500mM NaCl,10mM imidazole, (pH = 7.20).
Solution 3:20mM Tris,100mM NaCl,300mM imidazole, (pH = 7.20).
Extraction of total bacterial protein:
(1) The centrifuged cells stored at-20 ℃ were taken out and resuspended in 20mL of solution 1.
(2) And (3) adding lysozyme powder and a rotor into a small beaker, pouring the resuspended thalli, and magnetically stirring on ice for 5-10 min to dissolve cell walls.
(3) A further 800. Mu.L of 200mM PMSF inhibits the protease activity and TritonX-100 at a final concentration of 0.5% dissolves the bacterial cell membranes.
(4) And (3) carrying out ultrasonic disruption on the thalli, wherein the ultrasonic power is 20%, the work time is 3s, the buffering time is 9s, and the ultrasonic treatment is 100 times.
(5) The sonicated cells were centrifuged at 4 ℃ and 9000rpm for 20min.
(6) The precipitate and supernatant are retained for electrophoresis.
Purification of calndin (GECI):
(1) And (3) cleaning the column: about 1mL of nickel column material was added to an affinity chromatography column with a total volume of 6mL, and the column material was washed with 2mL of deionized water and solution 1 in that order.
(2) Binding protein: after mixing the centrifuged supernatant of total protein with the column, the mixed supernatant and column were poured into a 50mL centrifuge tube and mixed on a vertical mixer at 4 ℃ for 1h.
(3) Washing the hybrid protein: the column mixed with the protein was poured into a chromatography column, and after all the liquid was filtered off, the column was washed with 20mL of solution 1, and then with 10mL of solution 2 to wash away the impure protein that was not bound to the column.
(4) Elution GECI: the target protein was eluted with 5mL of solution 3, and the filtrate was collected in a volume of 1mL per wash. The collected purified protein is stored at 4 ℃, and the column material is soaked in the solution 1 and stored at 4 ℃. Before the column is used again, 2mL of 0.5M NaOH and the solution 1 are used for washing the column in sequence, and the column can be reused after washing.
Determination of protein concentration:
(1) Preparing a standard solution: solutions 1 were diluted with 5mg/mL BSA standard and graded to give 1.5, 1, 0.75, 0.5, 0.25 and 0.125mg/mL standards.
(2) Determination of the standard curve: mu.L of the standard solution was added to 750. Mu.L of G250 Coomassie brilliant blue, and the absorbance at 595nm was measured to draw a concentration-absorbance standard curve.
(3) And (3) determining the concentration of the target protein: mu.L of the target protein was added to 750. Mu.L of G250 Coomassie Brilliant blue, the absorbance at 595nm was measured, and the protein concentration was calculated from the standard curve. Identification of GECI after purification:
(1) SDS-PAGE: the purified GECI protein was electrophoresed, and the loading amount was 7. Mu.L. And (4) electrophoresis.
(2) Coomassie blue staining: the gel after electrophoresis was taken out in ddH 2 Shake wash in O for a moment. Stationary liquid (25 mL ethanol, 20 mLH) 2 O, 5mL acetic acid) for 1h. Coomassie brilliant blue R250 was stained for 4h. Washing with the decolorizing solution for 1-2 hr, and replacing the decolorizing solution for several times until the background of the glue is almost completely decolorized.
(3) And scanning and taking a picture. And identifying whether the size of the purified protein is in accordance with the expectation. Experiments were performed with proteins that fit the expectations.
2.3 calcium titration test
The solution used to test cytoplasmic GECI was formulated as follows: solution A:10mM EGTA,100mM KCl,30mM HEPES, pH =7.20. Solution K: solution A +10mM CaCl 2 pH =7.20. Solutions B to J: solutions a and K were mixed according to the proportions in the table below to obtain solutions B to J, pH =7.20. The pH of the above solutions was adjusted with KOH solution, and the concentration of free calcium ion [ Ca ] in each solution 2+ ] free Is calculated as follows (where K d Represents Ca when the solution pH =7.20 and the temperature is 20 deg.C 2+ And dissociation constant between EGTA):
K d =150.5nM
D=[EGTA] total -[Ca 2+ ] total -K d
[Ca 2+ ] free =[-D+(4×K d ×[Ca 2+ ] total +D 2 ) 1/2 ]/2
TABLE 2 preparation method of cytosolic GECI calcium titration experimental solution and concentration of free calcium ions
The in vitro calcium titration test procedure is as follows:
(1) Adding 50 mu g/mL of protein to be detected into the cytoplasm A-K solution, uniformly mixing, and standing for 20min.
(2) The solution mixed with the protein to be tested was added to a full black 96-well plate at a volume of 200. Mu.L per well, with 4 parallel wells for each free calcium concentration. Background fluorescence was detected using a solution a without added protein.
(3) Determination of the different [ Ca ] s using the fluorescent end-point detection mode of the Flexstation 3 microplate reader 2+ ] free Calcium in the solution indicates the fluorescence value of the protein. The excitation/emission light wavelength of GCaMP6m =485/510nm, the excitation/emission light wavelengths of ncamp7 and NEMO series =490/520nm, the pmtgain value was set at 300.
(4) Deriving data, removing background fluorescence value, fitting a curve with fluorescence value changing along with the concentration of free calcium by using Onesite-Specific binding with Hill slope in nonlinear fitting in Prism, and obtaining K after fitting d And Hill value is the calcium affinity K of the calcium indicator protein d And a Hill coefficient.
(5) If it is determined that the calindicator protein contains Mg 2+ When Kd and Hill values are determined, mgCl is added to a final concentration of 1mM when preparing the A-K solutions 2 The solution, the rest steps are the same as (1) - (4)
2.4 kinetic testing
(1) Preparing a solution a:100mM KCl,30mM HEPES, 10. Mu.M CaCl 2 ,pH=7.20。
(2) Adding the protein to be detected into the solution a until the protein concentration is 50 mug/mL, uniformly mixing, and standing for 20min.
(3) The solution mixed with the protein to be detected was added to a full-black 96-well plate, the volume of the solution per well was 100. Mu.L, 4 parallel wells were provided for each calcuim-indicating protein, and the background fluorescence value was detected using the a solution to which no protein was added.
(4) The kinetic dissociation constant Koff of the calcuisine indicator protein was measured using the rapid kinetic test mode of the POLARstar Omega microplate reader from BMG Labtech. Mixing the raw materials in a ratio of 1:1 to the wells to be tested, solution A (10mM EGTA,100mM KCl,30mM HEPES, pH = 7.20) was added at a sampling interval of 0.06s, and the excitation/emission wavelength selected when fluorescence values were collected was 485/520nm.
(5) Deriving data, fitting a curve of the fluorescence value changing along with time by using onechase fix in nonlinear fitting in Prism after removing a background fluorescence value, wherein a K value obtained after fitting is a kinetic dissociation coefficient K of the calcium indicator protein off 。
3Ca 2+ Intermittent quantitative measurement of concentration (iPEEQ)
Ca was performed using a Zeiss laser confocal imaging system (Zeiss LSM880 imaging system, 63 times objective oleoscope lens (numerical aperture 1.4), zen2.1 software system) 2+ Intermittent quantitative measurements of concentration. Intracellular assays were first performed using NEMOf-transfected HEK-293 cells. Before the start of the recording of the calcium signal, a cycle test of photoisomerization was first performed, the cells were continuously irradiated with 488nm excitation light for 25s at each cycle and with 405nm excitation light for 2.5s at the start of the cycle, the range of the emission light received throughout the process was 500-580 nm,5 cycles later the 10. Mu.M CCh-initiated intracellular calcium signal was indicated using NEMOf.
The in vitro calibration curve was then tested using exactly the same equipment and setup as for the cell assay, the nemuf purified protein was incubated with solutions a, E, G, H, I, J, K in table 2, and the nemuf protein was tested in vitro for 8 photoisomerization cycles (Δ F/F) at different free calcium concentrations 0 ) hv Along with Ca 2+ Exponentially fitting the curve of the concentration change to obtain K d1 And hill value h 1 (ii) a In vitro testing of F for NEMOf protein at different free calcium concentrations end Associated with Ca 2+ Exponentially fitting the curve of the concentration change to obtain K d2 And h 2 . Will K d1 、h 1 And cellular calcium releaseMeasured at the last photoisomerization cycle before the end of the discharge test (Δ F/F) 0 ) hv Substituting into equation 1:
wherein F represents (Δ F/F) 0 ) hv ,F diff =F min -F max (minimum and maximum (. DELTA.F/F) of in vitro testing 0 ) hv ). Obtaining free Ca in cells at rest 2+ Concentration [ Ca ] 2+ ] rest . Will K d2 、h 2 And [ Ca 2+ ] rest Into equation 1, where F represents the fluorescence value, F diff =F min -F max (minimum and maximum fluorescence for in vitro tests). Calculating the fluorescence value F of NEMOf corresponding to the calcium concentration of the cells in the resting state rest The actually measured resting fluorescence values F and F in the cell experiment rest Dividing to obtain a calibration coefficient N, dividing all fluorescence values detected in a cell experiment by N for calibration, substituting all the calibrated fluorescence values into the formula, and obtaining [ Ca ] corresponding to each fluorescence value 2+ ]。
Preparation example:
according to the amino acid sequence (SEQ ID NO: 2) and structure of NCaMP7, the NEMO series calcium indicator proteins NEMOm, NEMOc, NEMOf and NEMOs are obtained by modifying the NCaMP 7. The specific modification is shown in fig. 1. Nucleotide sequences of NEMO series proteins (the nucleotide sequences of NEMOm, NEMOc, NEMOf and NEMOs are respectively shown in SEQ ID NO: 9-12) are designed according to the nucleotide sequence of NCaMP7, introduced into plasmids, and transformed into cells for expression. The expressed protein is completely consistent with the expectation through sequence analysis, and the amino acid sequences of NEMOm, NEMOc, NEMOf and NEMOs are respectively shown in SEQ ID NO. 3-6.
Example 1:
according to the method shown in the experimental materials and methods, the live cell calcium imaging experiment is carried out on each calcium indicator protein, and the specific method is as follows: expression of these Calcite proteins in HEK293 cells using a cell line containing 1. Mu. MTG + 2.5. Mu.M ioNo + 300. Mu.M EGTA free of CaCl 2 The cells were treated with the calcium imaging solution for 10min to treat Ca in the endoplasmic reticulum calcium pool of the cells 2+ After the calcuim is completely emptied, the fluorescence intensity of the calcuim indicator protein at the moment is collected, namely the minimum fluorescence intensity (F) of the calcuim indicator protein min ) (ii) a Then 1. Mu.M TG + 2.5. Mu.Miono +100mM Ca was used 2+ The calcium imaging solution of (2) was used to treat cells and detect high calcium (100 mM Ca) 2+ ) During induced SOCE (Store Operated Calcium Entry), calcium indicates the maximum fluorescence intensity of the protein, i.e., the maximum fluorescence intensity (F) max ),F max /F min The ratio of (a) is the dynamic range of the calcium indicator in vivo test.
Then, according to the method shown in the experimental materials and methods, calcium ion titration test is carried out on each calcium indicator protein, and the dynamic range of each calcium indicator protein is detected in an in vitro experiment mode. The specific method comprises the following steps: in calcium titration experiments, 38870nM of free Ca 2+ The fluorescence intensity of the indicator measured under the conditions is recorded as the maximum F max 0nM of free Ca 2+ The fluorescence intensity of the indicator measured under the conditions is recorded as the minimum value F min ,F max /F min The ratio of (a) is the dynamic range of the in vitro test calcium indicator.
NEMOc is a calcium indicator with the greatest dynamic range in the NEMO series, and in vivo testing (live cell calcium imaging experiments) showed NEMOc to be high in calcium (100 mM Ca) 2+ ) During induced SOCE, the maximum calcium signal detected was 25-fold higher than NCaMP7 (FIG. 2A). At the same time, both in vivo (live cell calcium imaging experiments) and in vitro (calcium titration and kinetics) tests showed that the dynamic range of NEMO series calcium indicators was much higher than GCaMP6m and NCaMP7 (as shown in figure 2B).
Example 2: live cell calcium imaging experiments
At saturation of Ca 2+ In the case of (2), the NEMO series exhibited the advantage of having a maximum fluorescence higher than that of GCaMP6m (see FIG. 3), and in vivo testing (live cell calcium imaging experiments) showed that the NEMO series was at high calcium (100 mM Ca) 2+ ) The fluorescence value of the maximum calcium signal detected in the induced SOCE process is far higher than that of GCaMP6m, and the method is suitable for being usedCalcium signal detection in micro-areas such as organelles.
Example 3
Nemuf is the calcium indicator of the fastest response rate in the NEMO series, which is shorter than GCaMP6M and NCaMP7 in response to a single calcium oscillation detected in live cell calcium imaging experiments during 10 μ M CCh-induced calcium oscillations (see fig. 4A-4D); during 1 μ M TG-induced calcium release, the time taken to measure the entire calcium release process was also shorter (fig. 4E). At the same time, in vitro kinetic tests showed the dissociation rate constant K of NEMOf off The results are much higher than those of GCaMP6m and NCaMP7 (as shown in FIG. 4F), and both indicate that NEMOf is the fastest version in the NEMO series and is more suitable for capturing the rapid dynamic change of calcium signals in neurons.
Example 4
Bierbuesse et al showed a relative change in fluorescence of GECI due to reversible photoisomerization of GECI (noted as (Δ F/F) 0 ) hv ) Independent of the amount of GECI expression, only Ca 2+ Is thus directly related to (Δ F/F) after calibration 0 ) hv Quantitative measurement of intracellular Ca 2+ Ca for realizing single fluorescence GECI by concentration and change thereof 2+ Quantitative measurement of concentration (PEAQ). On the basis, the method also develops an intermittent quantitative measurement method (Intermitent PEAQ, iPEEAQ) with slightly low time resolution and more convenient operation, does not continuously trigger the switch of photo-isomerism, and calculates the initial fluorescence value F after completing one PEAQ quantitative measurement 0 Corresponding Ca 2+ Concentration, followed by Ca according to fluorescence 2+ The concentration of GECI is calibrated by a titration curve with the change of concentration, and Ca can be realized by only measuring the fluorescence value of GECI 2+ The quantitative measurement of the concentration greatly reduces phototoxicity and can be used for Ca in certain transient changes 2+ Rapid measurement of concentration.
The photoinduced isomerism characteristic of the NEMO series calcium indicator is detected by using an iPEEAQ method. As shown in FIG. 5A, when NEMOf is in a calcium-free environment, the irradiation of violet light (405 nm) results in an increase in its fluorescence value, (. DELTA.F/F) 0 ) hv Larger, with Ca 2+ Increase in concentration (. DELTA.F/F) 0 ) hv Gradually decrease in high calcium environment (39. Mu.M Ca) 2+ ) The change in fluorescence due to lower photoisomerization is minimal. Combining the photoisomerization characteristics of NEMO with the iPEEAQ method, NEMOf can achieve cytoplasmic Ca after calibration (see the left and right panels of FIG. 5B) 2+ Quantification of concentration indicates that when 10. Mu.M CCh is used to trigger calcium release, the cytosolic calcium level can rise from around 100nM to around 4. Mu.M at rest, as shown in FIG. 5C. The conventional GCaMP6 series calcium probes can only detect the relative change of calcium level before and after stimulation, cannot indicate accurate calcium ion concentration, and thus cannot be used for detecting the change of calcium level or calcium homeostasis. By using the iPEEAQ method, the NEMO series can directly indicate the absolute calcium concentration, so that the relative change of the calcium concentration can be detected, and the resting calcium level and the absolute level and the change of the calcium steady state can be indicated. Therefore, the NEMO tool has wider application range and is superior to GCaMP6 and derivative series thereof.
Sequence information:
GCaMP6m(SEQ ID NO:1):
MGSHHHHHHGMASMTGGQQMGRDLYDDDDKDLATMVDSSRRKWNKTGHAVRAIGRLSSLENVYIKADKQKNGIKANFKIRHNIEDGGVQLAYHYQQNTPIGDGPVLLPDNHYLSVQSKLSKDPNEKRDHMVLLEFVTAAGITLGMDELYKGGTGGSMVSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLTYGVQCFSRYPDHMKQHDFFKSAMPEGYIQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNLPDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLTMMARKGSYRDTEEEIREAFGVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK
NCaMP7(SEQ ID NO:2):
MVSKGEEENMASLPATHELHIFGSINGIDFDMVGQGTGNPNDGYEELNLKSTMGDLQFSPWILVPHIGYGFHQYLPYPDGMSPFQAAMVDGSGYQVHRTMQFEDGASLTVNYRYTYEGSHIKGEAQVEGTGFPADGPVMTNSLTAEAHDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELRVMIIEVDADGDGTLDFPEFLAMMARKMKYRDTEEEIREAFGVFDKDGNGYIGAAELRHVMTNLGEKLTDEEVGELIREADIDGDGQVNYEEFVQMMTAKGGSGGGSSSRRKWNKAGHAVRAIGRLSSMYFADWCVSKKTCPNDKTIVSTFKWAFITDNGKRYRSTARTTYTFAKPMAANYLKNQPMYVFRKTELKHSKTELNFKEWQKAFTDVMGMDELYK
NEMOm(SEQ ID NO:3):
MLQNELALKLAGLDINKTGGGSHHHHHHVSKGEEENMASLPATHELHIFGSINGIDFDMVGQGTGNPNDGYEELNLKSTMGDLQFSPWILVPHIGYGFHQYLPYPDGMSPFQAAMVDGSGYQVHRTMQFEDGASLTVNYRYTYEGSHIKGEAQVEGTGFPADGPVMTNSLTAEAHDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELRVMIIEVDADGDGTLDFPEFLAMMARKMKYRDTEEEIREAFGVFDKDGNGYIGAAELRHVMTNLGEKLTDEEVGELIREADIDGDGQVNYEEFVQMMTAKGGSGGSRRKWNKAGHAVRAIGRLSSIYFADWCVSKKTCPNDKTIVSTFKWAFITDNGKRYRSTARTTYTFAKPMAANYLKNQPMYVFRKTELKHSKTELNFKEWQKAFTDVMGMDELYK
NEMOc(SEQ ID NO:4):
MHHHHHHVSKGEEENMASLPATHELHIFGSINGIDFDMVGQGTGNPNDGYEELNLKSTMGDLQFSPWILVPHIGYGFHQYLPYPDGMSPFQAAMVDGSGYQVHRTMQFEDGASLTVNYRYTYEGSHIKGEAQVEGTGFPADGPVMTNSLTAEAHDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELRVMIIEVDADGDGTLDFPEFLAMMARKMKYRDTEEEIREAFGVFDKDGNGYIGAAELRHVMTNLGEKLTDEEVGELIREADIDGDGQVNYEEFVQMMTAKGGGGSRRKWNKAGHAVRAIGRLSSIYFADWCVSKKTCPNDKTIVSTFKWAFITDNGKRYRSTARTTYTFAKPMAANYLKNQPMYVFRKTELKHSKTELNFKEWQKAFTDVMGMDELYK
NEMOf(SEQ ID NO:5):
MLQNELALKLAGLDINKTGGGSHHHHHHVSKGEEENMASLPATHELHIFGSINGIDFDMVGQGTGNPNDGYEELNLKSTMGDLQFSPWILVPHIGYGFHQYLPYPDGMSPFQAAMVDGSGYQVHRTMQFEDGASLTVNYRYTYEGSHIKGEAQVEGTGFPADGPVMTNSLTAEAHDDLTEEQIAEFKEEFSLFDKDGDGTITTKELGTVFRSLGQNPTEAELRVMIIEVDADGDGTLDFPEFLAMMARKMKYRDTEEEIREAFGVFDKDGNGYIGAAELRHVMTNLGEKLTDEEVGELIREADIDGDGQVNYEEFVQMMTAKGGGGSRRKWNKAGHAVRAIGRLSSIYFADWCVSKKTCPNDKTIVSTFKWAFITDNGKRYRSTARTTYTFAKPMAANYLKNQPMYVFRKTELKHSKTELNFKEWQKAFTDVMGMDELYK
NEMOs(SEQ ID NO:6):
MLQNELALKLAGLDINKTGGITLGMDELYKMHHHHHHVSKGEEENMASLPATHELHIFGSINGIDFDMVGQGTGNPNDGYEELNLKSTMGDLQFSPWILVPHIGYGFHQYLPYPDGMSPFQAAMVDGSGYQVHRTMQFEDGASLTVNYRYTYEGSHIKGEAQVEGTGFPADGPVMTNSLTAEAHDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELRVMIIEVDADGDGTLDFPEFLAMMARKMKYRDTEEEIREAFGVFDKDGNGYIGAAELRHVMTNLGEKLTDEEVGELIREADIDGDGQVNYEEFVQMMTAKGGSGGGSSSRRKWNKAGHAVRAIGRLSSIYFADWCVSKKTCPNDKTIVSTFKWAFITDNGKRYRSTARTTYTFAKPMAANYLKNQPMYVFRKTELKHSKTELNFKEWQKAFTDVMGMDELYK
nucleotide sequence information:
GCaMP6m(SEQ ID NO:7):
ATGGGTTCTCATCATCATCATCATCATGGTATGGCTAGCATGACTGGTGGACAGCAAATGGGTCGGGATCTGTACGACGATGACGATAAGGATCTCGCCACCATGGTCGACTCATCACGTCGTAAGTGGAATAAGACAGGTCACGCAGTCAGAGCTATAGGTCGGCTGAGCTCACTCGAGAACGTCTATATCAAGGCCGACAAGCAGAAGAACGGCATCAAGGCGAACTTCAAGATCCGCCACAACATCGAGGACGGCGGCGTGCAGCTCGCCTACCACTACCAGCAGAACACCCCCATCGGCGACGGCCCCGTGCTGCTGCCCGACAACCACTACCTGAGCGTGCAGTCCAAACTTTCGAAAGACCCCAACGAGAAGCGCGATCACATGGTCCTGCTGGAGTTCGTGACCGCCGCCGGGATCACTCTCGGCATGGACGAGCTGTACAAGGGCGGTACCGGAGGGAGCATGGTGAGCAAGGGCGAGGAGCTGTTCACCGGGGTGGTGCCCATCCTGGTCGAGCTGGACGGCGACGTAAACGGCCACAAGTTCAGCGTGTCCGGCGAGGGTGAGGGCGATGCCACCTACGGCAAGCTGACCCTGAAGTTCATCTGCACCACCGGCAAGCTGCCCGTGCCCTGGCCCACCCTCGTGACCACCCTGACCTACGGCGTGCAGTGCTTCAGCCGCTACCCCGACCACATGAAGCAGCACGACTTCTTCAAGTCCGCCATGCCCGAAGGCTACATCCAGGAGCGCACCATCTTCTTCAAGGACGACGGCAACTACAAGACCCGCGCCGAGGTGAAGTTCGAGGGCGACACCCTGGTGAACCGCATCGAGCTGAAGGGCATCGACTTCAAGGAGGACGGCAACATCCTGGGGCACAAGCTGGAGTACAACCTGCCGGACCAACTGACTGAAGAGCAGATCGCAGAATTTAAAGAGGCTTTCTCCCTATTTGACAAGGACGGGGATGGGACAATAACAACCAAGGAGCTGGGGACGGTGATGCGGTCTCTGGGGCAGAACCCCACAGAAGCAGAGCTGCAGGACATGATCAATGAAGTAGATGCCGACGGTGACGGCACAATCGACTTCCCTGAGTTCCTGACAATGATGGCAAGAAAAGGGAGCTACAGGGACACGGAAGAAGAAATTAGAGAAGCGTTCGGTGTGTTTGATAAGGATGGCAATGGCTACATCAGTGCAGCAGAGCTTCGCCACGTGATGACAAACCTTGGAGAGAAGTTAACAGATGAAGAGGTTGATGAAATGATCAGGGAAGCAGACATCGATGGGGATGGTCAGGTAAACTACGAAGAGTTTGTACAAATGATGACAGCGAAG
NCaMP7(SEQ ID NO:8):
ATGGTGAGCAAGGGCGAGGAGGAGAACATGGCCAGCCTGCCTGCTACACATGAACTGCACATTTTTGGAAGCATCAACGGCATCGACTTCGACATGGTGGGCCAGGGCACTGGAAATCCTAATGACGGATACGAGGAGCTGAATCTGAAGAGCACCATGGGCGACCTGCAGTTCAGCCCCTGGATACTGGTGCCTCATATTGGCTATGGCTTCCACCAATACCTGCCCTACCCCGACGGAATGAGCCCCTTTCAAGCTGCCATGGTGGATGGCAGCGGATACCAAGTGCATAGAACCATGCAGTTCGAGGACGGCGCCAGCCTTACAGTGAATTATAGATATACCTACGAGGGCAGCCACATCAAGGGCGAGGCACAAGTGGAAGGCACAGGATTTCCCGCTGATGGCCCCGTGATGACCAATAGCCTGACCGCTGAAGCCCACGACCAGCTGACAGAAGAACAGATCGCCGAATTCAAGGAGGCCTTTAGCCTGTTCGACAAGGACGGCGACGGCACCATTACCACAAAAGAGCTGGGCACAGTGATGAGAAGCCTGGGCCAAAATCCCACAGAAGCTGAGCTGAGAGTGATGATCATCGAGGTGGACGCCGACGGCGATGGAACACTGGATTTTCCTGAATTTCTGGCCATGATGGCCAGAAAGATGAAGTACAGAGACACCGAGGAGGAGATCAGAGAGGCCTTCGGCGTGTTTGACAAGGACGGCAATGGATACATTGGCGCCGCTGAACTGAGACACGTGATGACCAATCTGGGCGAGAAGCTGACCGACGAGGAGGTGGGAGAACTGATCAGAGAGGCTGACATTGACGGCGACGGCCAGGTGAATTATGAGGAGTTTGTGCAGATGATGACCGCCAAGGGCGGCAGCGGAGGAGGAAGCAGCAGCAGAAGAAAATGGAATAAGGCCGGCCACGCCGTGAGAGCCATTGGCAGACTTTCTAGCATGTACTTCGCCGACTGGTGCGTGAGCAAGAAGACCTGCCCTAACGACAAGACCATCGTGAGCACCTTCAAGTGGGCCTTCATCACCGACAACGGCAAGAGATACAGAAGCACCGCCAGAACCACCTACACCTTCGCCAAACCCATGGCCGCTAACTACCTGAAGAACCAGCCCATGTACGTGTTCAGAAAGACCGAGCTGAAGCACAGCAAGACCGAGCTGAACTTCAAGGAGTGGCAGAAGGCCTTCACCGACGTGATGGGCATGGACGAGCTGTACAAG
NEMOm(SEQ ID NO:9):
ATGCTGCAGAACGAGCTTGCTCTTAAGTTGGCTGGACTTGATATTAACAAGACTGGAGGAGGTTCTCATCATCATCATCATCATGTGAGCAAGGGCGAGGAGGAGAACATGGCCAGCCTGCCTGCTACACATGAACTGCACATTTTTGGAAGCATCAACGGCATCGACTTCGACATGGTGGGCCAGGGCACTGGAAATCCTAATGACGGATACGAGGAGCTGAATCTGAAGAGCACCATGGGCGACCTGCAGTTCAGCCCCTGGATACTGGTGCCTCATATTGGCTATGGCTTCCACCAATACCTGCCCTACCCCGACGGAATGAGCCCCTTTCAAGCTGCCATGGTGGATGGCAGCGGATACCAAGTGCATAGAACCATGCAGTTCGAGGACGGCGCCAGCCTTACAGTGAATTATAGATATACCTACGAGGGCAGCCACATCAAGGGCGAGGCACAAGTGGAAGGCACAGGATTTCCCGCTGATGGCCCCGTGATGACCAATAGCCTGACCGCTGAAGCCCACGACCAGCTGACAGAAGAACAGATCGCCGAATTCAAGGAGGCCTTTAGCCTGTTCGACAAGGACGGCGACGGCACCATTACCACAAAAGAGCTGGGCACAGTGATGAGAAGCCTGGGCCAAAATCCCACAGAAGCTGAGCTGAGAGTGATGATCATCGAGGTGGACGCCGACGGCGATGGAACACTGGATTTTCCTGAATTTCTGGCCATGATGGCCAGAAAGATGAAGTACAGAGACACCGAGGAGGAGATCAGAGAGGCCTTCGGCGTGTTTGACAAGGACGGCAATGGATACATTGGCGCCGCTGAACTGAGACACGTGATGACCAATCTGGGCGAGAAGCTGACCGACGAGGAGGTGGGAGAACTGATCAGAGAGGCTGACATTGACGGCGACGGCCAGGTGAATTATGAGGAGTTTGTGCAGATGATGACCGCCAAGGGCGGCAGCGGAGGAAGCAGAAGAAAATGGAATAAGGCCGGCCACGCCGTGAGAGCCATTGGCAGACTTTCTAGCATCTACTTCGCCGACTGGTGCGTGAGCAAGAAGACCTGCCCTAACGACAAGACCATCGTGAGCACCTTCAAGTGGGCCTTCATCACCGACAACGGCAAGAGATACAGAAGCACCGCCAGAACCACCTACACCTTCGCCAAACCCATGGCCGCTAACTACCTGAAGAACCAGCCCATGTACGTGTTCAGAAAGACCGAGCTGAAGCACAGCAAGACCGAGCTGAACTTCAAGGAGTGGCAGAAGGCCTTCACCGACGTGATGGGCATGGACGAGCTGTACAAG
NEMOc(SEQ ID NO:10):
ATGCATCATCATCATCATCATGTGAGCAAGGGCGAGGAGGAGAACATGGCCAGCCTGCCTGCTACACATGAACTGCACATTTTTGGAAGCATCAACGGCATCGACTTCGACATGGTGGGCCAGGGCACTGGAAATCCTAATGACGGATACGAGGAGCTGAATCTGAAGAGCACCATGGGCGACCTGCAGTTCAGCCCCTGGATACTGGTGCCTCATATTGGCTATGGCTTCCACCAATACCTGCCCTACCCCGACGGAATGAGCCCCTTTCAAGCTGCCATGGTGGATGGCAGCGGATACCAAGTGCATAGAACCATGCAGTTCGAGGACGGCGCCAGCCTTACAGTGAATTATAGATATACCTACGAGGGCAGCCACATCAAGGGCGAGGCACAAGTGGAAGGCACAGGATTTCCCGCTGATGGCCCCGTGATGACCAATAGCCTGACCGCTGAAGCCCACGACCAGCTGACAGAAGAACAGATCGCCGAATTCAAGGAGGCCTTTAGCCTGTTCGACAAGGACGGCGACGGCACCATTACCACAAAAGAGCTGGGCACAGTGATGAGAAGCCTGGGCCAAAATCCCACAGAAGCTGAGCTGAGAGTGATGATCATCGAGGTGGACGCCGACGGCGATGGAACACTGGATTTTCCTGAATTTCTGGCCATGATGGCCAGAAAGATGAAGTACAGAGACACCGAGGAGGAGATCAGAGAGGCCTTCGGCGTGTTTGACAAGGACGGCAATGGATACATTGGCGCCGCTGAACTGAGACACGTGATGACCAATCTGGGCGAGAAGCTGACCGACGAGGAGGTGGGAGAACTGATCAGAGAGGCTGACATTGACGGCGACGGCCAGGTGAATTATGAGGAGTTTGTGCAGATGATGACCGCCAAGGGCGGCGGAGGCAGCAGAAGAAAATGGAATAAGGCCGGCCACGCCGTGAGAGCCATTGGCAGACTTTCTAGCATCTACTTCGCCGACTGGTGCGTGAGCAAGAAGACCTGCCCTAACGACAAGACCATCGTGAGCACCTTCAAGTGGGCCTTCATCACCGACAACGGCAAGAGATACAGAAGCACCGCCAGAACCACCTACACCTTCGCCAAACCCATGGCCGCTAACTACCTGAAGAACCAGCCCATGTACGTGTTCAGAAAGACCGAGCTGAAGCACAGCAAGACCGAGCTGAACTTCAAGGAGTGGCAGAAGGCCTTCACCGACGTGATGGGCATGGACGAGCTGTACAAG
NEMOf(SEQ ID NO:11):
ATGCTGCAGAACGAGCTTGCTCTTAAGTTGGCTGGACTTGATATTAACAAGACTGGAGGAGGTTCTCATCATCATCATCATCATGTGAGCAAGGGCGAGGAGGAGAACATGGCCAGCCTGCCTGCTACACATGAACTGCACATTTTTGGAAGCATCAACGGCATCGACTTCGACATGGTGGGCCAGGGCACTGGAAATCCTAATGACGGATACGAGGAGCTGAATCTGAAGAGCACCATGGGCGACCTGCAGTTCAGCCCCTGGATACTGGTGCCTCATATTGGCTATGGCTTCCACCAATACCTGCCCTACCCCGACGGAATGAGCCCCTTTCAAGCTGCCATGGTGGATGGCAGCGGATACCAAGTGCATAGAACCATGCAGTTCGAGGACGGCGCCAGCCTTACAGTGAATTATAGATATACCTACGAGGGCAGCCACATCAAGGGCGAGGCACAAGTGGAAGGCACAGGATTTCCCGCTGATGGCCCCGTGATGACCAATAGCCTGACCGCTGAAGCCCACGACGATCTGACAGAAGAACAGATCGCCGAATTCAAGGAGGAGTTTAGCCTGTTCGACAAGGACGGCGACGGCACCATTACCACAAAAGAGCTGGGCACAGTGTTCAGAAGCCTGGGCCAAAATCCCACAGAAGCTGAGCTGAGAGTGATGATCATCGAGGTGGACGCCGACGGCGATGGAACACTGGATTTTCCTGAATTTCTGGCCATGATGGCCAGAAAGATGAAGTACAGAGACACCGAGGAGGAGATCAGAGAGGCCTTCGGCGTGTTTGACAAGGACGGCAATGGATACATTGGCGCCGCTGAACTGAGACACGTGATGACCAATCTGGGCGAGAAGCTGACCGACGAGGAGGTGGGAGAACTGATCAGAGAGGCTGACATTGACGGCGACGGCCAGGTGAATTATGAGGAGTTTGTGCAGATGATGACCGCCAAGGGCGGCGGAGGCAGCAGAAGAAAATGGAATAAGGCCGGCCACGCCGTGAGAGCCATTGGCAGACTTTCTAGCATCTACTTCGCCGACTGGTGCGTGAGCAAGAAGACCTGCCCTAACGACAAGACCATCGTGAGCACCTTCAAGTGGGCCTTCATCACCGACAACGGCAAGAGATACAGAAGCACCGCCAGAACCACCTACACCTTCGCCAAACCCATGGCCGCTAACTACCTGAAGAACCAGCCCATGTACGTGTTCAGAAAGACCGAGCTGAAGCACAGCAAGACCGAGCTGAACTTCAAGGAGTGGCAGAAGGCCTTCACCGACGTGATGGGCATGGACGAGCTGTACAAG
NEMOs(SEQ ID NO:12):
ATGCTGCAGAACGAGCTTGCTCTTAAGTTGGCTGGACTTGATATTAACAAGACTGGAGGGATCACTCTCGGCATGGACGAGCTTTACAAGATGCATCATCATCATCATCATGTGAGCAAGGGCGAGGAGGAGAACATGGCCAGCCTGCCTGCTACACATGAACTGCACATTTTTGGAAGCATCAACGGCATCGACTTCGACATGGTGGGCCAGGGCACTGGAAATCCTAATGACGGATACGAGGAGCTGAATCTGAAGAGCACCATGGGCGACCTGCAGTTCAGCCCCTGGATACTGGTGCCTCATATTGGCTATGGCTTCCACCAATACCTGCCCTACCCCGACGGAATGAGCCCCTTTCAAGCTGCCATGGTGGATGGCAGCGGATACCAAGTGCATAGAACCATGCAGTTCGAGGACGGCGCCAGCCTTACAGTGAATTATAGATATACCTACGAGGGCAGCCACATCAAGGGCGAGGCACAAGTGGAAGGCACAGGATTTCCCGCTGATGGCCCCGTGATGACCAATAGCCTGACCGCTGAAGCCCACGACCAGCTGACAGAAGAACAGATCGCCGAATTCAAGGAGGCCTTTAGCCTGTTCGACAAGGACGGCGACGGCACCATTACCACAAAAGAGCTGGGCACAGTGATGAGAAGCCTGGGCCAAAATCCCACAGAAGCTGAGCTGAGAGTGATGATCATCGAGGTGGACGCCGACGGCGATGGAACACTGGATTTTCCTGAATTTCTGGCCATGATGGCCAGAAAGATGAAGTACAGAGACACCGAGGAGGAGATCAGAGAGGCCTTCGGCGTGTTTGACAAGGACGGCAATGGATACATTGGCGCCGCTGAACTGAGACACGTGATGACCAATCTGGGCGAGAAGCTGACCGACGAGGAGGTGGGAGAACTGATCAGAGAGGCTGACATTGACGGCGACGGCCAGGTGAATTATGAGGAGTTTGTGCAGATGATGACCGCCAAGGGCGGCAGCGGAGGAGGAAGCAGCAGCAGAAGAAAATGGAATAAGGCCGGCCACGCCGTGAGAGCCATTGGCAGACTTTCTAGCATCTACTTCGCCGACTGGTGCGTGAGCAAGAAGACCTGCCCTAACGACAAGACCATCGTGAGCACCTTCAAGTGGGCCTTCATCACCGACAACGGCAAGAGATACAGAAGCACCGCCAGAACCACCTACACCTTCGCCAAACCCATGGCCGCTAACTACCTGAAGAACCAGCCCATGTACGTGTTCAGAAAGACCGAGCTGAAGCACAGCAAGACCGAGCTGAACTTCAAGGAGTGGCAGAAGGCCTTCACCGACGTGATGGGCATGGACGAGCTGTACAAG。
sequence listing
<110> university of Beijing teachers
<120> calcium indication tool for intracellular calcium signal detection and related drug screening and application thereof
<130> DSP1F213334ZJ
<160> 12
<170> SIPOSequenceListing 1.0
<210> 1
<211> 450
<212> PRT
<213> Artificial Sequence (Artificial Sequence)
<400> 1
Met Gly Ser His His His His His His Gly Met Ala Ser Met Thr Gly
1 5 10 15
Gly Gln Gln Met Gly Arg Asp Leu Tyr Asp Asp Asp Asp Lys Asp Leu
20 25 30
Ala Thr Met Val Asp Ser Ser Arg Arg Lys Trp Asn Lys Thr Gly His
35 40 45
Ala Val Arg Ala Ile Gly Arg Leu Ser Ser Leu Glu Asn Val Tyr Ile
50 55 60
Lys Ala Asp Lys Gln Lys Asn Gly Ile Lys Ala Asn Phe Lys Ile Arg
65 70 75 80
His Asn Ile Glu Asp Gly Gly Val Gln Leu Ala Tyr His Tyr Gln Gln
85 90 95
Asn Thr Pro Ile Gly Asp Gly Pro Val Leu Leu Pro Asp Asn His Tyr
100 105 110
Leu Ser Val Gln Ser Lys Leu Ser Lys Asp Pro Asn Glu Lys Arg Asp
115 120 125
His Met Val Leu Leu Glu Phe Val Thr Ala Ala Gly Ile Thr Leu Gly
130 135 140
Met Asp Glu Leu Tyr Lys Gly Gly Thr Gly Gly Ser Met Val Ser Lys
145 150 155 160
Gly Glu Glu Leu Phe Thr Gly Val Val Pro Ile Leu Val Glu Leu Asp
165 170 175
Gly Asp Val Asn Gly His Lys Phe Ser Val Ser Gly Glu Gly Glu Gly
180 185 190
Asp Ala Thr Tyr Gly Lys Leu Thr Leu Lys Phe Ile Cys Thr Thr Gly
195 200 205
Lys Leu Pro Val Pro Trp Pro Thr Leu Val Thr Thr Leu Thr Tyr Gly
210 215 220
Val Gln Cys Phe Ser Arg Tyr Pro Asp His Met Lys Gln His Asp Phe
225 230 235 240
Phe Lys Ser Ala Met Pro Glu Gly Tyr Ile Gln Glu Arg Thr Ile Phe
245 250 255
Phe Lys Asp Asp Gly Asn Tyr Lys Thr Arg Ala Glu Val Lys Phe Glu
260 265 270
Gly Asp Thr Leu Val Asn Arg Ile Glu Leu Lys Gly Ile Asp Phe Lys
275 280 285
Glu Asp Gly Asn Ile Leu Gly His Lys Leu Glu Tyr Asn Leu Pro Asp
290 295 300
Gln Leu Thr Glu Glu Gln Ile Ala Glu Phe Lys Glu Ala Phe Ser Leu
305 310 315 320
Phe Asp Lys Asp Gly Asp Gly Thr Ile Thr Thr Lys Glu Leu Gly Thr
325 330 335
Val Met Arg Ser Leu Gly Gln Asn Pro Thr Glu Ala Glu Leu Gln Asp
340 345 350
Met Ile Asn Glu Val Asp Ala Asp Gly Asp Gly Thr Ile Asp Phe Pro
355 360 365
Glu Phe Leu Thr Met Met Ala Arg Lys Gly Ser Tyr Arg Asp Thr Glu
370 375 380
Glu Glu Ile Arg Glu Ala Phe Gly Val Phe Asp Lys Asp Gly Asn Gly
385 390 395 400
Tyr Ile Ser Ala Ala Glu Leu Arg His Val Met Thr Asn Leu Gly Glu
405 410 415
Lys Leu Thr Asp Glu Glu Val Asp Glu Met Ile Arg Glu Ala Asp Ile
420 425 430
Asp Gly Asp Gly Gln Val Asn Tyr Glu Glu Phe Val Gln Met Met Thr
435 440 445
Ala Lys
450
<210> 2
<211> 417
<212> PRT
<213> Artificial Sequence (Artificial Sequence)
<400> 2
Met Val Ser Lys Gly Glu Glu Glu Asn Met Ala Ser Leu Pro Ala Thr
1 5 10 15
His Glu Leu His Ile Phe Gly Ser Ile Asn Gly Ile Asp Phe Asp Met
20 25 30
Val Gly Gln Gly Thr Gly Asn Pro Asn Asp Gly Tyr Glu Glu Leu Asn
35 40 45
Leu Lys Ser Thr Met Gly Asp Leu Gln Phe Ser Pro Trp Ile Leu Val
50 55 60
Pro His Ile Gly Tyr Gly Phe His Gln Tyr Leu Pro Tyr Pro Asp Gly
65 70 75 80
Met Ser Pro Phe Gln Ala Ala Met Val Asp Gly Ser Gly Tyr Gln Val
85 90 95
His Arg Thr Met Gln Phe Glu Asp Gly Ala Ser Leu Thr Val Asn Tyr
100 105 110
Arg Tyr Thr Tyr Glu Gly Ser His Ile Lys Gly Glu Ala Gln Val Glu
115 120 125
Gly Thr Gly Phe Pro Ala Asp Gly Pro Val Met Thr Asn Ser Leu Thr
130 135 140
Ala Glu Ala His Asp Gln Leu Thr Glu Glu Gln Ile Ala Glu Phe Lys
145 150 155 160
Glu Ala Phe Ser Leu Phe Asp Lys Asp Gly Asp Gly Thr Ile Thr Thr
165 170 175
Lys Glu Leu Gly Thr Val Met Arg Ser Leu Gly Gln Asn Pro Thr Glu
180 185 190
Ala Glu Leu Arg Val Met Ile Ile Glu Val Asp Ala Asp Gly Asp Gly
195 200 205
Thr Leu Asp Phe Pro Glu Phe Leu Ala Met Met Ala Arg Lys Met Lys
210 215 220
Tyr Arg Asp Thr Glu Glu Glu Ile Arg Glu Ala Phe Gly Val Phe Asp
225 230 235 240
Lys Asp Gly Asn Gly Tyr Ile Gly Ala Ala Glu Leu Arg His Val Met
245 250 255
Thr Asn Leu Gly Glu Lys Leu Thr Asp Glu Glu Val Gly Glu Leu Ile
260 265 270
Arg Glu Ala Asp Ile Asp Gly Asp Gly Gln Val Asn Tyr Glu Glu Phe
275 280 285
Val Gln Met Met Thr Ala Lys Gly Gly Ser Gly Gly Gly Ser Ser Ser
290 295 300
Arg Arg Lys Trp Asn Lys Ala Gly His Ala Val Arg Ala Ile Gly Arg
305 310 315 320
Leu Ser Ser Met Tyr Phe Ala Asp Trp Cys Val Ser Lys Lys Thr Cys
325 330 335
Pro Asn Asp Lys Thr Ile Val Ser Thr Phe Lys Trp Ala Phe Ile Thr
340 345 350
Asp Asn Gly Lys Arg Tyr Arg Ser Thr Ala Arg Thr Thr Tyr Thr Phe
355 360 365
Ala Lys Pro Met Ala Ala Asn Tyr Leu Lys Asn Gln Pro Met Tyr Val
370 375 380
Phe Arg Lys Thr Glu Leu Lys His Ser Lys Thr Glu Leu Asn Phe Lys
385 390 395 400
Glu Trp Gln Lys Ala Phe Thr Asp Val Met Gly Met Asp Glu Leu Tyr
405 410 415
Lys
<210> 3
<211> 441
<212> PRT
<213> Artificial Sequence (Artificial Sequence)
<400> 3
Met Leu Gln Asn Glu Leu Ala Leu Lys Leu Ala Gly Leu Asp Ile Asn
1 5 10 15
Lys Thr Gly Gly Gly Ser His His His His His His Val Ser Lys Gly
20 25 30
Glu Glu Glu Asn Met Ala Ser Leu Pro Ala Thr His Glu Leu His Ile
35 40 45
Phe Gly Ser Ile Asn Gly Ile Asp Phe Asp Met Val Gly Gln Gly Thr
50 55 60
Gly Asn Pro Asn Asp Gly Tyr Glu Glu Leu Asn Leu Lys Ser Thr Met
65 70 75 80
Gly Asp Leu Gln Phe Ser Pro Trp Ile Leu Val Pro His Ile Gly Tyr
85 90 95
Gly Phe His Gln Tyr Leu Pro Tyr Pro Asp Gly Met Ser Pro Phe Gln
100 105 110
Ala Ala Met Val Asp Gly Ser Gly Tyr Gln Val His Arg Thr Met Gln
115 120 125
Phe Glu Asp Gly Ala Ser Leu Thr Val Asn Tyr Arg Tyr Thr Tyr Glu
130 135 140
Gly Ser His Ile Lys Gly Glu Ala Gln Val Glu Gly Thr Gly Phe Pro
145 150 155 160
Ala Asp Gly Pro Val Met Thr Asn Ser Leu Thr Ala Glu Ala His Asp
165 170 175
Gln Leu Thr Glu Glu Gln Ile Ala Glu Phe Lys Glu Ala Phe Ser Leu
180 185 190
Phe Asp Lys Asp Gly Asp Gly Thr Ile Thr Thr Lys Glu Leu Gly Thr
195 200 205
Val Met Arg Ser Leu Gly Gln Asn Pro Thr Glu Ala Glu Leu Arg Val
210 215 220
Met Ile Ile Glu Val Asp Ala Asp Gly Asp Gly Thr Leu Asp Phe Pro
225 230 235 240
Glu Phe Leu Ala Met Met Ala Arg Lys Met Lys Tyr Arg Asp Thr Glu
245 250 255
Glu Glu Ile Arg Glu Ala Phe Gly Val Phe Asp Lys Asp Gly Asn Gly
260 265 270
Tyr Ile Gly Ala Ala Glu Leu Arg His Val Met Thr Asn Leu Gly Glu
275 280 285
Lys Leu Thr Asp Glu Glu Val Gly Glu Leu Ile Arg Glu Ala Asp Ile
290 295 300
Asp Gly Asp Gly Gln Val Asn Tyr Glu Glu Phe Val Gln Met Met Thr
305 310 315 320
Ala Lys Gly Gly Ser Gly Gly Ser Arg Arg Lys Trp Asn Lys Ala Gly
325 330 335
His Ala Val Arg Ala Ile Gly Arg Leu Ser Ser Ile Tyr Phe Ala Asp
340 345 350
Trp Cys Val Ser Lys Lys Thr Cys Pro Asn Asp Lys Thr Ile Val Ser
355 360 365
Thr Phe Lys Trp Ala Phe Ile Thr Asp Asn Gly Lys Arg Tyr Arg Ser
370 375 380
Thr Ala Arg Thr Thr Tyr Thr Phe Ala Lys Pro Met Ala Ala Asn Tyr
385 390 395 400
Leu Lys Asn Gln Pro Met Tyr Val Phe Arg Lys Thr Glu Leu Lys His
405 410 415
Ser Lys Thr Glu Leu Asn Phe Lys Glu Trp Gln Lys Ala Phe Thr Asp
420 425 430
Val Met Gly Met Asp Glu Leu Tyr Lys
435 440
<210> 4
<211> 419
<212> PRT
<213> Artificial Sequence (Artificial Sequence)
<400> 4
Met His His His His His His Val Ser Lys Gly Glu Glu Glu Asn Met
1 5 10 15
Ala Ser Leu Pro Ala Thr His Glu Leu His Ile Phe Gly Ser Ile Asn
20 25 30
Gly Ile Asp Phe Asp Met Val Gly Gln Gly Thr Gly Asn Pro Asn Asp
35 40 45
Gly Tyr Glu Glu Leu Asn Leu Lys Ser Thr Met Gly Asp Leu Gln Phe
50 55 60
Ser Pro Trp Ile Leu Val Pro His Ile Gly Tyr Gly Phe His Gln Tyr
65 70 75 80
Leu Pro Tyr Pro Asp Gly Met Ser Pro Phe Gln Ala Ala Met Val Asp
85 90 95
Gly Ser Gly Tyr Gln Val His Arg Thr Met Gln Phe Glu Asp Gly Ala
100 105 110
Ser Leu Thr Val Asn Tyr Arg Tyr Thr Tyr Glu Gly Ser His Ile Lys
115 120 125
Gly Glu Ala Gln Val Glu Gly Thr Gly Phe Pro Ala Asp Gly Pro Val
130 135 140
Met Thr Asn Ser Leu Thr Ala Glu Ala His Asp Gln Leu Thr Glu Glu
145 150 155 160
Gln Ile Ala Glu Phe Lys Glu Ala Phe Ser Leu Phe Asp Lys Asp Gly
165 170 175
Asp Gly Thr Ile Thr Thr Lys Glu Leu Gly Thr Val Met Arg Ser Leu
180 185 190
Gly Gln Asn Pro Thr Glu Ala Glu Leu Arg Val Met Ile Ile Glu Val
195 200 205
Asp Ala Asp Gly Asp Gly Thr Leu Asp Phe Pro Glu Phe Leu Ala Met
210 215 220
Met Ala Arg Lys Met Lys Tyr Arg Asp Thr Glu Glu Glu Ile Arg Glu
225 230 235 240
Ala Phe Gly Val Phe Asp Lys Asp Gly Asn Gly Tyr Ile Gly Ala Ala
245 250 255
Glu Leu Arg His Val Met Thr Asn Leu Gly Glu Lys Leu Thr Asp Glu
260 265 270
Glu Val Gly Glu Leu Ile Arg Glu Ala Asp Ile Asp Gly Asp Gly Gln
275 280 285
Val Asn Tyr Glu Glu Phe Val Gln Met Met Thr Ala Lys Gly Gly Gly
290 295 300
Gly Ser Arg Arg Lys Trp Asn Lys Ala Gly His Ala Val Arg Ala Ile
305 310 315 320
Gly Arg Leu Ser Ser Ile Tyr Phe Ala Asp Trp Cys Val Ser Lys Lys
325 330 335
Thr Cys Pro Asn Asp Lys Thr Ile Val Ser Thr Phe Lys Trp Ala Phe
340 345 350
Ile Thr Asp Asn Gly Lys Arg Tyr Arg Ser Thr Ala Arg Thr Thr Tyr
355 360 365
Thr Phe Ala Lys Pro Met Ala Ala Asn Tyr Leu Lys Asn Gln Pro Met
370 375 380
Tyr Val Phe Arg Lys Thr Glu Leu Lys His Ser Lys Thr Glu Leu Asn
385 390 395 400
Phe Lys Glu Trp Gln Lys Ala Phe Thr Asp Val Met Gly Met Asp Glu
405 410 415
Leu Tyr Lys
<210> 5
<211> 440
<212> PRT
<213> Artificial Sequence (Artificial Sequence)
<400> 5
Met Leu Gln Asn Glu Leu Ala Leu Lys Leu Ala Gly Leu Asp Ile Asn
1 5 10 15
Lys Thr Gly Gly Gly Ser His His His His His His Val Ser Lys Gly
20 25 30
Glu Glu Glu Asn Met Ala Ser Leu Pro Ala Thr His Glu Leu His Ile
35 40 45
Phe Gly Ser Ile Asn Gly Ile Asp Phe Asp Met Val Gly Gln Gly Thr
50 55 60
Gly Asn Pro Asn Asp Gly Tyr Glu Glu Leu Asn Leu Lys Ser Thr Met
65 70 75 80
Gly Asp Leu Gln Phe Ser Pro Trp Ile Leu Val Pro His Ile Gly Tyr
85 90 95
Gly Phe His Gln Tyr Leu Pro Tyr Pro Asp Gly Met Ser Pro Phe Gln
100 105 110
Ala Ala Met Val Asp Gly Ser Gly Tyr Gln Val His Arg Thr Met Gln
115 120 125
Phe Glu Asp Gly Ala Ser Leu Thr Val Asn Tyr Arg Tyr Thr Tyr Glu
130 135 140
Gly Ser His Ile Lys Gly Glu Ala Gln Val Glu Gly Thr Gly Phe Pro
145 150 155 160
Ala Asp Gly Pro Val Met Thr Asn Ser Leu Thr Ala Glu Ala His Asp
165 170 175
Asp Leu Thr Glu Glu Gln Ile Ala Glu Phe Lys Glu Glu Phe Ser Leu
180 185 190
Phe Asp Lys Asp Gly Asp Gly Thr Ile Thr Thr Lys Glu Leu Gly Thr
195 200 205
Val Phe Arg Ser Leu Gly Gln Asn Pro Thr Glu Ala Glu Leu Arg Val
210 215 220
Met Ile Ile Glu Val Asp Ala Asp Gly Asp Gly Thr Leu Asp Phe Pro
225 230 235 240
Glu Phe Leu Ala Met Met Ala Arg Lys Met Lys Tyr Arg Asp Thr Glu
245 250 255
Glu Glu Ile Arg Glu Ala Phe Gly Val Phe Asp Lys Asp Gly Asn Gly
260 265 270
Tyr Ile Gly Ala Ala Glu Leu Arg His Val Met Thr Asn Leu Gly Glu
275 280 285
Lys Leu Thr Asp Glu Glu Val Gly Glu Leu Ile Arg Glu Ala Asp Ile
290 295 300
Asp Gly Asp Gly Gln Val Asn Tyr Glu Glu Phe Val Gln Met Met Thr
305 310 315 320
Ala Lys Gly Gly Gly Gly Ser Arg Arg Lys Trp Asn Lys Ala Gly His
325 330 335
Ala Val Arg Ala Ile Gly Arg Leu Ser Ser Ile Tyr Phe Ala Asp Trp
340 345 350
Cys Val Ser Lys Lys Thr Cys Pro Asn Asp Lys Thr Ile Val Ser Thr
355 360 365
Phe Lys Trp Ala Phe Ile Thr Asp Asn Gly Lys Arg Tyr Arg Ser Thr
370 375 380
Ala Arg Thr Thr Tyr Thr Phe Ala Lys Pro Met Ala Ala Asn Tyr Leu
385 390 395 400
Lys Asn Gln Pro Met Tyr Val Phe Arg Lys Thr Glu Leu Lys His Ser
405 410 415
Lys Thr Glu Leu Asn Phe Lys Glu Trp Gln Lys Ala Phe Thr Asp Val
420 425 430
Met Gly Met Asp Glu Leu Tyr Lys
435 440
<210> 6
<211> 453
<212> PRT
<213> Artificial Sequence (Artificial Sequence)
<400> 6
Met Leu Gln Asn Glu Leu Ala Leu Lys Leu Ala Gly Leu Asp Ile Asn
1 5 10 15
Lys Thr Gly Gly Ile Thr Leu Gly Met Asp Glu Leu Tyr Lys Met His
20 25 30
His His His His His Val Ser Lys Gly Glu Glu Glu Asn Met Ala Ser
35 40 45
Leu Pro Ala Thr His Glu Leu His Ile Phe Gly Ser Ile Asn Gly Ile
50 55 60
Asp Phe Asp Met Val Gly Gln Gly Thr Gly Asn Pro Asn Asp Gly Tyr
65 70 75 80
Glu Glu Leu Asn Leu Lys Ser Thr Met Gly Asp Leu Gln Phe Ser Pro
85 90 95
Trp Ile Leu Val Pro His Ile Gly Tyr Gly Phe His Gln Tyr Leu Pro
100 105 110
Tyr Pro Asp Gly Met Ser Pro Phe Gln Ala Ala Met Val Asp Gly Ser
115 120 125
Gly Tyr Gln Val His Arg Thr Met Gln Phe Glu Asp Gly Ala Ser Leu
130 135 140
Thr Val Asn Tyr Arg Tyr Thr Tyr Glu Gly Ser His Ile Lys Gly Glu
145 150 155 160
Ala Gln Val Glu Gly Thr Gly Phe Pro Ala Asp Gly Pro Val Met Thr
165 170 175
Asn Ser Leu Thr Ala Glu Ala His Asp Gln Leu Thr Glu Glu Gln Ile
180 185 190
Ala Glu Phe Lys Glu Ala Phe Ser Leu Phe Asp Lys Asp Gly Asp Gly
195 200 205
Thr Ile Thr Thr Lys Glu Leu Gly Thr Val Met Arg Ser Leu Gly Gln
210 215 220
Asn Pro Thr Glu Ala Glu Leu Arg Val Met Ile Ile Glu Val Asp Ala
225 230 235 240
Asp Gly Asp Gly Thr Leu Asp Phe Pro Glu Phe Leu Ala Met Met Ala
245 250 255
Arg Lys Met Lys Tyr Arg Asp Thr Glu Glu Glu Ile Arg Glu Ala Phe
260 265 270
Gly Val Phe Asp Lys Asp Gly Asn Gly Tyr Ile Gly Ala Ala Glu Leu
275 280 285
Arg His Val Met Thr Asn Leu Gly Glu Lys Leu Thr Asp Glu Glu Val
290 295 300
Gly Glu Leu Ile Arg Glu Ala Asp Ile Asp Gly Asp Gly Gln Val Asn
305 310 315 320
Tyr Glu Glu Phe Val Gln Met Met Thr Ala Lys Gly Gly Ser Gly Gly
325 330 335
Gly Ser Ser Ser Arg Arg Lys Trp Asn Lys Ala Gly His Ala Val Arg
340 345 350
Ala Ile Gly Arg Leu Ser Ser Ile Tyr Phe Ala Asp Trp Cys Val Ser
355 360 365
Lys Lys Thr Cys Pro Asn Asp Lys Thr Ile Val Ser Thr Phe Lys Trp
370 375 380
Ala Phe Ile Thr Asp Asn Gly Lys Arg Tyr Arg Ser Thr Ala Arg Thr
385 390 395 400
Thr Tyr Thr Phe Ala Lys Pro Met Ala Ala Asn Tyr Leu Lys Asn Gln
405 410 415
Pro Met Tyr Val Phe Arg Lys Thr Glu Leu Lys His Ser Lys Thr Glu
420 425 430
Leu Asn Phe Lys Glu Trp Gln Lys Ala Phe Thr Asp Val Met Gly Met
435 440 445
Asp Glu Leu Tyr Lys
450
<210> 7
<211> 1350
<212> DNA
<213> Artificial Sequence (Artificial Sequence)
<400> 7
atgggttctc atcatcatca tcatcatggt atggctagca tgactggtgg acagcaaatg 60
ggtcgggatc tgtacgacga tgacgataag gatctcgcca ccatggtcga ctcatcacgt 120
cgtaagtgga ataagacagg tcacgcagtc agagctatag gtcggctgag ctcactcgag 180
aacgtctata tcaaggccga caagcagaag aacggcatca aggcgaactt caagatccgc 240
cacaacatcg aggacggcgg cgtgcagctc gcctaccact accagcagaa cacccccatc 300
ggcgacggcc ccgtgctgct gcccgacaac cactacctga gcgtgcagtc caaactttcg 360
aaagacccca acgagaagcg cgatcacatg gtcctgctgg agttcgtgac cgccgccggg 420
atcactctcg gcatggacga gctgtacaag ggcggtaccg gagggagcat ggtgagcaag 480
ggcgaggagc tgttcaccgg ggtggtgccc atcctggtcg agctggacgg cgacgtaaac 540
ggccacaagt tcagcgtgtc cggcgagggt gagggcgatg ccacctacgg caagctgacc 600
ctgaagttca tctgcaccac cggcaagctg cccgtgccct ggcccaccct cgtgaccacc 660
ctgacctacg gcgtgcagtg cttcagccgc taccccgacc acatgaagca gcacgacttc 720
ttcaagtccg ccatgcccga aggctacatc caggagcgca ccatcttctt caaggacgac 780
ggcaactaca agacccgcgc cgaggtgaag ttcgagggcg acaccctggt gaaccgcatc 840
gagctgaagg gcatcgactt caaggaggac ggcaacatcc tggggcacaa gctggagtac 900
aacctgccgg accaactgac tgaagagcag atcgcagaat ttaaagaggc tttctcccta 960
tttgacaagg acggggatgg gacaataaca accaaggagc tggggacggt gatgcggtct 1020
ctggggcaga accccacaga agcagagctg caggacatga tcaatgaagt agatgccgac 1080
ggtgacggca caatcgactt ccctgagttc ctgacaatga tggcaagaaa agggagctac 1140
agggacacgg aagaagaaat tagagaagcg ttcggtgtgt ttgataagga tggcaatggc 1200
tacatcagtg cagcagagct tcgccacgtg atgacaaacc ttggagagaa gttaacagat 1260
gaagaggttg atgaaatgat cagggaagca gacatcgatg gggatggtca ggtaaactac 1320
gaagagtttg tacaaatgat gacagcgaag 1350
<210> 8
<211> 1251
<212> DNA
<213> Artificial Sequence (Artificial Sequence)
<400> 8
atggtgagca agggcgagga ggagaacatg gccagcctgc ctgctacaca tgaactgcac 60
atttttggaa gcatcaacgg catcgacttc gacatggtgg gccagggcac tggaaatcct 120
aatgacggat acgaggagct gaatctgaag agcaccatgg gcgacctgca gttcagcccc 180
tggatactgg tgcctcatat tggctatggc ttccaccaat acctgcccta ccccgacgga 240
atgagcccct ttcaagctgc catggtggat ggcagcggat accaagtgca tagaaccatg 300
cagttcgagg acggcgccag ccttacagtg aattatagat atacctacga gggcagccac 360
atcaagggcg aggcacaagt ggaaggcaca ggatttcccg ctgatggccc cgtgatgacc 420
aatagcctga ccgctgaagc ccacgaccag ctgacagaag aacagatcgc cgaattcaag 480
gaggccttta gcctgttcga caaggacggc gacggcacca ttaccacaaa agagctgggc 540
acagtgatga gaagcctggg ccaaaatccc acagaagctg agctgagagt gatgatcatc 600
gaggtggacg ccgacggcga tggaacactg gattttcctg aatttctggc catgatggcc 660
agaaagatga agtacagaga caccgaggag gagatcagag aggccttcgg cgtgtttgac 720
aaggacggca atggatacat tggcgccgct gaactgagac acgtgatgac caatctgggc 780
gagaagctga ccgacgagga ggtgggagaa ctgatcagag aggctgacat tgacggcgac 840
ggccaggtga attatgagga gtttgtgcag atgatgaccg ccaagggcgg cagcggagga 900
ggaagcagca gcagaagaaa atggaataag gccggccacg ccgtgagagc cattggcaga 960
ctttctagca tgtacttcgc cgactggtgc gtgagcaaga agacctgccc taacgacaag 1020
accatcgtga gcaccttcaa gtgggccttc atcaccgaca acggcaagag atacagaagc 1080
accgccagaa ccacctacac cttcgccaaa cccatggccg ctaactacct gaagaaccag 1140
cccatgtacg tgttcagaaa gaccgagctg aagcacagca agaccgagct gaacttcaag 1200
gagtggcaga aggccttcac cgacgtgatg ggcatggacg agctgtacaa g 1251
<210> 9
<211> 1323
<212> DNA
<213> Artificial Sequence (Artificial Sequence)
<400> 9
atgctgcaga acgagcttgc tcttaagttg gctggacttg atattaacaa gactggagga 60
ggttctcatc atcatcatca tcatgtgagc aagggcgagg aggagaacat ggccagcctg 120
cctgctacac atgaactgca catttttgga agcatcaacg gcatcgactt cgacatggtg 180
ggccagggca ctggaaatcc taatgacgga tacgaggagc tgaatctgaa gagcaccatg 240
ggcgacctgc agttcagccc ctggatactg gtgcctcata ttggctatgg cttccaccaa 300
tacctgccct accccgacgg aatgagcccc tttcaagctg ccatggtgga tggcagcgga 360
taccaagtgc atagaaccat gcagttcgag gacggcgcca gccttacagt gaattataga 420
tatacctacg agggcagcca catcaagggc gaggcacaag tggaaggcac aggatttccc 480
gctgatggcc ccgtgatgac caatagcctg accgctgaag cccacgacca gctgacagaa 540
gaacagatcg ccgaattcaa ggaggccttt agcctgttcg acaaggacgg cgacggcacc 600
attaccacaa aagagctggg cacagtgatg agaagcctgg gccaaaatcc cacagaagct 660
gagctgagag tgatgatcat cgaggtggac gccgacggcg atggaacact ggattttcct 720
gaatttctgg ccatgatggc cagaaagatg aagtacagag acaccgagga ggagatcaga 780
gaggccttcg gcgtgtttga caaggacggc aatggataca ttggcgccgc tgaactgaga 840
cacgtgatga ccaatctggg cgagaagctg accgacgagg aggtgggaga actgatcaga 900
gaggctgaca ttgacggcga cggccaggtg aattatgagg agtttgtgca gatgatgacc 960
gccaagggcg gcagcggagg aagcagaaga aaatggaata aggccggcca cgccgtgaga 1020
gccattggca gactttctag catctacttc gccgactggt gcgtgagcaa gaagacctgc 1080
cctaacgaca agaccatcgt gagcaccttc aagtgggcct tcatcaccga caacggcaag 1140
agatacagaa gcaccgccag aaccacctac accttcgcca aacccatggc cgctaactac 1200
ctgaagaacc agcccatgta cgtgttcaga aagaccgagc tgaagcacag caagaccgag 1260
ctgaacttca aggagtggca gaaggccttc accgacgtga tgggcatgga cgagctgtac 1320
aag 1323
<210> 10
<211> 1257
<212> DNA
<213> Artificial Sequence (Artificial Sequence)
<400> 10
atgcatcatc atcatcatca tgtgagcaag ggcgaggagg agaacatggc cagcctgcct 60
gctacacatg aactgcacat ttttggaagc atcaacggca tcgacttcga catggtgggc 120
cagggcactg gaaatcctaa tgacggatac gaggagctga atctgaagag caccatgggc 180
gacctgcagt tcagcccctg gatactggtg cctcatattg gctatggctt ccaccaatac 240
ctgccctacc ccgacggaat gagccccttt caagctgcca tggtggatgg cagcggatac 300
caagtgcata gaaccatgca gttcgaggac ggcgccagcc ttacagtgaa ttatagatat 360
acctacgagg gcagccacat caagggcgag gcacaagtgg aaggcacagg atttcccgct 420
gatggccccg tgatgaccaa tagcctgacc gctgaagccc acgaccagct gacagaagaa 480
cagatcgccg aattcaagga ggcctttagc ctgttcgaca aggacggcga cggcaccatt 540
accacaaaag agctgggcac agtgatgaga agcctgggcc aaaatcccac agaagctgag 600
ctgagagtga tgatcatcga ggtggacgcc gacggcgatg gaacactgga ttttcctgaa 660
tttctggcca tgatggccag aaagatgaag tacagagaca ccgaggagga gatcagagag 720
gccttcggcg tgtttgacaa ggacggcaat ggatacattg gcgccgctga actgagacac 780
gtgatgacca atctgggcga gaagctgacc gacgaggagg tgggagaact gatcagagag 840
gctgacattg acggcgacgg ccaggtgaat tatgaggagt ttgtgcagat gatgaccgcc 900
aagggcggcg gaggcagcag aagaaaatgg aataaggccg gccacgccgt gagagccatt 960
ggcagacttt ctagcatcta cttcgccgac tggtgcgtga gcaagaagac ctgccctaac 1020
gacaagacca tcgtgagcac cttcaagtgg gccttcatca ccgacaacgg caagagatac 1080
agaagcaccg ccagaaccac ctacaccttc gccaaaccca tggccgctaa ctacctgaag 1140
aaccagccca tgtacgtgtt cagaaagacc gagctgaagc acagcaagac cgagctgaac 1200
ttcaaggagt ggcagaaggc cttcaccgac gtgatgggca tggacgagct gtacaag 1257
<210> 11
<211> 1320
<212> DNA
<213> Artificial Sequence (Artificial Sequence)
<400> 11
atgctgcaga acgagcttgc tcttaagttg gctggacttg atattaacaa gactggagga 60
ggttctcatc atcatcatca tcatgtgagc aagggcgagg aggagaacat ggccagcctg 120
cctgctacac atgaactgca catttttgga agcatcaacg gcatcgactt cgacatggtg 180
ggccagggca ctggaaatcc taatgacgga tacgaggagc tgaatctgaa gagcaccatg 240
ggcgacctgc agttcagccc ctggatactg gtgcctcata ttggctatgg cttccaccaa 300
tacctgccct accccgacgg aatgagcccc tttcaagctg ccatggtgga tggcagcgga 360
taccaagtgc atagaaccat gcagttcgag gacggcgcca gccttacagt gaattataga 420
tatacctacg agggcagcca catcaagggc gaggcacaag tggaaggcac aggatttccc 480
gctgatggcc ccgtgatgac caatagcctg accgctgaag cccacgacga tctgacagaa 540
gaacagatcg ccgaattcaa ggaggagttt agcctgttcg acaaggacgg cgacggcacc 600
attaccacaa aagagctggg cacagtgttc agaagcctgg gccaaaatcc cacagaagct 660
gagctgagag tgatgatcat cgaggtggac gccgacggcg atggaacact ggattttcct 720
gaatttctgg ccatgatggc cagaaagatg aagtacagag acaccgagga ggagatcaga 780
gaggccttcg gcgtgtttga caaggacggc aatggataca ttggcgccgc tgaactgaga 840
cacgtgatga ccaatctggg cgagaagctg accgacgagg aggtgggaga actgatcaga 900
gaggctgaca ttgacggcga cggccaggtg aattatgagg agtttgtgca gatgatgacc 960
gccaagggcg gcggaggcag cagaagaaaa tggaataagg ccggccacgc cgtgagagcc 1020
attggcagac tttctagcat ctacttcgcc gactggtgcg tgagcaagaa gacctgccct 1080
aacgacaaga ccatcgtgag caccttcaag tgggccttca tcaccgacaa cggcaagaga 1140
tacagaagca ccgccagaac cacctacacc ttcgccaaac ccatggccgc taactacctg 1200
aagaaccagc ccatgtacgt gttcagaaag accgagctga agcacagcaa gaccgagctg 1260
aacttcaagg agtggcagaa ggccttcacc gacgtgatgg gcatggacga gctgtacaag 1320
<210> 12
<211> 1359
<212> DNA
<213> Artificial Sequence (Artificial Sequence)
<400> 12
atgctgcaga acgagcttgc tcttaagttg gctggacttg atattaacaa gactggaggg 60
atcactctcg gcatggacga gctttacaag atgcatcatc atcatcatca tgtgagcaag 120
ggcgaggagg agaacatggc cagcctgcct gctacacatg aactgcacat ttttggaagc 180
atcaacggca tcgacttcga catggtgggc cagggcactg gaaatcctaa tgacggatac 240
gaggagctga atctgaagag caccatgggc gacctgcagt tcagcccctg gatactggtg 300
cctcatattg gctatggctt ccaccaatac ctgccctacc ccgacggaat gagccccttt 360
caagctgcca tggtggatgg cagcggatac caagtgcata gaaccatgca gttcgaggac 420
ggcgccagcc ttacagtgaa ttatagatat acctacgagg gcagccacat caagggcgag 480
gcacaagtgg aaggcacagg atttcccgct gatggccccg tgatgaccaa tagcctgacc 540
gctgaagccc acgaccagct gacagaagaa cagatcgccg aattcaagga ggcctttagc 600
ctgttcgaca aggacggcga cggcaccatt accacaaaag agctgggcac agtgatgaga 660
agcctgggcc aaaatcccac agaagctgag ctgagagtga tgatcatcga ggtggacgcc 720
gacggcgatg gaacactgga ttttcctgaa tttctggcca tgatggccag aaagatgaag 780
tacagagaca ccgaggagga gatcagagag gccttcggcg tgtttgacaa ggacggcaat 840
ggatacattg gcgccgctga actgagacac gtgatgacca atctgggcga gaagctgacc 900
gacgaggagg tgggagaact gatcagagag gctgacattg acggcgacgg ccaggtgaat 960
tatgaggagt ttgtgcagat gatgaccgcc aagggcggca gcggaggagg aagcagcagc 1020
agaagaaaat ggaataaggc cggccacgcc gtgagagcca ttggcagact ttctagcatc 1080
tacttcgccg actggtgcgt gagcaagaag acctgcccta acgacaagac catcgtgagc 1140
accttcaagt gggccttcat caccgacaac ggcaagagat acagaagcac cgccagaacc 1200
acctacacct tcgccaaacc catggccgct aactacctga agaaccagcc catgtacgtg 1260
ttcagaaaga ccgagctgaa gcacagcaag accgagctga acttcaagga gtggcagaag 1320
gccttcaccg acgtgatggg catggacgag ctgtacaag 1359
Claims (8)
1. A calcium indicator protein which is one or more of:
(1) NEMOm: the amino acid sequence is shown as SEQ ID NO. 3;
(2) NEMOc: the amino acid sequence is shown as SEQ ID NO. 4;
(3) NEMOf: the amino acid sequence is shown as SEQ ID NO. 5;
(4) NEMOs: the amino acid sequence is shown in SEQ ID NO. 6.
2. A product for detecting calcium signaling or screening for drugs targeting calcium channels, comprising the calcium indicator protein of claim 1.
3. The product of claim 2, wherein the product is a kit.
4. Use of the calcium indicator protein of claim 1 or the product of claim 2 or 3 for detecting calcium signals or screening for drugs targeting calcium channels.
5. A method of detecting a calcium signal, wherein the method comprises using the calcium indicator protein of claim 1 or the product of claim 2 or 3.
6. The method of claim 5, wherein the method is applied to detect calcium signals in living cells.
7. A method of screening for a drug targeting a calcium channel, wherein the method comprises using the calcium indicator protein of claim 1 or the product of claim 2 or 3.
8. A biomaterial, being:
(1) A nucleic acid molecule encoding the calcemic indicator protein of claim 1;
(2) A plasmid or cell comprising the nucleic acid molecule of (1).
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