CN114958700A - Escherichia coli engineering bacterium and application thereof - Google Patents

Escherichia coli engineering bacterium and application thereof Download PDF

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CN114958700A
CN114958700A CN202210510742.3A CN202210510742A CN114958700A CN 114958700 A CN114958700 A CN 114958700A CN 202210510742 A CN202210510742 A CN 202210510742A CN 114958700 A CN114958700 A CN 114958700A
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苏静
李岩
王瑞明
王丽
王蕾蕾
徐子淇
汪俊卿
刘孟连
宋子昂
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Qilu University of Technology
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Abstract

The invention relates to an escherichia coli engineering bacterium and application thereof, and particularly relates to an escherichia coli gene deletion bacterium BL21 delta FadB, R and J, wherein the escherichia coli gene deletion bacterium is obtained by knocking out a FadB gene, a FadR gene and a FadJ gene from escherichia coli BL21, and the escherichia coli gene deletion bacterium BL21 delta FadB, R and J are used as transformation host bacteria of a recombinant plasmid pCDFDuet-1-MaMACS-PpFadE and a recombinant plasmid pET28a-SUMO-ctYdii to catalyze capric acid to generate trans-2-decenoic acid, so that the specificity is realized.

Description

Escherichia coli engineering bacterium and application thereof
The application is divisional application with application number 202110211118.9, application date 2021.02.25 and invention name 'a mutant enzyme CYP153AM228L and application thereof in synthesizing 10-hydroxy-2-decenoic acid'.
Technical Field
The invention relates to an engineering bacterium of escherichia coli and application thereof, belonging to the technical field of biological fermentation.
Background
10-hydroxy-2-decenoic acid (10-hydroxy-2-decenoic acid, 10-HDA) is a monounsaturated fatty acid containing hydroxyl groups and has a molecular formula of C 10 H 18 O 3 . So far, it is only found in nature from royal jelly and propolis, so it is also called royal jelly acid. Research shows that the 10-HDA has multiple important physiological functions of resisting bacteria, regulating immunity, resisting oxidation, resisting tumors, reducing blood sugar and the like, has extremely high medical and health-care values and has very wide application prospect. The structure of the compound is as follows:
in view of the wide and important application value of 10-HDA, the research for finding a production method of 10-HDA with high efficiency, convenience and low cost is widely regarded. The existing 10-HDA obtaining method mainly comprises a physical extraction method and a chemical synthesis method. Wherein the physical extraction method is
Figure BDA0003637730690000011
The source is single, the content of 10-HDA in the royal jelly is only 1.4 to 2.4 percent, so the yield is low, and the market demand cannot be met. The chemical synthesis method can satisfy the industrial demand, but the operation steps are complicated, and the chemical reagents have certain toxicity. Therefore, the method for synthesizing the 10-HDA with high efficiency, convenience and low cost is explored, and has important theoretical and application values for large-scale development and utilization of the HDA. The production of 10-HDA by microbial fermentation synthesis has become a new goal of researchers and the industry in recent years.
Chinese patent document CN109897870A (application number: 201910088897.0) discloses a method for preparing 10-hydroxy-2-decenoic acid by using capric acid as a raw material and utilizing engineering bacteria of escherichia coli, and the patent document utilizes capric acid to generate 10-HDA in one step.
Disclosure of Invention
Aiming at the defects of the prior art, the invention provides an escherichia coli engineering bacterium and application thereof.
The present application utilizes a two-step method to generate 10-HDA, and the fatty acyl CoA dehydrogenase gene PpFadE, the fatty acyl CoA synthetase gene MaMACS and the acyl CoA thioesterase gene ctydiI utilized by the present application are not the same as the fatty acyl CoA dehydrogenase gene MCAD, the fatty acyl CoA synthetase gene FadK and the acyl CoA thioesterase gene ydiI in Chinese patent document CN109897870A (application number: 201910088897.0), and the alkane hydroxylase CYP153A in the present application changes the amino acid at the 228 position from M to L.
Aiming at the situation that the synthesis way constructed by the existing single engineering bacterium is extremely low in 10-HDA synthesis efficiency and can not reach the industrial level, the invention further optimizes an expression element and the 10-HDA synthesis way on the basis of earlier research, and provides a two-step method for producing and preparing 10-hydroxy-2-decenoic acid by using decanoic acid as a raw material and utilizing escherichia coli engineering bacteria.
The technical scheme of the invention is as follows:
an escherichia coli gene deletion strain BL21 delta FadB, R and J is obtained by knocking out a FadB gene, a FadR gene and a FadJ gene from escherichia coli BL 21.
The delta symbol is a gene knocked out from the genome of the large intestine, FadB is enoyl CoA hydratase, FadR is a protein operon, and FadJ is 3-hydroxyacyl coenzyme A dehydrogenase; the presence of these three enzymes is a hindrance to the two-step method of the present invention to catalyze the production of 10-HDA from capric acid, and therefore was knocked out.
Application of escherichia coli gene deletion bacteria BL21 delta FadB, R and J in preparation of 10-hydroxy-2-decenoic acid.
The construction method of the escherichia coli gene deletion bacterium BL21 delta FadB, R and J comprises the following steps:
knocking out genes by using an RED recombination method, and constructing a gene deletion delta FadRB strain (hereinafter referred to as delta FadR delta FadB strain); the construction method of the strain is disclosed in Chinese patent document CN 110684794A;
II, knocking out genes by using an RED recombination method, and constructing escherichia coli gene deletion bacterium BL21 delta FadB, R and J, wherein the construction specifically comprises a FadJ knock-out frame (the FadJ knock-out frame is abbreviated as Jk in the following); and (3) transforming the FadJ knockout frame into pkd 46-delta FadR delta FadB competent cells to prepare escherichia coli gene deletion bacteria BL21 delta FadB, R and J.
Preferably, the FadR knockout box is constructed in step II, and the method comprises the following steps:
taking a genome of escherichia coli BL21 as a template, amplifying an upstream homologous arm FadJ1 of the 3-hydroxyacyl-CoA dehydrogenase gene, wherein the nucleotide sequence of an upstream primer is shown as SEQ ID No.25, and the nucleotide sequence of a downstream primer is shown as SEQ ID No. 26; taking a genome of escherichia coli BL21 as a template, amplifying a downstream homology arm FadJ2 of a 3-hydroxyacyl-CoA dehydrogenase gene, wherein the nucleotide sequence of an upstream primer is shown as SEQ ID No.27, and the nucleotide sequence of a downstream primer is shown as SEQ ID No. 28; taking pkd3 plasmid as a template, amplifying an FRT-RKan-FRT gene fragment, wherein the nucleotide sequence of an upstream primer is shown as SEQ ID NO.29, and the nucleotide sequence of a downstream primer is shown as SEQ ID NO. 30; then, multi-fragment seamless cloning is carried out on FadJl, FRT-RKan-FRT and FadJ2 gene fragments, a knockout frame fragment of FadJ1-Kan-FadJ2 is amplified, the nucleotide sequence of an upstream primer is shown as SEQ ID No.31, the nucleotide sequence of a downstream primer is shown as SEQ ID No.32, and a FadJ knockout frame is obtained by recovering purified glue (the FadJ knockout frame is abbreviated as Jk hereinafter).
Further preferably, the PCR amplification system is as follows, and the total system is 50 μ L:
mu.L of 100 mu M upstream primer 2.0. mu.L, 100 mu.M downstream primer 2.0. mu.L, template 2.0. mu.L, 5U/. mu.L phanta enzyme 25. mu.L, ddH2O 19. mu.L;
the PCR amplification conditions were as follows:
pre-denaturation at 95 ℃ for 3 min; denaturation at 95 deg.C for 15s, annealing at 60 deg.C for 15s, extension at 72 deg.C for 1min for 15s, and circulating for 30 times; extension at 72 ℃ for 5 min.
Preferably, the FadJ knockout frame is transformed into pkd 46-delta FadR delta FadB recombinant bacteria in the step II to finally obtain
Escherichia coli gene deletion bacterium BL21 delta FadB, R and J, comprising the following steps:
a. transforming the plasmid pkd46 into a delta FadR delta FadB competent cell to obtain a pkd 46-delta FadR delta FadB recombinant strain, preparing a pkd 46-delta FadR delta FadB competent cell, and preserving the prepared pkd 46-delta FadR delta FadB competent cell by using glycerol with the mass concentration of 10%;
b. the FadJ knockout frame Jk is transformed into pkd 46-delta FadR delta FadB competent cells, after the confirmation of the knockout frame transfer of the pkd46-Jk-BL21 recombinant bacteria is verified, pkd46 is eliminated at 42 ℃, and the Jk-delta FadR delta FadB recombinant bacteria are obtained after screening;
c. preparing a competent transformation pcp20 plasmid from the Jk-delta FadR delta FadB recombinant strain, eliminating Jk resistance and the pcp20 plasmid at 42 ℃ to obtain a delta FadRBJ recombinant strain, namely escherichia coli gene deletion strain BL21 delta FadB, R and J.
A method for preparing 10-hydroxy-2-decenoic acid by using capric acid as a raw material and utilizing escherichia coli engineering bacteria resting cells comprises the following steps:
(1) construction of optimized recombinant plasmid pCDFDuet-1-MaMACS-PpFadE, optimized recombinant plasmid pET21b-CYP153A M228L-CPR BM3 The optimized recombinant plasmid pET28 a-SUMO-ctYdii;
the CYP153A-CPR BM3 The nucleotide sequence of the expression gene of the fusion enzyme is shown as SEQ ID NO. 13; CYP153AM228L-CPR BM3 The nucleotide sequence of the expression gene of the fusion enzyme is shown as SEQ ID NO. 14; the nucleotide sequence of the fatty acyl CoA synthetase gene MaMACS is shown as SEQ ID NO. 15; the nucleotide sequence of the fatty acyl CoA dehydrogenase gene PpFadE is shown as SEQ ID NO. 16; the nucleotide sequence of the ester acyl-CoA thioesterase gene ctYdii is shown in SEQ ID NO. 17;
the CYP153A M228L is characterized in that the 228 th amino acid of the CYP153A enzyme is mutated from M to L.
(2) Constructing escherichia coli BL21 delta FadB, R and J, pCDFDuet-1-MaMACS-PpFadE and pET28a-SUMO-ctYdii by using escherichia coli knockout strains transformed by the recombinant plasmids pCDFDuet-1-MaMACS-PpFadE and pET28a-SUMO-ctYdii prepared in the step (1), and carrying out the recombination of the recombinant plasmids pET21b-CYP153AM228L-CPR BM3 Transformed into Escherichia coli BL21 to construct Escherichia coli BL21pET21 b-CYP153AM228L-CPR BM3 Screening and inducing culturing the two engineering bacteria to obtain induced cells;
(3) culturing the induced cells prepared in the step (2) by a transformation culture medium to prepare resting cells, and then adding capric acid into the resting cells of escherichia coli BL21 delta FadB, R, J, pCDFDuet-1-MaMACS-PpFadE and pET28a-SUMO-ctYdii to culture to prepare trans-2-decenoic acid; adding Escherichia coli BL21pET21b-CYP153A M228L-CPR into the reaction solution BM3 The cell is rested and cultured to obtain the 10-hydroxy-2-decenoic acid.
Preferably, in the step (1), the recombinant plasmid pCDFDuet-1-MaMACS-PpFadE is constructed, which comprises the following steps:
taking a genome of escherichia coli DH5a as a template, amplifying a fatty acyl CoA synthetase gene MaMACS, wherein the nucleotide sequence of an upstream primer is shown as SEQ ID NO.7, the nucleotide sequence of a downstream primer is shown as SEQ ID NO.8, then carrying out double enzyme digestion on the pCDFDuet-1 plasmid by using BamH I and Hind III, and connecting by ligase to prepare a recombinant plasmid pCDFDuet-1-MaMACS;
the PCR amplification system was as follows, 25. mu.L total:
mu.M forward primer 1.0. mu.L, 100. mu.M reverse primer 1.0. mu.LL, template 1.0. mu.L, 5U/. mu.L phanta enzyme 12.5. mu.L, ddH 2 O 9.5μL;
The PCR amplification conditions were as follows:
pre-denaturation at 95 ℃ for 3 min; denaturation at 95 ℃ for 15s, annealing at 60 ℃ for 15s, extension at 72 ℃ for 50s, and circulation for 30 times; extension at 72 ℃ for 5 min.
Using Escherichia coli DH5a genome as a template, amplifying fatty acyl CoA dehydrogenase gene PpFadE, wherein the nucleotide sequence of an upstream primer is shown as SEQ ID NO.9, the nucleotide sequence of a downstream primer is shown as SEQ ID NO.10, then carrying out double enzyme digestion on pCDFDuet-1-MaMACS plasmid by Nde I and Ava I, and connecting by ligase to prepare a recombinant plasmid pCDFDuet-1-MaMACS-PpFadE;
the PCR amplification system was as follows, 25. mu.L total:
mu.L 100. mu.M forward primer 1.0. mu.L, mu.L 100. mu.M reverse primer 1.0. mu.L, template 1.0. mu.L, 5U/. mu.L phanta enzyme 12.5. mu.L, ddH 2 O 9.5μL;
The PCR amplification conditions were as follows:
pre-denaturation at 95 ℃ for 3 min; denaturation at 95 ℃ for 15S, annealing at 60 ℃ for 15S, extension at 72 ℃ for 40S, and circulation for 30 times; extension at 72 ℃ for 5 min.
Preferably, in the step (1), the recombinant plasmid pET28a-SUMO-ctYdii is constructed, and the method comprises the following steps:
using a genome of escherichia coli DH5a as a template, amplifying an ester acyl-CoA thioesterase gene ctyydiI, wherein the nucleotide sequence of an upstream primer is shown as SEQ ID No.11, the nucleotide sequence of a downstream primer is shown as SEQ ID No.12, then performing double enzyme digestion on pET28a-SUMO plasmid and the ester acyl-CoA thioesterase gene ctyydiI respectively by BamHI and Xho I, and connecting by ligase to prepare a recombinant plasmid pET28 a-SUMO-ctYdii;
the PCR amplification system was as follows, 25. mu.L total:
mu.L 100. mu.M forward primer 1.0. mu.L, mu.L 100. mu.M reverse primer 1.0. mu.L, template 1.0. mu.L, 5U/. mu.L phanta enzyme 12.5. mu.L, ddH 2 O 9.5μL。
The PCR amplification conditions were as follows:
pre-denaturation at 95 ℃ for 3 min; denaturation at 95 ℃ for 15s, annealing at 60 ℃ for 15s, extension at 72 ℃ for 15s, and circulation for 30 times; extension at 72 ℃ for 5 min.
Preferably, in the step (2), the transformed engineered Escherichia coli is inoculated into LB liquid medium containing 50. mu.g/mL kanamycin, 100. mu.g/mL ampicillin and 40. mu.g/mL streptomycin at corresponding concentrations, and is subjected to shaking screening culture at 35-40 ℃ until bacterial liquid OD 600 0.8 to 1.2.
Preferably, in the step (2), after the bacteria solution after the screening culture is cooled to 18-20 ℃ and adapted for 0.5-1 hour, IPTG is added to the concentration of 0.5-0.8 mM, oleic acid is added to the concentration of 0.4-0.8% by mass, tween 80 is added to the concentration of 0.2-0.5% by mass, and the induction culture is continued for 18-20 hours, and the cells are separated to prepare the induced cells.
Preferably, in the step (2), the inducing culture conditions include cooling the bacteria solution to 20 ℃ for adaptation for 1 hour, adding IPTG to make the concentration of IPTG in the culture medium 0.5mM, adding oleic acid to make the concentration of tween 80 in the culture medium 0.6% and adding tween 80 to make the concentration of tween 80 in the culture medium 0.3%, continuing inducing culture for 18 hours, and separating cells to obtain the induced cells.
Further preferably, in the step (2), the induction culture conditions are that after the bacterial liquid of the screening culture is cooled to 20 ℃ and adapted for 1 hour, FeCl with the final concentration of 0.5mM is added 3 And 5-ALA with the final concentration of 0.5mM is continuously induced and cultured for 18 hours, and the cells are separated to prepare the induced cells.
Further preferably, in the step (2), the cells are separated by centrifuging at 5000rpm for 15min, collecting the precipitate, and then washing with 0.85% by mass of saline.
Preferably, the transformation medium in step (3) comprises the following components:
0.8-1.2% of glycerol by mass fraction, 0.3-0.5% of glucose by mass fraction, 40-60 mu g/mL of kanamycin antibiotic, 90-110 mu g/mL of ampicillin, 30-50 mu g/mL of streptomycin antibiotic and the balance of 100mM potassium phosphate buffer solution with pH7.4 as a solvent.
Further preferably, glycerol is 1% by mass, glucose is 0.4% by mass, kanamycin antibiotic is 50. mu.g/mL, ampicillin is 100. mu.g/mL, streptomycin antibiotic is 40. mu.g/mL, and the balance is 100mM potassium phosphate buffer pH 7.4.
Preferably, capric acid is added into the resting cells in the step (3) to the concentration of 0.3-0.7g/L, and the reaction is carried out for 7-10h at the temperature of 28-37 ℃ to prepare trans-2-decenoic acid; adding Escherichia coli BL21pET21 b-CYP153AM228L-CPR into the reaction solution BM3 Resting the cells, reacting for 10-24h at 28-37 ℃ to obtain the 10-hydroxy-2-decenoic acid.
Further preferably, in the step (3), the concentration of converted decanoic acid is 0.5 g/L.
More preferably, capric acid is added into the resting cells in the step (3) to the concentration of 0.5g/L, and the reaction is carried out for 9h at the temperature of 30 ℃ to prepare trans-2-decenoic acid; adding Escherichia coli BL21pET21b-CYP153A M228L-CPR into the reaction solution BM3 Resting the cells, reacting for 20h at the temperature of 30 ℃ to obtain the 10-hydroxy-2-decenoic acid.
According to the invention, in the step (3), the transformation culture condition is culture at 29-31 ℃ for 8 hours.
Preferably, according to the present invention, in the step (3), the decanoic acid is dissolved in the dimethyl sulfoxide.
Advantageous effects
1. The invention constructs recombinant plasmid pCDFDuet-1-MaMACS-PpFadE and recombinant plasmid pET21b-CYP153AM228L-CPR BM3 The recombinant plasmid pET28a-SUMO-ctYdii realizes the high-efficiency expression of a 10-hydroxy-2-decenoic acid expression element, and after special induction treatment, trans-2-decenoic acid is produced by fermenting decanoic acid serving as a raw material by using engineering bacteria escherichia coli BL21 delta FadB, R, J, pCDFDuet-1-MaMACS-PpFadE and pET28a-SUMO-ctYdii resting cells, and then engineering bacteria escherichia coli BL21pET21b-CYP153A M228L-CPR BM3 The resting cells continue to react to finally obtain the 10-hydroxy-2-decenoic acid produced by fermenting the decanoic acid serving as the raw material, so that 0.5g/L decanoic acid is fermented in a shake flask to produce 0.273 g/L10-hydroxy-2-decenoic acid in the process of producing the high value-added 10-hydroxy-2-decenoic acid by using the low-value decanoic acid through a two-step method, and the conversion rate is54.6%。
2. The invention obviously improves the conversion rate of the 10-hydroxy-2-decenoic acid by optimizing the expression way of the 10-hydroxy-2-decenoic acid, optimizing each expression element in the way and relevant conditions in the conversion process, thereby enabling the industrial production of the 10-hydroxy-2-decenoic acid to be possible.
Drawings
FIG. 1 is a schematic diagram of a recombinant plasmid structure;
in the figure: a is recombinant plasmid pET21b-CYP153A M228L-CPR BM3 B is recombinant plasmid pCDFDuet-1-MaMACS-PpFadE, and C is recombinant plasmid pET28 a-SUMO-ctYdii.
FIG. 2 shows PCR amplification of CYP153A and CPR BM3 Agarose gel electrophoresis of the gene product;
in the figure, M is marker, the first row is CYP153A gene, the second row is CPR BM3 A gene.
FIG. 3 shows PCR amplified recombinant plasmid pET21b-CYP153A M228L-CPR BM3 Agarose gel electrophoresis of the target gene band of (1);
in the figure, M is marker, and 1-4 in the figure are all recombinant plasmids pET21b-CYP153A M228L-CPR BM3 A linearized band.
FIG. 4 is an agarose gel electrophoresis picture of a CTYdii product amplified by PCR;
in the figure, M is marker, and 1-5 are bands of the ctydiI gene.
FIG. 5 shows a plasmid map of Nde I, Xho I double digestion plasmid pET21 b;
in the figure, lane M is Marker; lanes 1-6 show the cleavage results.
FIG. 6 is the gel electrophoresis diagram of pET28a-SUMO, ctYdii double-enzyme digestion lipid sugar;
the first glue picture is pET28a-SUMO double enzyme cutting gene sequence, and 1-3 in the picture are strips obtained by pET28a-SUMO double enzyme cutting; the second gel diagram is a gene band of the ctydi double enzyme digestion, and 1-3 in the diagram are bands obtained after the ctydi double enzyme digestion.
FIG. 7 is a SDS-PAGE protein gel map;
the first glue is BL21 delta FadB, R and J, and the expression conditions of pCDFDuet-1-MaMACS-PpFadE and pET28a-SUMO-ctYdii proteins are shown, wherein MaMACS is 59KD, PpFadE is 45KD and ctYdii is 27 KD; the second piece of glue is the protein expression condition of escherichia coli BL21pET21b-CYP153A M228L-CPRBM3, and the CYP153A M228L-CPRBM3 protein is 117 KD.
FIG. 8 is a chromatogram of 10-hydroxy-2-decenoic acid produced by decanoic acid;
in the figure, the retention time 8.395min is phosphoric acid trimethylsilanol, the retention time 10.426min is trans-2-decenoic acid TMS derivative, the retention time 11.564min is lauric acid TMS derivative, the retention time 12.744min is 10-hydroxydecanoic acid TMS derivative, the retention time 13.092min is 10-hydroxy-2 decenoic acid TMS derivative, the retention time 14.292min is palmitic acid TMS derivative, the retention time 15.564min is (Z) -oleic acid TMS derivative, and the TMS is trimethylsilane.
FIG. 9 is a mass spectrum of intermediate trans-2-decenoic acid.
FIG. 10 is the mass spectrum of the final product 10-hydroxy-2-decenoic acid.
FIG. 11 is an agarose gel electrophoresis image of a colony PCR validated Δ FadR Δ FadB knockout FadJ product;
in the figure, lane M is Marker; lanes 1-2 are the FadJ gene bands, and lanes 3-8 are the FadJ knockout frame fusion fragment gene bands.
Detailed Description
The present invention will be further illustrated with reference to the following examples, but the scope of the present invention is not limited thereto. The procedures not described in detail in the examples are all conventional procedures known to those skilled in the art.
The reagents and medicines used in the invention are all common commercial products.
Example 1
Fusion enzyme gene of alkane hydroxylase CYP153A of sea Bacillus (Marinobacter aquaeolei) and Bacillus megaterium P450NADH reductase, i.e. CYP153A-CPR BM3 Fusion enzyme gene, CYP153AM228L-CPR BM3 PCR amplification of fusion enzyme gene, fatty acyl CoA dehydrogenase gene PpFadE, fatty acyl CoA synthetase gene MaMACS, ester acyl CoA thioesterase gene ctydiI.
Alkane hydroxylase CYP153A and Bacillus megaterium (Marinobacter aquaeolei)Bacillus megaterium) P450NADH reductase fusion gene, i.e., CYP153A gene, CPR BM3 Gene, CYP153AM228L-CPR BM3 Designing PCR amplification primers for a fusion enzyme gene, a fatty acyl CoA dehydrogenase gene PpFadE, a fatty acyl CoA synthetase gene MaMACS and a fatty acyl CoA thioesterase gene ctyydiI, wherein the nucleotide sequences of an upstream primer are respectively shown as SEQ ID No.1, 3, 5, 7, 9 and 11, and the nucleotide sequence of a downstream primer is shown as SEQ ID No.2, 4, 6, 8, 10 and 12;
wherein, the nucleotide sequences of the alkane hydroxylase CYP153A of the sea Bacillus (Marinobacter aquaeolei) and the fusion enzyme gene of the Bacillus megaterium P450NADH reductase, namely CYP153A-CPRBM3, CYP153AM228L-CPRBM3 fusion enzyme gene, fatty acyl CoA dehydrogenase gene PpFadE, fatty acyl CoA synthetase gene PpFadE and ester acyl CoA thioesterase gene ctYdii are respectively shown as SEQ ID NO.13, 14, 15, 16 and 17, the correspondingly expressed amino acid sequences are shown as SEQ ID NO.18, 19, 20, 21 and 22, the nucleotide sequence of CYP153A M228L is shown as SEQ ID NO.23, and the amino acid sequence of CYP153A M228L is shown as SEQ ID NO. 24.
The recombinant plasmid pET21b-CYP153A-CPR is constructed BM3 The method comprises the following steps:
performing PCR amplification by using a fusion enzyme gene of alkane hydroxylase CYP153A of mycobacterium marinum (Marinobacter aquaeolei) and Bacillus megaterium (Bacillus megaterium) P450NADH reductase as a template, wherein the nucleotide sequence of an upstream primer of CYP153A is shown as SEQ ID No.1, the nucleotide sequence of a downstream primer is shown as SEQ ID No.2, and CPR (CPR) is performed by using a fusion enzyme gene of alkane hydroxylase CYP153A and Bacillus megaterium) P450NADH reductase of the mycobacterium marinum optimized by codon as a template BM3 The nucleotide sequence of the upstream primer is shown as SEQ ID NO.3, the nucleotide sequence of the downstream primer is shown as SEQ ID NO.4, then the pET21b plasmid is subjected to double enzyme digestion by Nde I and Xho I, and is connected by a multi-fragment seamless cloning kit to prepare the recombinant plasmid pET21b-CYP153A-CPR BM3
The PCR amplification system was as follows, 25. mu.L total:
mu.L 100. mu.M forward primer 1.0. mu.L, mu.L 100. mu.M reverse primer 1.0. mu.L, template 1.0. mu.L, 5U/. mu.L phanta enzyme (a high fidelity enzyme) 12.5. mu.L, ddH 2 O 9.5μL;
The PCR amplification conditions were as follows:
pre-denaturation at 95 ℃ for 3 min; denaturation at 95 ℃ for 15s, annealing at 60 ℃ for 15s, and elongation at 72 ℃ for CYP153A 45s, CPR BM3 55s, circulating for 30 times; extension at 72 ℃ for 5 min.
And (3) recovering a PCR product:
after the PCR amplification, the length of the fragment was analyzed by 1% agarose gel electrophoresis, and the result is shown in FIG. 2, where the target band was cut out according to the size of the fragment, and the PCR product was recovered using a DNA gel recovery kit from Shanghai Bioengineering Ltd.
The recombinant plasmid pET21b-CYP153A M228L-CPR is constructed BM3 The method comprises the following steps:
the constructed pET21b-CYP153A-CPR BM3 Performing PCR amplification by using the fusion enzyme gene as a template, and performing CYP153AM228L-CPR BM3 The nucleotide sequence of the upstream primer is shown as SEQ ID NO.5, and the nucleotide sequence of the downstream primer is shown as SEQ ID NO. 6; then, after removing the original template by using Dpn I enzyme, transforming the template into a competent cell Escherichia coli BL21 to cyclize the competent cell Escherichia coli BL21 to obtain a recombinant plasmid pET21b-CYP153A M228L-CPR BM3
The PCR amplification system was as follows, 25. mu.L total:
mu.L 100. mu.M forward primer 1.0. mu.L, mu.L 100. mu.M reverse primer 1.0. mu.L, template 1.0. mu.L, 5U/. mu.L phanta enzyme (a high fidelity enzyme) 12.5. mu.L, ddH 2 O 9.5μL;
The PCR amplification conditions were as follows:
pre-denaturation at 95 ℃ for 3 min; denaturation at 95 ℃ for 15s, annealing at 60 ℃ for 15s, extension at 72 ℃ for 100s, and circulation for 30 times; extension at 72 ℃ for 5 min.
And (3) recovering a PCR product:
after completion of PCR amplification, the length of the fragment was analyzed by 1% agarose gel electrophoresis, and as a result, pET21b-CYP153A M228L-CPR was obtained as shown in FIG. 3 BM3 The plasmid of (1) is shown in FIG. 1A, and the PCR product is recovered by using a DNA gel recovery kit of Shanghai Bioengineering Co., Ltd, according to the size of the fragment cut out the band.
DpnI enzyme digestion template
DpnI digestion system:
PCR product 44. mu.L
DpnI 1μL
10X QuickCut Buffer 5μL
Reaction conditions are as follows: react for 2h at 37 ℃.
DpnI was inactivated at 70 ℃ for 15min after the reaction was complete.
The construction of recombinant plasmid pCDFDuet-1-MaMACS, comprising the steps of:
taking a genome of escherichia coli DH5a as a template, amplifying a fatty acyl CoA synthetase gene MaMACS, wherein the nucleotide sequence of an upstream primer is shown as SEQ ID NO.7, the nucleotide sequence of a downstream primer is shown as SEQ ID NO.8, then carrying out double enzyme digestion on pCDFDuet-1 plasmid by Hind III and BamH I, and connecting by ligase to prepare a recombinant plasmid pCDFDuet-1-MaMACS;
the PCR amplification system was as follows, 25. mu.L total:
mu.L 100. mu.M forward primer 1.0. mu.L, mu.L 100. mu.M reverse primer 1.0. mu.L, template 1.0. mu.L, 5U/. mu.L phanta enzyme (a high fidelity enzyme) 12.5. mu.L, ddH 2 O 9.5μL;
The PCR amplification conditions were as follows:
pre-denaturation at 95 ℃ for 3 min; denaturation at 95 ℃ for 15s, annealing at 60 ℃ for 15s, extension at 72 ℃ for 50s, and circulation for 30 times; extension at 72 ℃ for 5 min.
And (3) recovering a PCR product:
after the PCR amplification is finished, the length of the fragment is analyzed through 1% agarose gel electrophoresis, a target band is cut according to the size of the fragment, and a PCR product is recovered by using a DNA gel recovery kit of Shanghai biological engineering Co.
The construction of recombinant plasmid pCDFDuet-1-MaMACS-PpFadE includes the following steps:
using Escherichia coli DH5a genome as a template, amplifying fatty acyl CoA dehydrogenase gene PpFadE, wherein the nucleotide sequence of an upstream primer is shown as SEQ ID NO.9, the nucleotide sequence of a downstream primer is shown as SEQ ID NO.10, then carrying out double enzyme digestion on pCDFDuet-1-MaMACS plasmid by Nde I and Ava I, and connecting by ligase to prepare a recombinant plasmid pCDFDuet-1-MaMACS-PpFadE;
the PCR amplification system was as follows, 25. mu.L total:
mu.L 100. mu.M forward primer 1.0. mu.L, mu.L 100. mu.M reverse primer 1.0. mu.L, template 1.0. mu.L, 5U/. mu.L phanta enzyme 12.5. mu.L, ddH 2 O 9.5μL;
The PCR amplification conditions were as follows:
pre-denaturation at 95 ℃ for 3 min; denaturation at 95 ℃ for 15s, annealing at 60 ℃ for 15s, extension at 72 ℃ for 40s, and circulation for 30 times; extension at 72 ℃ for 5 min.
And (3) recovering a PCR product:
after the PCR amplification is finished, the length of the fragment is analyzed through 1% agarose gel electrophoresis, a target band is cut according to the size of the fragment, and a PCR product is recovered by using a DNA gel recovery kit of Shanghai biological engineering Co.
The construction of the recombinant plasmid pET28a-SUMO-ctYdii comprises the following steps:
amplifying an ester acyl-CoA thioesterase gene ctydiI, wherein the nucleotide sequence of an upstream primer is shown as SEQ ID No.11, the nucleotide sequence of a downstream primer is shown as SEQ ID No.12, then carrying out double enzyme digestion on pET28a-SUMO plasmid and the ester acyl-CoA thioesterase gene ctydiI respectively by using BamH I and Xho I, and carrying out ligase ligation to prepare a recombinant plasmid pET28 a-SUMO-ctYdii;
the PCR amplification system was as follows, 25. mu.L total:
mu.L 100. mu.M forward primer 1.0. mu.L, mu.L 100. mu.M reverse primer 1.0. mu.L, template 1.0. mu.L, 5U/. mu.L phanta enzyme 12.5. mu.L, ddH 2 O 9.5μL;
The PCR amplification conditions were as follows:
pre-denaturation at 95 ℃ for 3 min; denaturation at 95 ℃ for 15s, annealing at 60 ℃ for 15s, extension at 72 ℃ for 15s, and circulation for 30 times; extension at 72 ℃ for 5 min.
And (3) recovering a PCR product:
after the PCR amplification, the length of the fragment was analyzed by 1% agarose gel electrophoresis, and the result is shown in FIG. 4, where the target band was cut out according to the size of the fragment, and the PCR product was recovered using a DNA gel recovery kit from Shanghai Bioengineering Ltd.
Example 2
Digestion of recombinant plasmid vectors pET21b, pCDFDuet-1-MaMACS, pET28a-SUMO and gene ctYdii
Extracting pET21b plasmid and carrying out double enzyme digestion reaction, wherein the reaction system is as follows:
Figure BDA0003637730690000071
Figure BDA0003637730690000081
reaction conditions are as follows: react for 6h at 37 ℃.
The pET21b plasmid vector was purified from FIG. 5 by 1% agarose gel electrophoresis after double digestion, and the desired fragment was recovered using a DNA gel recovery kit.
The pCDFDuet-1 plasmid is extracted and subjected to double digestion reaction, and the reaction system is as follows:
Figure BDA0003637730690000082
the reaction conditions are as follows: react for 6h at 37 ℃.
The pCDFDuet-1 plasmid vector was purified by 1% agarose gel electrophoresis after double digestion and the target fragment was recovered using a DNA gel recovery kit.
Extracting pCDFDuet-1-MaMACS plasmid and carrying out double enzyme digestion reaction on the plasmid, wherein the reaction system is as follows:
Figure BDA0003637730690000083
reaction conditions are as follows: react for 6h at 37 ℃.
The pCDFDuet-1-MaMACS plasmid vector was purified by 1% agarose gel electrophoresis after double digestion and the target fragment was recovered using a DNA gel recovery kit.
Extracting pET28a-SUMO plasmid and ester acyl CoA thioesterase ctYdii PCR product to carry out double enzyme digestion reaction, wherein the reaction system is as follows:
Figure BDA0003637730690000084
reaction conditions are as follows: react for 6h at 37 ℃.
The pET28a-SUMO plasmid and the ester acyl CoA thioesterase ctYdii PCR product are subjected to double digestion, then the product is subjected to 1% agarose gel electrophoresis to purify the figure 6, and a DNA gel recovery kit is used for recovering the target fragment.
Example 3
Recombinant plasmid pET21b-CYP153A-CPR BM3 Multi-fragment seamless cloning and recombinant plasmid pET28a-SUMO-ctYdii connection
The plasmid pET21b which is subjected to double enzyme digestion is mixed with CYP153A and CPR BM3 And connecting PCR products, wherein a connection reaction system is as follows:
Figure BDA0003637730690000085
the ligation reaction system is fully and uniformly mixed and then centrifuged for a plurality of seconds, the liquid drops on the tube wall are collected at the tube bottom, and the tube bottom is connected for 30min at 37 ℃ to obtain the recombinant plasmid pET21b-CYP153A-CPR BM3
The digested pCDFDuet-1 plasmid is connected with the MaMACS PCR product, and the connection reaction system is as follows:
Figure BDA0003637730690000091
and (3) fully and uniformly mixing the ligation reaction system, centrifuging for several seconds, dripping the tube wall liquid to the tube bottom, and reacting for 37min at 37 ℃ to obtain the recombinant plasmid pCDFDuet-1-MaMACS.
The digested pCDFDuet-1-MaMACS plasmid was ligated to PpFadE PCR product in the following reaction:
Figure BDA0003637730690000092
the ligation reaction system is fully and evenly mixed and then centrifuged for a plurality of seconds, the tube wall is dripped to the tube bottom, and the reaction is carried out for 37min at 37 ℃, thus obtaining the recombinant plasmid pCDFDuet-1-MaMACS-PpFadE shown in figure 1B.
The double digested pET28a-SUMO plasmid was ligated to the ctYdii PCR product in the following reaction system:
Figure BDA0003637730690000093
and (3) fully and uniformly mixing the ligation reaction system, centrifuging for several seconds, dripping the tube wall liquid to the tube bottom, and ligating at 22 ℃ for 2 hours to obtain a recombinant plasmid pET28a-SUMO-ctYdii shown in a figure C of fig. 1.
Example 4
Recombinant plasmid pET21b-CYP153A-CPR BM3 The recombinant plasmid pET21b-CYP153A M228L-CPR BM3 And the transformation of the recombinant plasmid pCDFDuet-1-MaMACS-PpFadE and the recombinant plasmid pET28 a-SUMO-ctYdii:
(1) preparation of competent cells
Picking single colony (or picking and storing strain) of escherichia coli BL21(DE3) to inoculate into 10ml of liquid LB culture medium, and culturing overnight at 37 ℃ and 210 rpm;
② inoculating 5ml of bacterial liquid into 500ml of LB culture medium, culturing at 37 ℃ and 210rpm until the bacterial liquid OD 600 About 0.375;
thirdly, placing the bacterial liquid on the ice-water mixture for 10min, and precooling a 50ml centrifuge tube at the same time;
transferring the bacterial liquid into a centrifuge tube, centrifuging at 4 ℃ and 3700rpm for 10min, and collecting thalli;
fifthly, adding 10mL of precooled 0.1M CaCl into each centrifuge tube 2 Resuspending the cells in the solution, and adding 30mL of precooled 0.1M CaCl 2 The solution is reversed and mixed evenly, and is kept stand for 20min on ice;
sixthly, centrifuging at 4 ℃ and 3700rpm for 10min, and collecting thalli, wherein the volume ratio of the thalli to the bacterial liquid in the step (iv) is 3: 125 with a pre-cooled 0.1M CaCl containing 15% glycerol 2 Suspending the thallus in solution to obtain competent cell;
seventhly, subpackaging the competent cells and freezing and storing at the temperature of minus 80 ℃.
Competent cells of E.coli gene-deficient strain BL21(Δ FadB, R, J) were prepared in the same manner.
The construction method of the escherichia coli gene deletion bacterium BL21 delta FadB, R and J comprises the following steps:
knocking out genes by using an RED recombination method, and constructing a gene deletion delta FadRB strain, which is called as delta FadR delta FadB strain below; the construction method of the strain is disclosed in Chinese patent document CN110684794A (application No. 201911038194.3).
II, constructing a FadJ knockout frame, and specifically comprising the following steps:
taking a genome of escherichia coli BL21 as a template, amplifying an upstream homologous arm FadJ1 of the 3-hydroxyacyl-CoA dehydrogenase gene, wherein the nucleotide sequence of an upstream primer is shown as SEQ ID No.25, and the nucleotide sequence of a downstream primer is shown as SEQ ID No. 26; taking a genome of escherichia coli BL21 as a template, amplifying a downstream homologous arm FadJ2 of the 3-hydroxyacyl-CoA dehydrogenase gene, wherein the nucleotide sequence of an upstream primer is shown as SEQ ID No.27, and the nucleotide sequence of a downstream primer is shown as SEQ ID No. 28; amplifying an FRT-RKan-FRT gene fragment by taking pkd3 plasmid as a template, wherein the nucleotide sequence of an upstream primer is shown as SEQ ID NO.29, and the nucleotide sequence of a downstream primer is shown as SEQ ID NO. 30; then, carrying out multi-fragment seamless cloning on FadJl, FRT-RKan-FRT and FadJ2 gene fragments, amplifying a knockout frame fragment of FadJ1-Kan-FadJ2, wherein the nucleotide sequence of an upstream primer is shown as SEQ ID No.31, the nucleotide sequence of a downstream primer is shown as SEQ ID No.32, and recovering purified glue to obtain a FadJ knockout frame (the FadJ knockout frame is abbreviated as Jk in the following);
the PCR amplification system was as follows, with a total of 50. mu.L:
mu.L of 100 mu M upstream primer 2.0. mu.L, 100 mu.M downstream primer 2.0. mu.L, template 2.0. mu.L, 5U/. mu.L phanta enzyme 25. mu.L, ddH2O 19. mu.L;
the PCR amplification conditions were as follows:
pre-denaturation at 95 ℃ for 3 min; denaturation at 95 deg.C for 15s, annealing at 60 deg.C for 15s, extension at 72 deg.C for 1min for 15s, and circulating for 30 times; extension at 72 ℃ for 5 min.
III, transforming the FadJ knockout frame prepared in the step II into pkd 46-delta FadR delta FadB recombinant bacteria to finally obtain escherichia coli gene deletion bacteria BL21 delta FadB, R and J, and the specific steps are as follows:
a. transforming the plasmid pkd46 into a delta FadR delta FadB competent cell to obtain a pkd 46-delta FadR delta FadB recombinant strain, preparing a pkd 46-delta FadR delta FadB competent cell, and preserving the prepared pkd 46-delta FadR delta FadB competent cell by using glycerol with the mass concentration of 10%;
b. the FadJ knockout frame Jk is transformed into pkd 46-delta FadR delta FadB competent cells, after the confirmation of the knockout frame transfer of the pkd46-Jk-BL21 recombinant bacteria is verified, pkd46 is eliminated at 42 ℃, and the Jk-delta FadR delta FadB recombinant bacteria are obtained after screening;
c. preparing the Jk-delta FadR delta FadB recombinant bacteria into competent transformation pcp20 plasmid, eliminating Jk resistance and pcp20 plasmid at 42 ℃ to obtain delta FadRBJ recombinant bacteria, namely escherichia coli gene deletion bacteria BL21 delta FadB, R and J.
FIG. 11 is an agarose gel electrophoresis of a colony PCR validated Δ FadR Δ FadB knockdown FadJ product;
in the figure, lane M is Marker; lanes 1-2 are the FadJ gene bands, and lanes 3-8 are the FadJ knockout frame fusion fragment gene bands.
(2) Transformation of recombinant plasmids
10 microliter of recombinant plasmid pET21b-CYP153A M228L-CPR BM3 Adding into 100 μ L freshly prepared competent cells of Escherichia coli BL21, mixing gently, and ice-cooling for 30 min; 10 uL of recombinant plasmid pET21b-CYP153A-CPR BM3 Adding into 100 μ L freshly prepared competent cells of Escherichia coli BL21, mixing gently, and ice-cooling for 30 min; mu.L of the recombinant plasmid pCDFDuet-1-MaMACS-PpFadE and the recombinant plasmid pET28a-SUMO-ctYdii were simultaneously added to 100. mu.L of competent cells of freshly prepared E.coli gene-deleted bacteria BL 21. delta. FadB, R and J.
② heat-shocking at 42 ℃ for 90s, then rapidly placing in an ice bath for cooling for 3 min;
thirdly, inoculating the competent cells into 500 mu L LB culture medium, and performing shaking culture at 37 ℃ and 200rpm for 60 min;
fourthly, 200 mu L of the bacterial liquid is taken and coated on LB solid culture medium with 100mg/mL, 50mg/mL, 40mg/mL ampicillin, kanamycin and streptomycin;
fifthly, the incubator is upright for 30min at 37 ℃, and the plate is inverted to be cultivated for 12-16h at 37 ℃ after the bacterial liquid is sucked dry.
(3) Identification of positive clones:
expression of protein and identification of solubility
Taking 900 mu L of the bacterial liquid, adding IPTG with the final concentration of 0.32mM, inducing expression for 4h, centrifuging at 12000rpm for 1min, collecting thalli, adding 2 times of loading buffer solution, re-suspending the thalli, carrying out water bath denaturation at 100 ℃ for 10min, detecting protein expression by SDS-PAGE, and displaying the result as positive clone as shown in figure 7.
② sequencing of the bacterial sample
The positive clones identified by the two methods are sent to a sequencing company for sequencing, the correctness of the constructed positive clones is further proved, and escherichia coli BL21 delta FadB, R and J, pCDFDuet-1-MaMACS-PpFadE and pET28a-SUMO-ctYdii are obtained; escherichia coli BL21pET21b-CYP153A M228L-CPR BM3 (ii) a Escherichia coli BL21pET21b-CYP153A-CPR BM3
Example 5
Coli BL21 Δ FadB, R, J, pCDFDuet-1-MaMACS-PpFadE, pET28a-SUMO-ctYdii and E.coli BL21pET21b-CYP153A M228L-CPR BM3 Fermentation of fusion enzyme engineering bacteria
(1) Activating strains: escherichia coli BL 21. delta. FadB, R, J, pCDFDuet-1-MaMACS-PpFadE, pET28a-SUMO-ctYdii in example 4 were inoculated in 50mL of liquid LB medium containing kanamycin and streptomycin at an inoculum size of 1%, and cultured with shaking at 200rpm at 37 ℃ for 12 hours;
(2) transferring thalli: taking 3mL of the activated strain, inoculating the activated strain into 300mL of liquid culture medium containing kanamycin and streptomycin, carrying out shaking culture at 37 ℃ and 200rpm until the OD600 of the bacterial liquid is 1.0, cooling to 20 ℃ to adapt for 1 hour, adding IPTG (isopropyl-beta-thiogalactoside) to ensure that the concentration of IPTG in the culture medium is 0.5mM, adding oleic acid to ensure that the concentration of oleic acid in the culture medium is 0.6 percent by mass, adding Tween 80 to ensure that the concentration of Tween 80 in the culture medium is 0.3 percent by mass, and carrying out overnight induction culture;
(3) and (3) collecting thalli: taking 300mL of the bacterial liquid, centrifuging at 5000rpm and 4 ℃ for 15min, and collecting thalli;
(4) the pellet was washed three times with 0.85% physiological saline, and bacterial suspension was prepared by resuspending the cells in transformation medium. The transformation medium contained 100mM potassium phosphate buffer (pH7.4), glycerol at a mass concentration of 1%, glucose at a mass concentration of 0.4%, kanamycin antibiotic at 50. mu.g/mL, streptomycin at 40. mu.g/mL in a total volume of 30mL, and 0.5g/L of capric acid was added to each of them to carry out the reaction. The reaction was carried out at 30 ℃ for 20h and samples were taken at 9 h.
Escherichia coli BL21pET21b-CYP153A M228L-CPR BM3 Fermentation of fusion enzyme engineering bacteria
(1) Activating strains: coli BL21pET21b-CYP153A M228L-CPR in example 4 BM3 Inoculating to 50mL of liquid LB medium containing ampicillin at an inoculum size of 1%, and culturing at 37 deg.C under shaking at 200rpm for 12 h;
(2) transferring thalli: inoculating 3mL of the activated strain into 300mL of liquid culture medium containing ampicillin, performing shake culture at 37 deg.C and 200rpm until OD600 of the bacterial solution is 1.0, cooling to 20 deg.C for adaptation for 1 hr, adding IPTG to make IPTG concentration in the culture medium 0.5mM, and adding FeCl to make final concentration 0.5mM 3 Continuously carrying out induction culture on the 5-ALA (5-aminolevulinic acid hydrochloride) with the final concentration of 0.5mM for 18 hours, and separating cells to prepare induced cells;
(3) and (3) collecting thalli: taking 300mL of the bacterial liquid, centrifuging at 5000rpm and 4 ℃ for 15min, and collecting thalli;
(4) the pellet was washed three times with 0.85% physiological saline, and the bacterial suspension was prepared by resuspending the cells in a transformation medium. The transformation medium contained 100mM potassium phosphate buffer (pH7.4), the volume of the cell after resuspension was 3mL, and the cell was added to the reaction system in which the previous reaction was completed, and the reaction was carried out at 30 ℃ for 20 hours and then sampled. After the reaction was terminated, 1mL of 0.4mol/L HCl was added to terminate the reaction, and 0.1g/L lauric acid was added as an internal standard.
Silanization treatment of fermentation liquor: 1mL of the fermentation broth was placed in a 1.5mL centrifuge tube, 1.5mL of ethyl acetate was used per sample to extract the fatty acids (750. mu.L each) from the sample solution, mixed in a vortex mixer for 60s, and centrifuged at 4000r/m for 10min at room temperature. The extract was evaporated to dryness, and the dried sample was redissolved in 0.5mL ethyl acetate (chromatographically pure) and 0.5mL n-hexane (chromatographically pure), 100. mu.L BSTFA-TMCS (99:1, v/v) derivatization reagent was added, and then left at room temperature for 5min, and incubated in an oven at 70 ℃ for 50 min.
Gas mass spectrum detection to generate a product: the gas chromatography takes helium as carrier gas, the constant flow mode is adopted, the sample injection volume is 1 mu L, the split flow sample injection is carried out, the split flow ratio is 1: 5, the sample injection temperature is 250 ℃, the temperature is kept at 50 ℃ for 1min, the temperature is increased to 250 ℃ at 15 ℃/min, and the temperature is kept for 10 min. The product chromatograms are shown in fig. 8, 9 and 10.
By the chromatogram and mass spectrogram calculation and analysis of the product, 0.5g/L of capric acid is obtained by shake flask fermentation in the process of producing 10-hydroxy-2-decenoic acid with high added value by capric acid through two-step method to generate 0.273g/L of 10-hydroxy-2-decenoic acid, and the conversion rate is 54.6 percent
Comparative example 1
The difference from the fermentation of the recombinant bacteria in example 5 is that the Escherichia coli BL21pET21b-CYP153A-CPR obtained in example 4 is used BM3 Instead of Escherichia coli BL21pET21b-CYP153A M228L-CPR BM3 The other steps are the same, and the experimental result shows that 0.5g/L decanoic acid produces 0.077 g/L10-hydroxy-2-decenoic acid through shaking flask fermentation, and the conversion rate is 15.4 percent
Comparative example 2
Recombinant plasmid pET21b-CYP153A M228L-CPR BM3 The difference between the transformation of the recombinant plasmid pCDFDuet-1-MaMACS-PpFadE and the recombinant plasmid pET28a-SUMO-ctYdii and the transformation of the recombinant plasmid pCDFDuet-1-MaMACS-PpFadE and the recombinant plasmid pET28a-SUMO-ctYdii in the embodiment 4 is that a competent cell of the Escherichia coli gene deletion bacterium BL21 (delta FadB, R) is prepared in the same way, and the recombinant plasmid pCDFDuet-1-MaMACS-PpFadE and the recombinant plasmid pET28a-SUMO-ctYdii are transformed into a competent cell of the freshly prepared Escherichia coli gene deletion bacterium BL21 delta FadB, R to obtain Escherichia coli BL21 delta FadB, R, pCDFDuet-1-MaMACS-PpFadE and pET28 a-SUMO-ctYdii; the others are the same.
The obtained Escherichia coli BL21 Δ FadB, R, pCDFDuet-1-MaMACS-PpFadE, pET28a-SUMO-ctYdii and Escherichia coli BL21pET21b-CYP153A M228L-CPR BM3 The fermentation method of the fusion enzyme engineering bacteria is the same as that of the example 5, and the experimental result shows that the escherichia coli BL21 delta FadB, R, pCDFDuet-1-MaMACS-PpFadE and pET28a-SUMO-ctYdii can not catalyze decanoic acid to produce trans-2-decenoic acid, so that 10-hydroxy-2 decenoic acid can not be produced.
According to the experiment, 10-HDA is generated by using capric acid as a substrate and utilizing two-step biological cascade catalysis, 10-HAD is synthesized in one step by using capric acid as a substrate in a previous laboratory, a synthesis path constructed by optimally obtained fatty acyl CoA dehydrogenase genes PpFadE, fatty acyl CoA synthetase genes MaMACS and acyl CoA thioesterase genes ctydiI is not the same as that constructed by fatty acyl CoA dehydrogenase genes MCAD, fatty acyl CoA synthetase genes FadK and acyl CoA thioesterase genes ydiI in patent document CN109897870A, P450 fusion enzyme in the experiment changes 228-site amino acid from M to L, and the yield of 10-HDA can be remarkably improved by replacing a catalytic element and changing a biosynthesis mode.
From the experimental results of example 5 and comparative example 2, it can be seen that the transformed host bacteria of the present invention using E.coli gene-deleted bacteria BL21 Δ FadB, R and J as recombinant plasmids pCDFDuet-1-MaMACS-PpFadE and pET28a-SUMO-ctYdii can catalyze the production of trans-2-decenoic acid by decanoic acid, and have specificity to E.coli BL21pET21 b-CYP153AM228L-CPR BM3 The 10-hydroxy-2-decenoic acid is synthesized by combining the fusion enzyme engineering bacteria with a two-step method, and the final conversion rate of the 10-hydroxy-2-decenoic acid is 54.6 percent and is obviously superior to the effect of taking Escherichia coli gene deletion bacteria BL21 delta FadB and R as host bacteria.
SEQUENCE LISTING
<110> university of Qilu Industrial science
<120> escherichia coli engineering bacterium and application
<160> 32
<170> PatentIn version 3.5
<210> 1
<211> 42
<212> DNA
<213> Artificial sequence
<400> 1
taagaaggag atatacatat gatgccgacg ttaccacgta cc 42
<210> 2
<211> 39
<212> DNA
<213> Artificial sequence
<400> 2
tgccgcccat actattaggt gtcagtttaa ccattaagc 39
<210> 3
<211> 28
<212> DNA
<213> Artificial sequence
<400> 3
acctaatagt atgggcggca ttccttca 28
<210> 4
<211> 41
<212> DNA
<213> Artificial sequence
<400> 4
gtggtggtgg tggtgctcga gttacccagc ccacacgtct t 41
<210> 5
<211> 23
<212> DNA
<213> Artificial sequence
<400> 5
cgcaccggcc aagcgatcgc tcc 23
<210> 6
<211> 23
<212> DNA
<213> Artificial sequence
<400> 6
ggagcgatcg cttggccggt gcg 23
<210> 7
<211> 30
<212> DNA
<213> Artificial sequence
<400> 7
atgtcagata ccaccaccgc atttaccgtt 30
<210> 8
<211> 25
<212> DNA
<213> Artificial sequence
<400> 8
atgtcagata ccaccaccgc attta 25
<210> 9
<211> 32
<212> DNA
<213> Artificial sequence
<400> 9
atggattttg cctatagtcc gaaagttcag gc 32
<210> 10
<211> 32
<212> DNA
<213> Artificial sequence
<400> 10
ttccggttga aatgctgcgc tcaggtcgtt aa 32
<210> 11
<211> 41
<212> DNA
<213> Artificial sequence
<400> 11
agagaacaga ttggtggatc cggatccatg atttggcagc g 41
<210> 12
<211> 41
<212> DNA
<213> Artificial sequence
<400> 12
gtggtggtgg tggtgctcga gctcgagtta cacaacggcg g 41
<210> 13
<211> 3195
<212> DNA
<213> Artificial sequence
<400> 13
atgccgacgt taccacgtac ctttgatgac attcagtctc gcttaatcaa tgctacaagt 60
cgtgtggttc caatgcagcg tcagattcag ggtctgaaat ttctgatgag tgccaaacgc 120
aaaacctttg gtccacgtcg cccaatgccg gaatttgtgg aaacacctat cccggatgtt 180
aatacattag ccttagagga cattgatgtg agtaatccgt ttctgtatcg ccagggccag 240
tggcgcgcat attttaaacg cttacgcgat gaagctccag ttcattatca gaaaaatagc 300
ccatttggtc cgttttggag cgtgacccgc tttgaggaca ttctgtttgt ggataaatca 360
catgatctgt ttagcgccga accacagatc atcttaggtg atcctccgga aggcctgtca 420
gtggaaatgt ttattgcgat ggaccctcct aaacatgatg tgcagcgctc tagtgttcag 480
ggtgtggttg cccctaaaaa tctgaaagaa atggaaggcc tgattcgtag tcgtacgggc 540
gatgtgttag attcattacc gacggataaa ccgtttaatt gggttcctgc ggtgagcaaa 600
gaactgacgg gtagaatgct ggctacctta ctggattttc cgtatgaaga acgtcataaa 660
ctggttgaat ggagcgatcg catggccggt gcggcaagtg ctacgggcgg cgaatttgcg 720
gatgaaaatg ctatgtttga tgatgcggca gatatggcac gctctttttc tcgcctgtgg 780
cgcgataaag aagcccgccg tgcagcaggc gaagaaccgg gctttgattt aatctcactg 840
ctacagtcta ataaagaaac caaggatctg atcaatcgtc ctatggaatt tattggcaat 900
ctgaccctgc tgattgtggg cggtaatgat acgacccgca atagcatgtc aggcggctta 960
gttgccatga atgaatttcc tcgtgaattt gaaaaactga aagccaaacc ggaactgatt 1020
ccgaatatgg tgagcgaaat tattcgttgg cagacaccac tggcctatat gcgccgcatt 1080
gccaaacagg atgttgaact gggcggtcag accatcaaaa aaggtgatcg cgttgttatg 1140
tggtatgcct caggtaatcg cgatgaacgt aaatttgata atccggatca gtttattatc 1200
gatcgtaaag atgcacgcaa tcacatgtct tttggctatg gtgttcatcg ctgtatgggt 1260
aatcgtctgg ccgaattaca gctgcgtatt ctgtgggaag aaatcttaaa acgctttgat 1320
aatatcgaag ttgtggaaga accagaacgt gtgcagagca attttgttcg cggctatagc 1380
cgcttaatgg ttaaactgac acctaatagt atgggcggca ttccttcacc aagccgagag 1440
cagtcagcta aaaaagagcg caaaaccgta gaaaacgctc ataatacgcc gcttcttgtg 1500
ctatacggtt caaatatggg aacagccgaa ggaacggcgc gtgatttagc ggatattgcg 1560
atgagcaaag gattcgcacc gcaagtcgca acgcttgatt cccacgcagg aaaccttccg 1620
cgtgaaggag ctgttttaat tgtaacggct tcttataacg gtcatcctcc tgataacgca 1680
aaggaatttg ttgactggtt agaccaagcg tctgctgatg aagtaaaagg cgtgcgctac 1740
tccgtatttg gatgcggtga taaaaactgg gcgacaacgt atcaaaaagt gcctgctttt 1800
attgatgaaa ctcttgccgc taaaggggca gaaaacatag ctgaacgcgg tgaagcagat 1860
gcaagcgacg actttgaagg cacatacgaa gaatggcgtg aacacatgtg gagtgactta 1920
gcagcctact ttaacttaga cattgaaaac agcgaagaaa atgcgtctac gctttcactt 1980
caatttgtcg acagcgctgc ggacatgccg cttgcgaaaa tgcaccgtgc gttttcagca 2040
aacgtcgtag caagcaaaga gcttcaaaag ccaggcagtg cacgaagcac gcgtcatctt 2100
gaaattgaac ttccaaaaga agcttcttat caagaaggag atcatttagg tgttattcct 2160
cgcaactatg aaggaatagt aaatcgtgta gcaacaagat ttggtctaga tgcatcacag 2220
caaatccgtt tggaagctga agaagaaaaa ttagctcatt tgccactcgg taaaacagta 2280
tcagtagaag agcttctgca atacgtggag cttcaagatc ctgttacgcg cacgcagctt 2340
cgcgcaatgg ctgctaaaac agtctgcccg ccgcataaag tagagcttga agtcttgctt 2400
gaaaagcagg cgtacaaaga acaagtgctg gcaaaacgtt taacaatgct tgaactgctt 2460
gaaaaatatc cggcgtgtga aatggaattc agcgaattta tcgcacttct tccaagcatg 2520
cgtccgcgct attactcaat ttcttcatca cctcgtgtcg atgaaaaaca agcaagcatc 2580
acggtcagcg ttgtttcagg agaagcgtgg agcggatacg gagaatacaa aggaattgca 2640
tcgaactatc ttgccaatct gcaagaagga gatacgatta cgtgctttgt ttccacaccg 2700
cagtcaggat ttacgctgcc aaaaggccct gaaacaccac ttatcatggt aggaccggga 2760
acaggcgtcg cgccgtttag aggctttgtg caggctcgca agcagttaaa agaacaagga 2820
cagtcgcttg gagaagcgca tttatacttt ggctgccgtt cacctcatga agattatctg 2880
tatcaaaaag agcttgaaaa cgcccaaaat gaaggcatca ttacgcttca taccgctttt 2940
tctcgcgtac caaatcagcc gaaaacatac gttcaacacg tgatggaaca agacggcaag 3000
aaattgattg aacttcttga ccaaggagcg cacttctata tttgcggaga cggaagccaa 3060
atggcacctg acgttgaagc aacgcttatg aaaagctatg ctgaagttca ccaagtgagt 3120
gaagcagacg ctcgcttatg gctgcagcag ctagaagaaa agggccgata cgcaaaagac 3180
gtgtgggctg ggtaa 3195
<210> 14
<211> 3195
<212> DNA
<213> Artificial sequence
<400> 14
atgccgacgt taccacgtac ctttgatgac attcagtctc gcttaatcaa tgctacaagt 60
cgtgtggttc caatgcagcg tcagattcag ggtctgaaat ttctgatgag tgccaaacgc 120
aaaacctttg gtccacgtcg cccaatgccg gaatttgtgg aaacacctat cccggatgtt 180
aatacattag ccttagagga cattgatgtg agtaatccgt ttctgtatcg ccagggccag 240
tggcgcgcat attttaaacg cttacgcgat gaagctccag ttcattatca gaaaaatagc 300
ccatttggtc cgttttggag cgtgacccgc tttgaggaca ttctgtttgt ggataaatca 360
catgatctgt ttagcgccga accacagatc atcttaggtg atcctccgga aggcctgtca 420
gtggaaatgt ttattgcgat ggaccctcct aaacatgatg tgcagcgctc tagtgttcag 480
ggtgtggttg cccctaaaaa tctgaaagaa atggaaggcc tgattcgtag tcgtacgggc 540
gatgtgttag attcattacc gacggataaa ccgtttaatt gggttcctgc ggtgagcaaa 600
gaactgacgg gtagaatgct ggctacctta ctggattttc cgtatgaaga acgtcataaa 660
ctggttgaat ggagcgatcg cttggccggt gcggcaagtg ctacgggcgg cgaatttgcg 720
gatgaaaatg ctatgtttga tgatgcggca gatatggcac gctctttttc tcgcctgtgg 780
cgcgataaag aagcccgccg tgcagcaggc gaagaaccgg gctttgattt aatctcactg 840
ctacagtcta ataaagaaac caaggatctg atcaatcgtc ctatggaatt tattggcaat 900
ctgaccctgc tgattgtggg cggtaatgat acgacccgca atagcatgtc aggcggctta 960
gttgccatga atgaatttcc tcgtgaattt gaaaaactga aagccaaacc ggaactgatt 1020
ccgaatatgg tgagcgaaat tattcgttgg cagacaccac tggcctatat gcgccgcatt 1080
gccaaacagg atgttgaact gggcggtcag accatcaaaa aaggtgatcg cgttgttatg 1140
tggtatgcct caggtaatcg cgatgaacgt aaatttgata atccggatca gtttattatc 1200
gatcgtaaag atgcacgcaa tcacatgtct tttggctatg gtgttcatcg ctgtatgggt 1260
aatcgtctgg ccgaattaca gctgcgtatt ctgtgggaag aaatcttaaa acgctttgat 1320
aatatcgaag ttgtggaaga accagaacgt gtgcagagca attttgttcg cggctatagc 1380
cgcttaatgg ttaaactgac acctaatagt atgggcggca ttccttcacc aagccgagag 1440
cagtcagcta aaaaagagcg caaaaccgta gaaaacgctc ataatacgcc gcttcttgtg 1500
ctatacggtt caaatatggg aacagccgaa ggaacggcgc gtgatttagc ggatattgcg 1560
atgagcaaag gattcgcacc gcaagtcgca acgcttgatt cccacgcagg aaaccttccg 1620
cgtgaaggag ctgttttaat tgtaacggct tcttataacg gtcatcctcc tgataacgca 1680
aaggaatttg ttgactggtt agaccaagcg tctgctgatg aagtaaaagg cgtgcgctac 1740
tccgtatttg gatgcggtga taaaaactgg gcgacaacgt atcaaaaagt gcctgctttt 1800
attgatgaaa ctcttgccgc taaaggggca gaaaacatag ctgaacgcgg tgaagcagat 1860
gcaagcgacg actttgaagg cacatacgaa gaatggcgtg aacacatgtg gagtgactta 1920
gcagcctact ttaacttaga cattgaaaac agcgaagaaa atgcgtctac gctttcactt 1980
caatttgtcg acagcgctgc ggacatgccg cttgcgaaaa tgcaccgtgc gttttcagca 2040
aacgtcgtag caagcaaaga gcttcaaaag ccaggcagtg cacgaagcac gcgtcatctt 2100
gaaattgaac ttccaaaaga agcttcttat caagaaggag atcatttagg tgttattcct 2160
cgcaactatg aaggaatagt aaatcgtgta gcaacaagat ttggtctaga tgcatcacag 2220
caaatccgtt tggaagctga agaagaaaaa ttagctcatt tgccactcgg taaaacagta 2280
tcagtagaag agcttctgca atacgtggag cttcaagatc ctgttacgcg cacgcagctt 2340
cgcgcaatgg ctgctaaaac agtctgcccg ccgcataaag tagagcttga agtcttgctt 2400
gaaaagcagg cgtacaaaga acaagtgctg gcaaaacgtt taacaatgct tgaactgctt 2460
gaaaaatatc cggcgtgtga aatggaattc agcgaattta tcgcacttct tccaagcatg 2520
cgtccgcgct attactcaat ttcttcatca cctcgtgtcg atgaaaaaca agcaagcatc 2580
acggtcagcg ttgtttcagg agaagcgtgg agcggatacg gagaatacaa aggaattgca 2640
tcgaactatc ttgccaatct gcaagaagga gatacgatta cgtgctttgt ttccacaccg 2700
cagtcaggat ttacgctgcc aaaaggccct gaaacaccac ttatcatggt aggaccggga 2760
acaggcgtcg cgccgtttag aggctttgtg caggctcgca agcagttaaa agaacaagga 2820
cagtcgcttg gagaagcgca tttatacttt ggctgccgtt cacctcatga agattatctg 2880
tatcaaaaag agcttgaaaa cgcccaaaat gaaggcatca ttacgcttca taccgctttt 2940
tctcgcgtac caaatcagcc gaaaacatac gttcaacacg tgatggaaca agacggcaag 3000
aaattgattg aacttcttga ccaaggagcg cacttctata tttgcggaga cggaagccaa 3060
atggcacctg acgttgaagc aacgcttatg aaaagctatg ctgaagttca ccaagtgagt 3120
gaagcagacg ctcgcttatg gctgcagcag ctagaagaaa agggccgata cgcaaaagac 3180
gtgtgggctg ggtaa 3195
<210> 15
<211> 1653
<212> DNA
<213> Artificial sequence
<400> 15
atgtcagata ccaccaccgc atttaccgtt ccagcggttg ccaaagcagt tgccgcagcc 60
attccggatc gcgaactgat tattcagggt gatcgtcgct atacctatcg tcaggttatt 120
gaacgctcaa atagattagc tgcatattta cattcacagg gcttaggctg tcataccgaa 180
cgcgaagcct tagcaggtca tgaagttggc caggatctgc tgggcctgta tgcatataat 240
ggcaatgaat ttgtggaagc cttactgggt gcctttgcag ctagggtggc cccgtttaat 300
gtgaattttc gctatgttaa atcagaatta cattatctgt tagccgatag tgaagcaacc 360
gccctgattt atcatgcagc ctttgccccg cgtgtggcag aaattctgcc ggaactgccg 420
cgtctgcgcg tgctgattca gattgcagat gaatcaggta atgaattact ggatggtgca 480
gttgattatg aagatgcctt agcaagcgtg agcgcccagc cgccgccggt tcgtcattgt 540
ccggatgatc tgtatgttct gtataccggc ggtaccaccg gtatgccgaa aggcgtttta 600
tggcgtcagc atgatatttt tatgacctct tttggcggtc gtaatctgat gaccggcgaa 660
cctagctcta gtattgatga aattgttcag cgcgcagcct caggtccggg taccaaatta 720
atgattctgc cgccgttaat tcatggtgcc gcacagtgga gtgttatgac cgcaattacc 780
accggccaga ccgtggtgtt tccgaccgtt gtggatcatc tggatgcaga agatgtggtt 840
cgtaccattg aacgtgaaaa agttatggtt gtgaccgtgg tgggcgatgc aatggcacgt 900
ccgttagttg ccgcaattga aaaaggtatt gccgatgtgt cttcactagc cgtggtagcc 960
aatggcggcg ccctgctgac cccgtttgtt aaacagcgtc tgattgaagt gctgccgaat 1020
gcagtggttg tggatggtgt tggctcaagc gaaaccggtg cacagatgca tcacatgtct 1080
acccccggcg ccgtggcaac cggtaccttt aatgcaggtc cggatacctt tgttgccgca 1140
gaggacctga gcgccatttt accgccgggc catgaaggca tgggctggtt agcccagcgc 1200
ggctatgttc cgttaggcta taaaggcgat gcagccaaaa ccgccaaaac ctttccggtt 1260
attgatggcg tgcgctatgc agttccgggt gatcgcgcac gtcatcatgc agatggtcat 1320
attgaactgc tgggtcgcga tagtgtttgt attaatagcg gcggcgaaaa aatttttgtg 1380
gaagaagtgg aaaccgcaat tgcctcacat ccggcagttg ccgatgtggt tgtggcaggt 1440
cgtccgagtg aacgctgggg tcaggaagtt gttgcagttg tggccctgag cgatggtgca 1500
gcagtggatg caggcgaact gattgcacat gcctctaatt ccctggctcg ctataaactg 1560
ccgaaagcca ttgtgtttcg cccggttatt gaacgctctc cgagcggtaa agccgattat 1620
cgttgggcac gcgaacaggc agttaatggt taa 1653
<210> 16
<211> 1227
<212> DNA
<213> Artificial sequence
<400> 16
gattttgcct atagtccgaa agttcaggca ttacgtgaac gtgtgaccgc ctttatggat 60
gcacatgtgt atccagccga agcagtgttt gaacgccagg ttgccgaagg tgatcgctgg 120
cagccgaccg ccattatgga agaactgaaa gccaaagcac gcgccgaagg cctgtggaat 180
ctgtttctgc cggaatcaga atatggtgca ggtctgtcta atctggaata tgcaccgtta 240
gcagaaatta tgggccgtag cttactgggc ccggaaccgt ttaattgtag tgccccggat 300
accggtaata tggaagtttt agttcgctat ggtagcgaag cccagaaacg tcagtggtta 360
gaaccgttac tgcgcggtga aattcgtagt gcctttgcaa tgaccgaacc ggatgttgca 420
tctagcgatg ccaccaatat ggcagcaacc gcaattcgcg atggcgatca gtgggttatt 480
aatggtcgca aatggtggac ctcaggcgcc tgtgatccgc gttgtaaagt gatgattttt 540
atgggcttaa gcgatccgga aggcccgcgt catcagcagc attcaatggt gctggttccg 600
accgatacgc caggtgttaa aattgtgcgt ccgctgccgg tgtttggcta tgatgatgcc 660
ccgcatggtc atgccgaagt gctgtttgaa aatgttcgtg ttccgtatga aaatgttatt 720
ttaggcgaag gtcgcggctt tgaaattgca cagggtcgtc tggggcctgg tcgtattcat 780
cattgtatgc gctctattgg catggcagaa cgcgcattag aactgatgtg taaacgctca 840
gttgaacgta ccgcctttgg tcgtccgtta gcacgtctgg gcggtaatgt ggataaaatt 900
gcagattctc gcatggaaat tgatatggca cgcttactga ccttaaaagc cgcctatatg 960
atggataccg tgggtaataa agttgcacgc tctgaaattg cacagattaa agttgtggcc 1020
ccgaatgtgg ccctgaatgt tattgatcgt gccattcaga ttcatggcgg cgcaggcgtg 1080
agcggcgatt ttccgttagc ctatatgtat gccatgcagc gtaccctgcg tttagcagat 1140
ggtccggatg aagttcatcg cgcagccatt ggcaaatatg aaattggtaa atatgttccg 1200
gttgaaatgc tgcgctcagg tcgttaa 1227
<210> 17
<211> 423
<212> DNA
<213> Artificial sequence
<400> 17
ggatccatga tttggcagcg caccgccacc ctggatgcac tgaatgcaat gggtgcgaat 60
aatatggtgg gcctgctgga tattcgcttt acccgtctgg atgataatga aattgaagca 120
accatgccgg ttgatcatcg tacccatcaa cctttcggtt tactgcatgg cggcgcaagc 180
gtggtgttag ccgaaacctt aggtagtgtt gcaggctatc tgtgtaccga aggcgaacag 240
aatattgtgg gcttagaagt taatgccaat catttacgct cagtgcgtag cggtcgcgtg 300
cgcggcgtgt gtcgcgcagt tcatgtgggt cgtcgtcatc aggtttggca gattgaaatt 360
tttgatgaac aggatcgctt atgttgtagc tctcgtctga ccaccgccgt tgtgtaactc 420
gag 423
<210> 18
<211> 1064
<212> PRT
<213> Artificial sequence
<400> 18
Met Pro Thr Leu Pro Arg Thr Phe Asp Asp Ile Gln Ser Arg Leu Ile
1 5 10 15
Asn Ala Thr Ser Arg Val Val Pro Met Gln Arg Gln Ile Gln Gly Leu
20 25 30
Lys Phe Leu Met Ser Ala Lys Arg Lys Thr Phe Gly Pro Arg Arg Pro
35 40 45
Met Pro Glu Phe Val Glu Thr Pro Ile Pro Asp Val Asn Thr Leu Ala
50 55 60
Leu Glu Asp Ile Asp Val Ser Asn Pro Phe Leu Tyr Arg Gln Gly Gln
65 70 75 80
Trp Arg Ala Tyr Phe Lys Arg Leu Arg Asp Glu Ala Pro Val His Tyr
85 90 95
Gln Lys Asn Ser Pro Phe Gly Pro Phe Trp Ser Val Thr Arg Phe Glu
100 105 110
Asp Ile Leu Phe Val Asp Lys Ser His Asp Leu Phe Ser Ala Glu Pro
115 120 125
Gln Ile Ile Leu Gly Asp Pro Pro Glu Gly Leu Ser Val Glu Met Phe
130 135 140
Ile Ala Met Asp Pro Pro Lys His Asp Val Gln Arg Ser Ser Val Gln
145 150 155 160
Gly Val Val Ala Pro Lys Asn Leu Lys Glu Met Glu Gly Leu Ile Arg
165 170 175
Ser Arg Thr Gly Asp Val Leu Asp Ser Leu Pro Thr Asp Lys Pro Phe
180 185 190
Asn Trp Val Pro Ala Val Ser Lys Glu Leu Thr Gly Arg Met Leu Ala
195 200 205
Thr Leu Leu Asp Phe Pro Tyr Glu Glu Arg His Lys Leu Val Glu Trp
210 215 220
Ser Asp Arg Met Ala Gly Ala Ala Ser Ala Thr Gly Gly Glu Phe Ala
225 230 235 240
Asp Glu Asn Ala Met Phe Asp Asp Ala Ala Asp Met Ala Arg Ser Phe
245 250 255
Ser Arg Leu Trp Arg Asp Lys Glu Ala Arg Arg Ala Ala Gly Glu Glu
260 265 270
Pro Gly Phe Asp Leu Ile Ser Leu Leu Gln Ser Asn Lys Glu Thr Lys
275 280 285
Asp Leu Ile Asn Arg Pro Met Glu Phe Ile Gly Asn Leu Thr Leu Leu
290 295 300
Ile Val Gly Gly Asn Asp Thr Thr Arg Asn Ser Met Ser Gly Gly Leu
305 310 315 320
Val Ala Met Asn Glu Phe Pro Arg Glu Phe Glu Lys Leu Lys Ala Lys
325 330 335
Pro Glu Leu Ile Pro Asn Met Val Ser Glu Ile Ile Arg Trp Gln Thr
340 345 350
Pro Leu Ala Tyr Met Arg Arg Ile Ala Lys Gln Asp Val Glu Leu Gly
355 360 365
Gly Gln Thr Ile Lys Lys Gly Asp Arg Val Val Met Trp Tyr Ala Ser
370 375 380
Gly Asn Arg Asp Glu Arg Lys Phe Asp Asn Pro Asp Gln Phe Ile Ile
385 390 395 400
Asp Arg Lys Asp Ala Arg Asn His Met Ser Phe Gly Tyr Gly Val His
405 410 415
Arg Cys Met Gly Asn Arg Leu Ala Glu Leu Gln Leu Arg Ile Leu Trp
420 425 430
Glu Glu Ile Leu Lys Arg Phe Asp Asn Ile Glu Val Val Glu Glu Pro
435 440 445
Glu Arg Val Gln Ser Asn Phe Val Arg Gly Tyr Ser Arg Leu Met Val
450 455 460
Lys Leu Thr Pro Asn Ser Met Gly Gly Ile Pro Ser Pro Ser Arg Glu
465 470 475 480
Gln Ser Ala Lys Lys Glu Arg Lys Thr Val Glu Asn Ala His Asn Thr
485 490 495
Pro Leu Leu Val Leu Tyr Gly Ser Asn Met Gly Thr Ala Glu Gly Thr
500 505 510
Ala Arg Asp Leu Ala Asp Ile Ala Met Ser Lys Gly Phe Ala Pro Gln
515 520 525
Val Ala Thr Leu Asp Ser His Ala Gly Asn Leu Pro Arg Glu Gly Ala
530 535 540
Val Leu Ile Val Thr Ala Ser Tyr Asn Gly His Pro Pro Asp Asn Ala
545 550 555 560
Lys Glu Phe Val Asp Trp Leu Asp Gln Ala Ser Ala Asp Glu Val Lys
565 570 575
Gly Val Arg Tyr Ser Val Phe Gly Cys Gly Asp Lys Asn Trp Ala Thr
580 585 590
Thr Tyr Gln Lys Val Pro Ala Phe Ile Asp Glu Thr Leu Ala Ala Lys
595 600 605
Gly Ala Glu Asn Ile Ala Glu Arg Gly Glu Ala Asp Ala Ser Asp Asp
610 615 620
Phe Glu Gly Thr Tyr Glu Glu Trp Arg Glu His Met Trp Ser Asp Leu
625 630 635 640
Ala Ala Tyr Phe Asn Leu Asp Ile Glu Asn Ser Glu Glu Asn Ala Ser
645 650 655
Thr Leu Ser Leu Gln Phe Val Asp Ser Ala Ala Asp Met Pro Leu Ala
660 665 670
Lys Met His Arg Ala Phe Ser Ala Asn Val Val Ala Ser Lys Glu Leu
675 680 685
Gln Lys Pro Gly Ser Ala Arg Ser Thr Arg His Leu Glu Ile Glu Leu
690 695 700
Pro Lys Glu Ala Ser Tyr Gln Glu Gly Asp His Leu Gly Val Ile Pro
705 710 715 720
Arg Asn Tyr Glu Gly Ile Val Asn Arg Val Ala Thr Arg Phe Gly Leu
725 730 735
Asp Ala Ser Gln Gln Ile Arg Leu Glu Ala Glu Glu Glu Lys Leu Ala
740 745 750
His Leu Pro Leu Gly Lys Thr Val Ser Val Glu Glu Leu Leu Gln Tyr
755 760 765
Val Glu Leu Gln Asp Pro Val Thr Arg Thr Gln Leu Arg Ala Met Ala
770 775 780
Ala Lys Thr Val Cys Pro Pro His Lys Val Glu Leu Glu Val Leu Leu
785 790 795 800
Glu Lys Gln Ala Tyr Lys Glu Gln Val Leu Ala Lys Arg Leu Thr Met
805 810 815
Leu Glu Leu Leu Glu Lys Tyr Pro Ala Cys Glu Met Glu Phe Ser Glu
820 825 830
Phe Ile Ala Leu Leu Pro Ser Met Arg Pro Arg Tyr Tyr Ser Ile Ser
835 840 845
Ser Ser Pro Arg Val Asp Glu Lys Gln Ala Ser Ile Thr Val Ser Val
850 855 860
Val Ser Gly Glu Ala Trp Ser Gly Tyr Gly Glu Tyr Lys Gly Ile Ala
865 870 875 880
Ser Asn Tyr Leu Ala Asn Leu Gln Glu Gly Asp Thr Ile Thr Cys Phe
885 890 895
Val Ser Thr Pro Gln Ser Gly Phe Thr Leu Pro Lys Gly Pro Glu Thr
900 905 910
Pro Leu Ile Met Val Gly Pro Gly Thr Gly Val Ala Pro Phe Arg Gly
915 920 925
Phe Val Gln Ala Arg Lys Gln Leu Lys Glu Gln Gly Gln Ser Leu Gly
930 935 940
Glu Ala His Leu Tyr Phe Gly Cys Arg Ser Pro His Glu Asp Tyr Leu
945 950 955 960
Tyr Gln Lys Glu Leu Glu Asn Ala Gln Asn Glu Gly Ile Ile Thr Leu
965 970 975
His Thr Ala Phe Ser Arg Val Pro Asn Gln Pro Lys Thr Tyr Val Gln
980 985 990
His Val Met Glu Gln Asp Gly Lys Lys Leu Ile Glu Leu Leu Asp Gln
995 1000 1005
Gly Ala His Phe Tyr Ile Cys Gly Asp Gly Ser Gln Met Ala Pro
1010 1015 1020
Asp Val Glu Ala Thr Leu Met Lys Ser Tyr Ala Glu Val His Gln
1025 1030 1035
Val Ser Glu Ala Asp Ala Arg Leu Trp Leu Gln Gln Leu Glu Glu
1040 1045 1050
Lys Gly Arg Tyr Ala Lys Asp Val Trp Ala Gly
1055 1060
<210> 19
<211> 1064
<212> PRT
<213> Artificial sequence
<400> 19
Met Pro Thr Leu Pro Arg Thr Phe Asp Asp Ile Gln Ser Arg Leu Ile
1 5 10 15
Asn Ala Thr Ser Arg Val Val Pro Met Gln Arg Gln Ile Gln Gly Leu
20 25 30
Lys Phe Leu Met Ser Ala Lys Arg Lys Thr Phe Gly Pro Arg Arg Pro
35 40 45
Met Pro Glu Phe Val Glu Thr Pro Ile Pro Asp Val Asn Thr Leu Ala
50 55 60
Leu Glu Asp Ile Asp Val Ser Asn Pro Phe Leu Tyr Arg Gln Gly Gln
65 70 75 80
Trp Arg Ala Tyr Phe Lys Arg Leu Arg Asp Glu Ala Pro Val His Tyr
85 90 95
Gln Lys Asn Ser Pro Phe Gly Pro Phe Trp Ser Val Thr Arg Phe Glu
100 105 110
Asp Ile Leu Phe Val Asp Lys Ser His Asp Leu Phe Ser Ala Glu Pro
115 120 125
Gln Ile Ile Leu Gly Asp Pro Pro Glu Gly Leu Ser Val Glu Met Phe
130 135 140
Ile Ala Met Asp Pro Pro Lys His Asp Val Gln Arg Ser Ser Val Gln
145 150 155 160
Gly Val Val Ala Pro Lys Asn Leu Lys Glu Met Glu Gly Leu Ile Arg
165 170 175
Ser Arg Thr Gly Asp Val Leu Asp Ser Leu Pro Thr Asp Lys Pro Phe
180 185 190
Asn Trp Val Pro Ala Val Ser Lys Glu Leu Thr Gly Arg Met Leu Ala
195 200 205
Thr Leu Leu Asp Phe Pro Tyr Glu Glu Arg His Lys Leu Val Glu Trp
210 215 220
Ser Asp Arg Leu Ala Gly Ala Ala Ser Ala Thr Gly Gly Glu Phe Ala
225 230 235 240
Asp Glu Asn Ala Met Phe Asp Asp Ala Ala Asp Met Ala Arg Ser Phe
245 250 255
Ser Arg Leu Trp Arg Asp Lys Glu Ala Arg Arg Ala Ala Gly Glu Glu
260 265 270
Pro Gly Phe Asp Leu Ile Ser Leu Leu Gln Ser Asn Lys Glu Thr Lys
275 280 285
Asp Leu Ile Asn Arg Pro Met Glu Phe Ile Gly Asn Leu Thr Leu Leu
290 295 300
Ile Val Gly Gly Asn Asp Thr Thr Arg Asn Ser Met Ser Gly Gly Leu
305 310 315 320
Val Ala Met Asn Glu Phe Pro Arg Glu Phe Glu Lys Leu Lys Ala Lys
325 330 335
Pro Glu Leu Ile Pro Asn Met Val Ser Glu Ile Ile Arg Trp Gln Thr
340 345 350
Pro Leu Ala Tyr Met Arg Arg Ile Ala Lys Gln Asp Val Glu Leu Gly
355 360 365
Gly Gln Thr Ile Lys Lys Gly Asp Arg Val Val Met Trp Tyr Ala Ser
370 375 380
Gly Asn Arg Asp Glu Arg Lys Phe Asp Asn Pro Asp Gln Phe Ile Ile
385 390 395 400
Asp Arg Lys Asp Ala Arg Asn His Met Ser Phe Gly Tyr Gly Val His
405 410 415
Arg Cys Met Gly Asn Arg Leu Ala Glu Leu Gln Leu Arg Ile Leu Trp
420 425 430
Glu Glu Ile Leu Lys Arg Phe Asp Asn Ile Glu Val Val Glu Glu Pro
435 440 445
Glu Arg Val Gln Ser Asn Phe Val Arg Gly Tyr Ser Arg Leu Met Val
450 455 460
Lys Leu Thr Pro Asn Ser Met Gly Gly Ile Pro Ser Pro Ser Arg Glu
465 470 475 480
Gln Ser Ala Lys Lys Glu Arg Lys Thr Val Glu Asn Ala His Asn Thr
485 490 495
Pro Leu Leu Val Leu Tyr Gly Ser Asn Met Gly Thr Ala Glu Gly Thr
500 505 510
Ala Arg Asp Leu Ala Asp Ile Ala Met Ser Lys Gly Phe Ala Pro Gln
515 520 525
Val Ala Thr Leu Asp Ser His Ala Gly Asn Leu Pro Arg Glu Gly Ala
530 535 540
Val Leu Ile Val Thr Ala Ser Tyr Asn Gly His Pro Pro Asp Asn Ala
545 550 555 560
Lys Glu Phe Val Asp Trp Leu Asp Gln Ala Ser Ala Asp Glu Val Lys
565 570 575
Gly Val Arg Tyr Ser Val Phe Gly Cys Gly Asp Lys Asn Trp Ala Thr
580 585 590
Thr Tyr Gln Lys Val Pro Ala Phe Ile Asp Glu Thr Leu Ala Ala Lys
595 600 605
Gly Ala Glu Asn Ile Ala Glu Arg Gly Glu Ala Asp Ala Ser Asp Asp
610 615 620
Phe Glu Gly Thr Tyr Glu Glu Trp Arg Glu His Met Trp Ser Asp Leu
625 630 635 640
Ala Ala Tyr Phe Asn Leu Asp Ile Glu Asn Ser Glu Glu Asn Ala Ser
645 650 655
Thr Leu Ser Leu Gln Phe Val Asp Ser Ala Ala Asp Met Pro Leu Ala
660 665 670
Lys Met His Arg Ala Phe Ser Ala Asn Val Val Ala Ser Lys Glu Leu
675 680 685
Gln Lys Pro Gly Ser Ala Arg Ser Thr Arg His Leu Glu Ile Glu Leu
690 695 700
Pro Lys Glu Ala Ser Tyr Gln Glu Gly Asp His Leu Gly Val Ile Pro
705 710 715 720
Arg Asn Tyr Glu Gly Ile Val Asn Arg Val Ala Thr Arg Phe Gly Leu
725 730 735
Asp Ala Ser Gln Gln Ile Arg Leu Glu Ala Glu Glu Glu Lys Leu Ala
740 745 750
His Leu Pro Leu Gly Lys Thr Val Ser Val Glu Glu Leu Leu Gln Tyr
755 760 765
Val Glu Leu Gln Asp Pro Val Thr Arg Thr Gln Leu Arg Ala Met Ala
770 775 780
Ala Lys Thr Val Cys Pro Pro His Lys Val Glu Leu Glu Val Leu Leu
785 790 795 800
Glu Lys Gln Ala Tyr Lys Glu Gln Val Leu Ala Lys Arg Leu Thr Met
805 810 815
Leu Glu Leu Leu Glu Lys Tyr Pro Ala Cys Glu Met Glu Phe Ser Glu
820 825 830
Phe Ile Ala Leu Leu Pro Ser Met Arg Pro Arg Tyr Tyr Ser Ile Ser
835 840 845
Ser Ser Pro Arg Val Asp Glu Lys Gln Ala Ser Ile Thr Val Ser Val
850 855 860
Val Ser Gly Glu Ala Trp Ser Gly Tyr Gly Glu Tyr Lys Gly Ile Ala
865 870 875 880
Ser Asn Tyr Leu Ala Asn Leu Gln Glu Gly Asp Thr Ile Thr Cys Phe
885 890 895
Val Ser Thr Pro Gln Ser Gly Phe Thr Leu Pro Lys Gly Pro Glu Thr
900 905 910
Pro Leu Ile Met Val Gly Pro Gly Thr Gly Val Ala Pro Phe Arg Gly
915 920 925
Phe Val Gln Ala Arg Lys Gln Leu Lys Glu Gln Gly Gln Ser Leu Gly
930 935 940
Glu Ala His Leu Tyr Phe Gly Cys Arg Ser Pro His Glu Asp Tyr Leu
945 950 955 960
Tyr Gln Lys Glu Leu Glu Asn Ala Gln Asn Glu Gly Ile Ile Thr Leu
965 970 975
His Thr Ala Phe Ser Arg Val Pro Asn Gln Pro Lys Thr Tyr Val Gln
980 985 990
His Val Met Glu Gln Asp Gly Lys Lys Leu Ile Glu Leu Leu Asp Gln
995 1000 1005
Gly Ala His Phe Tyr Ile Cys Gly Asp Gly Ser Gln Met Ala Pro
1010 1015 1020
Asp Val Glu Ala Thr Leu Met Lys Ser Tyr Ala Glu Val His Gln
1025 1030 1035
Val Ser Glu Ala Asp Ala Arg Leu Trp Leu Gln Gln Leu Glu Glu
1040 1045 1050
Lys Gly Arg Tyr Ala Lys Asp Val Trp Ala Gly
1055 1060
<210> 20
<211> 550
<212> PRT
<213> Artificial sequence
<400> 20
Met Ser Asp Thr Thr Thr Ala Phe Thr Val Pro Ala Val Ala Lys Ala
1 5 10 15
Val Ala Ala Ala Ile Pro Asp Arg Glu Leu Ile Ile Gln Gly Asp Arg
20 25 30
Arg Tyr Thr Tyr Arg Gln Val Ile Glu Arg Ser Asn Arg Leu Ala Ala
35 40 45
Tyr Leu His Ser Gln Gly Leu Gly Cys His Thr Glu Arg Glu Ala Leu
50 55 60
Ala Gly His Glu Val Gly Gln Asp Leu Leu Gly Leu Tyr Ala Tyr Asn
65 70 75 80
Gly Asn Glu Phe Val Glu Ala Leu Leu Gly Ala Phe Ala Ala Arg Val
85 90 95
Ala Pro Phe Asn Val Asn Phe Arg Tyr Val Lys Ser Glu Leu His Tyr
100 105 110
Leu Leu Ala Asp Ser Glu Ala Thr Ala Leu Ile Tyr His Ala Ala Phe
115 120 125
Ala Pro Arg Val Ala Glu Ile Leu Pro Glu Leu Pro Arg Leu Arg Val
130 135 140
Leu Ile Gln Ile Ala Asp Glu Ser Gly Asn Glu Leu Leu Asp Gly Ala
145 150 155 160
Val Asp Tyr Glu Asp Ala Leu Ala Ser Val Ser Ala Gln Pro Pro Pro
165 170 175
Val Arg His Cys Pro Asp Asp Leu Tyr Val Leu Tyr Thr Gly Gly Thr
180 185 190
Thr Gly Met Pro Lys Gly Val Leu Trp Arg Gln His Asp Ile Phe Met
195 200 205
Thr Ser Phe Gly Gly Arg Asn Leu Met Thr Gly Glu Pro Ser Ser Ser
210 215 220
Ile Asp Glu Ile Val Gln Arg Ala Ala Ser Gly Pro Gly Thr Lys Leu
225 230 235 240
Met Ile Leu Pro Pro Leu Ile His Gly Ala Ala Gln Trp Ser Val Met
245 250 255
Thr Ala Ile Thr Thr Gly Gln Thr Val Val Phe Pro Thr Val Val Asp
260 265 270
His Leu Asp Ala Glu Asp Val Val Arg Thr Ile Glu Arg Glu Lys Val
275 280 285
Met Val Val Thr Val Val Gly Asp Ala Met Ala Arg Pro Leu Val Ala
290 295 300
Ala Ile Glu Lys Gly Ile Ala Asp Val Ser Ser Leu Ala Val Val Ala
305 310 315 320
Asn Gly Gly Ala Leu Leu Thr Pro Phe Val Lys Gln Arg Leu Ile Glu
325 330 335
Val Leu Pro Asn Ala Val Val Val Asp Gly Val Gly Ser Ser Glu Thr
340 345 350
Gly Ala Gln Met His His Met Ser Thr Pro Gly Ala Val Ala Thr Gly
355 360 365
Thr Phe Asn Ala Gly Pro Asp Thr Phe Val Ala Ala Glu Asp Leu Ser
370 375 380
Ala Ile Leu Pro Pro Gly His Glu Gly Met Gly Trp Leu Ala Gln Arg
385 390 395 400
Gly Tyr Val Pro Leu Gly Tyr Lys Gly Asp Ala Ala Lys Thr Ala Lys
405 410 415
Thr Phe Pro Val Ile Asp Gly Val Arg Tyr Ala Val Pro Gly Asp Arg
420 425 430
Ala Arg His His Asp Ala Gly His Ile Glu Leu Leu Gly Arg Asp Ser
435 440 445
Val Cys Ile Asn Ser Gly Gly Glu Lys Ile Phe Val Glu Glu Val Glu
450 455 460
Thr Ala Ile Ala Ser His Pro Ala Val Ala Asp Val Val Val Ala Gly
465 470 475 480
Arg Pro Ser Glu Arg Trp Gly Gln Glu Val Val Ala Val Val Ala Leu
485 490 495
Ser Asp Gly Ala Ala Val Asp Ala Gly Glu Leu Ile Ala His Ala Ser
500 505 510
Asn Ser Leu Ala Arg Tyr Lys Leu Pro Lys Ala Ile Val Phe Arg Pro
515 520 525
Val Ile Glu Arg Ser Pro Ser Gly Lys Ala Asp Tyr Arg Trp Ala Arg
530 535 540
Glu Gln Ala Val Asn Gly
545 550
<210> 21
<211> 408
<212> PRT
<213> Artificial sequence
<400> 21
Asp Phe Ala Tyr Ser Pro Lys Val Gln Ala Leu Arg Glu Arg Val Thr
1 5 10 15
Ala Phe Met Asp Ala His Val Tyr Pro Ala Glu Ala Val Phe Glu Arg
20 25 30
Gln Val Ala Glu Gly Asp Arg Trp Gln Pro Thr Ala Ile Met Glu Glu
35 40 45
Leu Lys Ala Lys Ala Arg Ala Glu Gly Leu Trp Asn Leu Phe Leu Pro
50 55 60
Glu Ser Glu Tyr Gly Ala Gly Leu Ser Asn Leu Glu Tyr Ala Pro Leu
65 70 75 80
Ala Glu Ile Met Gly Arg Ser Leu Leu Gly Pro Glu Pro Phe Asn Cys
85 90 95
Ser Ala Pro Asp Thr Gly Asn Met Glu Val Leu Val Arg Tyr Gly Ser
100 105 110
Glu Ala Gln Lys Arg Gln Trp Leu Glu Pro Leu Leu Arg Gly Glu Ile
115 120 125
Arg Ser Ala Phe Ala Met Thr Glu Pro Asp Val Ala Ser Ser Asp Ala
130 135 140
Thr Asn Met Ala Ala Thr Ala Ile Arg Asp Gly Asp Gln Trp Val Ile
145 150 155 160
Asn Gly Arg Lys Trp Trp Thr Ser Gly Ala Cys Asp Pro Arg Cys Lys
165 170 175
Val Met Ile Phe Met Gly Leu Ser Asp Pro Glu Gly Pro Arg His Gln
180 185 190
Gln His Ser Met Val Leu Val Pro Thr Asp Thr Pro Gly Val Lys Ile
195 200 205
Val Arg Pro Leu Pro Val Phe Gly Tyr Asp Asp Ala Pro His Gly His
210 215 220
Ala Glu Val Leu Phe Glu Asn Val Arg Val Pro Tyr Glu Asn Val Ile
225 230 235 240
Leu Gly Glu Gly Arg Gly Phe Glu Ile Ala Gln Gly Arg Leu Gly Pro
245 250 255
Gly Arg Ile His His Cys Met Arg Ser Ile Gly Met Ala Glu Arg Ala
260 265 270
Leu Glu Leu Met Cys Lys Arg Ser Val Glu Arg Thr Ala Phe Gly Arg
275 280 285
Pro Leu Ala Arg Leu Gly Gly Asn Val Asp Lys Ile Ala Asp Ser Arg
290 295 300
Met Glu Ile Asp Met Ala Arg Leu Leu Thr Leu Lys Ala Ala Tyr Met
305 310 315 320
Met Asp Thr Val Gly Asn Lys Val Ala Arg Ser Glu Ile Ala Gln Ile
325 330 335
Lys Val Val Ala Pro Asn Val Ala Leu Asn Val Ile Asp Arg Ala Ile
340 345 350
Gln Ile His Gly Gly Ala Gly Val Ser Gly Asp Phe Pro Leu Ala Tyr
355 360 365
Met Tyr Ala Met Gln Arg Thr Leu Arg Leu Ala Asp Gly Pro Asp Glu
370 375 380
Val His Arg Ala Ala Ile Gly Lys Tyr Glu Ile Gly Lys Tyr Val Pro
385 390 395 400
Val Glu Met Leu Arg Ser Gly Arg
405
<210> 22
<211> 237
<212> PRT
<213> Artificial sequence
<400> 22
Met Ser Asp Ser Glu Val Asn Gln Glu Ala Lys Pro Glu Val Lys Pro
1 5 10 15
Glu Val Lys Pro Glu Thr His Ile Asn Leu Lys Val Ser Asp Gly Ser
20 25 30
Ser Glu Ile Phe Phe Lys Ile Lys Lys Thr Thr Pro Leu Arg Arg Leu
35 40 45
Met Glu Ala Phe Ala Lys Arg Gln Gly Lys Glu Met Asp Ser Leu Arg
50 55 60
Phe Leu Tyr Asp Gly Ile Arg Ile Gln Ala Asp Gln Thr Pro Glu Asp
65 70 75 80
Leu Asp Met Glu Asp Asn Asp Ile Ile Glu Ala His Arg Glu Gln Ile
85 90 95
Gly Gly Ser Gly Ser Met Ile Trp Gln Arg Thr Ala Thr Leu Asp Ala
100 105 110
Leu Asn Ala Met Gly Ala Asn Asn Met Val Gly Leu Leu Asp Ile Arg
115 120 125
Phe Thr Arg Leu Asp Asp Asn Glu Ile Glu Ala Thr Met Pro Val Asp
130 135 140
His Arg Thr His Gln Pro Phe Gly Leu Leu His Gly Gly Ala Ser Val
145 150 155 160
Val Leu Ala Glu Thr Leu Gly Ser Val Ala Gly Tyr Leu Cys Thr Glu
165 170 175
Gly Glu Gln Asn Ile Val Gly Leu Glu Val Asn Ala Asn His Leu Arg
180 185 190
Ser Val Arg Ser Gly Arg Val Arg Gly Val Cys Arg Ala Val His Val
195 200 205
Gly Arg Arg His Gln Val Trp Gln Ile Glu Ile Phe Asp Glu Gln Asp
210 215 220
Arg Leu Cys Cys Ser Ser Arg Leu Thr Thr Ala Val Val
225 230 235
<210> 23
<211> 1410
<212> DNA
<213> Artificial sequence
<400> 23
atgccgacgt taccacgtac ctttgatgac attcagtctc gcttaatcaa tgctacaagt 60
cgtgtggttc caatgcagcg tcagattcag ggtctgaaat ttctgatgag tgccaaacgc 120
aaaacctttg gtccacgtcg cccaatgccg gaatttgtgg aaacacctat cccggatgtt 180
aatacattag ccttagagga cattgatgtg agtaatccgt ttctgtatcg ccagggccag 240
tggcgcgcat attttaaacg cttacgcgat gaagctccag ttcattatca gaaaaatagc 300
ccatttggtc cgttttggag cgtgacccgc tttgaggaca ttctgtttgt ggataaatca 360
catgatctgt ttagcgccga accacagatc atcttaggtg atcctccgga aggcctgtca 420
gtggaaatgt ttattgcgat ggaccctcct aaacatgatg tgcagcgctc tagtgttcag 480
ggtgtggttg cccctaaaaa tctgaaagaa atggaaggcc tgattcgtag tcgtacgggc 540
gatgtgttag attcattacc gacggataaa ccgtttaatt gggttcctgc ggtgagcaaa 600
gaactgacgg gtagaatgct ggctacctta ctggattttc cgtatgaaga acgtcataaa 660
ctggttgaat ggagcgatcg cttggccggt gcggcaagtg ctacgggcgg cgaatttgcg 720
gatgaaaatg ctatgtttga tgatgcggca gatatggcac gctctttttc tcgcctgtgg 780
cgcgataaag aagcccgccg tgcagcaggc gaagaaccgg gctttgattt aatctcactg 840
ctacagtcta ataaagaaac caaggatctg atcaatcgtc ctatggaatt tattggcaat 900
ctgaccctgc tgattgtggg cggtaatgat acgacccgca atagcatgtc aggcggctta 960
gttgccatga atgaatttcc tcgtgaattt gaaaaactga aagccaaacc ggaactgatt 1020
ccgaatatgg tgagcgaaat tattcgttgg cagacaccac tggcctatat gcgccgcatt 1080
gccaaacagg atgttgaact gggcggtcag accatcaaaa aaggtgatcg cgttgttatg 1140
tggtatgcct caggtaatcg cgatgaacgt aaatttgata atccggatca gtttattatc 1200
gatcgtaaag atgcacgcaa tcacatgtct tttggctatg gtgttcatcg ctgtatgggt 1260
aatcgtctgg ccgaattaca gctgcgtatt ctgtgggaag aaatcttaaa acgctttgat 1320
aatatcgaag ttgtggaaga accagaacgt gtgcagagca attttgttcg cggctatagc 1380
cgcttaatgg ttaaactgac acctaatagt 1410
<210> 24
<211> 470
<212> PRT
<213> Artificial sequence
<400> 24
Met Pro Thr Leu Pro Arg Thr Phe Asp Asp Ile Gln Ser Arg Leu Ile
1 5 10 15
Asn Ala Thr Ser Arg Val Val Pro Met Gln Arg Gln Ile Gln Gly Leu
20 25 30
Lys Phe Leu Met Ser Ala Lys Arg Lys Thr Phe Gly Pro Arg Arg Pro
35 40 45
Met Pro Glu Phe Val Glu Thr Pro Ile Pro Asp Val Asn Thr Leu Ala
50 55 60
Leu Glu Asp Ile Asp Val Ser Asn Pro Phe Leu Tyr Arg Gln Gly Gln
65 70 75 80
Trp Arg Ala Tyr Phe Lys Arg Leu Arg Asp Glu Ala Pro Val His Tyr
85 90 95
Gln Lys Asn Ser Pro Phe Gly Pro Phe Trp Ser Val Thr Arg Phe Glu
100 105 110
Asp Ile Leu Phe Val Asp Lys Ser His Asp Leu Phe Ser Ala Glu Pro
115 120 125
Gln Ile Ile Leu Gly Asp Pro Pro Glu Gly Leu Ser Val Glu Met Phe
130 135 140
Ile Ala Met Asp Pro Pro Lys His Asp Val Gln Arg Ser Ser Val Gln
145 150 155 160
Gly Val Val Ala Pro Lys Asn Leu Lys Glu Met Glu Gly Leu Ile Arg
165 170 175
Ser Arg Thr Gly Asp Val Leu Asp Ser Leu Pro Thr Asp Lys Pro Phe
180 185 190
Asn Trp Val Pro Ala Val Ser Lys Glu Leu Thr Gly Arg Met Leu Ala
195 200 205
Thr Leu Leu Asp Phe Pro Tyr Glu Glu Arg His Lys Leu Val Glu Trp
210 215 220
Ser Asp Arg Leu Ala Gly Ala Ala Ser Ala Thr Gly Gly Glu Phe Ala
225 230 235 240
Asp Glu Asn Ala Met Phe Asp Asp Ala Ala Asp Met Ala Arg Ser Phe
245 250 255
Ser Arg Leu Trp Arg Asp Lys Glu Ala Arg Arg Ala Ala Gly Glu Glu
260 265 270
Pro Gly Phe Asp Leu Ile Ser Leu Leu Gln Ser Asn Lys Glu Thr Lys
275 280 285
Asp Leu Ile Asn Arg Pro Met Glu Phe Ile Gly Asn Leu Thr Leu Leu
290 295 300
Ile Val Gly Gly Asn Asp Thr Thr Arg Asn Ser Met Ser Gly Gly Leu
305 310 315 320
Val Ala Met Asn Glu Phe Pro Arg Glu Phe Glu Lys Leu Lys Ala Lys
325 330 335
Pro Glu Leu Ile Pro Asn Met Val Ser Glu Ile Ile Arg Trp Gln Thr
340 345 350
Pro Leu Ala Tyr Met Arg Arg Ile Ala Lys Gln Asp Val Glu Leu Gly
355 360 365
Gly Gln Thr Ile Lys Lys Gly Asp Arg Val Val Met Trp Tyr Ala Ser
370 375 380
Gly Asn Arg Asp Glu Arg Lys Phe Asp Asn Pro Asp Gln Phe Ile Ile
385 390 395 400
Asp Arg Lys Asp Ala Arg Asn His Met Ser Phe Gly Tyr Gly Val His
405 410 415
Arg Cys Met Gly Asn Arg Leu Ala Glu Leu Gln Leu Arg Ile Leu Trp
420 425 430
Glu Glu Ile Leu Lys Arg Phe Asp Asn Ile Glu Val Val Glu Glu Pro
435 440 445
Glu Arg Val Gln Ser Asn Phe Val Arg Gly Tyr Ser Arg Leu Met Val
450 455 460
Lys Leu Thr Pro Asn Ser
465 470
<210> 25
<211> 45
<212> DNA
<213> Artificial sequence
<400> 25
tcgagctccg tcgacaagct tatggaaatg acatcagcgt ttacc 45
<210> 26
<211> 38
<212> DNA
<213> Artificial sequence
<400> 26
gtccacggag aattcatctc taatgctgtg ctgacgcc 38
<210> 27
<211> 22
<212> DNA
<213> Artificial sequence
<400> 27
ctgtactgga agccgcttat gg 22
<210> 28
<211> 44
<212> DNA
<213> Artificial sequence
<400> 28
gtggtggtgg tggtgctcga gttattgcag gtcagttgca gttg 44
<210> 29
<211> 25
<212> DNA
<213> Artificial sequence
<400> 29
gagatgaatt ctccgtggac ctgca 25
<210> 30
<211> 39
<212> DNA
<213> Artificial sequence
<400> 30
ataagcggct tccagtacag ggtaccgagc tcggatccg 39
<210> 31
<211> 24
<212> DNA
<213> Artificial sequence
<400> 31
atggaaatga catcagcgtt tacc 24
<210> 32
<211> 23
<212> DNA
<213> Artificial sequence
<400> 32
ttattgcagg tcagttgcag ttg 23

Claims (10)

1. Escherichia coli gene deletion bacteria BL21 delta FadB, R and J are obtained by knocking out FadB genes, FadR genes and FadJ genes from Escherichia coli BL 21.
2. The use of the escherichia coli gene deletion bacterium BL21 Δ FadB, R and J as defined in claim 1 in the preparation of 10-hydroxy-2-decenoic acid.
3. The method for constructing escherichia coli gene-deleted bacteria BL21 delta FadB, R and J as claimed in claim 1, comprising the following steps:
knocking out genes by using an RED recombination method, and constructing a gene deletion delta FadRB strain;
II, knocking out genes by using an RED recombination method, and constructing escherichia coli gene deletion bacteria BL21 delta FadB, R and J, wherein the construction specifically comprises constructing a FadJ knock-out frame; and (3) transforming the FadJ knockout frame into pkd 46-delta FadR delta FadB competent cells to prepare escherichia coli gene deletion bacteria BL21 delta FadB, R and J.
4. The method of claim 3, wherein the step ii of constructing the FadR knockout box comprises the steps of:
taking a genome of escherichia coli BL21 as a template, amplifying an upstream homologous arm FadJ1 of the 3-hydroxyacyl-CoA dehydrogenase gene, wherein the nucleotide sequence of an upstream primer is shown as SEQ ID No.25, and the nucleotide sequence of a downstream primer is shown as SEQ ID No. 26; taking a genome of escherichia coli BL21 as a template, amplifying a downstream homologous arm FadJ2 of the 3-hydroxyacyl-CoA dehydrogenase gene, wherein the nucleotide sequence of an upstream primer is shown as SEQ ID No.27, and the nucleotide sequence of a downstream primer is shown as SEQ ID No. 28; taking pkd3 plasmid as a template, amplifying an FRT-RKan-FRT gene fragment, wherein the nucleotide sequence of an upstream primer is shown as SEQ ID NO.29, and the nucleotide sequence of a downstream primer is shown as SEQ ID NO. 30; then, carrying out multi-fragment seamless cloning on FadJl, FRT-RKan-FRT and FadJ2 gene fragments, amplifying a knockout frame fragment of FadJ1-Kan-FadJ2, wherein the nucleotide sequence of an upstream primer is shown as SEQ ID No.31, the nucleotide sequence of a downstream primer is shown as SEQ ID No.32, and recovering purified glue to obtain a FadJ knockout frame;
preferably, the PCR amplification system is as follows, and the total system is 50 μ L:
mu.L 100. mu.M forward primer 2.0. mu.L, mu.L 100. mu.M reverse primer 2.0. mu.L, template 2.0. mu.L, 5U/. mu.L phanta enzyme 25. mu.L, ddH 2 O19μL;
The PCR amplification conditions were as follows:
pre-denaturation at 95 ℃ for 3 min; denaturation at 95 deg.C for 15s, annealing at 60 deg.C for 15s, extension at 72 deg.C for 1min for 15s, and circulating for 30 times; extension at 72 ℃ for 5 min.
5. The construction method as claimed in claim 3, wherein the FadJ knockout frame is transformed into pkd46- Δ FadR Δ FadB recombinant bacteria in the step II, and finally the Escherichia coli gene deletion bacteria BL21 Δ FadB, R and J are obtained, comprising the following steps:
a. transforming the plasmid pkd46 into a delta FadR delta FadB competent cell to obtain a pkd 46-delta FadR delta FadB recombinant strain, preparing a pkd 46-delta FadR delta FadB competent cell, and preserving the prepared pkd 46-delta FadR delta FadB competent cell by using glycerol with the mass concentration of 10%;
b. the FadJ knockout frame Jk is transformed into pkd 46-delta FadR delta FadB competent cells, after the confirmation of the knockout frame transfer of the pkd46-Jk-BL21 recombinant bacteria is verified, pkd46 is eliminated at 42 ℃, and the Jk-delta FadR delta FadB recombinant bacteria are obtained after screening;
c. preparing a competent transformation pcp20 plasmid from the Jk-delta FadR delta FadB recombinant strain, eliminating Jk resistance and the pcp20 plasmid at 42 ℃ to obtain a delta FadRBJ recombinant strain, namely escherichia coli gene deletion strain BL21 delta FadB, R and J.
6. An engineering bacterium of Escherichia coli BL21 delta FadB, R, J, pCDFDuet-1-MaMACS-PpFadE and pET28a-SUMO-ctYdii is constructed by transforming recombinant plasmids pCDFDuet-1-MaMACS-PpFadE and pET28a-SUMO-ctYdii into the Escherichia coli gene deletion bacterium BL21 delta FadB, R and J in claim 1;
the nucleotide sequence of the fatty acyl CoA synthetase gene MaMACS is shown as SEQ ID NO. 15; the nucleotide sequence of the fatty acyl CoA dehydrogenase gene PpFadE is shown as SEQ ID NO. 16; the nucleotide sequence of the ester acyl-CoA thioesterase gene ctYdii is shown in SEQ ID NO. 17.
7. The engineered Escherichia coli BL21 Δ FadB, R, J, pCDFDuet-1-MaMACS-PpFadE, pET28a-SUMO-ctYdii of claim 6, wherein the recombinant plasmid pCDFDuet-1-MaMACS-PpFadE is constructed, comprising the steps of:
using Escherichia coli DH5a genome as a template, amplifying fatty acyl CoA dehydrogenase gene PpFadE, wherein the nucleotide sequence of an upstream primer is shown as SEQ ID NO.9, the nucleotide sequence of a downstream primer is shown as SEQ ID NO.10, then carrying out double enzyme digestion on pCDFDuet-1-MaMACS plasmid by Nde I and Ava I, and connecting by ligase to prepare a recombinant plasmid pCDFDuet-1-MaMACS-PpFadE;
the PCR amplification system was as follows, 25. mu.L total:
mu.L 100. mu.M forward primer 1.0. mu.L, mu.L 100. mu.M reverse primer 1.0. mu.L, template 1.0. mu.L, 5U/. mu.L phanta enzyme 12.5. mu.L, ddH 2 O 9.5μL;
The PCR amplification conditions were as follows:
pre-denaturation at 95 ℃ for 3 min; denaturation at 95 ℃ for 15S, annealing at 60 ℃ for 15S, extension at 72 ℃ for 40S, and circulation for 30 times; extending for 5min at 72 ℃;
preferably, the recombinant plasmid pET28a-SUMO-ctYdii is constructed by the following steps:
using a genome of escherichia coli DH5a as a template, amplifying an ester acyl coenzyme A thioesterase gene ctyydiI, wherein the nucleotide sequence of an upstream primer is shown as SEQ ID NO.11, the nucleotide sequence of a downstream primer is shown as SEQ ID NO.12, then performing double enzyme digestion on pET28a-SUMO plasmid and an ester acyl coenzyme A thioesterase gene ctyydiI respectively by BamHI and Xho I, and performing ligase ligation to prepare a recombinant plasmid pET28 a-SUMO-ctydiI;
the PCR amplification system was as follows, 25. mu.L total:
mu.L 100. mu.M forward primer 1.0. mu.L, mu.L 100. mu.M reverse primer 1.0. mu.L, template 1.0. mu.L, 5U/. mu.L phanta enzyme 12.5. mu.L, ddH 2 O 9.5μL;
The PCR amplification conditions were as follows:
pre-denaturation at 95 ℃ for 3 min; denaturation at 95 ℃ for 15s, annealing at 60 ℃ for 15s, extension at 72 ℃ for 15s, and circulation for 30 times; extension at 72 ℃ for 5 min.
8. A method for preparing trans-2-decenoic acid by using decanoic acid as a raw material comprises the following steps:
(1) the engineering bacteria of Escherichia coli BL21 delta FadB, R, J, pCDFDuet-1-MaMACS-PpFadE, pET28a-SUMO-ctYdii of claim 6, which are screened, induced and cultured to obtain induced cells;
(2) culturing the induced cells prepared in the step (1) by a transformation culture medium to prepare resting cells, and then adding capric acid into the resting cells of escherichia coli BL21 delta FadB, R, J, pCDFDuet-1-MaMACS-PpFadE, pET28a-SUMO-ctYdii to culture to prepare trans-2-decenoic acid.
9. The method according to claim 8, wherein in the step (1), the engineering bacteria of Escherichia coli BL21 Δ FadB, R, J, pCDFDuet-1-MaMACS-PpFadE, pET28a-SUMO-ctYdii are inoculated into LB liquid medium containing 50 μ g/mL kanamycin, 100 μ g/mL ampicillin and 40 μ g/mL streptomycin at corresponding concentrations, and screened and cultured at 35-40 ℃ with shaking until OD is reached 600 0.8 to 1.2;
preferably, in the step (1), after the bacteria solution after the screening culture is cooled to 18-20 ℃ and adapted for 0.5-1 hour, IPTG is added to the concentration of 0.5-0.8 mM, oleic acid is added to the concentration of 0.4-0.8% by mass, tween 80 is added to the concentration of 0.2-0.5% by mass, the induction culture is continued for 18-20 hours, and cells are separated to prepare induced cells;
preferably, in the step (1), the inducing culture conditions are that after the bacterial liquid of the screening culture is cooled to 20 ℃ to adapt for 1 hour, IPTG is respectively added to ensure that the concentration of IPTG in the culture medium is 0.5mM, oleic acid is added to ensure that the concentration of Tween in the culture medium is 0.6 percent, Tween 80 is added to ensure that the concentration of Tween in the culture medium is 0.3 percent, the inducing culture is continued for 18 hours, and cells are separated to prepare the inducing cells;
preferably, in the step (1), the cells are separated by centrifuging at 5000rpm for 15min, collecting the precipitate, and then washing with 0.85% by mass of saline.
10. The method of claim 8, wherein the transformation medium components in step (2) comprise the following:
0.8-1.2% of glycerol by mass fraction, 0.3-0.5% of glucose by mass fraction, 40-60 μ g/mL of kanamycin antibiotic, 90-110 μ g/mL of ampicillin, 30-50 μ g/mL of streptomycin antibiotic, and the balance of a 100mM potassium phosphate buffer solution with pH7.4 as a solvent;
preferably, glycerol is 1% by mass, glucose is 0.4% by mass, kanamycin antibiotic is 50. mu.g/mL, ampicillin is 100. mu.g/mL, streptomycin antibiotic is 40. mu.g/mL, and the balance is 100mM potassium phosphate buffer, pH 7.4;
preferably, capric acid is added into the resting cells in the step (2) to the concentration of 0.3-0.7g/L, and the reaction is carried out for 7-10h at the temperature of 28-37 ℃ to prepare trans-2-decenoic acid;
preferably, in the step (2), the concentration of converted decanoic acid is 0.5 g/L;
preferably, capric acid is added into the resting cells in the step (2) until the concentration is 0.5g/L, and the reaction is carried out for 9h at the temperature of 30 ℃ to prepare trans-2-decenoic acid;
preferably, in the step (2), the transformation culture condition is culture at 29-31 ℃ for 8 hours;
preferably, in the step (2), the decanoic acid is dissolved in dimethyl sulfoxide.
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