CN114862778B - Digital soil morphology measurement method based on ImagePy - Google Patents

Digital soil morphology measurement method based on ImagePy Download PDF

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CN114862778B
CN114862778B CN202210439257.1A CN202210439257A CN114862778B CN 114862778 B CN114862778 B CN 114862778B CN 202210439257 A CN202210439257 A CN 202210439257A CN 114862778 B CN114862778 B CN 114862778B
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image
gravel
soil
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imagepy
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CN114862778A (en
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张志华
苏智冉
石岳峰
叶优良
桑玉强
毕舒雯
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Henan Agricultural University
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    • GPHYSICS
    • G06COMPUTING; CALCULATING OR COUNTING
    • G06TIMAGE DATA PROCESSING OR GENERATION, IN GENERAL
    • G06T7/00Image analysis
    • G06T7/0002Inspection of images, e.g. flaw detection
    • GPHYSICS
    • G06COMPUTING; CALCULATING OR COUNTING
    • G06TIMAGE DATA PROCESSING OR GENERATION, IN GENERAL
    • G06T5/00Image enhancement or restoration
    • G06T5/20Image enhancement or restoration using local operators
    • GPHYSICS
    • G06COMPUTING; CALCULATING OR COUNTING
    • G06TIMAGE DATA PROCESSING OR GENERATION, IN GENERAL
    • G06T5/00Image enhancement or restoration
    • G06T5/50Image enhancement or restoration using two or more images, e.g. averaging or subtraction
    • GPHYSICS
    • G06COMPUTING; CALCULATING OR COUNTING
    • G06TIMAGE DATA PROCESSING OR GENERATION, IN GENERAL
    • G06T5/00Image enhancement or restoration
    • G06T5/70Denoising; Smoothing
    • GPHYSICS
    • G06COMPUTING; CALCULATING OR COUNTING
    • G06TIMAGE DATA PROCESSING OR GENERATION, IN GENERAL
    • G06T7/00Image analysis
    • G06T7/10Segmentation; Edge detection
    • G06T7/11Region-based segmentation
    • GPHYSICS
    • G06COMPUTING; CALCULATING OR COUNTING
    • G06TIMAGE DATA PROCESSING OR GENERATION, IN GENERAL
    • G06T7/00Image analysis
    • G06T7/60Analysis of geometric attributes
    • G06T7/62Analysis of geometric attributes of area, perimeter, diameter or volume
    • GPHYSICS
    • G06COMPUTING; CALCULATING OR COUNTING
    • G06TIMAGE DATA PROCESSING OR GENERATION, IN GENERAL
    • G06T7/00Image analysis
    • G06T7/90Determination of colour characteristics
    • GPHYSICS
    • G06COMPUTING; CALCULATING OR COUNTING
    • G06TIMAGE DATA PROCESSING OR GENERATION, IN GENERAL
    • G06T2207/00Indexing scheme for image analysis or image enhancement
    • G06T2207/10Image acquisition modality
    • G06T2207/10024Color image
    • GPHYSICS
    • G06COMPUTING; CALCULATING OR COUNTING
    • G06TIMAGE DATA PROCESSING OR GENERATION, IN GENERAL
    • G06T2207/00Indexing scheme for image analysis or image enhancement
    • G06T2207/20Special algorithmic details
    • G06T2207/20112Image segmentation details
    • G06T2207/20132Image cropping
    • GPHYSICS
    • G06COMPUTING; CALCULATING OR COUNTING
    • G06TIMAGE DATA PROCESSING OR GENERATION, IN GENERAL
    • G06T2207/00Indexing scheme for image analysis or image enhancement
    • G06T2207/20Special algorithmic details
    • G06T2207/20212Image combination
    • G06T2207/20221Image fusion; Image merging
    • YGENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y02TECHNOLOGIES OR APPLICATIONS FOR MITIGATION OR ADAPTATION AGAINST CLIMATE CHANGE
    • Y02ATECHNOLOGIES FOR ADAPTATION TO CLIMATE CHANGE
    • Y02A90/00Technologies having an indirect contribution to adaptation to climate change
    • Y02A90/30Assessment of water resources

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Abstract

The invention discloses a digital soil morphology measurement method based on ImagePy, which aims to solve the technical problems that the RGB color space is insufficient in image processing and the method for measuring the gravel content in the prior art has limitation. The method comprises the following steps: soil profile acquisition, image acquisition, scale setting and ROI selection, HSV color model conversion, image segmentation, noise reduction, image fusion, image screening, image re-segmentation and gravel volume quantification are obtained. The invention provides a new scheme for the determination of the gravel content, namely digital quantification, and has the advantages of high accuracy of the determined gravel content, accurate result, high feasibility, low labor cost and material cost in use and high determination efficiency of the gravel content.

Description

Digital soil morphology measurement method based on ImagePy
Technical Field
The invention relates to the technical field of digital soil, in particular to a digital soil morphology measurement method based on ImagePy.
Background
The gravel in the soil is defined differently in different classification systems according to its size and shape, and mineral particles which are not less than 2mm in diameter, relatively independent and not easily broken are generally considered as the gravel, and the soil containing the gravel is called as the stony soil. The characteristics of the gravel, such as the content, the size, the spatial distribution and the like, play an important role in the hydrologic and carbon circulation process of the soil, but the method for measuring the gravel content in the prior art has limitations. Wherein:
(1) Ring cutter sampling method: for larger-sized gravels, the volume of the pit needs to be increased, and the actual operation is time-consuming and labor-consuming and has high labor intensity.
(2) The Viro drill rod inserting method: only at a gravel content of < 50% has a certain accuracy, and the measurement result is poor in accuracy when the gravel content is > 50%.
(3) Gamma ray method: correction is performed before use, but correction is difficult in places with large space variation of gravel size and content, radioactive elements are harmful to human bodies, equipment is heavy, and the correction is inconvenient to apply in places far away from roads.
(4) Resistivity tomography: the variability of the water content in the field can cause the resistivity values of fine soil and gravel to fluctuate within a certain range, thereby affecting the accuracy of the final gravel content estimation, so that the method can estimate the gravel content in the soil within a range of errors and needs further research.
(5) Ground Penetrating Radar (GPR): when measuring the gravel content of a stone soil using GPR, the reflection of electromagnetic waves by deeper rock is masked by the reflection of upper rock, so that the resulting image cannot reflect the reality of the inside of the stone soil. When the gravel content is higher, the reflection waveform is disordered due to the more reflection interfaces, so that the stone soil is not an ideal detection environment of the GPR. In addition, although the use of various commercial software can obtain GPR scan images with high accuracy, whether the accuracy thereof satisfies the discrimination between gravel and fine earth has not been effectively verified.
In image processing, the most commonly used color space is an RGB model, which is commonly used for color display and image processing, and in the form of a model of three-dimensional coordinates, RGB is the color space that we touch most, and an image is represented by three channels, red (R), green (G) and blue (B), respectively. Different combinations of these three colors may form almost all other colors.
The RGB color space is the most basic, most commonly used, hardware-oriented color space in image processing. The RGB color space uses a linear combination of three color components to represent the color, any color being related to the three components, and the three components being highly correlated, so that it is not intuitive when continuously transforming the colors, and changes are required to adjust the color of the image. The images acquired in the natural environment are easily affected by natural illumination, shielding, shadow and the like, namely are sensitive to brightness. While the three components of the RGB color space are all closely related to luminance, i.e. as soon as the luminance changes, the three components will change accordingly, without being expressed in a more intuitive way. However, the sensitivity of the human eye to these three color components is different, and in a single color, the human eye is least sensitive to red and most sensitive to blue, so that the RGB color space is a color space with poor uniformity. If the similarity of colors is measured directly by Euclidean distance, the result will deviate greatly from human vision. For a certain color, it is difficult to infer more accurate three component values to represent.
Disclosure of Invention
The invention aims to provide a digital soil morphology measurement method based on ImagePy, which aims to solve the technical problems that the method for measuring the gravel content in the prior art has limitations and the RGB color space has defects in image processing.
In order to solve the technical problems, the invention adopts the following technical scheme:
the digital soil morphology measurement method based on the ImagePy comprises the following steps:
(1) Acquiring a soil profile: digging a soil section in a given area, cutting off exposed root systems, cleaning a smooth section, and adding a scale on a vertical section;
(2) Image acquisition: under the condition of sufficient light, shooting a plurality of soil profile images;
(3) Setting a scale and selecting an ROI: introducing the image obtained in the step (2) into image processing software, correcting a lens, eliminating chromatic aberration, adjusting image exposure, improving image quality, storing and exporting, introducing the exported image into an ImagePy, calling a measuring tool, setting a scale, and cutting out an ROI;
(4) HSV color model conversion: converting the ROI from an RGB color model to an HSV color model;
(5) Image segmentation: separating small-grain size, large-grain size and medium-grain size gravels from other substances in an image in H, S, V channels respectively, wherein the hue is adjusted in H channels, the saturation is adjusted in S channels and the brightness is adjusted in V channels;
(6) Noise reduction: carrying out fuzzy processing on the image by using a Gaussian filter, and enhancing the contrast between a small particle target and the large particle gravel in the S channel by using a maximum filter;
(7) And (3) image fusion: fusing the small-grain size, large-grain size and medium-grain size stone images in the H, S, V channel;
(8) Image screening: eliminating roots, macropores and other non-gravel objects in the <2 mm-sized portion of the image using a geometric filtering algorithm;
(9) Image repartitioning: performing image segmentation again by using a UDW algorithm, and storing and exporting;
(10) Quantification of gravel volume: the gravel volume percentage is calculated from the percentage of open-ended projected area observed in the soil profile.
Preferably, in the step (1), the soil is rectangular in cross section and has a size of 1m×0.5m.
Preferably, in step (2), the number of uses isThe code single phase inverter shoots a plurality of 0.5m 2 A soil profile image of 6000 x 4000 pixels in range, the focal length of the image being 22mm and the camera lens being 1m from the soil profile.
Preferably, in step (3), the image processing software is Adobe Photoshop 2021, and uses a configuration file in the software to correct a lens, eliminate chromatic aberration, adjust image exposure, improve image quality, and save and export as a tiff format image.
Preferably, in step (3), the measuring tool is called through measurement→distance, the Scale is set through image→scale And Unit, the ROI is cut out by using a rectangular tool, and the selected size of the ROI is 0.5×0.5m.
Preferably, in step (4), the Color model conversion is performed using a Color conversion module image→color→rgb To HSV encapsulated in ImagePy.
Preferably, in step (6), the Gaussian filter is called by process→filters→Gaussian, and the Maximum filter is called by process→filters→maximum.
Preferably, in the step (7), image fusion is performed by a process→image Calculator; in step (8), the Minimum filter is invoked by process→filters→minimum.
Preferably, in step (9), the image is divided from process→hydrology→ Up And Down Watershed, and stored and exported in tiff format.
Preferably, in step (10), the percentage of gravel volume is calculated from the percentage of white areas in the soil profile binary image: rp=ra/ta×100; where RP represents the percentage by gravel volume, RA represents the projected area of the gravel, and TA represents the total projected area of the soil profile image.
Compared with the prior art, the invention has the beneficial technical effects that:
1. the invention converts two-dimensional image data of the gravel into three-dimensional data based on the ImagePy, omits sampling cost and high CT scanning cost, provides a new scheme (namely digital quantization) for measuring the content of the gravel, adopts a new algorithm, a calculation step, a measurement method and measurement parameters, and has the advantages of high accuracy of the measured content of the gravel, accurate result, high feasibility, low labor cost and material cost in use and high (instantaneity) measuring efficiency for the content of the gravel.
2. The UDW algorithm adopted by the invention is a combination of a Sobel filter and a region growing watershed algorithm for pixel segmentation. The Sobel filter is an edge detection tool that can extract the maximum derivative of the image intensity value, enhance the difference between the gravel and the soil matrix, and detect the boundary between the soil matrix and the gravel. The region growing watershed algorithm is a hybrid segmentation method that combines edge-based and region-based methods to obtain better segmentation results. The algorithm merges pixels with more similar properties with adjacent homogenous pixels until a boundary between gravel and soil matrix is identified, thereby effectively avoiding over-segmentation outside the boundary.
3. The invention applies HSV color space to the field of digital soil morphology measurement based on ImagePy, can intuitively express the tone, vividness and brightness of the color, and is convenient for color comparison. When the HSV is used for dividing the appointed color, the HSV has a larger effect, and under the HSV color space, an object with a certain color is easier to track than RGB, and the HSV is more suitable for dividing the object with the appointed color.
Drawings
FIG. 1 is a schematic representation of a cross-sectional image of soil in accordance with the present invention.
Fig. 2 is a schematic view of the soil profile image ROI cut out in the present invention.
Fig. 3 is a schematic diagram of an H-channel in image segmentation according to the present invention.
Fig. 4 is a schematic diagram of an S channel in image segmentation according to the present invention.
Fig. 5 is a schematic view of V-channels in image segmentation according to the present invention.
FIG. 6 is a binary image of a soil profile of the present invention containing only gravel.
Detailed Description
The following examples are given to illustrate the invention in detail, but are not intended to limit the scope of the invention in any way.
Example 1:
an ImagePy-based digital soil morphology measurement method, see fig. 1-6, includes the steps of:
(1) Acquiring a soil profile: after the original soil column is collected, a rectangular soil section of 1m multiplied by 0.5m is excavated in situ, exposed root systems are cut off by scissors, smooth sections are cleaned by using brushes and cutters, and a scale is added on the vertical sections so as to calibrate and measure the gravel size in the later period.
(2) Image acquisition: under the condition of sufficient light, a digital single-lens reflex camera (Sony ILCE-6000) is used for shooting a plurality of 0.5m sheets 2 A soil profile image of 6000 x 4000 pixels in range, see fig. 1. The focal length of the image is 22mm, the camera lens is 1m away from the soil section, and the image pixels and focal lengths of the soil section are different due to different shooting devices.
(3) Setting a scale and selecting an ROI: the image is imported into Adobe Photoshop 2021, the configuration file in the software is utilized to correct the lens, eliminate chromatic aberration and adjust image exposure to improve image quality, and the image is saved and exported into tiff format. The tiff Image was imported into ImagePy, and the Scale was measured And set using the measure→distance And image→scale And Unit tool. The soil profile image was then cropped to a ROI of 0.5 x 0.5m (2273 x 2273 pixels) using a rectangular tool, see fig. 2, with an image resolution of 2.2pixels/mm, screening for gravel >2mm in diameter with a resolution of > 4.4 pixels.
(4) HSV color model conversion: the ROI was converted from RGB Color model To HSV Color model using Color conversion module image→color→rgb To HSV encapsulated in ImagePy.
(5) Image segmentation: the image is divided into hue (H), saturation (S) and brightness (V) channels. The small-particle size, large-particle size, and medium-particle size gravels are separated from other substances in the image in H, S, V channels, respectively, wherein the hue is adjusted in H channels, the saturation is adjusted in S channels, and the brightness is adjusted in V channels.
H represents color information, i.e. the location of the spectral color that it is in, and small particle size gravel can be segmented in the H-channel. S is expressed as the ratio between the purity of the selected color and the maximum purity of that color, with s=0, ranging from 0 to 1, only gray scale. Since saturation is less affected by shadows or other brightness factors and there is a large contrast between shadows and the soil matrix, large-particle-size gravel with a large contrast can be segmented in the S-channel. V represents the brightness of the color, ranging from 0 to 1, with a little attention paid: there was no direct link between it and light intensity, and medium size gravel was split in V-channels after shadow removal by Image Calculator in ImagePy in experiments.
(6) Noise reduction: in order to prevent over-segmentation, a Gaussian filter is called by a Process- & gt Filters- & gt Gaussian, and details such as noise are reduced by blurring the image by using the Gaussian filter, so that segmentation accuracy is improved. The contrast between the small particle target and the large particle gravel in the S-channel is enhanced by invoking the Maximum filter through the Process → Filters → Maximum.
(7) And (3) image fusion: the small, large, medium particle size gravel images in the H, S, V channel were fused using an Image Calculator processor→image Calculator.
(8) Image screening: root, macropores, and other non-gravel objects in the <2mm sized portion of the image are eliminated using a geometric filtering algorithm by process→filters→minimum call Minimum Filters.
(9) Image repartitioning: image segmentation is performed through process→hydrology→ Up And Down Watershed, and the UDW algorithm packaged in imagePy is used for segmentation, storage and export into tiff format again.
The UDW algorithm consists of a Sobel filter and a region growing watershed algorithm. Sobel filters are commonly used to extract the horizontal (horizontal features) and vertical (vertical features) edges of gray scale images, which can increase the difference between gravel and other soil substrates and detect their boundaries. The regional growth watershed algorithm is integrated with a mixed segmentation method based on edges and regions, so that excessive segmentation of boundaries can be effectively avoided, and gravels and other soil matrixes can be completely segmented.
In the segmentation process, a pixel change gradient extracted by a Sobel filter is firstly used. And then determining a boundary and a segmentation target by using a regional watershed algorithm, and screening macropores, root systems and other non-gravel substances smaller than 2mm in the image by using a geometric filter after obtaining the binary image. And then comparing the images with the original images to check whether the gravels are completely separated from the soil matrix, and manually selecting and deleting non-gravels in the images by using a magic wand tool. Finally, a binarized image of the soil profile containing only gravel was generated, see fig. 6.
(10) Quantification of gravel volume: the volume percent is assumed to be equal to the percentage of outcrop area in the soil profile. Thus, the percentage of gravel volume is calculated from the percentage of projected area of outcrop observed, i.e., the percentage of white area in the binary image of the soil profile, i.e., RP =RP represents the percentage by gravel volume, RA represents the projected area of the gravel, and TA represents the total projected area of the soil profile image.
The invention is described in detail above with reference to the drawings and examples; however, it will be understood by those skilled in the art that various specific parameters of the above embodiments may be changed or equivalents may be substituted for related parts and structures thereof without departing from the spirit of the present invention, so as to form a plurality of specific embodiments, which are common variations of the present invention and will not be described in detail.

Claims (10)

1. The digital soil morphology measurement method based on the ImagePy is characterized by comprising the following steps of:
(1) Acquiring a soil profile: digging a soil section in a given area, cutting off exposed root systems, cleaning a smooth section, and adding a scale on a vertical section;
(2) Image acquisition: under the condition of sufficient light, shooting a plurality of soil profile images;
(3) Setting a scale and selecting an ROI: introducing the image obtained in the step (2) into image processing software, correcting a lens, eliminating chromatic aberration, adjusting image exposure, improving image quality, storing and exporting, introducing the exported image into an ImagePy, calling a measuring tool, setting a scale, and cutting out an ROI;
(4) HSV color model conversion: converting the ROI from an RGB color model to an HSV color model;
(5) Image segmentation: separating small-grain size, large-grain size and medium-grain size gravels from other substances in an image in H, S, V channels respectively, wherein the hue is adjusted in H channels, the saturation is adjusted in S channels and the brightness is adjusted in V channels;
(6) Noise reduction: carrying out fuzzy processing on the image by using a Gaussian filter, and enhancing the contrast between a small particle target and the large particle gravel in the S channel by using a maximum filter;
(7) And (3) image fusion: fusing the small-grain size, large-grain size and medium-grain size stone images in the H, S, V channel;
(8) Image screening: eliminating roots, macropores and other non-gravel objects in the <2 mm-sized portion of the image using a geometric filtering algorithm;
(9) Image repartitioning: performing image segmentation again by using a UDW algorithm, and storing and exporting;
(10) Quantification of gravel volume: the gravel volume percentage is calculated from the percentage of open-ended projected area observed in the soil profile.
2. The digital soil morphology measurement method according to claim 1, wherein in step (1), the soil section is rectangular, and the size is 1m x 0.5m.
3. The digital soil morphology measurement method according to claim 1, wherein in the step (2), a plurality of 0.5m sheets are photographed using a digital single phase inverter 2 A soil profile image of 6000 x 4000 pixels in range, the focal length of the image being 22mm and the camera lens being 1m from the soil profile.
4. The method according to claim 1, wherein in step (3), the image processing software is Adobe Photoshop 2021, and the configuration file in the software is used to correct the lens, eliminate chromatic aberration, adjust image exposure, improve image quality, and store and export images in tiff format.
5. The method according to claim 1, wherein in the step (3), the measuring tool is called by measurement→distance, the Scale is set by image→scale And Unit, the ROI is cut out by rectangular tool, and the selected size of the ROI is 0.5×0.5m.
6. The method according To claim 1, wherein in step (4), the Color model conversion is performed using a Color conversion module image→color→rgb To HSV encapsulated in ImagePy.
7. The digital soil morphology measurement method of claim 1, wherein in step (6), the Gaussian filter is called by Process → Filters → Gaussian, and the Maximum filter is called by Process → Filters → maximm.
8. The method according to claim 1, wherein in the step (7), the Image fusion is performed by a process→image Calculator; in step (8), the Minimum filter is invoked by process→filters→minimum.
9. The method according to claim 1, wherein in step (9), image segmentation is performed by process→hydrology→ Up And Down Watershed, and the image is stored and exported in tiff format.
10. The digital soil morphology measurement method of claim 1 wherein in step (10) the percentage of gravel volume is calculated from the percentage of white areas in the soil profile binary image: rp=ra/ta×100; where RP represents the percentage by gravel volume, RA represents the projected area of the gravel, and TA represents the total projected area of the soil profile image.
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