CN114246851B - Synthesis method and use of a small molecule inhibitor of histone methyltransferase SMYD3 - Google Patents
Synthesis method and use of a small molecule inhibitor of histone methyltransferase SMYD3 Download PDFInfo
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- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K31/00—Medicinal preparations containing organic active ingredients
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- A—HUMAN NECESSITIES
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- A61P35/00—Antineoplastic agents
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- C07C—ACYCLIC OR CARBOCYCLIC COMPOUNDS
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- C07C2602/04—One of the condensed rings being a six-membered aromatic ring
- C07C2602/08—One of the condensed rings being a six-membered aromatic ring the other ring being five-membered, e.g. indane
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Abstract
Description
技术领域Technical field
本发明涉及西药制药技术领域,具体地,涉及一种组蛋白甲基转移酶SMYD3小分子抑制剂及合成方法及用途。The present invention relates to the technical field of western medicine pharmaceuticals, and specifically to a small molecule inhibitor of histone methyltransferase SMYD3 and its synthesis method and use.
背景技术Background technique
SMYD3(SET和MYND结构域蛋白3)是近年来发现的具有组蛋白甲基化功能的蛋白质。可使染色体组蛋白(H3K4等)发生二甲基化或三甲基化,导致染色体空间结构改变,改变转录复合体的紧密性和开放性,调节基因转录,从而影响下游癌基因、细胞周期基因、核激素受体,粘附相关基因,抑制肿瘤细胞凋亡,促进细胞增殖、侵袭和转移。多项研究证实,SMYD3在不同种类的癌细胞中均高表达,而在相应的正常组织中表达量较低,甚至检测不到。SMYD3基因沉默实验观察到明显的肿瘤细胞生长抑制和凋亡增加。因此,SMYD3已成为抗肿瘤药物新的表观遗传靶点。目前文献报导的绝大多数SMYD3抑制剂都是多肽,小分子抑制剂的相研究还十分缺乏。与生物大分子相比,小分子抑制剂因其结构简单,具有合成相对容易,可口服,易储存与运输,组织渗透性好,能部分通过血脑屏障且没有免疫原性的优势;已报导的几个小分子抑制剂虽然能在一定程度上抑制SMYD3的表达,但存在生物兼容性差、抑制效率低等问题。针对SMYD3靶点的高效、安全、有选择性的小分子靶向抗癌药物未见报道。SMYD3 (SET and MYND domain protein 3) is a protein with histone methylation function discovered in recent years. It can cause dimethylation or trimethylation of chromosomal histones (H3K4, etc.), leading to changes in the spatial structure of chromosomes, changing the tightness and openness of the transcription complex, regulating gene transcription, thereby affecting downstream oncogenes and cell cycle genes. , nuclear hormone receptors, adhesion-related genes, inhibit tumor cell apoptosis, and promote cell proliferation, invasion and metastasis. Multiple studies have confirmed that SMYD3 is highly expressed in different types of cancer cells, while the expression level in corresponding normal tissues is low or even undetectable. SMYD3 gene silencing experiments observed significant tumor cell growth inhibition and increased apoptosis. Therefore, SMYD3 has become a new epigenetic target for anti-tumor drugs. The vast majority of SMYD3 inhibitors reported in the literature are polypeptides, and there is still a lack of research on small molecule inhibitors. Compared with biological macromolecules, small molecule inhibitors have the advantages of being relatively easy to synthesize due to their simple structure, can be taken orally, are easy to store and transport, have good tissue permeability, can partially pass through the blood-brain barrier, and have no immunogenicity; it has been reported Although several small molecule inhibitors can inhibit the expression of SMYD3 to a certain extent, they have problems such as poor biocompatibility and low inhibition efficiency. There are no reports on efficient, safe and selective small molecule targeted anti-cancer drugs targeting the SMYD3 target.
发明内容Contents of the invention
有鉴于此,有必要提供一种组蛋白甲基转移酶SMYD3小分子抑制剂。In view of this, it is necessary to provide a small molecule inhibitor of histone methyltransferase SMYD3.
还有必要提供一种组蛋白甲基转移酶SMYD3小分子抑制剂合成方法。It is also necessary to provide a synthesis method of a small molecule inhibitor of histone methyltransferase SMYD3.
还有必要提供一种组蛋白甲基转移酶SMYD3小分子抑制剂用途。There is also a need to provide a small molecule inhibitor of histone methyltransferase SMYD3.
一种组蛋白甲基转移酶SMYD3小分子抑制剂,组蛋白甲基转移酶SMYD3小分子抑制剂分子式为:C25H24N2O2。A small molecule inhibitor of histone methyltransferase SMYD3. The molecular formula of the small molecule inhibitor of histone methyltransferase SMYD3 is: C 25 H 24 N 2 O 2 .
优选的,组蛋白甲基转移酶SMYD3小分子抑制剂的化学结构式为:Preferably, the chemical structural formula of the histone methyltransferase SMYD3 small molecule inhibitor is:
一种组蛋白甲基转移酶SMYD3小分子抑制剂合成方法,包括以下步骤:A method for synthesizing a small molecule inhibitor of histone methyltransferase SMYD3, including the following steps:
称取相应化合物1,3-茚满二酮置于烧瓶中,加入无水乙腈,搅拌使其溶解,然后加入碘甲烷、氟化钾,在反应体系内充入氮气,于70摄氏度反应,然后检测反应进度,待反应完成后,冷却至室温,然后向反应液中加入H2O进行淬灭,用CH2Cl2萃取,收集有机相,无水Na2SO4干燥,减压下浓缩,柱层析分离得到中间体2,2-二甲基茚满二酮;Weigh the corresponding compound 1,3-indandione into a flask, add anhydrous acetonitrile, stir to dissolve, then add methyl iodide and potassium fluoride, fill the reaction system with nitrogen, react at 70 degrees Celsius, and then Check the progress of the reaction. After the reaction is completed, cool to room temperature, then add H 2 O to the reaction solution for quenching, extract with CH 2 Cl 2 , collect the organic phase, dry over anhydrous Na 2 SO 4 , and concentrate under reduced pressure. The intermediate 2,2-dimethylindandione is obtained through column chromatography separation;
称取上述中间体2,2-二甲基茚满二酮,并置于烧瓶中,加入无水甲苯,搅拌使其溶解,然后加入对茴香胺、氟化钾,在搅拌条件下缓慢滴入1-2滴对甲基苯磺酸,在回流条件下反应,然后检测反应进度,待反应完成后,冷却至室温,反应液中加入H2O进行淬灭,用CH2Cl2萃取,收集有机相,无水Na2SO4干燥,减压下浓缩,柱层析分离得到组蛋白甲基转移酶SMYD3小分子抑制剂,并将组蛋白甲基转移酶SMYD3小分子抑制剂定义为ZYZ384。Weigh the above intermediate 2,2-dimethylindandione and place it in a flask. Add anhydrous toluene and stir to dissolve. Then add p-anisidine and potassium fluoride and slowly drip in under stirring conditions. Add 1-2 drops of p-toluenesulfonic acid, react under reflux conditions, and then check the reaction progress. After the reaction is completed, cool to room temperature, add H 2 O to the reaction solution to quench, extract with CH 2 Cl 2 , and collect The organic phase was dried over anhydrous Na 2 SO 4 , concentrated under reduced pressure, and separated by column chromatography to obtain a small molecule inhibitor of histone methyltransferase SMYD3, which was defined as ZYZ384.
优选的,组蛋白甲基转移酶SMYD3小分子抑制剂合成方法中,用电子分析天平称取相应化合物2mmol的1,3-茚满二酮292.2mg,置于25mL的圆底烧瓶中,加入2mL无水乙腈,搅拌使其溶解,然后加入6mmol碘甲烷、10mmol氟化钾,采用薄层色谱法检测反应进度,待反应完成后,冷却至室温,反应液中加入H2O进行淬灭,用3×20mLCH2Cl2萃取;Preferably, in the synthesis method of the histone methyltransferase SMYD3 small molecule inhibitor, use an electronic analytical balance to weigh 2 mmol of the corresponding compound 292.2 mg of 1,3-indandione, place it in a 25 mL round-bottomed flask, and add 2 mL Anhydrous acetonitrile, stir to dissolve, then add 6 mmol methyl iodide and 10 mmol potassium fluoride, and use thin layer chromatography to detect the reaction progress. After the reaction is completed, cool to room temperature, add H 2 O to the reaction solution to quench, and use 3×20mL CH 2 Cl 2 extraction;
用电子分析天平称取上述中间体1mmol 2,2-二甲基茚满二酮174.1mg,置于25mL的圆底烧瓶中,加入2mL无水甲苯,搅拌使其溶解,然后加入2.5mmol对茴香胺308mg、10mmol氟化钾,在搅拌条件下缓慢滴入1-2滴对甲基苯磺酸,在回流条件下反应,采用薄层色谱法TLC检测反应进度,待反应完成后,冷却至室温,反应液中加入H2O进行淬灭,用3×20mLCH2Cl2萃取。Use an electronic analytical balance to weigh 1 mmol of the above intermediate 2,2-dimethylindandione (174.1 mg), place it in a 25 mL round bottom flask, add 2 mL of anhydrous toluene, stir to dissolve, and then add 2.5 mmol of p-fennel Take 308 mg of amine and 10 mmol of potassium fluoride, slowly add 1-2 drops of p-toluenesulfonic acid under stirring conditions, react under reflux conditions, and use thin layer chromatography and TLC to detect the reaction progress. After the reaction is completed, cool to room temperature. , add H 2 O to the reaction solution for quenching, and extract with 3 × 20 mL CH 2 Cl 2 .
一种组蛋白甲基转移酶SMYD3小分子抑制剂用途,组蛋白甲基转移酶SMYD3小分子抑制剂用于降低癌细胞的增殖。A small molecule inhibitor of histone methyltransferase SMYD3 is used to reduce the proliferation of cancer cells.
优选的,组蛋白甲基转移酶SMYD3小分子抑制剂用于肝癌的治疗药物。Preferably, the small molecule inhibitor of histone methyltransferase SMYD3 is used as a therapeutic drug for liver cancer.
优选的,组蛋白甲基转移酶SMYD3小分子抑制剂用于抑制肝脏原位瘤生长。Preferably, a small molecule inhibitor of histone methyltransferase SMYD3 is used to inhibit the growth of liver in situ tumors.
优选的,组蛋白甲基转移酶SMYD3小分子抑制剂用于降低肺癌细胞、人结肠癌细胞、人乳腺癌细胞或人胰腺腺癌细胞的增殖。Preferably, the small molecule inhibitor of histone methyltransferase SMYD3 is used to reduce the proliferation of lung cancer cells, human colon cancer cells, human breast cancer cells or human pancreatic adenocarcinoma cells.
本发明通过薛定谔软件进行虚拟筛选,测试十万个候选小分子来识别SMYD3抑制剂,并选择排名靠前的分子用BLI(Bio-layerinterferometry,生物膜层干涉技术)实验评估它们的结合活性筛选出先导化合物。对先导化合物结构进行改造,合成了一系列全新的小分子抑制剂,用BLI和SMYD3酶活实验测定它们的抑制活性,其中组蛋白甲基转移酶SMYD3小分子抑制剂表现出最好的结合力和抑制效力,经计算机分析组蛋白甲基转移酶SMYD3小分子抑制剂成药性后,进一步测试了组蛋白甲基转移酶SMYD3小分子抑制剂在体外对不同癌细胞系的抗癌活性。用C57小鼠评价组蛋白甲基转移酶SMYD3小分子抑制剂安全性后,建立NTG小鼠原位HepG2原位瘤模型,灌胃给药三周后取材,收集各组肝脏,脾脏并观察、统计、分析。The present invention performs virtual screening through Schrödinger software, tests 100,000 candidate small molecules to identify SMYD3 inhibitors, and selects the top-ranked molecules to evaluate their binding activity through BLI (Bio-layer interferometry, biological film layer interference technology) experiments. Lead compound. The structure of the lead compound was modified and a series of new small molecule inhibitors were synthesized. Their inhibitory activities were measured using BLI and SMYD3 enzyme activity experiments. Among them, the small molecule inhibitor of histone methyltransferase SMYD3 showed the best binding ability. and inhibitory potency. After computer analysis of the druggability of histone methyltransferase SMYD3 small molecule inhibitors, the anticancer activity of histone methyltransferase SMYD3 small molecule inhibitors against different cancer cell lines in vitro was further tested. After using C57 mice to evaluate the safety of small molecule inhibitors of histone methyltransferase SMYD3, an orthotopic HepG2 orthotopic tumor model was established in NTG mice. After three weeks of intragastric administration, materials were collected. The livers and spleens of each group were collected and observed. Statistical Analysis.
结果表明,组蛋白甲基转移酶SMYD3小分子抑制剂与SMYD3蛋白呈剂量依赖性结合,降低SMYD3酶活力。组蛋白甲基转移酶SMYD3小分子抑制剂以剂量依赖性方式显着降低不同癌细胞增殖:包括人肝癌细胞HepG2、人非小细胞肺癌细胞A549、人结肠癌细胞HTC116、人乳腺癌细胞MDA-MB-231和人胰腺腺癌细胞Miapaca2。其中,组蛋白甲基转移酶SMYD3小分子抑制剂对HepG2增殖表现出显著的抑制作用,具有抗癌细胞增殖的作用。一次性给予C57小鼠组蛋白甲基转移酶SMYD3小分子抑制剂最大剂量灌胃给药后观察十四天,十四天内无一例小鼠死亡。组蛋白甲基转移酶SMYD3小分子抑制剂能抑制NTG(重度联合免疫缺陷)小鼠肝脏HepG2原位种植瘤的生长,能够在体内降低原位瘤模型肝脏SMYD3蛋白表达量。如此,本发明提供的组蛋白甲基转移酶SMYD3小分子抑制剂对肝癌有显著治疗作用,安全有效,可用于制备治疗肝癌等癌症的药物。The results show that small molecule inhibitors of histone methyltransferase SMYD3 bind to SMYD3 protein in a dose-dependent manner and reduce SMYD3 enzyme activity. Small molecule inhibitors of histone methyltransferase SMYD3 significantly reduced the proliferation of different cancer cells in a dose-dependent manner: including human liver cancer cell HepG2, human non-small cell lung cancer cell A549, human colon cancer cell HTC116, and human breast cancer cell MDA- MB-231 and human pancreatic adenocarcinoma cell Miapaca2. Among them, small molecule inhibitors of histone methyltransferase SMYD3 showed significant inhibitory effects on HepG2 proliferation and had anti-cancer cell proliferation effects. The maximum dose of a small molecule inhibitor of histone methyltransferase SMYD3 was administered to C57 mice at one time and then observed for fourteen days. No mouse died within fourteen days. Small molecule inhibitors of histone methyltransferase SMYD3 can inhibit the growth of HepG2 orthotopic implanted tumors in the liver of NTG (severe combined immunodeficiency) mice, and can reduce the expression of SMYD3 protein in the liver of orthotopic tumor models in vivo. In this way, the small molecule inhibitor of histone methyltransferase SMYD3 provided by the present invention has a significant therapeutic effect on liver cancer, is safe and effective, and can be used to prepare drugs for the treatment of liver cancer and other cancers.
附图说明Description of the drawings
图1为组蛋白甲基转移酶SMYD3小分子抑制剂的化学结构式示意图;Figure 1 is a schematic diagram of the chemical structural formula of a small molecule inhibitor of histone methyltransferase SMYD3;
图2为组蛋白甲基转移酶SMYD3小分子抑制剂合成路线示意图;Figure 2 is a schematic diagram of the synthesis route of small molecule inhibitors of histone methyltransferase SMYD3;
图3为利用BLI实验检测ZYZ384在不同浓度和SMYD3蛋白的结合和解离曲线示意图;Figure 3 is a schematic diagram of the binding and dissociation curves of ZYZ384 and SMYD3 protein at different concentrations using BLI experiments;
图中:曲线a为200μM的结合解离曲线,曲线b为100μM的结合解离曲线,曲线c为50μM的结合解离曲线,曲线d为25μM的结合解离曲线,曲线e为12.25μM的结合解离曲线,曲线f为6.25μM的结合解离曲线;In the figure: Curve a is the binding and dissociation curve of 200 μM, curve b is the binding and dissociation curve of 100 μM, curve c is the binding and dissociation curve of 50 μM, curve d is the binding and dissociation curve of 25 μM, and curve e is the binding of 12.25 μM. Dissociation curve, curve f is the binding and dissociation curve of 6.25μM;
图4为利用BLI实验检测ZYZ384和SMYD3蛋白的拟合曲线示意图;Figure 4 is a schematic diagram of the fitting curve using BLI experiment to detect ZYZ384 and SMYD3 proteins;
图中:KD:平衡解离常数,Kon:结合常数,Kdis:解离常数,R2:线性回归决定系数;In the figure: KD: equilibrium dissociation constant, Kon: binding constant, Kdis: dissociation constant, R2: linear regression coefficient of determination;
图5为基于分子对接模拟的ZYZ384与SMYD3蛋白的相互作用位点的示意图;Figure 5 is a schematic diagram of the interaction site between ZYZ384 and SMYD3 protein based on molecular docking simulation;
图6为ZYZ384在体外抑制SMYD3酶活力分析结果示意图;Figure 6 is a schematic diagram of the analysis results of ZYZ384 inhibiting SMYD3 enzyme activity in vitro;
图7为SMYD3小分子抑制剂ZYZ384及其相关抑制剂的成药性研究分析曲线示意图;Figure 7 is a schematic diagram of the druggability research analysis curve of the SMYD3 small molecule inhibitor ZYZ384 and its related inhibitors;
图8为利用MTT方法检测ZYZ384对不同癌细胞增殖抑制作用示意图;Figure 8 is a schematic diagram of using the MTT method to detect the inhibitory effect of ZYZ384 on the proliferation of different cancer cells;
图中:HepG2:人肝癌细胞、Miapaca2:人胰腺腺癌细胞、MDA-MB-231人乳腺癌细胞、HTC116人结肠癌细胞、A549:人非小细胞肺癌细胞。**:p<0.01;***:p<0.001;In the picture: HepG2: human liver cancer cell, Miapaca2: human pancreatic adenocarcinoma cell, MDA-MB-231 human breast cancer cell, HTC116 human colon cancer cell, A549: human non-small cell lung cancer cell. **: p<0.01; ***: p<0.001;
图9为利用小鼠急毒实验方法评价ZYZ384的安全性的结果示意图;Figure 9 is a schematic diagram of the results of evaluating the safety of ZYZ384 using the mouse acute toxicity test method;
图10为利用NTG小鼠原位瘤模型检测ZYZ384抗肿瘤作用的结果示意图;Figure 10 is a schematic diagram of the results of testing the anti-tumor effect of ZYZ384 using the NTG mouse orthotopic tumor model;
其中:Control:正常对照组,Model:模型组,ZYZ384:模型+ZYZ384。###:p<0.001vsControl;***:p<0.001vs Model;**:p<0.01vs ModelAmong them: Control: normal control group, Model: model group, ZYZ384: model+ZYZ384. ###:p<0.001vsControl; ***:p<0.001vs Model; **:p<0.01vs Model
图11为利用免疫组化和Westernblot方法检测小鼠肝脏组织中SMYD3蛋白水平结果示意图;Figure 11 is a schematic diagram of the results of detecting SMYD3 protein levels in mouse liver tissue using immunohistochemistry and Westernblot methods;
图中,数据用目的基因和相应内参GAPDH相比;其中:control:正常对照组,Model:模型组,ZYZ384:模型+ZYZ384,*:p<0.05vs Control;#:p<0.05vs Model。In the figure, the data is compared with the target gene and the corresponding internal reference GAPDH; where: control: normal control group, Model: model group, ZYZ384: model + ZYZ384, *: p<0.05vs Control; #: p<0.05vs Model.
具体实施方式Detailed ways
为了使本发明技术方案更容易理解,现结合附图采用具体实施例的方式,对本发明的技术方案进行清晰、完整的描述。In order to make the technical solution of the present invention easier to understand, the technical solution of the present invention is now clearly and completely described by way of specific embodiments in conjunction with the accompanying drawings.
实施例1,请同时参阅图1及图2,组蛋白甲基转移酶SMYD3小分子抑制剂合成的具体路线为:Example 1, please refer to Figure 1 and Figure 2 at the same time. The specific synthesis route of the histone methyltransferase SMYD3 small molecule inhibitor is:
用电子分析天平称取相应化合物1,3-茚满二酮(1,3-Indanedione,292.2mg,2mmol)置于25mL的圆底烧瓶中,加入2mL无水乙腈,搅拌使其溶解,然后加入碘甲烷(6mmol))、氟化钾(10mmol),在反应体系内充入氮气,于70度反应,采用薄层色谱法(TLC)检测反应进度,待反应完成后,冷却至室温,反应液中加入H2O进行淬灭,用CH2Cl2萃取(3×20mL),收集有机相,无水Na2SO4干燥,减压下浓缩,柱层析分离得到中间体2,2-二甲基茚满二酮(2,2-Dimethylindan-1,3-dione)313mg,产率为90%。核磁共振谱:1H NMR(600MHzDMSO)δ7.99-8.03(m,4H),1.18(s,6H);13C NMR(150MHz,DMSO)δ203.24,139.23,135.92,122.84,48.63,19.47。Use an electronic analytical balance to weigh the corresponding compound 1,3-Indanedione (292.2 mg, 2 mmol) into a 25 mL round-bottomed flask, add 2 mL anhydrous acetonitrile, stir to dissolve, and then add Methyl iodide (6mmol)) and potassium fluoride (10mmol), fill the reaction system with nitrogen, react at 70 degrees, use thin layer chromatography (TLC) to detect the reaction progress, after the reaction is completed, cool to room temperature, the reaction solution Add H 2 O to quench, extract with CH 2 Cl 2 (3 × 20 mL), collect the organic phase, dry over anhydrous Na 2 SO 4 , concentrate under reduced pressure, and separate by column chromatography to obtain the intermediate 2,2-bis Methylindanedione (2,2-Dimethylindan-1,3-dione) 313 mg, yield 90%. Nuclear magnetic resonance spectrum: 1 H NMR (600MHz DMSO) δ7.99-8.03 (m, 4H), 1.18 (s, 6H); 13 C NMR (150MHz, DMSO) δ 203.24, 139.23, 135.92, 122.84, 48.63, 19.47.
用电子分析天平称取上述中间体2,2-二甲基茚满二酮(174.1mg,1mmol)置于25mL的圆底烧瓶中,加入2mL无水甲苯,搅拌使其溶解,然后加入对茴香胺(308mg,2.5mmol))、氟化钾(10mmol),在搅拌条件下缓慢滴入1-2滴对甲基苯磺酸,在回流条件下反应,采用薄层色谱法(TLC)检测反应进度,待反应完成后,冷却至室温,反应液中加入H2O进行淬灭,用CH2Cl2萃取(3×20mL),收集有机相,无水Na2SO4干燥,减压下浓缩,柱层析分离得到组蛋白甲基转移酶SMYD3小分子抑制剂238mg,产率为62%。核磁共振谱:1H NMR(600MHz,DMSO)δ8.08(dd,J=1.6,7.6Hz,2H),7.74(dd,J=1.6,7.6Hz,2H),7.38(d,J=7.6Hz,4H,6.96(d,J=7.6Hz,4H),3.79(s,6H),1.03(s,6H);13C NMR(150MHz,DMSO)δ165.4,158.2,144.5,132.8,131.4,131.0,122.9,114.9,56.0,44.1,26.2。Use an electronic analytical balance to weigh the above intermediate 2,2-dimethylindandione (174.1 mg, 1 mmol) into a 25 mL round-bottomed flask, add 2 mL anhydrous toluene, stir to dissolve, and then add p-fennel Amine (308 mg, 2.5 mmol)), potassium fluoride (10 mmol), slowly drop 1-2 drops of p-toluenesulfonic acid under stirring conditions, react under reflux conditions, and use thin layer chromatography (TLC) to detect the reaction. After the reaction is completed, cool to room temperature, add H 2 O to the reaction solution to quench, extract with CH 2 Cl 2 (3×20 mL), collect the organic phase, dry over anhydrous Na 2 SO 4 , and concentrate under reduced pressure , column chromatography separated and obtained 238 mg of histone methyltransferase SMYD3 small molecule inhibitor with a yield of 62%. Nuclear magnetic resonance spectrum: 1 H NMR (600MHz, DMSO) δ8.08 (dd, J=1.6, 7.6Hz, 2H), 7.74 (dd, J=1.6, 7.6Hz, 2H), 7.38 (d, J=7.6Hz ,4H,6.96(d,J=7.6Hz,4H),3.79(s,6H),1.03(s,6H); 13 C NMR(150MHz,DMSO)δ165.4,158.2,144.5,132.8,131.4,131.0,122.9 ,114.9,56.0,44.1,26.2.
组蛋白甲基转移酶SMYD3小分子抑制剂分子式为:C25H24N2O2。The molecular formula of the small molecule inhibitor of histone methyltransferase SMYD3 is: C 25 H 24 N 2 O 2 .
组蛋白甲基转移酶SMYD3小分子抑制剂的化学结构式如图1所示,合成路线如图2所示,组蛋白甲基转移酶SMYD3小分子抑制剂其命名方式采用本申请的研发课题组名缩写ZYZ和分子量命名,命名为ZYZ384。The chemical structural formula of the small molecule inhibitor of histone methyltransferase SMYD3 is shown in Figure 1, and the synthetic route is shown in Figure 2. The naming method of the small molecule inhibitor of histone methyltransferase SMYD3 adopts the name of the research and development project group of this application. Abbreviation ZYZ and molecular weight designation, named ZYZ384.
实施例2ZYZ384与SMYD3蛋白结合力的实验Example 2 Experiment on the binding ability of ZYZ384 and SMYD3 protein
方法:将SMYD3-GST标签蛋白固定在谷胱甘肽S-转移酶(GST)生物传感器(Fortebio)上。ZYZ384被稀释成不同的浓度,时间范围从6.25μM到200μM。用PBS设置基线后,将生物传感器尖端浸入含有ZYZ384连续稀释液的孔中经过180秒结合,180秒的解离后。保存数据,使用数据分析软件9.0(Fortebio)中的1:1结合模型计算KD值,以实时模式监测结合和解离曲线,请同时参阅图3,曲线a为200μM的结合解离曲线,曲线b为100μM的结合解离曲线,曲线c为50μM的结合解离曲线,曲线d为25μM的结合解离曲线,曲线e为12.25μM的结合解离曲线,曲线f为6.25μM的结合解离曲线;计算机根据图3的结合解离曲线分析计算出如图4所示的结果显示,线性回归决定系数R2=0.9563,按照简单的1:1结合模式,SMYD3和ZYZ384之间相互作用的平衡解离常数(KD)为79.9μM,ZYZ384与SMYD3的结合、解离呈剂量依赖性。Methods: SMYD3-GST tagged protein was immobilized on glutathione S-transferase (GST) biosensor (Fortebio). ZYZ384 was diluted into different concentrations, ranging from 6.25 μM to 200 μM. After setting the baseline with PBS, the biosensor tip was immersed in wells containing serial dilutions of ZYZ384 for 180 seconds of association and 180 seconds of dissociation. Save the data, use the 1:1 binding model in data analysis software 9.0 (Fortebio) to calculate the KD value, and monitor the binding and dissociation curves in real-time mode. Please also refer to Figure 3. Curve a is the binding and dissociation curve of 200 μM, and curve b is The binding and dissociation curve of 100 μM, curve c is the binding and dissociation curve of 50 μM, curve d is the binding and dissociation curve of 25 μM, curve e is the binding and dissociation curve of 12.25 μM, and curve f is the binding and dissociation curve of 6.25 μM; computer According to the binding and dissociation curve analysis in Figure 3, the results shown in Figure 4 are calculated, showing that the linear regression determination coefficient R 2 =0.9563, according to the simple 1:1 binding mode, the equilibrium dissociation constant of the interaction between SMYD3 and ZYZ384 (KD) is 79.9 μM, and the binding and dissociation of ZYZ384 and SMYD3 are dose-dependent.
实施例3ZYZ-384与SMYD3蛋白的分子对接Example 3 Molecular docking of ZYZ-384 and SMYD3 protein
ZYZ-384与SMYD3蛋白通过Discovery Studi0(2021)软件的CDOCKER进行分子对接分析。最佳结合模式和相互作用通过Discovery Studio软件和Pymol(Version 2.5.2)软件进行分析。ZYZ-384与SMYD3结合能为-8.73kcal/mol,结合口袋合理,有利于维持ZYZ-384与SMYD3稳定的构象,如图5所示,结合区域包括SER-182,PHE-183,CYS-186,MET-190,ILE-214,TYR-257,LYS-297,HIS-366和VAL-368等多个氨基酸残基,能够形成氢键,范德华力和Pi-Pi共轭等多种相互作用,其中ZYZ-384上的甲氧基与Smyd3蛋白的TYR-257,SER-182,ASP-332以及LYS-297形成氢键相互作用,SMYD3的PHE-183,ILE-214,HIS-366,VAL-368和MET-190与ZYZ-384存在共轭相互作用,这些作用为维持ZYZ-384与SMYD3复合物的稳定性具有重要意义,这些作用位点可能是ZYZ-384产生生理作用的关键位点。ZYZ-384 and SMYD3 protein were analyzed by molecular docking using CDOCKER of Discovery Studio (2021) software. The optimal binding mode and interaction were analyzed by Discovery Studio software and Pymol (Version 2.5.2) software. The binding energy of ZYZ-384 and SMYD3 is -8.73kcal/mol, and the binding pocket is reasonable, which is conducive to maintaining the stable conformation of ZYZ-384 and SMYD3. As shown in Figure 5, the binding region includes SER-182, PHE-183, and CYS-186. , MET-190, ILE-214, TYR-257, LYS-297, HIS-366 and VAL-368 and other amino acid residues, can form various interactions such as hydrogen bonds, van der Waals forces and Pi-Pi conjugation, Among them, the methoxy group on ZYZ-384 forms hydrogen bond interactions with TYR-257, SER-182, ASP-332 and LYS-297 of Smyd3 protein, and PHE-183, ILE-214, HIS-366, VAL- of SMYD3 368 and MET-190 have conjugated interactions with ZYZ-384. These interactions are important for maintaining the stability of the complex between ZYZ-384 and SMYD3. These action sites may be key sites for the physiological effects of ZYZ-384.
实施例4ZYZ384抑制SMYD3酶活力实验Example 4 ZYZ384 inhibition of SMYD3 enzyme activity experiment
方法:使用SMYD3均相检测试剂盒(BPS bioscience,美国),只需在微量滴定板上三个简单的步骤即可检测甲基转移酶活性。首先,将含有SMYD3酶的样品与底物及不同浓度抑制剂(ZYZ384)孵育三小时。接下来,加入受体珠和一抗,最后加入供体珠,然后读取Alpha计数。Methods: Using the SMYD3 homogeneous detection kit (BPS bioscience, USA), methyltransferase activity can be detected in just three simple steps on a microtiter plate. First, samples containing the SMYD3 enzyme were incubated with substrate and varying concentrations of inhibitor (ZYZ384) for three hours. Next, acceptor beads and primary antibodies are added, and finally donor beads are added, and the alpha count is read.
实验结果如图6显示,ZYZ384能剂量依赖性降低SMYD3酶活力。The experimental results show in Figure 6 that ZYZ384 can reduce SMYD3 enzyme activity in a dose-dependent manner.
实施例5Smyd3抑制剂ZYZ-384及其相关抑制剂的ADMET预测Example 5 ADMET prediction of Smyd3 inhibitor ZYZ-384 and its related inhibitors
方法:用Discovery Studio软件计算ADMET(药物的吸收AbsorptionMethod: Use Discovery Studio software to calculate ADMET (drug absorption
,分配Distribution,代谢Metabolism,排泄Excretion和毒性Toxicity)性质:25摄氏度下水溶解度(aqueous solubility);血脑屏障通透性(Blood brain barrierpenetration,BBB);细胞色素P4502D6抑制性(Cytochrome P4502D6inhibition),肝毒性(hepatotoxicity);人类肠道吸收性(human intestinal absorption,HIA),血浆蛋白结合率(plasma protein binding),通过Discovery Studio中Small Molecules|CalculateMolecular Properties|ADMET Descriptors,参数选择默认设置,将计算ZYZ-384及其相关抑制剂的ADMET性质,其结果如图3和图4所示,该ADMET plot是一个ADMET_PSA_2D vsADMET_AlogP98的二维图,二维图中分别表示了血脑屏障通透性(BBB)模型95%和99%的置信区间,以及人体肠道吸收性(HIA)模型95%和99%的置信区间,通过分析如图7所示,ZYZ-384具有较好的ADMET性质,成药性好。, Distribution, Metabolism, Excretion and Toxicity) Properties: aqueous solubility at 25 degrees Celsius; blood brain barrier permeability (BBB); Cytochrome P4502D6 inhibition (Cytochrome P4502D6inhibition), hepatotoxicity (hepatotoxicity); human intestinal absorption (HIA), plasma protein binding rate (plasma protein binding), through Small Molecules|CalculateMolecular Properties|ADMET Descriptors in Discovery Studio, parameter selection default settings, ZYZ-384 will be calculated The ADMET properties of its related inhibitors, the results are shown in Figure 3 and Figure 4. The ADMET plot is a two-dimensional graph of ADMET_PSA_2D vsADMET_AlogP98. The two-dimensional graph respectively represents the blood-brain barrier permeability (BBB) model95 % and 99% confidence intervals, as well as the 95% and 99% confidence intervals of the Human Intestinal Absorption (HIA) model. As shown in Figure 7, ZYZ-384 has good ADMET properties and good drugability.
实施例6ZYZ384细胞毒性实验。Example 6 ZYZ384 cytotoxicity experiment.
方法:将100mL培养基中的细胞(1×104/孔)接种在96孔板中并用ZYZ384处理。处理24小时后,通过添加1mg/ml含MTT的培养基进行4小时测定,然后加入100毫升DMSO以溶解甲臜,从而确定细胞活力。使用微孔板UV/VIS分光光度计(Tecan,Mannedorf,Switzerland)记录570nm处的吸光度,和细胞增殖情况,结果如图8,表明,ZYZ384以剂量依赖性方式显着降低不同癌细胞增殖:包括人肝癌细胞HepG2、腺癌人肺泡基底上皮细胞A549、人结肠癌细胞HTC116、人乳腺癌细胞MDA-MB-231和人胰腺腺癌细胞Miapaca2,其中,ZYZ384对HepG2增殖表现出显著的抑制作用(IC50=5.23μM)。Method: Cells (1×104/well) in 100 mL culture medium were seeded in a 96-well plate and treated with ZYZ384. After 24 hours of treatment, cell viability was determined by adding 1 mg/ml MTT-containing medium for 4 hours and then adding 100 ml DMSO to dissolve formazan. A microplate UV/VIS spectrophotometer (Tecan, Mannedorf, Switzerland) was used to record the absorbance at 570 nm and cell proliferation. The results are shown in Figure 8, which shows that ZYZ384 significantly reduces the proliferation of different cancer cells in a dose-dependent manner: including Human liver cancer cell HepG2, adenocarcinoma human alveolar basal epithelial cell A549, human colon cancer cell HTC116, human breast cancer cell MDA-MB-231 and human pancreatic adenocarcinoma cell Miapaca2. Among them, ZYZ384 showed a significant inhibitory effect on HepG2 proliferation ( IC50=5.23μM).
实验结果证明,所述的ZYZ384对多种癌细胞具有明显增殖抑制作用。Experimental results prove that the ZYZ384 has significant inhibitory effects on the proliferation of various cancer cells.
实施例7ZYZ384动物毒性实验Example 7 ZYZ384 animal toxicity test
C57小鼠分组:随机挑选周龄6周,体重22-26g状态良好的C57雄性小鼠20只,体重18-22克,随机分为空白组和给药组(n=10)。经灌胃一次给予最大量2g/kg/次,连续观察14天。如图9所示,实验结果显示给药后14天中无一例死亡,小鼠摄食、摄水、自发活动等未见异常。ZYZ384的LD50>2g/kg。Grouping of C57 mice: 20 C57 male mice in good condition, 6 weeks old and weighing 22-26g, weighing 18-22g were randomly selected and randomly divided into a blank group and a drug administration group (n=10). The maximum dose of 2g/kg/time was given via intragastric administration once, and the patient was observed continuously for 14 days. As shown in Figure 9, the experimental results showed that no case died within 14 days after administration, and no abnormalities were found in the mice's food intake, water intake, and spontaneous activities. The LD50 of ZYZ384>2g/kg.
实施例8ZYZ384抑制NTG小鼠肝脏原位瘤生长实验Example 8 Experiment on ZYZ384 inhibiting the growth of liver orthotopic tumors in NTG mice
NTG小鼠分组:随机挑选周龄6周,体重22-26g状态良好的雄性NTG小鼠30只,随机分成3组(n=10),即:①CON为正常对照组;②MODEL为模型组;③ZYZ384为模型组加ZYZ384组;②③组小鼠腹腔注射0.8%戊巴比妥钠(75mg/kg)进行麻醉,仰卧位固定,剃去腹部毛发,在胸骨下缘2cm处沿腹中线向上剪开皮肤约1cm,分离并剪开腹膜,暴露肝脏,轻压腹部,挤出肝脏左叶,用注射器将HepG2细胞悬液100μL(1×106/100μL)缓慢注入肝被膜下的肝实质内,针头与肝脏表面约呈30°角,刺入深度为1cm,见注射部位的肝脏组织变白,证明注射成功,缓慢拨出针头,用止血棉轻压注射部位,以防出血及细胞外溢。将肝脏还回自然位置,用6.0号可吸收性外科缝线缝合腹膜及皮肤切口。接种后第3周,在肝脏表面接种部位出现灰白色小结节表明模型成功。给药:③组每天灌胃给予ZYZ384100mg/kg/day。3周之后小鼠处死,分离肝脏和脾脏用于之后的分析检测。实验数据进行单因素方差分析,p<0.05。Grouping of NTG mice: Randomly select 30 male NTG mice that are 6 weeks old and weigh 22-26g and are in good condition, and randomly divided into 3 groups (n=10), namely: ①CON is the normal control group; ②MODEL is the model group; ③ZYZ384 Add ZYZ384 group to the model group; mice in groups ② and ③ were anesthetized by intraperitoneal injection of 0.8% sodium pentobarbital (75 mg/kg), fixed in a supine position, shaved abdominal hair, and cut the skin upward along the midline of the abdomen 2cm below the sternum. About 1cm, separate and cut the peritoneum, expose the liver, press the abdomen gently, squeeze out the left lobe of the liver, and use a syringe to slowly inject 100μL of HepG2 cell suspension (1×106/100μL) into the liver parenchyma under the liver capsule. The needle is in contact with the liver. The surface is at an angle of about 30° and the penetration depth is 1cm. If the liver tissue at the injection site turns white, it proves that the injection is successful. Slowly remove the needle and gently press the injection site with hemostatic cotton to prevent bleeding and cell overflow. The liver was returned to its natural position, and the peritoneal and skin incisions were sutured with No. 6.0 absorbable surgical sutures. At 3 weeks after inoculation, the appearance of small gray-white nodules at the inoculation site on the surface of the liver indicated the success of the model. Administration: Group ③ was given ZYZ384 100 mg/kg/day by intragastric administration every day. After 3 weeks, the mice were sacrificed, and the livers and spleens were isolated for subsequent analysis and detection. The experimental data were subjected to one-way analysis of variance, p<0.05.
请同时参阅图10和图11:NTG小鼠肝脏取材后,可观察到空白组肝脏形态正常,模型组肝脏严重粘连、皱缩,形状不规则,有弥散性肿块突出;给药组形态相对正常,肿块少。模型组肝脏脾脏重量较空白组增加,用药后重量降低,统计结果如图10所示。HE染色结果显示空白组肝细胞形态完整,细胞内染色蓝色为细胞核,细胞核大而圆,居中,胞质丰富,多呈嗜酸性。模型组肝细胞形态缺失,细胞核异型性明显,胞质着色较深,呈明显嗜碱性。给药组正常细胞与异型细胞共存,细胞核大小不一,细胞质略呈深染,细胞形态多有不同。肝脏组织免疫组化及免疫印迹结果显示SMYD3在模型组高表达,空白及给药组表达量低,统计结果如图11所示。证明所述的ZYZ384有显著抑制肝原位瘤生长作用。Please refer to Figure 10 and Figure 11 at the same time: After harvesting liver materials from NTG mice, it can be observed that the liver morphology of the blank group is normal, the liver of the model group is severely adhesions, shrunken, irregular in shape, and diffuse masses are prominent; the morphology of the drug group is relatively normal , less lumps. The weight of liver and spleen in the model group increased compared with the blank group, and the weight decreased after treatment. The statistical results are shown in Figure 10. HE staining results showed that the liver cells in the blank group had complete morphology, and the blue staining inside the cells was the nucleus. The nucleus was large, round, and centered, and the cytoplasm was rich and mostly eosinophilic. The hepatocyte morphology in the model group was missing, the nucleus was obviously atypia, and the cytoplasm was deeply stained and obviously basophilic. In the administration group, normal cells and atypical cells coexisted. The cell nuclei were of different sizes, the cytoplasm was slightly darkly stained, and the cell morphology was often different. The immunohistochemistry and western blot results of liver tissue showed that SMYD3 was highly expressed in the model group, while the expression level was low in the blank and drug treatment groups. The statistical results are shown in Figure 11. It is proved that ZYZ384 can significantly inhibit the growth of liver tumor in situ.
应当注意,在此所述的实施例仅为本发明的部分实施例,而非本发明的全部实现方式,所述实施例只有示例性,其作用只在于提供理解本发明内容更为直观明了的方式,而不是对本发明所述技术方案的限制。在不脱离本发明构思的前提下,所有本领域普通技术人员没有做出创造性劳动就能想到的其它实施方式,及其它对本发明技术方案的简单替换和各种变化,都属于本发明的保护。It should be noted that the embodiments described here are only some of the embodiments of the present invention, rather than all implementations of the present invention. The embodiments are only illustrative, and their function is only to provide a more intuitive and clear understanding of the content of the present invention. way, rather than limiting the technical solutions described in the present invention. Without departing from the concept of the present invention, all other implementations that those skilled in the art can think of without creative work, as well as other simple replacements and various changes of the technical solutions of the present invention, all belong to the protection of the present invention.
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