CN114004753A - GAN-based low-dose CT (computed tomography) dual-domain combined noise reduction method fusing NDCT noise - Google Patents
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Abstract
The invention provides a low-dose CT (computed tomography) cyclic multi-time noise reduction method fusing NDCT noise based on a GAN (Gate network), which comprises the following steps of S1: constructing low dose CT imagesAnd normal dose CT imageSample set of(ii) a S2: training a network for predicting CT image noise; s3, S4: carrying out primary noise reduction on the LDCT image; s5: removing noise in the NDCT image; s6: training CT images in a time domain and a frequency domain respectively through two generation countermeasure networks (WGANs); s7: optimizing objective functions of two WGANsAnd a better noise reduction effect is obtained. According to the technical scheme, the method mainly comprises two parts, namely, the LDCT is subjected to coarse granularity processing to reduce the burden of the next step; secondly, by utilizing the characteristic that the frequency domain change can separate the detail information and the structure information of the image, the LDCT is further processed with fine granularity by using the dual-domain combined noise reduction, so that the noise reduction effect is improved, and the defects of edge blurring and partial detail loss caused by the noise reduction process are overcome.
Description
Technical Field
The invention relates to the technical field of medical image processing, in particular to a low-dose CT (computed tomography) dual-domain combined noise reduction method based on GAN (generic inverse transform) fusion NDCT noise.
Background
The Computed Tomography (CT) technique is widely used in the medical field, the imaging definition of the method is crucial to the accuracy of clinical diagnosis results, the higher the radiation dose is, the higher the definition of the obtained imaging results is, however, the higher the radiation dose can induce canceration, which has certain damage to human body, in order to avoid or reduce the secondary damage to the patient during examination, the low dose CT (ldct) is considered, however, the CT dose is reduced, and simultaneously, a new problem is generated, namely, the low dose CT has more noise than the ordinary dose CT (ndct), which further affects the result judgment. There is therefore a great deal of interest in using low doses while reducing noise in low dose CT imaging results.
Excellent methods for low-dose CT noise reduction have been proposed in succession, and noise reduction methods are mainly classified into three categories: 1) sinusoidal filtering before reconstruction: 2) performing iterative reconstruction; 3) after the reconstructed image is processed, the methods improve the quality of the image to a certain extent, but have some defects, such as edge blurring, artifact introduction, excessive smoothing and the like. With the development of deep learning, people begin to apply a network model to the noise reduction of CT images. Jelmer M. Woltrink et al propose a method based on generation of a countermeasure network, wherein a generator performs noise reduction on LDCT, and an image close to NDCT can be generated by the generator after training, so that the noise reduction effect is obtained. Peltier et al propose a multi-generator countering network noise reduction model for low-dose CT images, fitting different noise distributions with three different generators, respectively, and finally optimizing by a discriminator. Both of these methods have two disadvantages: 1) only the noise in LDCT is considered, and the noise also existing in NDCT is not considered; 2) partial loss of edge information and detail blurring can be caused after image noise reduction, so that the quality of a CT image is reduced, and later clinical use is not facilitated. These disadvantages limit the effectiveness of the process. The frequency domain change can separate the detail information and the structure information of the image, so that the frequency domain image can better represent the edge information and the detail information of the original image.
Disclosure of Invention
In summary, the noise of NDCT is extracted and removed, and then the NDCT participates in the subsequent GAN training, and the GAN training in the time domain and the frequency domain can show better performance. The Coarse-to-fine denoising method is used in the whole system, Coarse-grained processing is performed firstly to obtain a preliminary denoising effect, burden is relieved for further denoising, fine-grained processing is performed afterwards, and the denoising effect is improved. In order to make up the defects of the prior art, the invention provides a low-dose CT double-domain combined noise reduction method based on GAN fusion NDCT noise.
The invention is realized by the following technical scheme: a low-dose CT double-domain combined noise reduction method based on GAN fusion NDCT noise comprises coarse grain processing and fine grain processing, and is characterized by comprising the following specific steps:
first, coarse size treatment
S1: constructed forSample set for training CT image noise reduction networkWhereinIs a low-dose CT image and is,normal dose CT images;
s2: training a network for predicting CT image noise: a disclosed deep residual convolutional neural network model (DR-CNN) is cited as a network for predicting noise, and the network input isThe output is a predicted residual image (i.e. a noise image) composed ofObtaining; by data setsPerforming supervised learning on the DR-CNN to obtain a trained DR-CNN;
s3: using the trained DR-CNN to carry out primary noise reduction on the LDCT imageInputting the predicted noise image in the trained DR-CNN:
s4: the LDCT is subjected to preliminary noise reduction, and the burden of fine-grained noise reduction treatment is reduced:
second, fine particle size processing
S5: when the NDCT is used as a ground route, the noise in the NDCT still influences the noise reduction result, so the method uses the NDCT after noise reduction as the ground route;
wherein,is composed ofThe noise image predicted by the network,and the result after the NDCT initial noise reduction is used as a fine-grained processed ground route.
S6: because the frequency domain image can better reflect the edge information and the detail information of the original image, the method trains the CT images on the time domain and the frequency domain respectively through two generation countermeasure networks, namely, the dual-domain combined noise reduction is carried out; the method uses the open network model WGANs, each WGAN comprises a generator and a discriminator;
s7 Overall loss function of
Preferably, step S1 includes the steps of:
s1-1, using the Mayo dataset. The data set has 2378 pairs of CT images, i.e., each normal dose CT image has a corresponding low dose CT image.
S1-2: the data set was divided into two parts, with 1902 side CT images as the training set and 476 side CT images as the test set.
Preferably, step S2 includes the steps of:
s2-1: a disclosed deep residual convolutional neural network model (DR-CNN) is cited as a network for predicting noise, and the network input isThe output is a predicted residual image (i.e. a noise image) composed ofObtaining;
the network all using a small convolution kernel, i.e.And the convolution kernel enhances the nonlinearity of the network. The first layer uses Conv + ReLU, the second layer uses Conv + BN + ReLU, and then four bypass connection modules are continuously used, so that in order to avoid serious information loss phenomenon along with the increase of network depth, bypass connection is added in each module, 1 group of convolution kernels are arranged in the last convolution layer, channels are converted into 1 channel, and predicted residual images are output;
s2-2: by data setsThe DR-CNN is trained in the same supervised learning mode of the original network by the constructed sample setMiddle reservationAnd obtaining corresponding residual image by adopting the mode of obtaining residual image by the original methodThereby obtainingA sample set in one-to-one correspondence.
S2-3:As an input image, a picture is taken,and (5) as a group, performing supervised learning on the network to obtain the trained DR-CNN.
Where N is the batch size of the BN layer,is the first in a batchAn input image is input to the image processing device,is prepared by reacting withCorresponding to the second in a batchAn NDCT image, Y being a predicted residual image,is groudtruth.
Preferably, step S5 includes the steps of:
s5-1: the noise in NDCT is first predicted using the preliminary noise-predicted network DR-CNN:
s5-2: the noise is then removed from the NDCT image:
wherein,is composed ofThe noise image predicted by the network,and the result after the NDCT initial noise reduction is used as a fine-grained processed ground route.
Preferably, step S6 includes the steps of:
s6-1: firstly, processing the CT image after the preliminary noise reduction on the time domainInput to the generatorThe method comprises the following steps:(6)
s6-2: will be provided withAs a ground channelInput together discriminatorIs judged by a discriminatorWhether it is true or not:
WhereinAndare respectively generatorsDiscriminatorThe output result of (a) is obtained,is a weighted hyperparameter, set to 10 in the method,for the slave generatorAnd a result of random sampling in an output set of the group truth image, wherein Y is a group truth;
s6-3, using the fft.fft2 () function in numpy packet to convert the data in time domainAndturning to the frequency domain:
whereinFor the purpose of a Fast Fourier Transform (FFT),is composed ofAfter the preliminary noise reduction, the image is transferred to the frequency domain,is composed ofAfter the preliminary noise reduction, transferring to an image on a frequency domain;
s6-4: processing the CT image in the frequency domain with a generation countermeasure network (GAN)Input to the generatorThe method comprises the following steps:
s6-5: will be provided withAs a ground channelInput together discriminatorIs judged by a discriminatorWhether it is true or not:
WhereinAndare respectively generatorsDiscriminatorThe output result of (a) is obtained,for the slave generatorAnd output of grountruth imageAnd (6) giving out the result of random sampling in the set.
Due to the adoption of the technical scheme, compared with the prior art, the invention has the following beneficial effects: the method comprises the steps of firstly predicting the noise of the NDCT at a fine-grained noise reduction part, removing the noise from the NDCT to obtain a noise-reduced NDCT image, and meanwhile inputting the noise-reduced NDCT into a discriminator at a discrimination stage, so that the CT image generated by a generator is better fitted with the noise-reduced NDCT, and a better noise reduction result is achieved; for the low-dose CT noise reduction task, images in a time domain are generally used for training, and the images in the time domain and a frequency domain are used for simultaneously participating in noise reduction, so that the defects of edge blurring and partial detail loss can be overcome in the training process of the frequency domain images while noise reduction is carried out.
Additional aspects and advantages of the invention will be set forth in part in the description which follows, and in part will be obvious from the description, or may be learned by practice of the invention.
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The above and/or additional aspects and advantages of the present invention will become apparent and readily appreciated from the following description of the embodiments, taken in conjunction with the accompanying drawings of which:
fig. 1 is a flow chart of fine-grained noise reduction training.
Detailed Description
In order that the above objects, features and advantages of the present invention can be more clearly understood, a more particular description of the invention will be rendered by reference to the appended drawings. It should be noted that the embodiments and features of the embodiments of the present application may be combined with each other without conflict.
In the following description, numerous specific details are set forth in order to provide a thorough understanding of the present invention, however, the present invention may be practiced otherwise than as specifically described herein, and thus the scope of the present invention is not limited by the specific embodiments disclosed below.
The following describes a GAN-based low-dose CT dual-domain combined denoising method with NDCT noise fusion according to an embodiment of the present invention with reference to fig. 1.
The invention provides a GAN-based NDCT noise-fused low-dose CT double-domain combined noise reduction method, which comprises coarse grain processing and fine grain processing and is characterized by comprising the following specific steps of:
first, coarse size treatment
S1: sample set for training CT image noise reduction networkWhereinIs a low-dose CT image and is,normal dose CT images;
s1-1, using the Mayo dataset. The data set has 2378 pairs of CT images, i.e., each normal dose CT image has a corresponding low dose CT image.
S1-2: the data set was divided into two parts, with 1902 side CT images as the training set and 476 side CT images as the test set.
S2: training a network for predicting CT image noise: a disclosed deep residual convolutional neural network model (DR-CNN) is cited as a network for predicting noise, and the network input isThe output is a predicted residual image (i.e. a noise image) composed ofObtaining; by data setsPerforming supervised learning on the DR-CNN to obtain a trained DR-CNN;
s2-1: a disclosed deep residual convolutional neural network model (DR-CNN) is cited as a network for predicting noise, and the network input isThe output is a predicted residual image (i.e. a noise image) composed ofObtaining;
the network all using a small convolution kernel, i.e.And the convolution kernel enhances the nonlinearity of the network. The first layer uses Conv + ReLU, the second layer uses Conv + BN + ReLU, and then four bypass connection modules are continuously used, so that in order to avoid serious information loss phenomenon along with the increase of network depth, bypass connection is added in each module, 1 group of convolution kernels are arranged in the last convolution layer, channels are converted into 1 channel, and predicted residual images are output;
s2-2: by data setsThe DR-CNN is trained in the same supervised learning mode of the original network by the constructed sample setMiddle reservationAnd obtaining corresponding residual image by adopting the mode of obtaining residual image by the original methodThereby obtainingA sample set in one-to-one correspondence.
S2-3:As an input image, a picture is taken,and (5) as a group, performing supervised learning on the network to obtain the trained DR-CNN.
Where N is the batch size of the BN layer,is the first in a batchAn input image is input to the image processing device,is prepared by reacting withCorresponding to the second in a batchAn NDCT image, Y being a predicted residual image,is groudtruth.
S3: using the trained DR-CNN to carry out primary noise reduction on the LDCT imageInputting the predicted noise image in the trained DR-CNN:
s4: the LDCT is subjected to preliminary noise reduction, and the burden of fine-grained noise reduction treatment is reduced:
second, fine particle size processing
The LDCT cannot obtain satisfactory noise reduction effect after preliminary noise reduction, and needs fine-grained noise reduction processing.
S5: when the NDCT is used as a ground route, the noise in the NDCT still influences the noise reduction result, so the method uses the NDCT after noise reduction as the ground route;
s5-1: the noise in NDCT is first predicted using the preliminary noise-predicted network DR-CNN:
s5-2: the noise is then removed from the NDCT image:
wherein,is composed ofThe noise image predicted by the network,and the result after the NDCT initial noise reduction is used as a fine-grained processed ground route.
S6: because the frequency domain image can better reflect the edge information and the detail information of the original image, the method trains the CT images on the time domain and the frequency domain respectively through two generation countermeasure networks, namely, the dual-domain combined noise reduction is carried out; the method uses the open network model WGANs, each WGAN comprises a generator and a discriminator; as shown in fig. 1.
S6-1: firstly, processing the CT image after the preliminary noise reduction on the time domainInput to the generatorThe method comprises the following steps:
s6-2: will be provided withAs a ground channelInput together discriminatorIs judged by a discriminatorWhether it is true or not:
WhereinAndare respectively generatorsDiscriminatorThe output result of (a) is obtained,is a weighted hyperparameter, set to 10 in the method,for the slave generatorAnd a result of random sampling in an output set of the group truth image, wherein Y is a group truth;
s6-3, using the fft.fft2 () function in numpy packet to convert the data in time domainAndturning to the frequency domain:
whereinFor the purpose of a Fast Fourier Transform (FFT),is composed ofAfter the preliminary noise reduction, the image is transferred to the frequency domain,is composed ofAfter the preliminary noise reduction, transferring to an image on a frequency domain;
s6-4: processing the CT image in the frequency domain with a generation countermeasure network (GAN)Input to the generatorThe method comprises the following steps:
s6-5: will be provided withAs a ground channelInput together discriminatorIs judged by a discriminatorWhether it is true or not:
WhereinAndare respectively generatorsDiscriminatorThe output result of (a) is obtained,for the slave generatorAnd the result of random sampling in the output set of the groudtuth image.
S7 Overall loss function of
And continuous optimization is carried out through training, so that a high-quality CT image is obtained, and a good noise reduction effect is achieved.
In the description of the present invention, the terms "plurality" or "a plurality" refer to two or more, and unless otherwise specifically limited, the terms "upper", "lower", and the like indicate orientations or positional relationships based on the orientations or positional relationships shown in the drawings, and are merely for convenience in describing the present invention and simplifying the description, but do not indicate or imply that the referred device or element must have a specific orientation, be constructed in a specific orientation, and be operated, and thus should not be construed as limiting the present invention; the terms "connected," "mounted," "secured," and the like are to be construed broadly and include, for example, fixed connections, removable connections, or integral connections; may be directly connected or indirectly connected through an intermediate. The specific meanings of the above terms in the present invention can be understood by those skilled in the art according to specific situations.
In the description herein, the description of the terms "one embodiment," "some embodiments," "specific embodiments," etc., means that a particular feature, structure, material, or characteristic described in connection with the embodiment or example is included in at least one embodiment or example of the invention. In this specification, the schematic representations of the terms used above do not necessarily refer to the same embodiment or example. Furthermore, the particular features, structures, materials, or characteristics described may be combined in any suitable manner in any one or more embodiments or examples.
The above is only a preferred embodiment of the present invention, and is not intended to limit the present invention, and various modifications and changes will occur to those skilled in the art. Any modification, equivalent replacement, or improvement made within the spirit and principle of the present invention should be included in the protection scope of the present invention.
Claims (5)
1. A low-dose CT double-domain combined noise reduction method based on GAN fusion NDCT noise comprises coarse grain processing and fine grain processing, and is characterized by comprising the following specific steps:
first, coarse size treatment
S1: sample set for training CT image noise reduction networkWhereinIs a low-dose CT image and is,normal dose CT images;
s2: training predicted CT mapsNetwork like noise: a disclosed deep residual convolutional neural network model (DR-CNN) is cited as a network for predicting noise, and the network input isThe output is a predicted residual image (i.e. a noise image) composed ofObtaining; by data setsPerforming supervised learning on the DR-CNN to obtain a trained DR-CNN;
s3: using the trained DR-CNN to carry out primary noise reduction on the LDCT imageInputting the predicted noise image in the trained DR-CNN:
s4: the LDCT is subjected to preliminary noise reduction, and the burden of fine-grained noise reduction treatment is reduced:
second, fine particle size processing
S5: when the NDCT is used as a ground route, the noise in the NDCT still influences the noise reduction result, so the method uses the NDCT after noise reduction as the ground route;
wherein,is composed ofThe noise image predicted by the network,taking the result of NDCT after preliminary noise reduction as a fine-grained processed ground route;
s6: because the frequency domain image can better reflect the edge information and the detail information of the original image, the method trains the CT images on the time domain and the frequency domain respectively through two generation countermeasure networks, namely, the dual-domain combined noise reduction is carried out; the method uses the open network model WGANs, each WGAN comprises a generator and a discriminator;
s7 Overall loss function of
2. The method according to claim 1, wherein the step S1 comprises the steps of:
s1-1, using a Mayo data set; the data set has 2378 pairs of CT images, i.e., each normal dose CT image has a corresponding low dose CT image;
s1-2: the data set was divided into two parts, with 1902 side CT images as the training set and 476 side CT images as the test set.
3. The method according to claim 1, wherein the step S2 comprises the steps of:
s2-1: a disclosed deep residual convolutional neural network model (DR-CNN) is cited as a network for predicting noise, and the network input isThe output is a predicted residual image (i.e. a noise image) composed ofObtaining;
the network all using a small convolution kernel, i.e.A convolution kernel enhances the nonlinearity of the network; the first layer uses Conv + ReLU, the second layer uses Conv + BN + ReLU, and then four bypass connection modules are continuously used, so that in order to avoid serious information loss phenomenon along with the increase of network depth, bypass connection is added in each module, 1 group of convolution kernels are arranged in the last convolution layer, channels are converted into 1 channel, and predicted residual images are output;
s2-2: by data sets The DR-CNN is trained in the same supervised learning mode of the original network by the constructed sample setMiddle reservationAnd obtaining corresponding residual image by adopting the mode of obtaining residual image by the original methodThereby obtainingA sample set corresponding to each other;
S2-3:as an input image, a picture is taken,as a group, performing supervised learning on the network to obtain a trained DR-CNN;
4. The method according to claim 1, wherein the step S5 comprises the steps of:
s5-1: the noise in NDCT is first predicted using the preliminary noise-predicted network DR-CNN:
s5-2: the noise is then removed from the NDCT image:
5. The method according to claim 1, wherein the step S6 comprises the steps of:
s6-1: firstly, processing the CT image after the preliminary noise reduction on the time domainInput to the generatorThe method comprises the following steps:(6)
s6-2: will be provided withAs a ground channelInput together discriminatorIs judged by a discriminatorWhether it is true or not:
WhereinAndare respectively generatorsDiscriminatorThe output result of (a) is obtained,is a weighted hyperparameter, set to 10 in the method,for the slave generatorAnd a result of random sampling in an output set of the group truth image, wherein Y is a group truth;
s6-3, using the fft.fft2 () function in numpy packet to convert the data in time domainAndturning to the frequency domain:
whereinFor the purpose of a Fast Fourier Transform (FFT),is composed ofAfter the preliminary noise reduction, the image is transferred to the frequency domain,is composed ofAfter the preliminary noise reduction, transferring to an image on a frequency domain;
s6-4: processing the CT image in the frequency domain with a generation countermeasure network (GAN)Input to the generatorThe method comprises the following steps:
s6-5: will be provided withAs a ground channelInput together discriminatorIs judged by a discriminatorWhether it is true or not:
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