CN113990495A - Disease diagnosis prediction system based on graph neural network - Google Patents
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Abstract
The invention discloses a disease diagnosis prediction system based on a graph neural network, which comprises a knowledge map construction module, a data extraction and preprocessing module, a disease diagnosis model construction module and a disease diagnosis model application module. The invention effectively integrates expert knowledge and electronic medical record data in the knowledge map and constructs the heteromorphic graph network. On the heteromorphic graph network, local information and global information of the heteromorphic graph network are learned by utilizing a graph convolution neural network method. The disease diagnosis model can train the knowledge and data end to end simultaneously. In the model optimization target, besides the disease prediction task, supervision information on the knowledge relationship is added, so that the disease prediction task can effectively utilize knowledge, and the knowledge representation is not influenced by data noise. Aiming at the problems that the number of predicted diseases is large and the number of patients corresponding to part of the diseases is limited, multi-label hierarchical classification is designed for improving the prediction effect of few-sample class diseases.
Description
Technical Field
The invention belongs to the technical field of medical health information, and particularly relates to a disease diagnosis and prediction system based on a graph neural network.
Background
In the field of medical care, a plurality of knowledge maps with good organization, such as international disease classification, drug Bank, clinical guidelines and consensus, and the like, have hierarchical information and complex association relationship which accord with human cognition. A knowledge graph is a heterogeneous graph network that contains a variety of relationships. How to simultaneously utilize expert knowledge and electronic medical record data in the knowledge map and integrate the knowledge and the data for modeling has an important role in disease diagnosis and prediction.
The existing method for predicting diseases based on a graph neural network model lacks a method for effectively fusing a medical knowledge graph and electronic medical record data to construct a heteromorphic graph network. The main methods at present are as follows: (1) data-based graphical network modeling: constructing a graph network based on the electronic medical record data, and predicting diseases by utilizing a graph neural network model; the method does not fully utilize existing sources of medical knowledge. (2) Knowledge representation learning and disease prediction staged modeling approach: performing expression learning on the medical knowledge map to obtain vector expression of knowledge, and then integrating the vector expression into electronic medical record data to perform disease prediction; the staged training approach does not yield a knowledge representation that is best suited for disease prediction. (3) End-to-end modeling methods that focus only on disease prediction tasks: fusing medical knowledge maps and electronic medical record data, constructing a heteromorphic graph network, and predicting diseases by utilizing a graph neural network model; although the method solves the defects existing in the two methods, the learned knowledge representation is possibly influenced by noise in data because the model only optimizes the disease prediction task.
Disclosure of Invention
Aiming at the defects of the prior art, the invention provides a disease diagnosis and prediction system based on a graph neural network.
The purpose of the invention is realized by the following technical scheme: a graphical neural network based disease diagnosis prediction system, the system comprising:
(1) a knowledge graph construction module: constructing a disease-symptom knowledge map based on the medical knowledge source;
(2) the data extraction and pretreatment module: extracting electronic medical record data of a patient from the electronic medical record system, wherein the electronic medical record data comprises disease diagnosis and symptom data of the patient and is stored in a triple form;
(3) the disease diagnosis model building module: performing graph neural network learning and predictive modeling on disease-symptom knowledge maps and electronic medical record data, comprising:
constructing a heterogeneous graph network, wherein the heterogeneous graph network comprises a disease-symptom subgraph constructed by extracting disease-symptom relations from a disease-symptom knowledge graph and a patient-symptom subgraph constructed by utilizing patient disease diagnosis and symptom data in a triple form;
constructing a disease diagnosis model, wherein the disease diagnosis model consists of a graph encoder and a graph decoder;
the graph encoder is realized on the basis of a graph convolution neural network, the input of the graph encoder is node initial embedded representation of diseases, symptoms and patients obtained by utilizing a disease-symptom co-occurrence matrix, a disease-symptom adjacent matrix and a patient-symptom adjacent matrix, different types of nodes transmit information through connecting edges, the node embedded representation of the diseases, the symptoms and the patients is obtained through node embedded representation updating operation, and the graph encoder is input;
the graph decoder performs multi-task learning using node-embedded representations, including three parts:
a) multi-label hierarchical classification of patient disease diagnosis prognosis: constructing a disease hierarchical relation by using a disease hierarchical structure, wherein the disease hierarchical relation comprises a disease layer needing diagnosis and prediction and a disease system classification layer obtained according to medical knowledge; constructing a multi-label hierarchical classifier, and designing a loss function of the multi-label hierarchical classification;
b) disease comparison and learning: constructing a disease pair system category discriminator, calculating the distance between two diseases in a disease pair, and designing a loss function for disease comparison learning;
c) disease-symptom relationship learning: constructing a disease-symptom relation learning device, calculating the probability of the incidence relation between the disease and the symptom in the disease-symptom pair, and designing a loss function for the disease-symptom relation learning;
adding the loss function of the multi-label hierarchical classification, the loss function of the disease contrast learning and the loss function of the disease-symptom relation learning to obtain a loss function of a disease diagnosis model;
(4) disease diagnosis model application module: and (4) performing disease diagnosis prediction on the input symptoms of the new patient by using the disease diagnosis model.
Further, in the knowledge graph building module, the disease-symptom knowledge graph comprises a disease, a symptom two node type and a disease-symptom one relation.
Further, the heteromorphic graph network is constructed based on a disease-symptom knowledge graph and electronic medical record data and comprises three node types of diseases, symptoms and patients, wherein the symptoms are intermediate nodes connected between the diseases and the patients, and the heteromorphic graph network integrates relationship subgraphs related to the diseases and the symptoms in the disease-symptom knowledge graph and relationship subgraphs related to the patients and the symptoms in the electronic medical record data.
wherein the node setD, S, P are the disease set, symptom set, and patient set, respectively,,,,、、respectively representing the disease type, symptom type and patient number; edge set,,、Respectively, a disease-symptom relationship stored in a disease-symptom adjacency matrix and a patient-symptom relationship stored in a patient-symptom adjacency matrix.
Further, the generating of the node initial embedded representation comprises:
construction of disease-symptom co-occurrence matricesMatrix ofTo (1) aLine and firstIs listed asIndicating a diagnosis of a disease in electronic medical record dataIn patients in whom symptoms appearThe number of (2);
wherein the content of the first and second substances,for the patientThe number of symptoms of (a).
Further, the initial embedded representations of different types of nodes are respectively input into a multi-layer perceptron to obtain the initial embedded representations of the same dimension, and then input into a graph encoder.
Further, in the picture encoder, for diseasesOf 1 atNode-embedded representation of a layerThe calculation formula is as follows:
wherein the content of the first and second substances,is the function of the activation of the function,、are respectively the firstA disease-symptom associated weight matrix and a patient-symptom associated weight matrix obtained by training a layer disease diagnosis model;are respectively diseasesSymptoms ofAnd the patientIn the first placeA node-embedded representation of a layer;indicating a diseaseA set of adjacent symptom nodes is provided,indicating symptomsA set of adjacent disease nodes, wherein the disease nodes are selected,indicating symptomsA set of adjacent patient nodes that are,representing the patientA set of adjacent symptom nodes.
Further, in the graphical decoder, the multi-label hierarchical classification of the patient disease diagnosis prediction comprises:
constructing disease hierarchy relationship, and recording the disease types of disease layersDisease System Classification level,,Number of disease system classifications;
construction of a container containingA multi-label level classifier of a plurality of classifiers,a two classifiers as,,(ii) a The patient is treatedNode-embedded representation of respective inputsA two classifiers to obtainA prediction probability, isTherein, two classifiersThe corresponding label classifies the disease system of the patient; two-classifierThe corresponding label is the disease diagnosis of the patient and the corresponding model parameters are;
Calculating the patientThe appearance of diseaseProbability of (2)Wherein, in the step (A),,is a classifier of twoPredicting the presence of disease in a patientThe probability of (d); hypothesis of diseaseIs classified into,Is a classifier of twoPredicting whether a patient presents with a systemic classification of diseaseThe probability of (d);
wherein the content of the first and second substances,for the patientThe appearance of diseaseThe real label of (a) is,for the patientThe disease diagnosis of (a) corresponds to a true label of a disease system classification,the norm of L1 is shown,for diseaseAnd diseaseThe similarity between the two is calculated according to the following formula:
wherein the content of the first and second substances,respectively indicate diseasesAnd diseaseThe distribution of the real label of (a) is,,andrespectively represent the patientsThe appearance of diseaseAnd diseaseThe real tag of (1).
Further, in the image decoder, the disease contrast learning includes:
combining the diseases in the disease set D in pairs to obtain a disease pair set DD with the number of disease pairs(ii) a Any disease pair in pair DDDisease pair tags if two diseases belong to the same phylogenetic classificationIf the two diseases belong to different phylogenetic classes, then;
Construction of disease-to-System class Distinguishing deviceTo treat diseasesNode-embedded representation of two diseasesInput deviceIn (1), calculating the distance between two diseases:
wherein the content of the first and second substances,mlower bounds on the distance between representations are embedded for different disease system classes.
Further, in the graph encoder, the disease-symptom relationship learning includes:
selecting a disease and a symptom from the disease set D and the symptom set S respectively to obtain a disease-symptom pair set DS, wherein the number of the disease-symptom pairs is(ii) a For any disease-symptom pair in DSDisease-symptom pair labels if there is a relationship between the disease-symptom in the disease-symptom knowledge mapIf no association exists, then;
Construction of disease-symptom relationship learnerWill beNode-embedded representation of diseases and symptoms in (1)Input deviceIn, calculateThe probability of the disease being associated with the symptoms:
the invention has the beneficial effects that: the invention effectively integrates expert knowledge and electronic medical record data in the knowledge map and constructs the heteromorphic graph network. On the heteromorphic graph network, local information and global information of the heteromorphic graph network are learned by utilizing a graph convolution neural network method. The disease diagnosis model can train the knowledge and data end to end simultaneously. In the model optimization target, besides the disease prediction task, supervision information (a disease comparison learning part and a disease-symptom relationship learning part) on the knowledge relationship is added, so that the disease prediction task can effectively utilize knowledge, and the knowledge representation is not influenced by data noise. Aiming at the problems that the number of predicted diseases is large and the number of patients corresponding to part of the diseases is limited, multi-label hierarchical classification is designed for improving the prediction effect of few-sample class diseases.
Drawings
FIG. 1 is a diagram of a disease diagnosis and prognosis system based on a graph neural network according to an embodiment of the present invention;
fig. 2 is a diagram of a heterogeneous graph network structure according to an embodiment of the present invention;
FIG. 3 is a diagram of a disease diagnosis model according to an embodiment of the present invention;
FIG. 4 is a schematic diagram of a disease hierarchy provided by an embodiment of the present invention.
Detailed Description
In order to make the aforementioned objects, features and advantages of the present invention comprehensible, embodiments accompanied with figures are described in detail below.
In the following description, numerous specific details are set forth in order to provide a thorough understanding of the present invention, but the present invention may be practiced in other ways than those specifically described and will be readily apparent to those of ordinary skill in the art without departing from the spirit of the present invention, and therefore the present invention is not limited to the specific embodiments disclosed below.
The embodiment of the invention provides a disease diagnosis and prediction system based on a graph neural network, which comprises a knowledge graph construction module, a data extraction and preprocessing module, a disease diagnosis model construction module and a disease diagnosis model application module, wherein the implementation process of each module is explained in detail below, as shown in fig. 1.
A knowledge graph construction module: the disease-symptom knowledge map is constructed based on SNOMED-CT, HPO and other medical knowledge sources, and comprises two node types of diseases and symptoms and a relation between the diseases and the symptoms.
The data extraction and pretreatment module: electronic medical record data of the patient, including disease diagnosis and symptom data of the patient, are extracted from the electronic medical record system and stored in a triple form.
The disease diagnosis model building module: and (4) carrying out graph neural network learning and prediction modeling on the disease-symptom knowledge graph and the electronic medical record data.
Disease diagnosis model application module: and (4) performing disease diagnosis prediction on the input symptoms of the new patient by using the disease diagnosis model.
The disease diagnosis model building module has the specific functions of: set of given diseasesAnd the symptom setAnd the patient setWherein, in the step (A), 、 、 respectively, the disease type, symptom type and patient number. Disease diagnosis prediction is considered to be a multi-label classification problem, i.e. a disease diagnosis model is able to predict a disease diagnosis for a patient given the patient's symptoms.
The implementation of the disease diagnosis model comprises:
(1) heterogeneous graph network construction
Constructing a heterogeneous graph network containing three node types of diseases, symptoms and patients by using a disease-symptom knowledge graph and electronic medical record dataWherein the symptom is an intermediate node connecting between the disease and the patient. The heterogeneous graph network integrates the relationship subgraphs related to diseases and symptoms in a disease-symptom knowledge graph and the relationship subgraphs related to patients and symptoms in electronic medical record data, including the disease-symptom subgraphsAnd patient-symptom subgraph。
wherein the node setEdge set,, 、 Respectively, a disease-symptom relationship and a patient-symptom relationship, the disease-symptom relationship being stored in a disease-symptom adjacency matrix and the patient-symptom relationship being stored in a patient-symptom adjacency matrix.
FIG. 2 is an example of a heterogeneous graph network architecture including 4 patients4 kinds of diseases4 symptomsAnd patient-symptom relationships, disease-symptom relationships.
(2) Subgraph construction
Disease-symptom subgraph: and extracting the disease-symptom relationship from the disease-symptom knowledge map to construct a disease-symptom subgraph.
Patient-symptom subgraph: patient-symptom sub-graphs are constructed using patient disease diagnosis and symptom data in a ternary format.
(3) Disease diagnosis model structure
Fig. 3 is a structural example of a disease diagnosis model. And obtaining node initial embedded representation of the disease, symptom and patient by using the disease-symptom co-occurrence matrix. The node initial embedded representation and adjacency matrix are used as inputs to a disease diagnosis model. The disease diagnosis model is composed of a graph encoder and a graph decoder. The specific steps of the generation of the node initial embedded representation, the graph encoder and the graph decoder are seen in (4) - (6).
(4) Generation of an initial embedded representation of a node
First, a disease-symptom co-occurrence matrix is constructedMatrix ofTo (1) aLine and firstIs listed asIndicating a diagnosis of a disease in electronic medical record dataIn patients of (1), symptoms appearThe number of the cells. Then, toPerforming row normalization to obtainDisease ofIs expressed asI.e. byTo (1) aA row; to pairPerforming column normalization to obtainSymptoms ofIs expressed asI.e. byTo (1) aAnd (4) columns. Then, the patient is calculatedInitial embedded representation ofThe calculation formula is as follows:
wherein the content of the first and second substances,for the patientThe number of symptoms of (a).
(5) Picture coder
Firstly, the initial embedded representations of different types of nodes are respectively input into a multi-layer perceptron to obtain the initial embedded representations of the same dimension, and then the initial embedded representations are input into a graph encoder. The graph encoder is implemented based on a graph convolution neural network.
In the graph encoder, different types of nodes can transmit information through connecting edges in the graph to integrate information of other types of nodes. For diseasesOf 1 atNode-embedded representation of a layerThe calculation formula is as follows:
wherein the content of the first and second substances,is the function of the activation of the function,、are respectively the firstA disease-symptom associated weight matrix and a patient-symptom associated weight matrix obtained by training a layer disease diagnosis model;are disease nodes respectivelySymptom nodePatient nodeIn the first placeNode-embedded representation of layers, the total number of layers of the graph encoder being。Representing disease nodesA set of adjacent symptom nodes is provided,node representing symptomA set of adjacent disease nodes, wherein the disease nodes are selected,node representing symptomA set of adjacent patient nodes that are,representing patient nodesA set of adjacent symptom nodes.、Obtained by a disease-symptom adjacency matrix,、obtained by the patient-symptom adjacency matrix. By repeatedly performing the above-described node-embedded representation update operationNext, a disease, symptom, and patient node embedded representation that can sufficiently capture the association relationship is obtained.
(6) Graphic decoder
The nodes derived by the graph encoder are embedded in a representation input graph encoder. In the graph decoder, multi-task learning is performed using node-embedded representations.
First, multi-label hierarchical classification of patient disease diagnosis prognosis is performed.
First, a disease hierarchical relationship is constructed using a hierarchical structure of diseases, as shown in fig. 4. Wherein the content of the first and second substances,the layer is the disease in the disease set D, i.e., the disease to be diagnosed and predicted, and the disease type is as described above;Layers are a systematic classification of diseases based on medical knowledge, denoted,Is composed ofNumber of disease system classifications for a layer.
Next, constructing a structure comprisingA multi-label level classifier of a plurality of classifiers,a two classifiers as,. The patient is treatedNode-embedded representation of respective inputsA two classifiers to obtainA prediction probability, is. Wherein the content of the first and second substances,sorterThe corresponding label classifies the disease system of the patient; classifierThe corresponding label is the disease diagnosis of the patient and the corresponding model parameters are。
Then, the patient is calculatedThe appearance of diseaseProbability of (2)Wherein, in the step (A),,for a classifierPredicting the presence of disease in a patientThe probability of (d); hypothesis of diseaseIs classified into,For a classifierPredicting whether a patient presents with a systemic classification of diseaseThe probability of (c).
Finally, a loss function of multi-label hierarchical classification is calculatedThe formula is as follows:
wherein the content of the first and second substances,for the patientThe appearance of diseaseThe real label of (a) is,for the patientThe disease diagnosis of (a) corresponds to a true label of the systematic classification,the norm of L1 is shown,for diseaseAnd diseaseThe similarity between the two is calculated according to the following formula:
wherein the content of the first and second substances,respectively indicate diseasesAnd diseaseThe distribution of the real label of (a) is,,andrespectively represent the patientsThe appearance of diseaseAnd diseaseThe real tag of (1).
Second, disease contrast learning is performed.
Firstly, combining the diseases in the disease set D in pairs to obtain a disease pair set DD, wherein the number of the disease pairs is. Any disease pair in pair DDDisease pair tags if two diseases belong to the same phylogenetic classificationIf the two diseases belong to different phylogenetic classes, then。
Then, a disease-to-system type discriminator is constructed. Will be ill toNode-embedded representation of two diseasesInput deviceIn (1), calculating the distance between two diseases:
wherein the content of the first and second substances,mlower bounds on the distance between representations are embedded for different disease system classes.
Thirdly, learning of disease-symptom relationships is performed.
Firstly, a disease and a symptom are respectively selected from a disease set D and a symptom set S to obtain a disease-symptom pair set DS, and the number of the disease-symptom pairs is. For any disease-symptom pair in DSIf the disease-symptom is associated in the disease-symptom knowledge map, the disease-symptom pair labelIf no association exists, then。
Then, a disease-symptom relationship learning device is constructedWill beNode-embedded representation of diseases and symptoms in (1)Input deviceIn (1), calculating disease-symptom pairsThe probability of the disease being associated with the symptoms:
Finally, a loss function for learning disease-symptom relationship is calculatedThe formula is as follows:
the foregoing is only a preferred embodiment of the present invention, and although the present invention has been disclosed in the preferred embodiments, it is not intended to limit the present invention. Those skilled in the art can make numerous possible variations and modifications to the present teachings, or modify equivalent embodiments to equivalent variations, without departing from the scope of the present teachings, using the methods and techniques disclosed above. Therefore, any simple modification, equivalent change and modification made to the above embodiments according to the technical essence of the present invention are still within the scope of the protection of the technical solution of the present invention, unless the contents of the technical solution of the present invention are departed.
Claims (10)
1. A disease diagnosis prediction system based on a graph neural network, comprising:
(1) a knowledge graph construction module: constructing a disease-symptom knowledge map based on the medical knowledge source;
(2) the data extraction and pretreatment module: extracting electronic medical record data of a patient from the electronic medical record system, wherein the electronic medical record data comprises disease diagnosis and symptom data of the patient and is stored in a triple form;
(3) the disease diagnosis model building module: performing graph neural network learning and predictive modeling on disease-symptom knowledge maps and electronic medical record data, comprising:
constructing a heterogeneous graph network, wherein the heterogeneous graph network comprises a disease-symptom subgraph constructed by extracting disease-symptom relations from a disease-symptom knowledge graph and a patient-symptom subgraph constructed by utilizing patient disease diagnosis and symptom data in a triple form;
constructing a disease diagnosis model, wherein the disease diagnosis model consists of a graph encoder and a graph decoder;
the graph encoder is realized on the basis of a graph convolution neural network, the input of the graph encoder is node initial embedded representation of diseases, symptoms and patients obtained by utilizing a disease-symptom co-occurrence matrix, a disease-symptom adjacent matrix and a patient-symptom adjacent matrix, different types of nodes transmit information through connecting edges, the node embedded representation of the diseases, the symptoms and the patients is obtained through node embedded representation updating operation, and the graph encoder is input;
the graph decoder performs multi-task learning using node-embedded representations, including three parts:
a) multi-label hierarchical classification of patient disease diagnosis prognosis: constructing a disease hierarchical relation by using a disease hierarchical structure, wherein the disease hierarchical relation comprises a disease layer needing diagnosis and prediction and a disease system classification layer obtained according to medical knowledge; constructing a multi-label hierarchical classifier, and designing a loss function of the multi-label hierarchical classification;
b) disease comparison and learning: constructing a disease pair system category discriminator, calculating the distance between two diseases in a disease pair, and designing a loss function for disease comparison learning;
c) disease-symptom relationship learning: constructing a disease-symptom relation learning device, calculating the probability of the incidence relation between the disease and the symptom in the disease-symptom pair, and designing a loss function for the disease-symptom relation learning;
adding the loss function of the multi-label hierarchical classification, the loss function of the disease contrast learning and the loss function of the disease-symptom relation learning to obtain a loss function of a disease diagnosis model;
(4) disease diagnosis model application module: and (4) performing disease diagnosis prediction on the input symptoms of the new patient by using the disease diagnosis model.
2. The graph neural network-based disease diagnosis prediction system of claim 1, wherein in the knowledge-graph building module, the disease-symptom knowledge graph comprises a relationship between disease, symptom two node types and disease-symptom.
3. The system of claim 1, wherein the heteromorphic graph network is constructed based on a disease-symptom knowledge graph and electronic medical record data, and comprises three node types of disease, symptom and patient, wherein symptom is an intermediate node connected between disease and patient, and the heteromorphic graph network integrates a relationship subgraph related to disease and symptom in the disease-symptom knowledge graph and a relationship subgraph related to patient and symptom in the electronic medical record data.
4. The graphical neural network-based disease diagnosis prediction system of claim 1, wherein the heteromorphic graph networkExpressed as:
wherein the node setD, S, P are the disease set, symptom set, and patient set, respectively,,,,、、respectively representing the disease type, symptom type and patient number; edge set,,、Respectively, a disease-symptom relationship stored in a disease-symptom adjacency matrix and a patient-symptom relationship stored in a patient-symptom adjacency matrix.
5. The graph neural network-based disease diagnosis prediction system of claim 4, wherein the generation of the node initial embedded representation comprises:
construction of disease-symptom co-occurrence matricesMatrix ofTo (1) aLine and firstIs listed asIndicating a diagnosis of a disease in electronic medical record dataIn patients in whom symptoms appearThe number of (2);
6. The disease diagnosis prediction system based on graph neural network of claim 1, wherein different types of node initial embedded representations are inputted into a multi-layer perceptron respectively, and the initial embedded representations with the same dimension are inputted into the graph encoder.
7. The graph neural network-based disease diagnosis prediction system of claim 5, wherein the graph encoder is configured to predict diseaseOf 1 atNode-embedded representation of a layerThe calculation formula is as follows:
wherein the content of the first and second substances,is the function of the activation of the function,、are respectively the firstA disease-symptom associated weight matrix and a patient-symptom associated weight matrix obtained by training a layer disease diagnosis model;are respectively diseasesSymptoms ofAnd the patientIn the first placeA node-embedded representation of a layer;indicating a diseaseA set of adjacent symptom nodes is provided,indicating symptomsA set of adjacent disease nodes, wherein the disease nodes are selected,indicating symptomsA set of adjacent patient nodes that are,representing the patientA set of adjacent symptom nodes.
8. The neural network based disease diagnosis prediction system of claim 7, wherein the multi-label hierarchical classification of the patient disease diagnosis prediction in the graph encoder comprises:
constructing disease hierarchy relationship, and recording the disease types of disease layersDisease System Classification level,,Number of disease system classifications;
construction of a container containingA multi-label level classifier of a plurality of classifiers,a two classifiers as,,(ii) a The patient is treatedNode-embedded representation of respective inputsA two classifiers to obtainA prediction probability, isTherein, two classifiersThe corresponding label classifies the disease system of the patient; two-classifierThe corresponding label is the disease diagnosis of the patient and the corresponding model parameters are;
Calculating the patientThe appearance of diseaseProbability of (2)Wherein, in the step (A),,is a classifier of twoPredicting the presence of disease in a patientThe probability of (d); hypothesis of diseaseIs classified into,Is a classifier of twoPredicting whether a patient presents with a systemic classification of diseaseThe probability of (d);
wherein the content of the first and second substances,for the patientThe appearance of diseaseThe real label of (a) is,for the patientThe disease diagnosis of (a) corresponds to a true label of a disease system classification,the norm of L1 is shown,for diseaseAnd diseaseThe similarity between the two is calculated according to the following formula:
9. The neural network based disease diagnosis prediction system of claim 7, wherein in the graph decoder, the disease contrast learning comprises:
combining the diseases in the disease set D in pairs to obtain a disease pair set DD with the number of disease pairs(ii) a Any disease pair in pair DDDisease pair tags if two diseases belong to the same phylogenetic classificationIf the two diseases belong to different phylogenetic classes, then;
Construction of disease-to-System class Distinguishing deviceTo treat diseasesNode-embedded representation of two diseasesInput deviceIn (1), calculating the distance between two diseases:
wherein the content of the first and second substances,mlower bounds on the distance between representations are embedded for different disease system classes.
10. The graph neural network-based disease diagnosis prediction system of claim 7, wherein in the graph encoder, the disease-symptom relationship learning comprises:
selecting a disease and a symptom from the disease set D and the symptom set S respectively to obtain a disease-symptom pair set DS, wherein the number of the disease-symptom pairs is(ii) a For any disease-symptom pair in DSDisease-symptom pair labels if there is a relationship between the disease-symptom in the disease-symptom knowledge mapIf no association exists, then;
Construction of disease-symptom relationship learnerWill beNode-embedded representation of diseases and symptoms in (1)Input deviceIn, calculateThe probability of the disease being associated with the symptoms:
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