CN113454727A - 生物序列信息处理 - Google Patents

生物序列信息处理 Download PDF

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Publication number
CN113454727A
CN113454727A CN202080015463.9A CN202080015463A CN113454727A CN 113454727 A CN113454727 A CN 113454727A CN 202080015463 A CN202080015463 A CN 202080015463A CN 113454727 A CN113454727 A CN 113454727A
Authority
CN
China
Prior art keywords
biological
sequence
repository
processed
subsequence
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Pending
Application number
CN202080015463.9A
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English (en)
Chinese (zh)
Inventor
D·范海夫特
A·范海夫特
I·布兰兹
E·范海夫特
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Biokey Co
Original Assignee
Biokey Co
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Priority claimed from EP19156085.3A external-priority patent/EP3693970A1/fr
Priority claimed from BE20195077A external-priority patent/BE1027035B1/nl
Application filed by Biokey Co filed Critical Biokey Co
Publication of CN113454727A publication Critical patent/CN113454727A/zh
Pending legal-status Critical Current

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    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G16B30/10—Sequence alignment; Homology search
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B15/00—ICT specially adapted for analysing two-dimensional or three-dimensional molecular structures, e.g. structural or functional relations or structure alignment
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • G16B20/20—Allele or variant detection, e.g. single nucleotide polymorphism [SNP] detection
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G16B30/20—Sequence assembly
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • G16B50/10—Ontologies; Annotations
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • G16B50/30—Data warehousing; Computing architectures
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • G16B50/50—Compression of genetic data
CN202080015463.9A 2019-02-07 2020-02-07 生物序列信息处理 Pending CN113454727A (zh)

Applications Claiming Priority (7)

Application Number Priority Date Filing Date Title
EP19156085.3A EP3693970A1 (fr) 2019-02-07 2019-02-07 Gestion d'informations de séquence biologique
BE20195077A BE1027035B1 (nl) 2019-02-07 2019-02-07 Depot van vingerafdruk-datastrings
BEBE2019/5077 2019-02-07
EP19156085.3 2019-02-07
EP19190899.5 2019-08-08
EP19190899 2019-08-08
PCT/EP2020/053220 WO2020161344A1 (fr) 2019-02-07 2020-02-07 Manipulation d'informations de séquence biologique

Publications (1)

Publication Number Publication Date
CN113454727A true CN113454727A (zh) 2021-09-28

Family

ID=69570650

Family Applications (1)

Application Number Title Priority Date Filing Date
CN202080015463.9A Pending CN113454727A (zh) 2019-02-07 2020-02-07 生物序列信息处理

Country Status (10)

Country Link
US (1) US20220199199A1 (fr)
EP (2) EP3881326B1 (fr)
JP (1) JP7352985B2 (fr)
KR (1) KR102614401B1 (fr)
CN (1) CN113454727A (fr)
AU (1) AU2020218104B2 (fr)
CA (1) CA3129108C (fr)
IL (1) IL285393A (fr)
WO (1) WO2020161344A1 (fr)
ZA (1) ZA202106380B (fr)

Family Cites Families (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20060020397A1 (en) * 2004-07-21 2006-01-26 Kermani Bahram G Methods for nucleic acid and polypeptide similarity search employing content addressable memories
JP5247009B2 (ja) * 2006-06-16 2013-07-24 独立行政法人理化学研究所 配列抽出装置、配列抽出方法、プログラムおよび記録媒体
US20140089328A1 (en) 2012-09-27 2014-03-27 International Business Machines Corporation Association of data to a biological sequence
JP6198659B2 (ja) * 2014-04-03 2017-09-20 株式会社日立ハイテクノロジーズ 配列データ解析装置、ｄｎａ解析システムおよび配列データ解析方法

Also Published As

Publication number Publication date
WO2020161344A1 (fr) 2020-08-13
KR20210126031A (ko) 2021-10-19
US20220199199A1 (en) 2022-06-23
EP3881326A1 (fr) 2021-09-22
KR102614401B1 (ko) 2023-12-14
EP4250300A3 (fr) 2023-12-06
EP3881326B1 (fr) 2023-04-05
AU2020218104A1 (en) 2021-08-12
IL285393A (en) 2021-09-30
JP7352985B2 (ja) 2023-09-29
CA3129108A1 (fr) 2020-08-13
CA3129108C (fr) 2023-09-05
ZA202106380B (en) 2023-08-30
EP4250300A2 (fr) 2023-09-27
AU2020218104B2 (en) 2024-03-28
JP2022519786A (ja) 2022-03-24

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