CN113121551A - Metabolite of streptomyces pyroxyli and application - Google Patents

Metabolite of streptomyces pyroxyli and application Download PDF

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CN113121551A
CN113121551A CN202110266669.5A CN202110266669A CN113121551A CN 113121551 A CN113121551 A CN 113121551A CN 202110266669 A CN202110266669 A CN 202110266669A CN 113121551 A CN113121551 A CN 113121551A
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streptomyces
culture medium
methanol
alkaloid compound
crude extract
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吴菲
张应烙
黄忠迪
尹彩萍
操玮
李前航
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Anhui Agricultural University AHAU
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    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D491/00Heterocyclic compounds containing in the condensed ring system both one or more rings having oxygen atoms as the only ring hetero atoms and one or more rings having nitrogen atoms as the only ring hetero atoms, not provided for by groups C07D451/00 - C07D459/00, C07D463/00, C07D477/00 or C07D489/00
    • C07D491/12Heterocyclic compounds containing in the condensed ring system both one or more rings having oxygen atoms as the only ring hetero atoms and one or more rings having nitrogen atoms as the only ring hetero atoms, not provided for by groups C07D451/00 - C07D459/00, C07D463/00, C07D477/00 or C07D489/00 in which the condensed system contains three hetero rings
    • C07D491/14Ortho-condensed systems
    • C07D491/147Ortho-condensed systems the condensed system containing one ring with oxygen as ring hetero atom and two rings with nitrogen as ring hetero atom
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    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P31/00Antiinfectives, i.e. antibiotics, antiseptics, chemotherapeutics
    • A61P31/04Antibacterial agents
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    • C12PFERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIRED CHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERS FROM A RACEMIC MIXTURE
    • C12P17/00Preparation of heterocyclic carbon compounds with only O, N, S, Se or Te as ring hetero atoms
    • C12P17/18Preparation of heterocyclic carbon compounds with only O, N, S, Se or Te as ring hetero atoms containing at least two hetero rings condensed among themselves or condensed with a common carbocyclic ring system, e.g. rifamycin
    • C12P17/182Heterocyclic compounds containing nitrogen atoms as the only ring heteroatoms in the condensed system

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Abstract

The invention requests to protect a metabolite of Streptomyces pyrophyllus and application, belongs to the technical field of microbial engineering, and particularly relates to an alkaloid compound, namely izumiphenazine A extracted from a Streptomyces pyrophyllus (Streptomyces showdoensis) liquid fermentation product, and a preparation method and application thereof. Specifically, the invention discloses an alkaloid compound, which has a chemical structural formula as follows:

Description

Metabolite of streptomyces pyroxyli and application
Technical Field
The invention relates to the field of biotechnology, in particular to a compound izumiphenazine A extracted from Streptomyces showdoensis liquid fermentation product, a preparation method thereof and an antibacterial activity application thereof.
Background
Antibiotics are often used to treat infections caused by minute pathogens and the like, making a significant contribution to human health. With the discovery of penicillin, antibiotic has become one of the greatest discoveries in the 20 th century, and the use of penicillin prolongs the average life of human beings by more than 15 years. However, in recent years, the drug resistance of pathogenic bacteria to antibiotics is more and more serious, even multiple drug resistance and cross drug resistance appear in some pathogenic bacteria, and the number of pathogenic bacteria with drug resistance also shows a rapid growth trend. If this problem cannot be solved as quickly as possible, we will likely enter the "post-antibiotic era" where no drugs are available. In order to avoid the health threat of human beings, the search for drug source compounds with new structural characteristics or new action characteristics becomes a main method for coping with the rapid change of pathogenic bacteria. The insect symbiotic bacteria have special metabolic pathways in the long-term evolution process with the host, and are valuable resource libraries for the research and development of novel antibiotics. Therefore, the isolation of antibacterial active substances of novel structure from insect-associated actinomycetes is one of the current means for combating pathogenic bacteria resistance.
Disclosure of Invention
The invention aims to solve the technical problem of providing an alkaloid compound, a preparation method and application thereof, namely the alkaloid compound serving as an antibacterial agent.
In order to solve the technical problems, the invention provides an alkaloid compound izumiphenazine A of streptomyces atrophaeus, which has the structural formula:
Figure BDA0002972280910000011
the streptomyces harynovii can be specifically a strain of China general microbiological culture Collection center (CGMCC 4.1757).
The invention also provides a preparation method of the alkaloid compound, which comprises the following steps:
1) inoculating streptomyces pyroxylinus into a Gao's first culture medium, and culturing for 3d in a constant-temperature incubator at 28 +/-0.5 ℃;
2) then inoculating fresh hypha into 100mL of an autoclaved liquid Gaoshi I culture medium, and culturing for 3d on a shaking table at the temperature of 28 +/-0.5 ℃ and the rotating speed of 180rpm to obtain a seed solution;
3) transferring the seed liquid into a fermentation culture medium according to the inoculation amount of 10-15%, and performing fermentation culture for 7d according to the shaking table condition in the step 1;
4) filtering the fermentation liquor obtained in the step 3, extracting the filtrate with ethyl acetate, and performing vacuum concentration and drying to obtain a crude extract;
5) preparing a silica gel column by using the crude extract obtained in the step (4) and silica gel with the mass being 10 times that of the crude extract, eluting with pure dichloromethane at the beginning, and then sequentially eluting with dichloromethane and methanol with the ratio of 100:1, 100:2 and 100:4 to obtain different elution parts;
6) drying the elution part 100:1 in the step 5, and then separating by gel column chromatography, taking methanol as an eluent, and recrystallizing the obtained precipitate in methanol; obtaining the alkaloid compound.
The invention also provides the application of the alkaloid compound in the antibacterial agent, which comprises the following specific steps: is used for inhibiting the growth of pathogenic bacteria such as Staphylococcus aureus and Tetragenococcus.
The invention has the following beneficial effects:
1. the alkaloid compounds of the present invention can be used as antibacterial agents or their precursors.
2. The alkaloid compound can be produced by liquid fermentation by using microorganisms, and has the advantages of simple process, short period, low cost and guaranteed source.
3. The invention utilizes the biological method to synthesize the alkaloid compound, and has no pollution to the environment.
Detailed Description
The invention is further explained below with reference to specific embodiments.
Example 1 liquid fermentation of Streptomyces Clariticus
The Streptomyces pyroxyli strain (with the preservation number of CGMCC4.1757) is obtained from China general microbiological culture Collection center, inoculated into a Gao's No. I culture medium, and cultured in a constant temperature incubator at 28 +/-0.5 ℃ for 3 days; inoculating fresh hypha into 100mL of autoclaved liquid Gaoshi I culture medium, and culturing for 3d on a shaking table at the temperature of 28 +/-0.5 ℃ and the rotating speed of 180rpm to obtain seed liquid; transferring the seed liquid into a fermentation culture medium according to the inoculation amount of 10% -15%, and culturing for 7d on a shaking table with the temperature of 28 +/-0.5 ℃ and the rotating speed of 180 rpm.
Example 2 extraction and isolation of Alkaloids of Streptomyces Clarithrombus
Filtering 20L of fermentation liquor prepared in example 1 by using 3 layers of gauze to obtain filtrate, extracting the filtrate for several times by using a medium-polarity organic solvent ethyl acetate in a ratio of 1:1 until no extract is obtained in an organic phase, combining all extraction solutions, and concentrating the combined extraction solutions at high pressure by using a rotary evaporator to obtain 9.5g of a crude extract of a corresponding strain; uniformly mixing the crude extract with silica gel of equal mass of 100-200 meshes, drying the sample in a drying oven at 40 ℃, and further grinding the sample into powder for later use; silica gel column is prepared by using silica gel with 10 times mass of crude extract, and dichloromethane and methanol with different proportions are used as eluent to elute from low polarity to high polarity. Eluting with pure dichloromethane, sequentially eluting with dichloromethane-methanol ratio of 100:1, 100:2, and 100:4 (each eluent is about 10 times column volume), drying, separating by gel column chromatography, eluting with methanol, and recrystallizing to obtain polyketide 45 mg. The structural formula is as follows:
Figure BDA0002972280910000021
example 3 identification of alkaloid Compound Structure of Streptomyces Cladosporus
The structure of the alkaloid compounds of the streptomyces pyrophyllus is determined based on the analysis of the characteristics, mass spectrum and nuclear magnetic resonance spectrum data of the alkaloid compounds. The trait and spectroscopy data are as follows:
red amorphous powder, easily soluble in dimethyl sulfoxide. The nmr spectroscopic data for the compounds are as follows: 1H NMR (DMSO-d6) Δ:3.69(1H, dd,7.2Hz14.8Hz),4.19(1H, dd,6.5Hz14.8Hz),4.80(1H, m),5.34(1H, dd,3.3Hz 6.1Hz),5.59(1H, dd,6.1Hz10.4Hz),6.33(1H, d,3.3Hz),7.11(1H, d,7.9Hz),7.32(1H, d,7.7Hz),7.38(1H, d,7.9Hz),7.59(1H, t,7.9Hz),7.71(1H, d,7.7Hz),7.81(1H, t,7.7Hz),8.12(1H, s),10.30(1H, s),10.77(1H, s), 1H, 14.34H, 14 brs); 13CNMR (DMSO-d6) delta 33.3,39.1,39.2,39.4,39.5,39.6,39.8,39.9,71.5,88.6,111.6,111.7,118.0,118.3,130.5,131.2,137.3,138.7,142.2,149.7,153.1,153.4,153.5,158.7,165.7.
Example 3 inhibitory Effect of Alkaloids of Streptomyces Clarkensis on pathogenic bacteria
And (3) carrying out antibacterial activity test on the alkaloid compound of the streptomyces adonnans by adopting a filter paper method. Three kinds of pathogenic bacteria are inoculated in PDA liquid culture medium and cultured on a shaking table at 30 ℃ and 180r/min overnight. Then, the concentration of the bacterial liquid is adjusted to 0.5-1 McLee by using sterile water. Compounds and positive controls (gentamicin) were formulated with DMSO at a concentration of 6 mg/mL. Under the aseptic condition, a pipette is used for sucking 200 mu L of diluted bacterial suspension, the diluted bacterial suspension is sprayed on a PDA solid plate and is evenly coated, then a pipette is used for sucking 5 mu L of prepared compound and positive control solution, the compound and the positive control solution are respectively dripped on sterile filter paper sheets with the diameter of 5mm, after DMSO is volatilized to be dry, the filter paper sheets are placed in the center of the plate which is fully coated with pathogenic bacteria, the culture dish is placed in a constant temperature culture box in an inverted mode to be incubated for about 24 hours,
the growth inhibitory effect of alkaloids on pathogenic bacteria is shown in table 1 below. As can be seen from the data in the table, when the test concentration is 90 mug/filter paper, the diameter of the inhibition zone for staphylococcus aureus is 13 +/-1.2 mm, and the activity is slightly weaker than that of positive control gentamicin sulfate (19.2 +/-2.8 mm); the alkaloid compounds have weak activity on Escherichia coli and Tetragenococcus, and the diameters of inhibition zones are less than 12 mm.
TABLE 1 growth inhibition (mm) of pathogenic bacteria by alkaloid compounds of Streptomyces Cladosporus
Figure BDA0002972280910000031
Note: results are expressed as the standard for ± 3 parallel measurements of zone diameter; gentamicin sulfate is a positive control of pathogenic bacteria; the test concentration was 90. mu.g/filter paper sheet.
Finally, it is also noted that the above-mentioned lists merely illustrate a few specific embodiments of the invention. It is obvious that the invention is not limited to the above embodiments, but that many variations are possible. All modifications which can be derived or suggested by a person skilled in the art from the disclosure of the present invention are to be considered within the scope of the invention.

Claims (3)

1. An alkaloid compound izumiphenazine A of streptomyces pyrophyllus is characterized in that the structural formula is as follows:
Figure FDA0002972280900000011
2. the process for preparing the Streptomyces pyroxylensis compound izumiphenazine A according to claim 1, which comprises the steps of:
1) inoculating streptomyces pyroxylinus into a Gao's first culture medium, and culturing for 3d in a constant-temperature incubator at 28 +/-0.5 ℃;
2) then inoculating fresh hypha into 100mL of an autoclaved liquid Gaoshi I culture medium, and culturing for 3d on a shaking table at the temperature of 28 +/-0.5 ℃ and the rotating speed of 180rpm to obtain a seed solution;
3) transferring the seed liquid into a fermentation culture medium according to the inoculation amount of 10-15%, and performing fermentation culture for 7d according to the shaking table condition in the step 1;
4) filtering the fermentation liquor obtained in the step 3, extracting the filtrate with ethyl acetate, and performing vacuum concentration and drying to obtain a crude extract;
5) preparing a silica gel column by using the crude extract obtained in the step (4) and silica gel with the mass being 10 times that of the crude extract, eluting with pure dichloromethane at the beginning, and then sequentially eluting with dichloromethane and methanol with the ratio of 100:1, 100:2 and 100:4 to obtain different elution parts;
6) drying the elution part 100:1 in the step 5, and then separating by gel column chromatography, taking methanol as an eluent, and recrystallizing the obtained precipitate in methanol; obtaining the alkaloid compound.
3. Use of the novel compounds according to claim 1, characterized in that: has antagonistic activity against Staphylococcus aureus and Tetracoccus.
CN202110266669.5A 2021-03-11 2021-03-11 Metabolite of streptomyces pyroxyli and application Pending CN113121551A (en)

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Cited By (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN115287236A (en) * 2022-08-15 2022-11-04 安徽农业大学 Preparation method and application of alkaloid compound from insect symbiotic actinomycetes

Citations (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JP2011178734A (en) * 2010-03-02 2011-09-15 Chiba Univ Izumiphenazine a

Patent Citations (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JP2011178734A (en) * 2010-03-02 2011-09-15 Chiba Univ Izumiphenazine a

Non-Patent Citations (1)

* Cited by examiner, † Cited by third party
Title
ABDELFATTAH, MOHAMED S.: "Izumiphenazines A-C: Isolation and structure elucidation of phenazine derivatives from Streptomyces sp. IFM 11204" *

Cited By (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN115287236A (en) * 2022-08-15 2022-11-04 安徽农业大学 Preparation method and application of alkaloid compound from insect symbiotic actinomycetes
CN115287236B (en) * 2022-08-15 2023-08-11 安徽农业大学 Preparation method and application of alkaloid compounds derived from insect symbiotic actinomycetes

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Application publication date: 20210716