CN112341526A - Novel coronavirus nucleocapsid protein specific antigen polypeptide and application thereof - Google Patents
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- C07K16/10—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from viruses from RNA viruses
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Abstract
The invention discloses a novel coronavirus nucleocapsid protein specific antigen polypeptide and application thereof; the amino acid sequence of the antigen polypeptide is shown as SEQ ID NO.1 or SEQ ID NO. 2. The novel coronavirus nucleocapsid protein specific antigen polypeptide can be used for preparing a kit for detecting a novel coronavirus specific antibody, and the kit can detect a patient serum SARS-CoV-2 specific antibody. The kit has high specificity, good repeatability and simple and quick operation, and can be widely used for evaluating the infection condition of the novel coronavirus.
Description
Technical Field
The invention relates to the technical field of biology, in particular to a novel coronavirus nucleocapsid protein specific antigen polypeptide and application thereof.
Background
The new type of coronavirus Disease (Corona Virus Disease 2019, COVID-19) is caused by infection with a new type of coronavirus (SARS-CoV-2). The virus is susceptible to all humans.
In the phylogenetic classification, coronaviruses (CoV) belong to the order nestvirales, the family coronaviridae, the subfamily orthocoronaviruses. The family is divided into four coronavirus genera of alpha, beta, gamma and delta according to genome characteristics[5]. At present, the WHO confirms seven human coronaviruses (HCoVs) in total, belonging to alpha-CoV (HCoV-229E and HCoV-NL63) and beta-CoV (HCoV-OC43, HCoV-HKU1, MERS-CoV, SARS-CoV-2), respectively. Human coronary viruses can cause respiratory and intestinal infections in humans, such as common cold in adults, upper respiratory infections in children, and acute gastroenteritis in infants and newborns, and severe individuals can develop acute respiratory syndrome, respiratory failure, and even death. The four human coronaviruses HCoV-229E, HCoV-OC43, HCoV-HKU1 and HCoV-NL63 are weak in pathogenicity, persist in the human population, are distributed in various regions of the world, and often cause respiratory tract infection in winter and early spring. SARS-CoV-2 belongs to the genus beta coronavirus, subgenus Sarbecovirus, based on phylogenetic analysis. Structurally, the coronavirus is spherical or elliptic, has diameter of 60-220nm, and has envelope with spinous processes on the surface and radial arrangement. The inside of the viral particle is composed of RNA and nucleocapsid protein. The viral nucleic acid is single-stranded positive-strand RNA, 27-33kb in length, is not fragmented, and is the longest of known RNA viruses. Coronaviruses contain four major structural proteins: nucleocapsid protein (N), transmembrane protein (M), small envelope protein (E) and spike glycoprotein (S). The N protein is a structural protein of coronavirus, combines with virus RNA to form nucleocapsid, and is a main antigen molecule. The N protein is abundantly expressed during viral infection and induces a strong immune response, often as a diagnostic target for coronavirus infection, and is used to assess the seroprevalence of different coronaviruses in human populations.
The development of a rapid diagnosis COVID-19 serological detection method has important significance for evaluating and controlling the epidemic of the infectious diseases. At present, COVID-19 patients are mainly diagnosed by reverse transcription polymerase chain reaction (RT-PCR) in laboratory diseases, but SARS-CoV-2 needs to be operated in a laboratory with biosafety level 2 or more, operators need to be trained professionally, and separation and identification need longer time.
Disclosure of Invention
The invention aims to overcome the defects in the prior art and provides a novel coronavirus nucleocapsid protein specific antigen polypeptide and application thereof.
The purpose of the invention is realized by the following technical scheme: a novel coronavirus nucleocapsid protein specific antigen polypeptide, wherein the amino acid sequence of the antigen polypeptide is shown as SEQ ID NO.1: NSPARMASGGGET or SEQ ID NO.2: TSPARMAGNGGDA, respectively.
An application of the novel coronavirus nucleocapsid protein specific antigen polypeptide in preparing a kit for detecting a novel coronavirus specific antibody.
The invention has the beneficial effects that the polypeptide-enzyme-linked immunosorbent assay kit for detecting the specific antibody of the novel coronavirus nucleocapsid protein is constructed by utilizing the antigen polypeptide, so that the infection condition of the novel coronavirus can be quickly and effectively evaluated. The kit can detect SARS-CoV-2 specific antibody in serum of a patient. The kit has high specificity, good repeatability and simple, convenient and quick operation, and can be widely used for evaluating the infection condition of the novel coronavirus.
Drawings
FIG. 1 is a graph of the predicted results of linear epitopes of the novel coronavirus nucleocapsid protein, wherein a and b are predicted epitope sites;
FIG. 2 is a diagram showing an alignment of amino acid sequences of 2 predicted antigenic polypeptides in the human coronavirus nucleocapsid protein;
FIG. 3 is a graph showing the analysis of the results of detecting antibodies specific to the serum nucleocapsid protein of a patient having COVID-19 using the kit of the present invention.
Detailed Description
Example 1
The amino acid sequence of SARS-Cov-2N protein (GenBank accession number YP-009724397) was analyzed for antigenicity, hydrophilicity, and surface accessibility by DNAStar Lasergene's Protean. Selecting amino acid segments with antigenicity index not less than 0, hydrophilicity index not less than 0 and protein surface accessibility index not less than 1, comprehensively analyzing the results, selecting polypeptide segments with all 2 factors being accorded, judging the polypeptide segments as potential linear B cell epitope, obtaining 2 segments of polypeptide in total, and respectively locating 25-37(a) and 205-217(B) segments (table 1) of each prediction site at the N end.
Table 1: prediction of linear B cell epitopes of novel coronavirus N protein
Is a weighted average of the indices corresponding to each amino acid of the polypeptide sequence.
Example 2
The new coronavirus N protein was subjected to multiple sequence alignments with the amino acid sequences of the N proteins of 6 other human-infected coronaviruses using ClustalX2.1 software, and as a result, the two antigenic polypeptides predicted to have specificity in example 1 were obtained (FIG. 2).
Example 3
1. Preparing a pre-coated enzyme standard plate: artificially synthesizing antigen polypeptides SEQ ID NO.1: NSPARMASGGGET and SEQ ID NO.2: TSPARMAGNGGDA, and dissolving and diluting the polypeptides to 10 mu g/mL by using a coating buffer solution; adding 100 mu L of enzyme label plate with 96 holes, reacting for 12h at 4 ℃, and washing the plate for 3 times by using buffer solution; adding 200 μ L of blocking solution into each well, incubating at 37 deg.C for 1h, washing plate for 3 times, freeze drying, sealing with sealing film, and storing at 4 deg.C.
2. Preparation of a reagent:
(1) coating buffer (pH 9.6): so as to contain 1.59g/L of Na2CO3And 2.93g/L NaHCO3An aqueous solution of (a).
(2) PBS buffer (pH 7.4): 8.0g NaCl, 0.2g KH2PO4、2.9g Na2HPO4 .12H2O and 0.2g KCl in 1000mL distilled water.
(3) Blocking solution, sample diluent and enzyme diluent: 1g of bovine serum albumin was dissolved in 100mL of PBS buffer.
(4) Enzyme-labeled antibody at working concentration: mu.L of a commercially available horseradish peroxidase-labeled goat anti-human IgG antibody was dissolved in 5000. mu.L of the enzyme dilution.
(5) 25-fold concentrated washing solution: 6g/L KH2PO4、5g/L KCl、36g/L Na2HPO4200g/L NaCl and 1.25% Tween 20 by volume fraction, and diluting with purified water 25 times before use to obtain washing buffer solution for use.
(6) Positive control serum: blood from patients with COVID-19 was obtained, separated to obtain serum, and diluted 20-fold.
(7) Negative control serum: blood of normal people is obtained, serum is obtained by separation, and the serum is diluted by 20 times.
(8) The TMB color development liquid and the stop solution adopt commercial reagents, such as a Kangji TMB substrate color development kit.
And (3) forming a detection kit by the pre-coated enzyme standard plate prepared in the step (1) and the reagent prepared in the step (2).
3. Sample detection: the sample was diluted 20-fold with sample diluent. Add 100. mu.L of pre-diluted sample to each well of the pre-coated plate, and set up negative, positive and blank wells simultaneously, incubate for 1 hour at 37 ℃. The plate was washed 5 times with washing solution. mu.L of horseradish peroxidase-labeled goat anti-human IgG (1:5000) was added to each well and incubated at 37 ℃ for 30 min. The plate was washed 5 times with washing solution. Adding substrate TMB developing solution for 15min, adding 50 μ L2M sulfuric acid to terminate reaction, and detecting absorbance A (A) at 450nm with microplate reader450). And judging the result by using a P/N ratio method, wherein the sample serum absorbance value/negative control absorbance value is positive when being more than or equal to 2.1, and the sample serum absorbance value/negative control absorbance value is negative when not being more than or equal to 2.1.
Example 4
Serum was obtained from 1 patient with COVID-19 and 1 normal person at 3/23 days 2020. Using the detection kit of the present invention, the detection was performed in the same manner as in example 3, and all the results were expressed as mean. + -. standard deviation, and the obtained results are shown in FIG. 3, in which OD is negative serum OD of normal person450< Cutoff value, while patient serum OD450Cutoff value.
Sequence listing
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<120> novel coronavirus nucleocapsid protein specific antigen polypeptide and application thereof
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Claims (2)
1. A novel coronavirus nucleocapsid protein specific antigen polypeptide, wherein the amino acid sequence of the antigen polypeptide is shown as SEQ ID NO.1 or SEQ ID NO. 2.
2. Use of the novel coronavirus nucleocapsid protein-specific antigen polypeptide of claim 1 in the preparation of a kit for detecting a novel coronavirus-specific antibody.
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