CN111363829A - miRNA marker of bile duct cancer and application thereof - Google Patents

miRNA marker of bile duct cancer and application thereof Download PDF

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CN111363829A
CN111363829A CN202010458316.0A CN202010458316A CN111363829A CN 111363829 A CN111363829 A CN 111363829A CN 202010458316 A CN202010458316 A CN 202010458316A CN 111363829 A CN111363829 A CN 111363829A
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Abstract

The application provides miRNA markers for diagnosing bile duct cancer and application thereof. The miRNA markers provided by the application comprise one or more of miR-151a-5p, miR-191-5p and miR-4732-3p, and can be used for rapidly and accurately screening, predicting, diagnosing or prognosing cholangiocarcinoma.

Description

miRNA marker of bile duct cancer and application thereof
Technical Field
The application belongs to the field of molecular biology, and particularly relates to a miRNA marker for screening, predicting, diagnosing or prognosing bile duct cancer and an application thereof.
Background
Exosomes are tiny membrane vesicles secreted by most cells in the body, with lipid bilayer membranes, approximately 30-150 nm in diameter. Exosomes are widely existed and distributed in various body fluids, carry and transmit important signal molecules, form a brand-new cell-cell information transmission system, influence the physiological state of cells and are closely related to the occurrence and the progress of various diseases.
Exosomes can directly promote growth, invasion and migration of tumor cells by serving as an intercellular communication mechanism, and the contained miRNA is an important functional molecule for transmitting information among cells. By screening and identifying small RNA in exosome secreted by tumor cells, a new clue and a more convenient means can be provided for early diagnosis of tumors.
Disclosure of Invention
The inventor of the application unexpectedly discovers a miRNA molecular marker which can be accurately and stably used for screening, predicting, diagnosing or prognosing the bile duct cancer for the first time through exploratory research on miRNA in the circulating blood exosomes of the bile duct cancer patient.
Based on this, in one aspect, the present application provides a kit, microarray or biochip for screening, predicting, diagnosing or prognosing cholangiocarcinoma comprising means or reagents for specifically detecting one or more miRNA markers selected from the group consisting of: miR-151a-5p, miR-191-5p, and miR-4732-3 p.
In particular embodiments, the kits, microarrays or biochips provided herein wherein the included means or reagents further comprise primers and/or probes capable of specifically detecting the miRNA markers.
In a specific embodiment, the primer and/or probe sequence of the marker miR-151a-5p is: ucgaggagcucacagucuagu, respectively; the primer and/or probe sequence of the marker miR-191-5p is as follows: caacggaaucccaaaagcagcug, respectively; the primer and/or probe sequence of the marker miR-4732-3p is as follows: gcccugaccuguccuguucug are provided.
In another aspect, the present application provides a use of a miRNA marker for the preparation of a kit, microarray or biochip for screening, predicting, diagnosing or prognosing cholangiocarcinoma, wherein the miRNA marker is selected from one or more of: miR-151a-5p, miR-191-5p, and miR-4732-3 p.
In yet another aspect, the present application provides the use of a tool or reagent for specifically detecting miRNA markers for the preparation of a kit, microarray or biochip for screening, predicting, diagnosing or prognosing cholangiocarcinoma, wherein the miRNA markers are selected from one or more of: miR-151a-5p, miR-191-5p, and miR-4732-3 p.
In a further aspect, the present application provides the use of primers and/or probes for specifically detecting miRNA markers for the preparation of a kit, microarray or biochip for screening, predicting, diagnosing or prognosing cholangiocarcinoma, wherein the miRNA markers are selected from one or more of: miR-151a-5p, miR-191-5p, and miR-4732-3 p.
In particular embodiments, the miRNA markers to which the present application relates are selected from one or more of: initial miR-151a-5p, precursor miR-151a-5p, mature miR-151a-5p, initial miR-191-5p, precursor miR-191-5p, mature miR-191-5p, initial miR-4732-3p, precursor miR-4732-3p, and mature miR-4732-3 p.
In particular embodiments, the initial miR-151a-5p, the initial miR-191-5p, and the initial miR-4732-3p are capable of being cleaved and expressed intracellularly into the corresponding mature miR-151a-5p, mature miR-191-5p, mature miR-4732-3 p; the precursor miR-151a-5p, the precursor miR-191-5p and the precursor miR-4732-3p can be cut and expressed into corresponding mature miR-151a-5p, mature miR-191-5p and mature miR-4732-3p in cells.
In another specific embodiment, the miRNA markers to which the present application relates are derived from circulating blood exosomes of the subject.
Compared with the existing molecular marker, the miRNA molecular marker provided by the application can accurately screen, predict, diagnose or prognose the occurrence and development of bile duct cancer, and has the characteristics of rapidness and stability.
Products or tools, such as kits, microarrays, biochips, or other similar detection tools, prepared based on the miRNA molecular markers provided herein can be used for screening, predicting, diagnosing, or prognosing cholangiocarcinoma by rapid detection of circulating blood in a subject. The method and the related products thereof have high specificity, sensitivity and accuracy.
Drawings
FIG. 1 shows the total miRNA expression after calibration in the circulating blood exosomes of cholangiocarcinoma patients.
FIG. 2 shows the miRNA expression level of circulating blood exosomes of cholangiocarcinoma patients.
FIG. 3 is a diagram of further detecting the expression level of miRNA with high expression in the circulating blood exosomes of cholangiocarcinoma patients by enlarging samples.
FIG. 4 shows the expression level of high-expression miRNA in the circulating blood exosomes after bile duct cancer patient surgery.
Fig. 5 shows the accuracy of predicting cholangiocarcinoma by high-expression miRNA.
Detailed Description
Cholangiocarcinoma is an important biliary tract malignant tumor, specific miRNA is reported for cholangiocarcinoma, and especially, identification of exosome miRNA secreted into circulating blood by cholangiocarcinoma cells is still blank.
The inventor of the application screens and verifies that the miRNA in the circulating blood exosomes is used for predicting the occurrence and development of the bile duct cancer for the first time.
Specifically, the inventor of the application unexpectedly discovers specific high-expression miRNA in circulating blood exosomes of a batch of cholangiocarcinoma patients through high-throughput sequencing based on samples of Chinese people (mainly Han).
Further, the inventor verifies that the levels of miR-151a-5p, miR-191-5p and miR-4732-3p in the blood exosomes of the cholangiocarcinoma patients are obviously higher than the levels of miR-151a-5p, miR-191-5p and miR-4732-3p in the blood exosomes of normal people through scale-up, and the levels of miR-151a-5p, miR-191-5p and miR-4732-3p in circulating blood exosomes of patients with bile duct cancer after surgery are remarkably reduced, which indicates that miR-151a-5p, miR-191-5p and miR-4732-3p in circulating blood exosomes can be used as markers for screening, predicting, diagnosing or prognosing bile duct cancer, and provides a basis for the establishment of a clinical scheme for preventing or treating bile duct cancer. For example, if the expression level of any one or more of circulating blood exosomes miR-151a-5p, miR-191-5p or miR-4732-3p of the subject is increased, the subject can be judged to be at risk of having cholangiocarcinoma or to have cholangiocarcinoma; if the expression quantity of any one or more of the circulating blood exosomes miR-151a-5p, miR-191-5p or miR-4732-3p of the treated biliary duct cancer patient is reduced, the treatment effect of the biliary duct cancer patient can be judged to be good or the biliary duct cancer patient does not relapse.
Based on this, the inventors of the present application have developed products or tools, including kits, microarrays, biochips, or other similar detection tools, that can be used for rapid and accurate screening, prediction, diagnosis, or prognosis of cholangiocarcinoma.
For a better understanding of the present disclosure, reference will now be made to the following detailed description taken in conjunction with the accompanying drawings. It should be understood that these examples are for further illustration only and are not intended to limit the scope of the present application. In addition, after reading the contents of the present application, some insubstantial changes or modifications of the present application will still fall within the scope of the present application.
The experimental procedures in the following examples are, unless otherwise specified, routine in the art.
Example 1
The embodiment provides a method for identifying miRNA specifically and highly expressed in circulating blood exosomes of cholangiocarcinoma patients through high-throughput sequencing. The specific method is as follows: the value of Xue Xinying is the value of Xue Xinying,et al., Exosomal miRNA profiling before andafter surgery revealed potential diagnostic and prognostic markers for lungadenocarcinoma,Acta Biochim Biophys Sin (Shanghai), Vol. 52, No. 3, Pages281-293, 2020。
the sampled patient information is shown in table 1.
Figure DEST_PATH_IMAGE001
TABLE 1
The total expression quantity of miRNA after calibration in the circulating blood exosomes of the patients with bile duct cancer is shown in figure 1.
The results show that the miRNA highly expressed in the circulating blood exosomes of the patients with the bile duct cancer comprises the following components: miR-1-3p, miR-96-5p, miR-151a-5p, miR-191-5p, miR-192-5p, miR-182-5p, NC-000010.11-21778, miR-4732-3p, miR-26a-5p and miR-146b-5p, and the specific data please refer to figure 2.
Example 2
This example further verifies the high expression of miRNA in the circulating blood exosomes of the patients with cholangiocarcinoma identified in example 1 by expanding the sample.
Specifically, by comparing the levels of miR-151a-5p, miR-191-5p and miR-4732-3p in the blood exosomes of 40 normal persons and 45 bile duct cancer patients, it was found that the levels of miR-151a-5p, miR-191-5p and miR-4732-3p in the blood exosomes of the bile duct cancer patients were significantly higher than the levels of miR-151a-5p, miR-191-5p and miR-4732-3p in the blood exosomes of the normal persons, as shown in FIG. 3.
Example 3
The example further tests the expression quantity of miR-151a-5p, miR-191-5p and miR-4732-3p in circulating blood exosomes of patients with cholangiocarcinoma after receiving surgical treatment.
miR-151a-5p, miR-191-5p and miR-4732-3p in circulating blood exosomes of cholangiocarcinoma patients are remarkably reduced after surgery, as shown in FIG. 4.
Example 4
In this example, the accuracy and specificity of miR-151a-5p, miR-191-5p and miR-4732-3p for predicting cholangiocarcinoma are evaluated, and the specific method please refer to: the sum of the Xi Chen and the Xi Chen,et al., Characterization of microRNAs in serum:a novel class of biomarkers for diagnosis of cancer and other diseases,Cell Research, No. 10, Page 997-1006, 2008。
as shown in FIG. 5, the specificity and accuracy of predicting the bile duct cancer by the miR-151a-5p, miR-191-5p and miR-4732-3p in the circulating blood exosomes of the patients with the bile duct cancer are high, particularly the AUC of the bile duct cancer predicted by the miR-151a-5p is 0.8694, and the prediction model is excellent.
The above description is not intended to limit the present application, nor is the present application limited to the above examples. Those skilled in the art should also realize that such changes, modifications, additions and substitutions are within the spirit and scope of the present application.

Claims (8)

1. A kit, microarray or biochip for screening, predicting, diagnosing or prognosing cholangiocarcinoma comprising means or reagents for specifically detecting one or more miRNA markers selected from the group consisting of: miR-151a-5p, miR-191-5p, and miR-4732-3 p.
2. The kit, microarray or biochip of claim 1, wherein the means or reagents comprise primers and/or probes capable of specifically detecting the miRNA markers.
3. The kit, microarray or biochip of claim 1 or 2, wherein the miRNA markers are selected from one or more of: initial miR-151a-5p, precursor miR-151a-5p, mature miR-151a-5p, initial miR-191-5p, precursor miR-191-5p, mature miR-191-5p, initial miR-4732-3p, precursor miR-4732-3p, and mature miR-4732-3 p.
4. The kit, microarray or biochip of claim 1 or 2, wherein the miRNA marker is from a circulating blood exosome of a subject.
Use of a miRNA marker for the preparation of a kit, microarray or biochip for screening, predicting, diagnosing or prognosing cholangiocarcinoma, wherein the miRNA marker is selected from one or more of: miR-151a-5p, miR-191-5p, and miR-4732-3 p.
6. Use of a tool or reagent for the specific detection of a miRNA marker for the manufacture of a kit, microarray or biochip for screening, predicting, diagnosing or prognosing cholangiocarcinoma, wherein the miRNA marker is selected from one or more of: miR-151a-5p, miR-191-5p, and miR-4732-3 p.
7. The use of claim 5 or 6, wherein the miRNA marker is selected from one or more of: initial miR-151a-5p, precursor miR-151a-5p, mature miR-151a-5p, initial miR-191-5p, precursor miR-191-5p, mature miR-191-5p, initial miR-4732-3p, precursor miR-4732-3p and mature miR-4732-3 p.
8. The use of claim 5 or 6, wherein the miRNA marker is from a circulating blood exosome of the subject.
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