CN110777125B - Efficient preparation method of heterocyclic drug intermediate - Google Patents

Efficient preparation method of heterocyclic drug intermediate Download PDF

Info

Publication number
CN110777125B
CN110777125B CN201911120248.0A CN201911120248A CN110777125B CN 110777125 B CN110777125 B CN 110777125B CN 201911120248 A CN201911120248 A CN 201911120248A CN 110777125 B CN110777125 B CN 110777125B
Authority
CN
China
Prior art keywords
mutant
boc
substrate
heterocyclic
alcohol dehydrogenase
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Active
Application number
CN201911120248.0A
Other languages
Chinese (zh)
Other versions
CN110777125A (en
Inventor
倪晔
吴彦霏
周婕妤
许国超
韩瑞枝
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Jiangnan University
Original Assignee
Jiangnan University
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Jiangnan University filed Critical Jiangnan University
Priority to CN201911120248.0A priority Critical patent/CN110777125B/en
Publication of CN110777125A publication Critical patent/CN110777125A/en
Application granted granted Critical
Publication of CN110777125B publication Critical patent/CN110777125B/en
Active legal-status Critical Current
Anticipated expiration legal-status Critical

Links

Images

Classifications

    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N9/00Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
    • C12N9/0004Oxidoreductases (1.)
    • C12N9/0006Oxidoreductases (1.) acting on CH-OH groups as donors (1.1)
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12PFERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIRED CHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERS FROM A RACEMIC MIXTURE
    • C12P17/00Preparation of heterocyclic carbon compounds with only O, N, S, Se or Te as ring hetero atoms
    • C12P17/10Nitrogen as only ring hetero atom
    • C12P17/12Nitrogen as only ring hetero atom containing a six-membered hetero ring
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12YENZYMES
    • C12Y101/00Oxidoreductases acting on the CH-OH group of donors (1.1)
    • C12Y101/01Oxidoreductases acting on the CH-OH group of donors (1.1) with NAD+ or NADP+ as acceptor (1.1.1)
    • C12Y101/01001Alcohol dehydrogenase (1.1.1.1)

Abstract

The invention discloses a high-efficiency preparation method of a heterocyclic drug intermediate. The invention uses an alcohol dehydrogenase mutant and glucose dehydrogenase coupling to catalyze a heterocyclic substrate to generate a heterocyclic drug intermediate, wherein the alcohol dehydrogenase mutant mutates tyrosine at 127 bit of an alcohol dehydrogenase female parent with an amino acid sequence shown as SEQ ID NO.2 into tryptophan. The mutant Y127W of the invention can reduce the product inhibition effect in a single aqueous phase system without adding any cosolvent, so that the conversion rate can reach more than 99% within 12 h. The mutant Y127W is coupled with glucose dehydrogenase (BmGDH), and the single-aqueous phase system without any exogenous coenzyme and organic cosolvent realizes the scale of 50mL and the substrate concentration as high as 600 g.L‑1The catalyst loading was 3.3%. The e.e. value of the final product (S) -NBHP is as high as 99.4%, and the space-time yield is about 1400 g.L‑1·d‑1The purity of the product is 99.58%.

Description

Efficient preparation method of heterocyclic drug intermediate
Technical Field
The invention relates to a high-efficiency preparation method of a heterocyclic drug intermediate, belonging to the technical field of biocatalysis.
Background
(S)-N-BOC-3-hydroxypiperidine [ (S) -NBHP]Is a key chiral intermediate for synthesizing a medicament for treating lymphoma, namely IBRUTINIB (IBRUTINIB). The method for biosynthesis of (S) -NBHP is more environmentally friendly and is receiving increasing attention. However, the conventional research has been conductedThe results show that the biological method for synthesizing (S) -NBHP requires the addition of organic cosolvent and expensive coenzyme, and the high substrate concentration can cause the inhibition of substrate or product, thus increasing the synthesis cost of (S) -NBHP.
(1)2009 aCHERETZAnd the like, a biocatalytic synthesis method is adopted for the first time, reductase in carrot blocks is used for catalysis, and the catalyst is cheap and environment-friendly, so that a new idea is provided for catalytically synthesizing optically active cyclic 3-hydroxypiperidine. However, this reaction is not suitable for industrial scale-up due to the low substrate concentration (3MM), high concentration of added catalyst (23%, M/V) and low yield (73%). (ORGANIC LETTERS,2009,11(6):1245-
(2) 2014XIN JUAnd the (S) -NBHP is synthesized by screening commercial ketoreductase KRED and utilizing the capability of ketoreductase for oxidizing isopropanol to construct a method for regenerating substrate coupling coenzyme, and the substrate is added in batches in the preparation process to reduce the substrate inhibition effect and finally realize the substrate concentration of 100 G.L-1The biotransformation of (1). (O)RGANIC PROCESS RESEARCH&DEVELOPMENT,2014,18(6):827-830.)
(3)2016 (Z)HONG-LIU WUFrom CHRYSEOBACTERIUM SPThe 27 ketoreductases were called from the CA49 genome and screened to obtain CHKRED03, reaction of CHThe KRED03 is coupled with GDH to realize the biological synthesis method of the cofactor recycling system, and finally the substrate concentration of 200 G.L is realized in the reaction system added with methanol for assisting in dissolving-1The biotransformation of (1). (P)ROCESS BIOCHEMISTRY,2016,51(7):881-885.)
(4) 2017JINGJING CHENBy using Source CANDIDA PARAPSILOSISNostol dehydrogenase CPRCR and glucose dehydrogenase B derived from Bacillus megateriumMGDH in E.coli ROSETTA(DE3) Co-expression, the substrate concentration of 100 G.L was achieved in an organic-aqueous two-phase system using recombinant co-expressed whole cells-1The biotransformation of (1). (W)ORLD JOURNAL OFMICROBIOLOGY AND BIOTECHNOLOGY,2017,33(61):2-12.)
(5) 2017MENGYANH et al obtained Thermotoga maritima (T) by screening ketoreductase librariesHERMOTOGAMARITIMA) The catalytic process of the high-temperature-resistant ketoreductase AKR-43 also utilizes GDH in the biological synthesis method 2 to regenerate and recycle coenzyme, and realizes the substrate concentration of 200 G.L in an aqueous phase system added with isopropanol cosolvent-1The biotransformation of (1). (A)PPLIED BIOCHEMISTRY AND BIOTECHNOLOGY,2017,181(4):1304-1313.)
(6) L of 2017I-FENG CHENIsolated from Kluyveromyces marxianus ATCC 748 (K)LUYVEROMYCESMARXIANUSATCC 748) NADPH-dependent reductase (YGL039W) to produce (R) -N-BOC-3-hydroxypiperidine shows excellent catalytic activity, and cyclic coenzyme regeneration is carried out using GDH, and substrate concentration 400 G.L is achieved by adding isopropanol as a cosolvent to the reaction system-1The biotransformation of (1). (C)ATALYSIS COMMUNICATIONS,2017,97:5-9.)
(7) L of 2017I-FENG CHENIsolated by et al from Saccharomyces cerevisiae (S)ACCHAROMYCESCEREVISIAE) The NADPH-dependent reductase (YDR541C) was found to have excellent catalytic activity in production. Meanwhile, GDH is also adopted to construct coenzyme regeneration cycle, but serious product inhibition phenomenon is found in a single-aqueous phase reaction system, and finally a two-phase system of 1:1(V/V) ethyl caprylate and water is introduced to reduce product inhibition and realize substrate concentration of 240 G.L-1The biotransformation of (1). (T)ETRAHEDRONLETTERS, 2017,58(16):1644-1650.)
(8) 2017GAO-WEI ZHENGProtein engineered ketoreductase C of et alGKR1-F92C/F94W preparation of chiral alcohols with diverse structures, coenzyme circulation by coupling GDH, and substrate concentration of 100 G.L in a system with ethanol cosolvent-1The biotransformation of (1). (ACS C)ATALYSIS,2017,7(10):7174-7181.)
(9)X of 2018IANGXIAN YINGEt al, by genome mining, obtain reductase R capable of catalyzing chiral ketoneECR, derived from Rhodococcus erythropolis WZ010 (R)HODOCOCCUSERYTHROPOLISWZ010) and the authors explored REUse of CR in the synthesis of chiral alcohols. Finally, the authors make use of RECR mutant Y54F, using isooctanol as co-substrate to construct coenzyme cycle, realizing substrate concentration 300 G.L in isooctanol two-phase system-1The biotransformation of (1). (M)OLECULES,2018,23(3117):2-13.)
(10) Y in 2019ITONG CHENEt al T from ThermoanaerobacterBADH (THERMOANAEROBACTERBROCKII) Co-expressing with glucose dehydrogenase of Bacillus subtilis in Escherichia coli BL21(DE3), optimizing cell culture system, and realizing substrate concentration of 100 G.L in system added with methanol cosolvent-1The biotransformation of (1). (RSC A)DVANCES,2019,9(4):2325-2331.)
(11) Patent CN201310173088.2 discloses an asymmetric reduction of N-B by recombinant Ketoreductase (KRED) enzyme powderOC-3-piperidone, but no gene sequence or amino acid sequence of Ketoreductase (KRED) is disclosed. Patent CN201310054684.9 discloses asymmetric synthesis of (S) -1-tert-butoxycarbonyl-3-hydroxypiperidine by using alcohol dehydrogenase PAR, but the coenzyme circulation is performed by using an organic reagent isopropanol, and the organic reagent has great damage to the enzyme activity and obvious inhibition effect. Patent CN201610132936.9 discloses the use of carbonyl reductase RECR enzymes asymmetric reductone reductases (KRED), but the enzyme requires N-passageINTA purification and the two-phase reaction of sec-octanol and water are not favorable for scale-up production or the production cost is higher. Pichia pastoris P reported in patent CN108220358AICHIASIT2014 can be used as a biocatalyst for preparing (S) -NBHP, but the excessive addition of the catalyst increases the production cost. CN10822061A reports that ketoreductase MT-KRED is used for preparing (S) -NBHP, but expensive coenzyme is required to be added in the reaction process.
Although the ketoreductase reported above can be used for preparing (S) -NBHP, expensive coenzyme, large amount of enzyme and organic solvent are required in the reaction process, which is not favorable for the amplification application in the actual industry.
Disclosure of Invention
In order to solve the technical problem, the alcohol dehydrogenase KPADH carries out molecular modification, and the method for efficiently preparing the drug intermediate (S) -N-Boc-3-hydroxypiperidine is realized. The invention utilizes site-directed saturation mutagenesis to obtain the optimal mutant, and improves the stereoselectivity, the conversion rate and the substrate tolerance of NBPO.
The first purpose of the invention is to provide a high-efficiency preparation method of a heterocyclic drug intermediate, the method is to couple and catalyze a heterocyclic substrate to generate the heterocyclic drug intermediate by alcohol dehydrogenase mutant and glucose dehydrogenase, and the alcohol dehydrogenase mutant is to mutate tyrosine at 127 bit of an alcohol dehydrogenase female parent with an amino acid sequence shown as SEQ ID NO.2 into tryptophan.
Furthermore, the heterocyclic drug intermediate is (S) -N-Boc-3-hydroxypyrrolidine, (S) -N-Boc-3-hydroxypiperidine or N-Boc-4-hydroxypiperidine.
Further, the heterocyclic substrate is N-Boc-3-pyrrolidone, N-Boc-3-piperidone (NBPO) or N-Boc-4-piperidone.
Further, in the coupling catalysis process, glucose is added, and the molar mass ratio of the glucose to the NBPO is 1-2: 1.
Further, the mass ratio of the alcohol dehydrogenase mutant to the glucose dehydrogenase is 1-2: 1.
Furthermore, the addition amount of the alcohol dehydrogenase mutant and the glucose dehydrogenase is 3-5% of the mass of the NBPO.
Further, the loading capacity of the N-Boc-3-piperidone is 100-g.L-1
Further, the nucleotide sequence of the female parent of the alcohol dehydrogenase is shown in SEQ ID NO. 1.
Furthermore, the temperature of the coupling catalytic reaction is 25-35 ℃, and the pH value is 6.5-7.5.
The invention has the beneficial effects that:
(1) mutations of the inventionBody Y127W k compared to wild typecat/KmThe improvement is 21.5 times, the half-life period at 30 ℃ is up to 147 hours, and the improvement is 67 hours compared with the wild type.
(2) The mutant Y127W of the invention has improved catalytic efficiency and stereoselectivity for substrate with Boc group and carbonyl at C-3 position, and has improved catalytic efficiency and stereoselectivity for N-3-Boc-pyrrolidone compared with kcat/KmThe wild type is increased by 10.5 times, and the e.e. value is increased to 99.9% (S).
(3) The mutant Y127W of the invention can reduce the product inhibition effect in a single aqueous phase system without adding any cosolvent, so that the conversion rate can reach more than 99% within 12 h. The mutant Y127W is coupled with glucose dehydrogenase (BmGDH), under the optimal condition, a single aqueous phase system without any exogenous coenzyme and organic cosolvent is realized, the scale of 50mL is realized, and the substrate concentration is as high as 600 g.L01The catalyst loading was 3.3%. The e.e. value of the final product (S) -NBHP is as high as 99.4%, and the space-time yield is about 1400 g.L-1·d -1The purity of the product is 99.58%.
Drawings
FIG. 1 is an SDS-PAGE electrophoretic analysis M: protein marker; lanes 1& 2: pure and crude enzyme for KpADH; 3& 4: pure enzyme & crude enzyme of Y127A; 5& 6: pure enzyme & crude enzyme of Y127C; 7& 8: pure enzyme & crude enzyme of Y127F; 9& 10: pure enzyme & crude enzyme of Y127I; 11& 12: pure enzyme & crude enzyme of Y127M; 13& 14: pure enzyme & crude enzyme of Y127Q; 15& 16: crude & pure enzyme of Y127V; 17& 18: crude & pure enzyme of Y127W;
FIG. 2 shows the enzyme coupling construction of coenzyme cyclic regeneration synthesis of (S) -NBHP;
FIG. 3 is a diagram of the purity of the product.
Detailed Description
The present invention is further described below in conjunction with the following figures and specific examples so that those skilled in the art may better understand the present invention and practice it, but the examples are not intended to limit the present invention.
The enzyme activity determination method comprises the following steps: depending on the characteristic absorption peak of NAD (P) H at 340nm, ketoreductases will produce or consume NAD (P) H during the oxidation or reduction reaction. Thus, enzyme activity can be calculated indirectly using changes in NAD (P) H at 340 nm. One unit of enzyme activity (U) is defined as the amount of enzyme required to oxidize 1. mu. mol of NAD (P) H per minute under the above-mentioned conditions of activity measurement.
Reduction activity assay system:
Figure RE-GDA0002302526460000051
measurement System for Oxidation Activity:
Figure RE-GDA0002302526460000052
and (3) a liveness measuring process: the assay temperature was set at 30 ℃ and all buffers were preheated to 30 ℃. Substrate, coenzyme and buffer were added separately to clean 96 wells.
The concentration of the crude enzyme solution protein was measured by Bradford method, and the color of the protein-pigment conjugate was measured at 595nm based on the change of color of Coomassie brilliant blue G-250 after binding to the protein, and the absorbance was proportional to the concentration of the protein. With a concentration of 5 mg.L-1The BSA bovine serum standard protein is mother liquor, and the concentration interval of the prepared solution by gradient dilution is 0.01-0.12 mg.L-1Protein concentration of (a). Diluting the protein to be detected to the protein concentration standard range, sucking 20 μ L protein liquid, adding 180 μ L Coomassie brilliant blue, standing at 30 deg.C for 5min, and detecting at 595 nm. In order to reduce errors, the samples measured each time are measured together with the protein standard curve, a standard protein concentration curve is drawn, and the protein concentration of the sample to be measured is calculated according to the curve. 3 replicates were measured for each sample.
The concentration of the pure enzyme protein is determined according to the fact that most proteins have the maximum absorption peak at 280nm, and therefore concentration data can be directly obtained through a Nanodrop instrument. After the purified protein is concentrated and desalted, the molar extinction coefficient and the protein molecular weight of the protein are found by a website https:// web.expasy.org/protparam/the 5 microliter of pure enzyme solution is titrated on an instrument, and the protein concentration is read according to the molar extinction coefficient and the protein molecular weight. The protein is sequentially diluted by different times, and the determination results have good linear relation under different dilution times. The protein concentration of the pure enzyme can be obtained.
The conversion was analyzed by High Performance Liquid Chromatography (HPLC). The sample to be tested is extracted by ethyl acetate, dried by anhydrous sodium sulfate, evaporated by a vacuum concentrator and finally dissolved in the mobile phase. The analytical column was a C18 column (4.6X 250mm, Diamonsil, Shanghai DIKMA Co. Ltd.) and the mobile phase was 55% volume fraction acetonitrile and 45% volume fraction water. The detector wavelength was 210nm and the column temperature was 30 ℃. The stereoselective analytical column was a Superchiral S-AY column (4.6X 150mm, Shanghai Chiralway Biotech Co. Ltd.) with a mobile phase of 95% volume fraction n-hexane and 5% volume fraction ethanol. The detector wavelength was 210nm and the column temperature was 30 ℃.
Example 1:
the method for rationally mutating and constructing the key amino acid of the alcohol dehydrogenase KPADH comprises the following steps:
first, find out the key amino acid for controlling stereoselectivity and catalytic activity
Finding out the amino acid interacting with the substrate NBPO through the crystal structure (PDB:5Z2X) derived from Kluyveromyces alcohol dehydrogenase KPADH; and screening out a key amino acid residue 127 site through conservative analysis of amino acid alignment with more than 30% of homology.
Second, construction of mutants
Site-directed saturation mutagenesis was carried out on the 127 th amino acid of the alcohol dehydrogenase KPADH having an amino acid sequence shown in SEQ ID No.1 by a whole-plasmid PCR method using a pET28a-KPADH recombinant plasmid deposited in the laboratory as a template (described in the patent application publication No. CN 105936909A). And mutants Y127A, Y127C, Y127F, Y127I, Y127M, Y127Q, Y127V and Y127W with catalytic activity improved compared with that of WT are obtained through reduction activity determination and screening.
Example 2:
the mutant with improved catalytic activity was purified by inducible expression and subjected to kinetic assay according to example 1, which comprises the following steps:
first, inducible expression
The mutant of example 1 was inoculated into 50. mu.L/mL LB medium and cultured with shaking at 37 ℃ and 180 rpm. When OD600 reached 0.8, isopropyl-. beta. -D-thiogalactopyranoside (IPTG, 0.2M) was added to a final concentration of 0.2mM, and the temperature was lowered to 25 ℃ to induce protein expression. At the end of the incubation, the cells were harvested by centrifugation and sonicated in PBS buffer (pH 7.4). The cell lysate was centrifuged at 8000rpm for 30 min.
Secondly, protein purification
The method adopts a nickel column affinity chromatography, and according to the fact that the N end of KPADH is provided with a His-Tag label, the His-Tag label can be combined with nickel competitively, and two elution modes, namely gradient elution and linear elution, can be adopted. KPADH and its mutant could be eluted completely when the imidazole concentration reached 200mM during the gradient elution. After the purification, samples were collected and analyzed for the band of interest by SDS-PAGE, and the eluate was concentrated to give clear bands without contaminating proteins. The purification results are shown in FIG. 1.
Third, kinetic determination
The activity of the KpADH mutant was measured at different substrate concentrations and fitted to nonlinear regression of the michaelis equation using Origin software based on the activity and substrate concentration data, respectively. The results are shown in Table 2 for kinetic parameters of alcohol dehydrogenase KPADH mutant on NBPO. As is clear from Table 1, the catalytic efficiencies of mutants Y127C, Y127W and Y127Q (k)cat/Km) Compared with wild type, the wild type gene has the advantages of 7.9, 8.7 and 21.5 times higher activity.
Kinetic parameters of mutants at site 1127 in Table
Figure RE-GDA0002302526460000081
Fourth, determination of mutant stability
Purified KPADH and its mutant enzyme solution (protein concentration maintained at 1 mg. mL)-1Left and right) 1 mL of the solution is put into a 30 ℃ constant-temperature water bath kettle, and sampling is carried out at regular time to determine the activity. The activity of 0h is 100%, the specific activity is sequentially measured to obtain a curve changing along with time, and the time for the activity to be reduced to 50% is the curveHalf-life of the protein at 30 ℃. The half-life of WT, Y127C, Y127Q and Y127W were 80h, 24h, 26h and 147h, respectively. The mutant with the longest half-life at 30 ℃ was shown to be Y127W. Binding kinetic parameters finally Y127W was chosen as the target mutant for gram-scale production.
Example 3:
in order to explore the substrate spectrum of the heterocyclic ketone of the KpADH and the mutant, the substrate kinetics of the heterocyclic ketone of the KpADH and the mutant are respectively determined by selecting the heterocyclic ketone dihydro-3 (2H) -furanone, tetrahydrothiophene-3-ketone, cyclohexanone, 4-ethylcyclohexanone, N-Boc-3-pyrrolidone, N-Boc-2-piperidone, N-Boc-3-piperidone and N-Boc-4-piperidone. As shown in Table 2, catalytic activity was exhibited on all substrates except for the ortho-position N-Boc-2-piperidone substrate. Mutant Y127W in substrate spectra, k to substrate N-Boc-3-pyrrolidonecat/KmFrom 0.2s-1·mM-1Increased to 2.1s-1·mM-1And k to substrate 7acat/KmFrom 3.6s-1·mM-1Increased to 31.0s-1·mM-1. Meanwhile, the e.e. value of the two substrates is also improved to more than 99 percent. This indicates that mutant Y127W has improved catalytic efficiency specificity for substrates bearing a Boc group and a carbonyl group at the C-3 position. It also shows that 127 site on the substrate Boc group has a fine-tuning effect on stereoselectivity. Therefore, it is advantageous to select residues around the Boc group for mutation.
TABLE 2 kinetic analysis of the substrate spectra of KPADH and mutant Y127W for different heterocyclic ketones
Figure RE-GDA0002302526460000091
Example 4:
the mutants with improved catalytic activity were optimized systematically according to example 2, with the following steps:
optimization of one, different additives
We selected 3 systems (single aqueous phase system without solubilizing aid, aqueous phase system with 5% ethanol, two-phase system with 50% butyl acetate) to explore the optimal reaction system for mutant Y127W, using lyophilized enzyme powder of 35mg Y127W and 20mg BmGDH added to 10mL reaction system containing 1g substrate and 1.2g glucose. In the reaction process, freeze-dried enzyme powder and PBS 7.0 buffer solution are added firstly, the mixture is mechanically stirred evenly, and substrate and glucose are added at one time. It can be seen from Table 3 that the optimum reaction system for Y127W is a single aqueous phase system without any co-solvent.
TABLE 3 optimization of the catalytic System
Figure RE-GDA0002302526460000101
Second, optimization of different enzyme adding amount
Under the condition of no cosolvent and no additional coenzyme, the biotransformation concentration of NBPO is increased to 800 g.L-1To test the feasibility of the reaction at high concentrations of substrate. As shown in Table 4, as the concentration of the substrate increases, the ratio of the substrate to the catalyst also increases synchronously, and a large amount of the catalyst carries a large amount of the cofactor, which contributes to the improvement of the catalytic efficiency. Through the optimization of enzyme addition, the final selection of catalyst is 3.3% of the substrate addition, and the substrate concentration is 600 g.L-1Carrying out amplification reaction.
TABLE 4 optimization of enzyme addition
Figure RE-GDA0002302526460000102
Preparation of three, 50mL gram grade
The optimized 10mL reaction system was scaled up to 50mL using lyophilized enzyme powder of Y127W and BmGDH, containing 30g of substrate and 36g of glucose. In the reaction process, freeze-dried enzyme powder and PBS 7.0 buffer solution are added firstly, the mixture is mechanically stirred evenly, and substrate and glucose are added at one time. The process curves are shown in Table 5, and the 50mL reaction system is in agreement with the progress of the 10mL reaction system, without encountering the difficulties of the scale-up process and the product and substrate inhibition. The reaction was carried out at a conversion rate of 30% per hour in the early phase and already at 6h, the conversion rate was as high as 83.3%. The reaction rate gradually decreases with decreasing substrate concentration. After 10h, the conversion rate reaches 99.9%, which indicates that the mutant has the potential of continuously catalyzing NBPO. And the e.e. value is constant over 99% during the reaction, indicating that the e.e. value of the mutant is not affected by the reaction time or the concentration of the substrate product. After the reaction was completed for 12 hours, the reaction solution was collected.
TABLE 550 mL reaction progress
Reaction time (h) Conversion (%) e.e.(%)
2 38.1 99.4
4 63.9 99.4
6 83.3 99.4
8 96.9 99.4
10 99.9 99.4
12 100.0 99.4
Fourthly, extracting and nuclear magnetic identification of products
According to the distribution coefficient of the product in different organic phases, the dichloromethane with the highest distribution coefficient of the product is used for extraction. The collected reaction solution was left at 70 ℃ for 2h to denature part of the protein and reduce the emulsification during extraction. The reaction solution was extracted 3 times with 3 volumes of dichloromethane, and no serious emulsification was observed in the process. Collecting extract, volatilizing dichloromethane in a vacuum rotary evaporator in water bath at 30 ℃, increasing the temperature of the water bath to 50 ℃ after most of dichloromethane is volatilized, and volatilizing residual dichloromethane as far as possible. After the concentration, the product (S) -NBHP was obtained as a pale yellow solid after standing in a refrigerator at 4 ℃. Subjecting the product (S) -NBHP to nuclear magnetic NMR substance identification, gas chromatography purity identification, liquid chromatography stereoselectivity identification and polarimeter optical rotation identification. Nuclear magnetic results: 1H NMR (300MHz, CDCl3) δ 3.83-3.65 (m,2H),3.53(dd, J ═ 13.3,6.0Hz,1H), 3.17-2.98 (m,2H),2.03(s, 1H),1.86(dt, J ═ 12.4,8.5Hz,1H), 1.80-1.68 (m,1H), 1.57-1.36 (m, 11H). Optical rotation: [ α ]25D ═ 21.52(c 0.1 EtOH).
The above-mentioned embodiments are merely preferred embodiments for fully illustrating the present invention, and the scope of the present invention is not limited thereto. The equivalent substitution or change made by the technical personnel in the technical field on the basis of the invention is all within the protection scope of the invention. The protection scope of the invention is subject to the claims.
Sequence listing
<110> university of south of the Yangtze river
<120> high-efficiency preparation method of heterocyclic drug intermediate
<160> 2
<170> PatentIn version 3.3
<210> 1
<211> 1029
<212> DNA
<213> (Artificial sequence)
<400> 1
atgagcgtat taattagtgg tgcttctgga tacattgcca aacatatcgt cagagttctt 60
ttggaacaaa attacaaagt aattggtact gttagaagtc aagacaaagc tgataagtta 120
ttgaaacaat ataataatcc taatttgtct tatgaaattg tacctgaaat agcaaactta 180
gatgcttttg atgacatttt taagaaacat ggtaaggaaa taaaatatgt cattcatgca 240
gcttcaccag tgaacttcgg cgcaaaagat ttggaaaaag atttagttat tcctgccatt 300
aatggtacca agaatatgtt cgaagctatt aaaaagtatg ccccagatac tgtcgaacgt 360
gttgtaatga ctgcttctta tgcttcaatt atgaccccac atagacaaaa tgatccaact 420
ttaactttag atgaagaaac ttggaatcca gtaactgaag aaaatgctta tgaaaatgtc 480
ttcactgctt attgtgcttc aaaaactttt gctgaaaagg aagcttggaa gttcgttaaa 540
gaaaatagtg atgctgttaa gtttaaacta accactatcc acccatcctt cgttttcgga 600
cctcagaact ttgatgaaga cgtcactaag aaactaaatg aaacttgtga aattatcaat 660
ggtttattac atgctccatt tgacaccaaa gtcgaaaaga ctcacttcag tcaattcatt 720
gatgttcgtg atgtcgccaa aactcacgtt ttgggtttcc aaaaagatga attaatcaac 780
caaagattgt tattatgtaa cggcgccttc tctcaacaag atattgttaa tgtatttaat 840
gaagatttcc cagagttaaa aggccaattc ccaccagaag ataaggacac cgatttaaac 900
aaaggtgtaa caggttgtaa aattgataat gaaaagacta aaaaattatt agcatttgaa 960
tttactcctt tccataaaac aattcatgac actgtctatc aaattttaca taaagaaggt 1020
agagtttaa 1029
<210> 2
<211> 342
<212> PRT
<213> (Artificial sequence)
<400> 2
Met Ser Val Leu Ile Ser Gly Ala Ser Gly Tyr Ile Ala Lys His Ile
1 5 10 15
Val Arg Val Leu Leu Glu Gln Asn Tyr Lys Val Ile Gly Thr Val Arg
20 25 30
Ser Gln Asp Lys Ala Asp Lys Leu Leu Lys Gln Tyr Asn Asn Pro Asn
35 40 45
Leu Ser Tyr Glu Ile Val Pro Glu Ile Ala Asn Leu Asp Ala Phe Asp
50 55 60
Asp Ile Phe Lys Lys His Gly Lys Glu Ile Lys Tyr Val Ile His Ala
65 70 75 80
Ala Ser Pro Val Asn Phe Gly Ala Lys Asp Leu Glu Lys Asp Leu Val
85 90 95
Ile Pro Ala Ile Asn Gly Thr Lys Asn Met Phe Glu Ala Ile Lys Lys
100 105 110
Tyr Ala Pro Asp Thr Val Glu Arg Val Val Met Thr Ala Ser Tyr Ala
115 120 125
Ser Ile Met Thr Pro His Arg Gln Asn Asp Pro Thr Leu Thr Leu Asp
130 135 140
Glu Glu Thr Trp Asn Pro Val Thr Glu Glu Asn Ala Tyr Glu Asn Val
145 150 155 160
Phe Thr Ala Tyr Cys Ala Ser Lys Thr Phe Ala Glu Lys Glu Ala Trp
165 170 175
Lys Phe Val Lys Glu Asn Ser Asp Ala Val Lys Phe Lys Leu Thr Thr
180 185 190
Ile His Pro Ser Phe Val Phe Gly Pro Gln Asn Phe Asp Glu Asp Val
195 200 205
Thr Lys Lys Leu Asn Glu Thr Cys Glu Ile Ile Asn Gly Leu Leu His
210 215 220
Ala Pro Phe Asp Thr Lys Val Glu Lys Thr His Phe Ser Gln Phe Ile
225 230 235 240
Asp Val Arg Asp Val Ala Lys Thr His Val Leu Gly Phe Gln Lys Asp
245 250 255
Glu Leu Ile Asn Gln Arg Leu Leu Leu Cys Asn Gly Ala Phe Ser Gln
260 265 270
Gln Asp Ile Val Asn Val Phe Asn Glu Asp Phe Pro Glu Leu Lys Gly
275 280 285
Gln Phe Pro Pro Glu Asp Lys Asp Thr Asp Leu Asn Lys Gly Val Thr
290 295 300
Gly Cys Lys Ile Asp Asn Glu Lys Thr Lys Lys Leu Leu Ala Phe Glu
305 310 315 320
Phe Thr Pro Phe His Lys Thr Ile His Asp Thr Val Tyr Gln Ile Leu
325 330 335
His Lys Glu Gly Arg Val
340

Claims (8)

1. An efficient preparation method of a heterocyclic drug intermediate is characterized in that an alcohol dehydrogenase mutant and glucose dehydrogenase are coupled to catalyze a heterocyclic substrate to generate the heterocyclic drug intermediate, wherein the alcohol dehydrogenase mutant is obtained by mutating tyrosine at 127 th position of an alcohol dehydrogenase wild type shown in SEQ ID NO.2 in an amino acid sequence to tryptophan;
the heterocyclic substrate is N-Boc-3-pyrrolidone,N-Boc-3-piperidone orN-Boc-4-piperidone.
2. The method of claim 1, wherein said heterocyclic pharmaceutical intermediate is (S) -N-Boc-3-hydroxypyrrolidine, (S) -N-Boc-3-hydroxypiperidine orN-Boc-4-hydroxypiperidine.
3. The method of claim 1, wherein during the coupling catalysis, glucose is also added, said glucose being in contact withNThe molar mass ratio of the Boc-3-piperidone is 1-2: 1.
4. The method according to claim 1, wherein the mass ratio of the alcohol dehydrogenase mutant to the glucose dehydrogenase is 1-2: 1.
5. The method of claim 1, wherein the alcohol dehydrogenase mutant and the glucose dehydrogenase are added in amounts ofN3% -5% of the mass of the-Boc-3-piperidone.
6. The method of claim 1, wherein said step of removing is performed by a laserNThe concentration of (E) -Boc-3-piperidone was 100 g.L-1-600 g·L-1
7. The method of claim 1, wherein the nucleotide sequence of the alcohol dehydrogenase wild-type is shown in SEQ ID No. 1.
8. The method of claim 1, wherein the temperature of the coupling catalysis reaction is25oC -35oC, the pH value is 6.5-7.5.
CN201911120248.0A 2019-11-15 2019-11-15 Efficient preparation method of heterocyclic drug intermediate Active CN110777125B (en)

Priority Applications (1)

Application Number Priority Date Filing Date Title
CN201911120248.0A CN110777125B (en) 2019-11-15 2019-11-15 Efficient preparation method of heterocyclic drug intermediate

Applications Claiming Priority (1)

Application Number Priority Date Filing Date Title
CN201911120248.0A CN110777125B (en) 2019-11-15 2019-11-15 Efficient preparation method of heterocyclic drug intermediate

Publications (2)

Publication Number Publication Date
CN110777125A CN110777125A (en) 2020-02-11
CN110777125B true CN110777125B (en) 2021-08-31

Family

ID=69391596

Family Applications (1)

Application Number Title Priority Date Filing Date
CN201911120248.0A Active CN110777125B (en) 2019-11-15 2019-11-15 Efficient preparation method of heterocyclic drug intermediate

Country Status (1)

Country Link
CN (1) CN110777125B (en)

Families Citing this family (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN112481226B (en) * 2020-11-27 2022-05-24 江南大学 Alcohol dehydrogenase mutant and application thereof
CN113025588A (en) * 2021-03-30 2021-06-25 江南大学 Alcohol dehydrogenase KpADH mutant capable of catalyzing synthesis of piperidine compounds
CN114085783B (en) * 2021-11-17 2023-09-26 苏州百福安酶技术有限公司 Kluyveromyces marxianus and application thereof in catalyzing nicotinamide riboside to synthesize beta-nicotinamide mononucleotide
CN114410619B (en) * 2022-02-15 2023-12-15 东南大学成贤学院 Method for synthesizing (S) -N-Boc-hydroxy piperidine by immobilized biocatalyst

Citations (5)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN105274160A (en) * 2015-11-11 2016-01-27 南京工业大学 Method of preparing (S)-N-boc-3-piperidinol by enzymatic asymmetric reduction
CN105567716A (en) * 2014-10-08 2016-05-11 中国科学院微生物研究所 Applications of 1,2,4-butanetriol related protein in preparation of 1,2,4-butanetriol through biological method
AU2018200160A1 (en) * 2011-06-22 2018-02-01 Genomatica, Inc. Microorganisms for producing 1,4-butanediol and methods related thereto
KR20190008806A (en) * 2017-07-17 2019-01-25 서울대학교산학협력단 Transformed microorganism with enhanced productivity of lactic acid
CN109402076A (en) * 2018-10-30 2019-03-01 江南大学 A kind of Alcohol dehydrogenase mutant and its application in regenerating coenzyme

Family Cites Families (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN104531628B (en) * 2014-12-23 2018-10-30 凯莱英医药集团(天津)股份有限公司 Alcohol dehydrogenase mutant and its application
CN105861457B (en) * 2016-05-26 2019-10-08 无锡佰翱得生物科学有限公司 A kind of alcohol dehydrogenase enzyme mutant and the preparation method and application thereof that enzyme activity improves

Patent Citations (5)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
AU2018200160A1 (en) * 2011-06-22 2018-02-01 Genomatica, Inc. Microorganisms for producing 1,4-butanediol and methods related thereto
CN105567716A (en) * 2014-10-08 2016-05-11 中国科学院微生物研究所 Applications of 1,2,4-butanetriol related protein in preparation of 1,2,4-butanetriol through biological method
CN105274160A (en) * 2015-11-11 2016-01-27 南京工业大学 Method of preparing (S)-N-boc-3-piperidinol by enzymatic asymmetric reduction
KR20190008806A (en) * 2017-07-17 2019-01-25 서울대학교산학협력단 Transformed microorganism with enhanced productivity of lactic acid
CN109402076A (en) * 2018-10-30 2019-03-01 江南大学 A kind of Alcohol dehydrogenase mutant and its application in regenerating coenzyme

Non-Patent Citations (4)

* Cited by examiner, † Cited by third party
Title
"Engineering an Alcohol Dehydrogenase from Kluyveromyces polyspora for Efficient";Yanfei Wu等;《Advanced Synthesis & Catalysis》;20201211;第1-9页 *
"Hydroclassified Combinatorial Saturation Mutagenesis: Reshaping Substrate Binding Pockets of KpADH for Enantioselective Reduction of Bulky-Bulky Ketones";XU,G.C.等;《ACS CATALYSIS》;20180813;第8卷;第8336-8345页 *
"多功能醇脱氢酶的分子进化及在合成手性双芳基醇中的应用";许国超等;《第十二届中国酶工程学术研讨会》;20190811;第26页 *
"醇脱氢酶KpADH 的127 位点对催化活性和对映选择性的影响";朱诚等;《化工进展》;20190808;第38卷(第12期);第5504-5511页 *

Also Published As

Publication number Publication date
CN110777125A (en) 2020-02-11

Similar Documents

Publication Publication Date Title
CN110777125B (en) Efficient preparation method of heterocyclic drug intermediate
KR20200087220A (en) Method for producing taurorusodeoxycholic acid by bioconversion and its application
EP3150712B1 (en) Biotechnological methods for providing 3,4-dihydroxyphenyl compounds and methylated variants thereof
EP2034026A1 (en) Process for production of optically active alcohol
Gao et al. Biochemical characterization and substrate profiling of a new NADH-dependent enoate reductase from Lactobacillus casei
US20040248250A1 (en) Method for modifying enzyme and oxidoreductive variant
CN112877307B (en) Amino acid dehydrogenase mutant and application thereof
CN110423717A (en) Multienzyme recombinant cell and multienzyme cascade the method for catalyzing and synthesizing D-pantoyl lactone
CN110396508A (en) From the L- pantoic acid lactone dehydrogenase of Nocardia cyriacigeorgica and application
EP2980213B1 (en) Modified carbonyl reducing enzyme and gene
Wang et al. Discovery of a new NADPH-dependent aldo-keto reductase from Candida orthopsilosis catalyzing the stereospecific synthesis of (R)-pantolactone by genome mining
CN108410831B (en) Ketoacid reductase, gene, engineering bacterium and application in synthesis of chiral aromatic 2-hydroxy acid
Xu et al. Efficient biosynthesis of (2S, 3R)-4-methylsulfonylphenylserine by artificial self-assembly of enzyme complex combined with an intensified acetaldehyde elimination system
Lin et al. Enantioselective synthesis of (S)-phenylephrine by whole cells of recombinant Escherichia coli expressing the amino alcohol dehydrogenase gene from Rhodococcus erythropolis BCRC 10909
CN114277006B (en) Alcohol dehydrogenase and application thereof in synthesis of chiral heterocyclic alcohol
CN116814572A (en) Carbonyl reductase and mutant thereof and application of carbonyl reductase and mutant in preparation of chiral (R) -8-chloro-6-hydroxy ethyl octanoate
Tang et al. Structure-guided evolution of carbonyl reductase for efficient biosynthesis of ethyl (R)-2-hydroxy-4-phenylbutyrate
CN110396507A (en) L- pantoic acid lactone dehydrogenase from Cnuibacter physcomitrellae
CN113652407B (en) Carbonyl reductase mutant and application thereof in asymmetric synthesis of chiral compound
CN107779459B (en) Glucose dehydrogenase DNA molecule, vector, strain and application
Jiang et al. Catalytic site analysis and characterization of a solvent-tolerant aldo-keto reductase
CN110396506A (en) From the L- pantoic acid lactone dehydrogenase of Nocardia asteroides and its application
CN113913399B (en) Ketopantolactone reductase from Candida maltosa Xu316
CN114085820B (en) Ketopantolactone reductase from Candida viswanathii
Tang et al. Efficient Production of 3‐Amino‐2‐Hydroxy Acetophenone by Multi‐Enzyme Biosynthesis

Legal Events

Date Code Title Description
PB01 Publication
PB01 Publication
SE01 Entry into force of request for substantive examination
SE01 Entry into force of request for substantive examination
GR01 Patent grant
GR01 Patent grant