Detailed Description
The invention discloses a xylanase mutant, which can be realized by appropriately improving process parameters by the technical personnel in the field by referring to the content. It is expressly intended that all such similar substitutes and modifications which would be obvious to one skilled in the art are deemed to be included in the invention. While the methods and applications of this invention have been described in terms of preferred embodiments, it will be apparent to those of ordinary skill in the art that variations and modifications in the methods and applications described herein, as well as other suitable variations and combinations, may be made to implement and use the techniques of this invention without departing from the spirit and scope of the invention.
The invention will now be described in detail by way of reference only using the definitions and examples given below. Unless defined otherwise herein, all technical and scientific terms used herein have the same meaning as commonly understood by one of ordinary skill in the art to which this invention belongs. DICTIONARY OF MICROBIOLOGY AND MOLECULAR BIOLOGY, second edition, by Singleton et al, John Wiley AND Sons, 1994, AND THE HARPER COLLINS DICTIONARY OF BIOLOGY, by Hale AND Marham, by Harper Perennial, New York, 1991, provide the artisan with a comprehensive DICTIONARY OF many OF the terms used in this invention. Although any materials and methods similar or equivalent to those described herein can be used in the practice or testing of the present invention, the preferred methods and materials are described. Numerical ranges include the numbers defining the range. Unless otherwise indicated, nucleic acids are written from left to right in the 5 'to 3' direction, respectively; amino acid sequences are written from left to right in the amino to carboxyl direction. In particular, the practitioner can refer to Sambrook et al, 1989 and Ausubel FM et al, 1993 to understand the definitions and terminology in the art. It is to be understood that this invention is not limited to the particular methodology, protocols, and reagents described, as these may vary.
The headings provided herein are not limitations of the various aspects and embodiments of the invention which can be had by reference to the specification as a whole. Accordingly, the terms defined below are more fully defined by reference to the specification as a whole.
As used herein, the term "expression" refers to the process of producing a polypeptide based on the nucleic acid sequence of a gene. The process includes transcription and translation.
As used herein, the term "gene" means a DNA segment involved in the production of a polypeptide chain, which may or may not include regions preceding or following the coding region.
As used herein, "enzyme" refers to a protein or polypeptide that catalyzes a chemical reaction.
As used herein, the term "activity" refers to a biological activity associated with a particular protein, such as an enzymatic activity associated with a protease. Biological activity refers to any activity that one of skill in the art would ordinarily attribute to the protein.
As used herein, the term "xylanase" refers to a glycosyl hydrolase that hydrolyzes the β -1, 4-linked xylopyranoside chain.
As used herein, "point mutations" refers to changes in a single nucleotide in DNA, particularly where such changes would result in a change in a protein.
As used herein, "mutant" refers to a type of organism or protein that is different from the wild type. Such changes can be effected by methods known to those skilled in the art, for example, by point mutations, where the resulting protein can then be referred to as mutants.
As used herein, "modified" refers to a sequence, such as an amino acid sequence comprising a polypeptide, that includes deletions, insertions, substitutions or truncations to the naturally occurring sequence.
As used herein, "substituted" shall mean a substitution to a naturally occurring residue.
As used herein, "Specific Activity" refers to the number of units of enzyme Activity per weight of protein, generally expressed as U/mg protein.
The experimental materials and reagents used in the specific examples of the present invention are as follows:
bacterial strain and carrier: coli DH5 α, Pichia pastoris GS115, vector pPIC9K, Amp, G418 were purchased from Invitrogen.
Enzyme and kit: PCR enzymes and ligases were purchased from Takara, restriction enzymes from Fermentas, plasmid extraction kits and gel purification recovery kits from Omega, GeneMorph II random mutagenesis kit from Beijing Bomais Biotechnology Ltd.
The formula of the culture medium is as follows:
coli medium (LB medium): 0.5% yeast extract, 1% peptone, 1% NaCl, ph 7.0);
LB-AMP Medium: adding 100 mu g/mL ampicillin into LB culture medium;
yeast medium (YPD medium): 1% yeast extract, 2% peptone, 2% glucose;
yeast screening medium (MD medium): 2% glucose, 2% agarose, 1.34% YNB, 4X 10-5Biotin;
BMGY medium: 2% peptone, 1% yeast extract, 100mM potassium phosphate buffer (pH6.0), 1.34% YNB, 4X 10-5Biotin, 1% glycerol;
BMMY medium: 2% peptone, 1% yeast extract, 100mM potassium phosphate buffer (pH6.0), 1.34% YNB, 4X 10-5Biotin, 0.5% methanol.
The present invention will be described in detail with reference to examples.
Example 1 screening of high specific Activity xylanase mutants
In order to further improve the specific activity of the heat-resistant xylanase Xyn1 (the nucleotide sequence is SEQ ID NO:2, and the coded amino acid sequence is SEQ ID NO: 1), the applicant screens a large number of mutations of the xylanase by a directed evolution technology.
Taking Xyn1 gene as a template, carrying out PCR amplification by using primers Xyn-F1 and Xyn-R1 in example 1 and using a GeneMorph II random mutation PCR kit (Stratagene), carrying out gel recovery on PCR products, carrying out enzyme digestion treatment on EcoRI and Not I, connecting the PCR products with pET21a carriers subjected to the same enzyme digestion, transforming the PCR products into escherichia coli BL21(DE3), coating the escherichia coli BL21 in an LB + Amp plate, carrying out inversion culture at 37 ℃, after transformants appear, picking the escherichia coli in a 96-well plate one by using toothpicks, adding 150ul LB + Amp culture medium containing 0.1mM IPTG into each well, carrying out culture at 37 ℃ and 220rpm for about 6 hours, centrifuging, discarding supernatant, carrying out resuspension on thalli by using buffer solution, and repeatedly freezing and thawing to obtain an escherichia coli cell lysate containing xylanase.
Respectively taking out 30ul of lysate to two new 96-well plates; adding 30ul of substrate into a 96-well plate, reacting at 37 ℃ for 30min, determining the generated reducing sugar by using a DNS method, adding 150ul of Coomassie brilliant blue solution into the other plate, standing for 10min, determining the protein content by using a Coomassie brilliant blue (Bradford) combination method, and respectively calculating the enzyme activity levels and the protein content of different mutagens. Finally, applicants screened mutation sites that significantly improved the specific activity of xylanase mutant Xyn1 from more than twenty thousand transformants: F13Y, S79T.
The xylanase mutant containing F13Y point mutation is named as Xyn1-13, and the amino acid sequence of the xylanase mutant is SEQ ID NO:3, obtaining a coding nucleotide sequence of SEQ ID NO: 4;
the xylanase mutant containing S79T point mutation is named as Xyn1-79, and the amino acid sequence of the xylanase mutant is SEQ ID NO: and 5, obtaining a coding nucleotide sequence of SEQ ID NO: 6.
the xylanase mutant containing two mutations of F13Y and S79T is named as Xyn1-13/79, and the amino acid sequence of the xylanase mutant is SEQ ID NO: and 7, obtaining a coding nucleotide sequence of SEQ ID NO: 8.
the nucleotide sequence of the xylanase mutant is synthesized by Shanghai Czeri organism.
Example 2 construction of Pichia engineering Strain
The xylanase mutant gene Xyn1-13/79 fragment obtained above is connected with an expression vector pPIC9K through EcoRI and Not I sites to construct an expression vector pPIC9K-Xyn 1-13/79.
Linearizing the mutant expression plasmid by Sal I, transforming Pichia pastoris GS115 by the linearized fragment of the expression plasmid through an electroporation method, respectively screening Pichia pastoris recombinant strains GS115/pPIC9K-Xyn1-13/79 on an MD plate, and then screening multicopy transformants on YPD plates containing different concentrations of geneticin.
The screened positive transformant of the recombinant expression xylanase mutant Xyn1-13/79 is named as Pichia pastoris Xyn1-13/79(Pichia pastoris Xyn1-13/79), and then is transferred into a BMGY culture medium, and is subjected to shaking culture at 30 ℃ and 250rpm for 1 d; then transferring the strain into a BMMY culture medium, and carrying out shaking culture at 30 ℃ and 250 rpm; adding 0.5% methanol every day to induce expression for 4 d; centrifuging to remove thalli to obtain fermentation supernatant containing xylanase mutants; the xylanase mutant Xyn1-13/79 in the fermentation supernatant is analyzed by SDS-PAGE electrophoresis detection, and the molecular weight of the xylanase mutant is about 20.7 kDa.
Xylanase gene Xyn1, xylanase single-point mutant genes Xyn1-13 and Xyn1-79 are respectively cloned into a Pichia pastoris GS115 host by the same enzyme digestion connection method, and Pichia pastoris engineering bacteria for recombining and expressing the xylanase are constructed and named as Pichia pastoris Xyn1(Pichia pastoris Xyn1), Pichia pastoris Xyn1-13(Pichia pastoris Xyn1-13) and Pichia pastoris Xyn1-79(Pichia pastoris Xyn 1-79). Horizontally fermenting the pichia pastoris engineering bacteria in a shaking bottle, and carrying out shaking culture at 30 ℃ and 250 rpm; adding 0.5% methanol every day to induce expression for 4 days; and (3) centrifuging to remove bacteria to respectively obtain fermentation supernatants containing xylanase Xyn1, Xyn1-13 and Xyn 1-79.
(1) Definition of xylanase Activity units
The enzyme amount required for releasing 1 mu mol of reducing sugar from 5mg/ml xylan solution per minute at 37 ℃ and pH5.5 is an enzyme activity unit U.
(2) Enzyme activity determination method
Taking 2ml of xylan substrate with the concentration of 1% (prepared by a pH5.5 acetic acid-sodium acetate buffer solution), adding the xylan substrate into a colorimetric tube, balancing for 10min at 37 ℃, adding 2ml of acidic xylanase enzyme solution which is properly diluted by the pH5.5 acetic acid-sodium acetate buffer solution and well balanced at 37 ℃, uniformly mixing, and accurately preserving the temperature at 37 ℃ for reaction for 30 min. After the reaction was completed, 5ml of DNS reagent was added and mixed well to terminate the reaction. Boiling in boiling water bath for 5min, cooling to room temperature with tap water, adding distilled water to constant volume to 25ml, mixing, and measuring absorbance AE at 540nm with standard blank as blank control.
The enzyme activity calculation formula is as follows:
in the formula: xDFor the activity of xylanase in the diluted enzyme solution, U/ml; a. theEThe absorbance of the enzyme reaction solution; a. theBThe absorbance of the enzyme blank liquid; k is the slope of the standard curve; c0Is the intercept of the standard curve; m is the molar mass of xylose, 150.2 g/mol; t is enzymolysis reaction time, min; n is the dilution multiple of enzyme solution; 1000 is conversion factor, 1mmol ═ 1000 μmol.
(3) Results of enzyme Activity measurement
And respectively detecting the xylanase enzyme activity in the fermentation supernatant of the pichia pastoris engineering bacteria according to the method. The results show that: the enzyme activities of fermentation supernatants of the pichia pastoris Xyn1, the pichia pastoris Xyn1-13, the pichia pastoris Xyn1-79 and the pichia pastoris Xyn1-13/79 are respectively 115U/mL, 107U/mL, 121U/mL and 130U/mL.
(4) Protein content determination method
The Coomassie brilliant blue (Bradford) binding method for determining protein content is a combined method of a colorimetric method and a pigment method. Coomassie Brilliant blue G-250 is reddish brown in acidic solution, turns blue when combined with protein, conforms to beer's law in a certain concentration range of protein, and can be measured colorimetrically at 595 nm. Absorbing a large amount of the active ingredients within 3-5 minutes, and stabilizing for at least 1 hour. Within the range of 10-1000 mug/mL, the light absorption value is in direct proportion to the protein concentration.
According to the volume ratio of the enzyme solution to the Coomassie brilliant blue solution of 1: 5, standing for 10 mm, and measuring the protein content by Coomassie brilliant blue (Bradford) binding method
(5) Protein content measurement results
And respectively detecting the xylanase protein content in the fermentation supernatant of the pichia pastoris engineering bacteria according to the method. The results show that: the protein contents of the fermentation supernatants of the pichia pastoris Xyn1, the pichia pastoris Xyn1-13, the pichia pastoris Xyn1-79 and the pichia pastoris Xyn1-13/79 are respectively 0.15mg/mL, 0.12mg/mL, 0.13mg/mL and 0.12 mg/mL.
(6) Calculation of specific Activity
"Specific Activity" means: the number of units of enzyme activity per weight of protein is generally expressed as U/mg protein. In general, the higher the specific activity of the enzyme, the purer the enzyme.
Specific activity calculation formula: specific activity (U/mg) ═ enzyme activity (U/mL)/protein content (mg/mL)
The specific calculation results are shown in table 1.
TABLE 1 comparison of specific Activity of xylanase mutants
Mutants
|
Enzyme activity (U/mL)
|
Protein content (mg/mL)
|
Specific activity (U/mg)
|
Xyn1
|
115
|
0.15
|
766.7
|
Xyn1-13
|
107
|
0.12
|
891.7
|
Xyn1-79
|
121
|
0.13
|
930.8
|
Xyn1-13/79
|
130
|
0.12
|
1083.3 |
As can be seen from the results in Table 1, compared with xylanase Xyn1, the specific activities of the xylanase mutants Xyn1-13, Xyn1-79 and Xyn1-13/79 provided by the invention are generally improved by 16.30% -41.29%. The xylanase mutant Xyn1-13/79 containing two point mutations of F13Y and S79T has the highest specific activity which reaches 1083.3U/mg, and is respectively improved by 21.5% and 16.4% compared with xylanase mutants Xyn1-13 and Xyn1-79, thereby achieving unexpected technical effects.
Example 3 fermentation validation
Fermentation of pichia pastoris Xyn1 and pichia pastoris Xyn1-13/79 is respectively carried out on a 10-liter fermentation tank, and the formula of a culture medium used for fermentation is as follows: 1.1g/L of calcium sulfate, 5.5g/L of potassium dihydrogen phosphate, 55g/L of ammonium dihydrogen phosphate, 20.3g/L of potassium sulfate, 16.4g/L of magnesium sulfate, 1.65g/L of potassium hydroxide and 0.05% of defoaming agent.
The fermentation production process comprises the following steps: the pH value is 5.0, the temperature is 30 ℃, the stirring speed is 300rpm, the ventilation volume is 1.0-1.5 (v/v), and the dissolved oxygen is controlled to be more than 20%.
The whole fermentation process is divided into three stages: the first stage is a thallus culture stage, seeds are inoculated according to the proportion of 7 percent, and the mixture is cultured for 24-26 h at the temperature of 30 ℃ with the mark of complete glucose supplementation; the second stage is a starvation stage, when the glucose is supplemented, no carbon source is added, when the dissolved oxygen rises to more than 80%, the stage is ended, and the period is about 30-60 min; the third stage is an induction expression stage, methanol is fed for induction, dissolved oxygen is kept to be more than 20%, and the culture time is 150-180 h. After the fermentation is finished, the fermentation liquor is processed by a plate and frame filter to obtain a crude enzyme liquid.
The xylanase enzyme activity and protein content determination method of embodiment 2 is adopted to detect the enzyme solution, and the result shows that the final fermentation enzyme activity of pichia pastoris Xyn1 for recombinant expression of xylanase Xyn1 is 6020U/ml, and the fermentation enzyme activity of pichia pastoris Xyn1-13/79 for recombinant expression of mutant Xyn1-13/79 is 9954U/ml.
The protein content identification is carried out after the enzyme solution is respectively diluted to 500U/ml, and the results show that the protein content in the pichia pastoris Xyn1 and Xyn1-13/79 fermentation enzyme solution is respectively 0.5mg/ml and 0.35 mg/ml. The results of the specific activity calculations are shown in Table 2.
TABLE 2 comparison of specific Activity of xylanase mutants
Mutants
|
Enzyme activity (U/mL)
|
Protein content (mg/mL)
|
Specific activity (U/mg)
|
Xyn1
|
500
|
0.5
|
1000
|
Xyn1-13/79
|
495
|
0.35
|
1414.3 |
The results in Table 2 show that the specific activity of the xylanase Xyn1 introduced with the screened 2 mutation sites F13Y and S79T can be remarkably improved and reaches 1414.3U/mg. The xylanase mutant has improved specific activity, is beneficial to reducing the production cost of xylanase, accelerates the wide application of the xylanase in the field of feed, and has wide market prospect.
Besides Pichia pastoris, the applicant further transforms genes of xylanase Xyn1 and the mutants Xyn1-13, Xyn1-79 and Xyn1-13/79 into Trichoderma reesei (Trichoderma reesei) or Aspergillus niger (Aspergillus niger) host cells respectively to construct recombinant strains for recombinant expression of xylanase Xyn1 and the mutants, respectively detects the enzyme activity and protein content of the xylanase in fermentation liquor after fermentation under the same conditions, and calculates and compares the specific activities. The results show that the specific activities of the obtained mutant proteins Xyn1-13, Xyn1-79 and Xyn1-13/79 are all obviously higher than those of xylanase Xyn1, wherein the specific activity of the mutant Xyn1-13/79 is the highest, and unexpected technical effects are achieved.
The foregoing is only a preferred embodiment of the present invention, and it should be noted that, for those skilled in the art, various modifications and decorations can be made without departing from the principle of the present invention, and these modifications and decorations should also be regarded as the protection scope of the present invention.
Sequence listing
<110> Islands blue biological group Co Ltd
<120> high specific activity xylanase mutant
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Gly Trp Asn Pro Gly Thr Lys Asn Lys Val Ile Asn Phe Ser Gly Ser
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Tyr Asn Pro Asn Gly Asn Ser Tyr Leu Ser Val Tyr Gly Trp Ser Arg
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Pro Ser Thr Gly Ala Thr Lys Leu Gly Glu Val Thr Cys Asp Gly Ser
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Val Tyr Asp Ile Tyr Arg Thr Gln Arg Val Asn Gln Pro Ser Ile Ile
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Gly Thr Ala Thr Phe Tyr Gln Tyr Trp Ser Val Arg Arg Asn Lys Arg
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Ser Ser Gly Ser Val Asn Thr Ala Cys His Phe Asn Ala Trp Ala Gln
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Phe Gly Leu Thr Leu Gly Thr Met Asp Tyr Gln Ile Val Ala Val Glu
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tcaggaaatt tcgtcggagg taaaggatgg aacccaggaa ctaagaataa ggtcattaac 180
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Gly Thr Ala Thr Phe Tyr Gln Tyr Trp Ser Val Arg Arg Asn Lys Arg
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Trp Asn Asp Gly His Gly Gly Val Thr Tyr Thr Asn Gly Pro Gly Gly
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Gly Trp Asn Pro Gly Thr Lys Asn Lys Val Ile Asn Phe Ser Gly Ser
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Tyr Asn Pro Asn Gly Asn Ser Tyr Leu Ser Val Tyr Gly Trp Thr Arg
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Gly Thr Ala Thr Phe Tyr Gln Tyr Trp Ser Val Arg Arg Asn Lys Arg
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Trp Asn Asp Gly His Gly Gly Val Thr Tyr Thr Asn Gly Pro Gly Gly
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Gly Trp Asn Pro Gly Thr Lys Asn Lys Val Ile Asn Phe Ser Gly Ser
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Tyr Asn Pro Asn Gly Asn Ser Tyr Leu Ser Val Tyr Gly Trp Thr Arg
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Asn Pro Leu Ile Glu Tyr Tyr Ile Val Glu Asn Phe Gly Thr Tyr Asn
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Gly Thr Ala Thr Phe Tyr Gln Tyr Trp Ser Val Arg Arg Asn Lys Arg
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Phe Gly Leu Thr Leu Gly Thr Met Asp Tyr Gln Ile Val Ala Val Glu
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tcaggaaatt tcgtcggagg taaaggatgg aacccaggaa ctaagaataa ggtcattaac 180
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cgtaacaagc gtagctccgg ttccgtcaac accgcatgtc atttcaatgc ttgggcccaa 480
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