CN110101362B - Method for removing image noise related to OCT and OCTA - Google Patents
Method for removing image noise related to OCT and OCTA Download PDFInfo
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Abstract
The invention belongs to the technical field of medical image processing, and particularly relates to an image noise removing method for OCT (optical coherence tomography) and OCTA (optical coherence tomography), which is used for eyeball micro-motion noise in en face images of the OCT and OCTA. The method comprises the following steps: step S1, extracting a frequency domain image; step S2, removing stripe information in the frequency domain image to obtain a de-noised frequency domain image; and step S3, reconstructing a denoised image based on the denoised frequency domain image. The eyeball micromotion noise is a bright short line in the en face image in the horizontal direction, and the horizontal micromotion artifact can be extracted from the image in the two-dimensional transform domain. According to the technical scheme, the face OCTA image is converted or decomposed to obtain a frequency domain image, then the frequency domain image is denoised by a filter, and finally the noise-removed angiography image is reconstructed based on the denoised frequency domain image.
Description
Method for removing image noise related to OCT and OCTA
Technical Field
The invention belongs to the technical field of medical image processing, and particularly relates to an image noise removing method for OCT (optical coherence tomography) and OCTA (optical coherence tomography), which is used for eyeball micro-motion noise in en face images of the OCT and OCTA.
Background
Optical Coherence Tomography Angiography (OCTA) is a non-invasive angiographic imaging technique that has been widely used in recent years for the study and diagnosis of diseases in the fundus region. However, OCTA requires a longer acquisition duration than photography-based modes (such as slit lamps and fundus cameras). Domestic and foreign research shows that human eyes are in a micro-motion state when observing scenes, and the micro-motion has three modes: high frequency flutter, drift motion and flicker. Therefore, the micro-motion of the eyeball during the acquisition process becomes a main source of image artifacts, and the generated horizontal bright short lines can seriously affect the accuracy of quantitative analysis and medical diagnosis.
At present, great efforts have been made to eliminate motion artifacts in the OCTA on the hardware systems of the OCTA. For example, an invention patent granted publication No. CN102085093B, publication No. 2013, 11/27, relates to an image processing apparatus for processing a tomographic image of an eye to be examined, which generates a high-resolution low-noise tomographic image while minimizing the influence of an eye-jiggling, a head movement, and the like. A detection unit for detecting a movement amount of an eye by using a signal obtained by photographing a tomographic image, and a determination unit for determining a scanning beam used for photographing the tomographic image based on the movement amount detected by the detection unit are included.
The method of combining the acquisition system of the OCTA with the eye tracking mode (such as Scanning Laser Ophthalmoscope (SLO)) can effectively reduce the blood vessel discontinuity and the volume motion noise, which has become a standard set of most commercial OCTA systems. However, ocular twitter noise in the form of bright dashes along the fast scan direction still appears on many clinical datasets. Therefore, the extraction and quantification of blood vessel related features may be affected by such noise, which further introduces inaccuracies to the analysis and diagnosis of eye diseases.
Unlike isotropic and randomly distributed noise, such as pepper noise and speckle noise, eye jiggle noise has strong directivity, and thus may not be suitable for conventional denoising methods, such as Kalman filtering. Fourier Transform (FT) is the transformation of an image from the spatial domain into the frequency domain, and then the required processing of the image in the frequency domain with the relevant filters. Fourier transforms can address many image processing requirements with their time and frequency domain methods. Wavelet Transform (WT) is variable in frequency and position in terms of image denoising, sometimes with frequency locality. After wavelet transform, the image is mainly concentrated on a few wavelet coefficients with larger absolute amplitudes, and noise is scattered on some wavelet coefficients with smaller absolute amplitudes, so that the wavelet coefficients can be denoised by utilizing a shrinkage threshold, and the purpose of denoising is achieved.
The Contourlet transform is a multi-scale geometric analysis tool, is a two-dimensional representation method of images in the true sense, has good multi-resolution, localization, directivity and other excellent characteristics, extends the advantages of wavelets to a high-dimensional space, can better depict the characteristics of high-dimensional information, and is more suitable for processing the information with hyperplane singularity. The non-subsampled contourlet transform (NSCT) is a non-subsampled, multi-scale transform with translational invariance, and its anisotropic contourlet basis gives NSCT the line singularity advantage of characterizing images. The NSCT can provide more abundant time domain information and accurate frequency localization information, elements in each image sub-band coefficient are in one-to-one correspondence with pixels in an image space domain, edge information in the image space domain is easily and directly detected by using the distribution rule of the NSCT domain coefficient, and operations such as reconstruction are not needed.
Disclosure of Invention
The invention provides an OCT (optical coherence tomography) and OCTA (optical coherence tomography) image noise removal method based on WT multi-scale advantages, NSCT multi-directional advantages and a Fourier filter.
A method of image noise removal for OCT and OCTA comprising:
step S1, extracting a frequency domain image;
step S2, removing stripe information in the frequency domain image to obtain a de-noised frequency domain image;
and step S3, reconstructing a denoised image based on the denoised frequency domain image.
The eyeball micromotion noise is a bright short line in the en face image in the horizontal direction, and the horizontal micromotion artifact can be extracted from the image in the two-dimensional transform domain. According to the technical scheme, the face OCTA image is converted or decomposed to obtain a frequency domain image, then the frequency domain image is denoised by a filter, and finally the noise-removed angiography image is reconstructed based on the denoised frequency domain image.
Preferably, the step S1 includes a step S1-1 of performing a two-dimensional fourier transform. To convert the image from the spatial domain to the frequency domain.
Preferably, the step S1-1 is preceded by a step S1-0 of extracting a horizontal sub-band image containing stripe information; in step S1-1, the horizontal subband image is subjected to two-dimensional fourier transform. And extracting a horizontal sub-band image containing stripe information, performing two-dimensional Fourier transform, and then performing frequency domain denoising, so that useful information in an original image can be better reserved.
Preferably, the wavelet decomposition with the maximum number of times of L is performed in the step S1-0Wherein(ii) a In the step S1-1, the horizontal sub-band image containing the stripe information is processedAnd carrying out two-dimensional Fourier transform to obtain the frequency domain image. Wavelet transformation and Fourier filter are combined to construct a fast, strong and stable filter for eliminating horizontal stripes of images, and the micromotion artifacts and the original characteristics are strictly separated, so that not only can unnecessary structures be inhibited, but also the information of the original images can be highly stored;
preferably, the step S1-0 includes: step S1-0-1, performing nonsubsampled contourlet decomposition to obtain a high-pass sub-band image and a low-pass sub-band image; step S1-0-2, the low pass sub-band image is processedDecomposing the non-downsampling contourlet for m times to obtain m high-frequency sub-band images; step S1-0-3, performing non-down sampling directional filter bank decomposition on the m high frequency sub-band images to obtain horizontal sub-band imagesAnd vertical subband imagesWherein(ii) a In the step S1-1, the horizontal sub-band image containing the stripe information is processedAnd carrying out two-dimensional Fourier transform to obtain the frequency domain image. The non-downsampled contourlet domain has the best performance in terms of noise cancellation and vessel preservation.
Preferably, the step S2 includes: step S2-1, the zero frequency point of the frequency domain image is moved to the middle of the frequency spectrum; step S2-2, multiplying by a Gaussian damping function; and S2-3, restoring the zero frequency point.
Preferably, in step S3, the denoised image is obtained by performing two-dimensional inverse fourier transform.
Preferably, the step S3 includes: step S3-1, performing two-dimensional inverse Fourier transform to obtain a denoised sub-band image(ii) a Step S3-2, wavelet reconstruction is carried outAnd obtaining the denoised image.
Preferably, the step S3 includes: step S3-1, performing two-dimensional inverse Fourier transform to obtain a denoised sub-band image(ii) a Step S3-2, based on the denoised sub-band imageAnd performing non-subsampled contourlet reconstruction to obtain the denoised image. The frequency domain denoising processing of the Fourier filter can keep the sharpness of the image edge; the two-dimensional transform domain Fourier filter can effectively eliminate eyeball micro-motion noise of the en face image; the two-dimensional transform domain Fourier filter provides a better visualization effect for the en face image object, and does not introduce additional artifacts into the restored image; two-dimensional transform domain fourier filter techniques would be beneficial for quantification of vessel-related analysis and diagnosis.
Preferably, the step S1 is preceded by an image preprocessing step S0, and the step S0 includes: step S0-1, converting the image into a gray image; and step S0-2, normalization processing.
The invention has the following beneficial effects:
1. the frequency domain denoising processing of the Fourier filter can keep the sharpness of the image edge;
2. the two-dimensional transform domain Fourier filter can effectively eliminate eyeball micro-motion noise of the en face image;
3. the two-dimensional transform domain Fourier filter provides a better visualization effect for the en face image object, and does not introduce additional artifacts into the restored image;
4. wavelet transformation and Fourier filter are combined to construct a fast, strong and stable filter for eliminating horizontal stripes of images, and the micromotion artifacts and the original characteristics are strictly separated, so that not only can unnecessary structures be inhibited, but also the information of the original images can be highly stored;
5. the non-downsampling contourlet domain has the best performance in the aspects of noise elimination and blood vessel preservation;
6. two-dimensional transform domain fourier filter techniques would be beneficial for quantification of vessel-related analysis and diagnosis.
Drawings
FIG. 1 illustrates the steps of the imaging method of the present invention;
fig. 2 is a comparison of a cross-sectional image of raw data and a cross-sectional image of preprocessed data according to a first embodiment of the present invention.
Detailed Description
The terminology used herein is for the purpose of describing particular embodiments only and is not intended to be limiting of the invention. Unless otherwise defined, all terms used herein have the same meaning as commonly understood by one of ordinary skill in the art to which this invention belongs. It will be further understood that the conventional terms should be interpreted as having a meaning that is consistent with their meaning in the relevant art and this disclosure. The present disclosure is to be considered as an example of the invention and is not intended to limit the invention to the particular embodiments.
Example one
A method for denoising an en face image of OCTA (optical clear associated with a transform-domain Fourier transform) by using a two-dimensional transform-domain Fourier filter is based on Fourier Transform (FT) denoising, and specifically comprises the following steps:
step S0, image preprocessing step. And preprocessing the en face image of the OCTA so as to facilitate subsequent unified processing by adopting a standard method. The method comprises the following steps:
step S0-1, converting the en face image of the OCTA into a gray level image;
In step S1, a frequency domain image is extracted from the image obtained in step S0. In this embodiment, for gray scale imagesPerforming two-dimensional Fourier transform to realize gray imageAnd converting from a space domain to a frequency domain to obtain a frequency domain image.
And step S2, removing the stripe information in the frequency domain image obtained in the step S1, and further obtaining a de-noised frequency domain image. The method can be realized by adopting a frequency domain filtering method in the prior art, such as Fourier filtering, wiener filtering, adaptive filtering and the like. The method is preferably realized by adopting a Fourier filter, the frequency domain denoising treatment of the Fourier filter can keep the sharpness of the edge of the image, the two-dimensional transform domain Fourier filter can effectively eliminate the micro-eye noise of the en face image, a better visualization effect is provided for the en face image object, no extra artifact is introduced into the recovered image, and the method is beneficial to the quantification of the blood vessel correlation analysis and diagnosis. The method specifically comprises the following steps:
and step S2-1, shifting the zero frequency point of the frequency domain image to the middle of the frequency spectrum so as to further tighten the stripe information into a narrow band in the vertical direction in the frequency domain image.
Step S2-2, the frequency domain image obtained in the step S2-1 and a Gaussian damping functionThe multiplication eliminates the stripe information compressed in this way.
And S2-3, restoring the zero frequency point of the frequency domain image obtained in the step S2-2 to obtain a de-noised frequency domain image.
And S3, reconstructing a denoised image based on the denoised frequency domain image obtained in the S2. In this step, a corresponding method is selected for image reconstruction according to the method for extracting the frequency domain image used in step S1. In this embodiment, in step S1, a frequency domain image is obtained by fourier transform, and correspondingly, in step S3, a denoised image is obtained by performing inverse fourier transform。
Example two
A method for denoising an en face image of OCTA (optical clear associated with transform-domain transform) by using a two-dimensional transform domain Fourier filter is based on Wavelet Transform (WT) for denoising, and specifically comprises the following steps:
step S0, image preprocessing step. And preprocessing the en face image of the OCTA so as to facilitate subsequent unified processing by adopting a standard method. The method comprises the following steps:
step S0-1, converting the en face image of the OCTA into a gray level image;
In step S1, a frequency domain image is extracted from the image obtained in step S0. In the present embodiment, first, in step S1-0, the gradation image obtained in step S1 is subjected toDecomposing to obtain a horizontal sub-band image containing stripe information; and then, the horizontal subband image obtained in the step S1-0 is subjected to two-dimensional Fourier transform in a step S1-1 to obtain a frequency domain image. The embodiment adopts wavelet transform to perform decomposition, and specifically comprises the following steps:
step S1-0, for gray scale imageWavelet decomposition(wherein,l is the maximum number of wavelet decompositions), thereby obtaining a gray-scale imageThe structural information contained in (A) is divided into horizontal sub-band images at different resolution scalesVertical subband imagesAnd diagonal detail sub-band images。
Step S1-1, for horizontal subband image containing stripe informationAnd performing two-dimensional Fourier transform to obtain a frequency domain image.
And step S2, removing the stripe information in the frequency domain image obtained in the step S1, and further obtaining a de-noised frequency domain image. The method can be realized by adopting a frequency domain filtering method in the prior art, such as Fourier filtering, wiener filtering, adaptive filtering and the like. The method is preferably realized by adopting a Fourier filter, the frequency domain denoising treatment of the Fourier filter can keep the sharpness of the edge of the image, the two-dimensional transform domain Fourier filter can effectively eliminate the micro-eye noise of the en face image, a better visualization effect is provided for the en face image object, no extra artifact is introduced into the recovered image, and the method is beneficial to the quantification of the blood vessel correlation analysis and diagnosis. The method specifically comprises the following steps:
and step S2-1, shifting the zero frequency point of the frequency domain image to the middle of the frequency spectrum so as to further tighten the stripe information into a narrow band in the vertical direction in the frequency domain image.
Step S2-2, the frequency domain image obtained in the step S2-1 and a Gaussian damping functionThe multiplication eliminates the stripe information compressed in this way.
And S2-3, restoring the zero frequency point of the frequency domain image obtained in the step S2-2 to obtain a de-noised frequency domain image.
And S3, reconstructing a denoised image based on the denoised frequency domain image obtained in the S2. In this step, a corresponding method is selected for image reconstruction according to the method for extracting the frequency domain image used in step S1. In this embodiment, in step S1, a frequency domain image is obtained by wavelet decomposition, and correspondingly, in step S3, a denoised image is obtained by performing inverse wavelet transform. The method specifically comprises the following steps:
s3-1, performing two-dimensional inverse Fourier transform on the de-noised frequency domain image obtained in the S2 to obtain a de-noised sub-band image;
Wavelet Transform (WT) and Fourier filter are combined to construct a fast, powerful and stable filter for eliminating horizontal stripes of image, and the micromotion artifact and original features are strictly separated, so that not only can unnecessary structures be restrained, but also original image information can be highly stored.
EXAMPLE III
A method for denoising an en face image of OCTA (optical coherence tomography) by using a two-dimensional transform domain Fourier filter is based on non-subsampled contourlet transform (NSCT) for denoising, and specifically comprises the following steps:
step S0, image preprocessing step. And preprocessing the en face image of the OCTA so as to facilitate subsequent unified processing by adopting a standard method. The method comprises the following steps:
step S0-1, converting the en face image of the OCTA into a gray level image;
In step S1, a frequency domain image is extracted from the image obtained in step S0. In the present embodiment, first, in step S1-0, the gradation image obtained in step S1 is subjected toDecomposing to obtain a horizontal sub-band image containing stripe information; and then, the horizontal subband image obtained in the step S1-0 is subjected to two-dimensional Fourier transform in a step S1-1 to obtain a frequency domain image. This embodiment employs non-downsampling contourlet transformThe decomposition is carried out, and the optimal performance in noise elimination and blood vessel preservation is achieved; the method specifically comprises the following steps:
step S1-0-1, for gray scale imagePerforming non-subsampled pyramid (NSP) decomposition to generate a high-pass sub-band image and a low-pass sub-band image, and satisfying the image reconstruction condition:. Wherein,in the form of a low-pass filter,for the high pass filter, set to:,andin order to synthesize the filter, the filter is,。
and step S1-0-2, continuing to perform non-downsampling pyramid decomposition on the low-pass sub-band images for m times to obtain m high-frequency sub-band images.
Step S1-0-3, performing non-down sampling directional filter bank decomposition on the m high frequency sub-band images to obtain horizontal sub-band imagesAnd vertical subband imagesWherein。
Step S1-1, for horizontal subband image containing stripe informationAnd performing two-dimensional Fourier transform to obtain a frequency domain image.
And step S2, removing the stripe information in the frequency domain image obtained in the step S1, and further obtaining a de-noised frequency domain image. The method can be realized by adopting a frequency domain filtering method in the prior art, such as Fourier filtering, wiener filtering, adaptive filtering and the like. The method is preferably realized by adopting a Fourier filter, the frequency domain denoising treatment of the Fourier filter can keep the sharpness of the edge of the image, the two-dimensional transform domain Fourier filter can effectively eliminate the micro-eye noise of the en face image, a better visualization effect is provided for the en face image object, no extra artifact is introduced into the recovered image, and the method is beneficial to the quantification of the blood vessel correlation analysis and diagnosis. The method specifically comprises the following steps:
and step S2-1, shifting the zero frequency point of the frequency domain image to the middle of the frequency spectrum so as to further tighten the stripe information into a narrow band in the vertical direction in the frequency domain image.
Step S2-2, the frequency domain image obtained in the step S2-1 and a Gaussian damping functionThe multiplication eliminates the stripe information compressed in this way.
And S2-3, restoring the zero frequency point of the frequency domain image obtained in the step S2-2 to obtain a de-noised frequency domain image.
And S3, reconstructing a denoised image based on the denoised frequency domain image obtained in the S2. In this step, a corresponding method is selected for image reconstruction according to the method for extracting the frequency domain image used in step S1. In this embodiment, in step S1, a frequency domain image is obtained by wavelet decomposition, and correspondingly, in step S3, a denoised image is obtained by performing inverse wavelet transform. Specifically comprises:
S3-1, performing two-dimensional inverse Fourier transform on the de-noised frequency domain image obtained in the S2 to obtain a de-noised sub-band image;
Step S3-2, based on the denoised sub-band image obtained in step S3-1Performing non-down sampling contourlet reconstruction to obtain a denoised image。
As shown in FIG. 2, 8 typical micro-motion noise regions are selected to show the de-noising results of the above three embodiments of the present invention, and the performance thereof is evaluated and compared. The four regions of interest on the left are used to demonstrate noise removal capability and the other four regions on the right are used to show vessel retention capability. From region one to region four, the NSCT filter used in example three was found to have the best noise removal effect when viewed simply with the naked eye, but was not able to be an accurate conclusion. From region five to region eight, vessel retention is difficult to discern with the naked eye. The comparison was performed by the quantitative indicators shown below. These methods of assessment can be divided into two aspects.
First in terms of the elimination of the jogging noise:
the denoising task typically adds analog noise to the noise-free image, and then compares the denoised image with ground truth for evaluation. However, the source of en face micropower noise is rather complex (decorrelation of time-separated backscattered photons) and there is no suitable modeling method. Thus, the present invention proposes two indicators that do not require a ground truth. First, the entropy of the image, which can be used to represent the amount of information contained in the image, is smaller, the better the noise cancellation effect. Second, the vascular density (vd) should be broadly applied to the quantitative analysis of OCTA images. The eyeball micro-motion noise on the en face image is a bright short line, and the eyeball micro-motion noise is counted as a blood vessel during calculation, so that the blood vessel density is increased.
Second in terms of vessel preservation intact:
the most important thing in this respect is that the noise filter used does not destroy the original shape of the vessel. Therefore, the region of the image with less eye movement noise is used as the reference region. The denoised images are then compared to them. Peak signal-to-noise ratio (PSNR) and Structural Similarity Index (SSIM) were used for evaluation.
TABLE 1
As shown in table 1, table 1 shows a comparison of the above evaluation index to different examples (i.e., different filters). All eight selected regions are used to calculate the index, with the best results in each class shown in bold. In the aspect of removing the eyeball twitter noise, the third embodiment has better performance in both the image entropy and the blood Vessel Density (VD). Example three also has optimal vessel retention on the Structural Similarity Index (SSIM). The fourier filtering of the first embodiment has the highest peak signal-to-noise ratio (PSNR) in vessel retention, but is insufficient in other indexes.
Summary of the experiments:
the method provided by the invention well removes the bright short-line noise generated by eyeball micromotion in an en face image of OCTA by combining Fourier filtering on the basis of fully utilizing the multi-directional advantages of WT and NSCT. In the method, Fourier filtering after non-subsampled contour transform (NSCT) has the best effect on removing the micro-motion noise of the en face image. For vessel retention, wavelet domain filtering has the advantage of preserving signal-to-noise ratio, while NSCT filtering largely preserves structural similarity. The advantages of the invention are illustrated by the objective evaluation of the experimental results.
Although the embodiments of the present invention have been described with reference to the accompanying drawings, those skilled in the art may make various changes or modifications within the scope of the appended claims.
Claims (8)
1. A method for image noise removal for OCT and OCTA, comprising:
step S0, preprocessing the image to obtain a gray scale image;
step S1, extracting a frequency domain image from the grayscale image;
step S2, removing stripe information in the frequency domain image to obtain a de-noised frequency domain image;
step S3, reconstructing a denoised image based on the denoised frequency domain image;
the step S1 includes:
step S1-0, decomposing the gray level image by adopting non-downsampling contourlet transform or wavelet change to extract a horizontal sub-band image containing stripe information;
and step S1-1, performing two-dimensional Fourier transform on the horizontal sub-band image to obtain a frequency domain image.
2. The method of OCT and OCTA related image noise removal of claim 1, wherein:
3. The method for OCT and OCTA image noise removal according to claim 1, wherein said step S1-0 comprises:
step S1-0-1, performing nonsubsampled contourlet decomposition to obtain a high-pass sub-band image and a low-pass sub-band image; step S1-0-2, performing non-downsampling contourlet decomposition on the low-pass sub-band image for m times to obtain m high-frequency sub-band images;
step S1-0-3, performing non-down sampling directional filter bank decomposition on the m high frequency sub-band images to obtain horizontal sub-band imagesAnd vertical subband imagesWherein;
4. The method for image noise removal for OCT and OCTA according to any one of claims 1-3, wherein said step S2 comprises:
step S2-1, the zero frequency point of the frequency domain image is moved to the middle of the frequency spectrum;
step S2-2, multiplying by a Gaussian damping function;
and S2-3, restoring the zero frequency point.
5. The method of OCT and OCTA image noise removal as claimed in claim 4, wherein:
in step S3, two-dimensional inverse fourier transform is performed to obtain the denoised image.
7. The method for OCT and OCTA image noise removal according to claim 5, wherein said step S3 comprises:
step S3-1, performing two-dimensional inverse Fourier transform to obtain a denoised sub-band image;
8. The method for OCT and OCTA image noise removal according to claim 1, wherein said step S0 comprises:
step S0-1, converting the image into a gray image;
and step S0-2, normalization processing.
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Citations (4)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN103247035A (en) * | 2013-05-20 | 2013-08-14 | 重庆邮电大学 | Medical image processing device, method and system based on digital X-ray machine |
CN104282007A (en) * | 2014-10-22 | 2015-01-14 | 长春理工大学 | Contourlet transformation-adaptive medical image fusion method based on non-sampling |
CN105184752A (en) * | 2015-09-23 | 2015-12-23 | 成都融创智谷科技有限公司 | Image processing method based on wavelet transform |
CN107388963A (en) * | 2017-07-13 | 2017-11-24 | 北京理工大学 | The digital Moiré patterns phase extraction method that wavelet analysis and LPF are combined |
Family Cites Families (4)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
AU2014202322A1 (en) * | 2014-04-29 | 2015-11-12 | Canon Kabushiki Kaisha | Wavelet denoising of fringe image |
CN103940371A (en) * | 2014-05-12 | 2014-07-23 | 电子科技大学 | High-precision three-dimensional shape measurement method for jump object |
CN104580937B (en) * | 2015-01-21 | 2017-06-27 | 中国科学院上海技术物理研究所 | A kind of infrared imaging system fringes noise minimizing technology |
CN107228632B (en) * | 2017-05-18 | 2019-12-10 | 广东工业大学 | displacement field chromatographic measurement device and method based on windowed Fourier transform |
-
2019
- 2019-04-29 CN CN201910352015.7A patent/CN110101362B/en active Active
Patent Citations (4)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN103247035A (en) * | 2013-05-20 | 2013-08-14 | 重庆邮电大学 | Medical image processing device, method and system based on digital X-ray machine |
CN104282007A (en) * | 2014-10-22 | 2015-01-14 | 长春理工大学 | Contourlet transformation-adaptive medical image fusion method based on non-sampling |
CN105184752A (en) * | 2015-09-23 | 2015-12-23 | 成都融创智谷科技有限公司 | Image processing method based on wavelet transform |
CN107388963A (en) * | 2017-07-13 | 2017-11-24 | 北京理工大学 | The digital Moiré patterns phase extraction method that wavelet analysis and LPF are combined |
Non-Patent Citations (1)
Title |
---|
条纹模式的自适应稀疏滤波方法研究;张峰;《中国优秀硕士学位论文库》;20141015;说明书第2.2.2节 * |
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