CN109897837A - A kind of l-amino acid deaminase mutant and its application - Google Patents

A kind of l-amino acid deaminase mutant and its application Download PDF

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CN109897837A
CN109897837A CN201910216813.7A CN201910216813A CN109897837A CN 109897837 A CN109897837 A CN 109897837A CN 201910216813 A CN201910216813 A CN 201910216813A CN 109897837 A CN109897837 A CN 109897837A
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amino acid
gly
mutant
ala
val
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刘龙
王越
吕雪芹
李江华
堵国成
陈坚
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Jiangnan University
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Jiangnan University
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Abstract

The invention discloses a kind of l-amino acid deaminase mutant and its applications, belong to genetic engineering field.On the basis of present invention l-amino acid deaminase amino acid sequence shown in SEQ ID NO.1, after being mutated to one or more in G206, P272, V276, V283, E340, a variety of l-amino acid deaminase mutants have been obtained;The yield that wherein mutant G206R/P272F/V276C/V283I/E340S (its amino acid sequence is as shown in SEQ ID NO.3) is catalyzed sodium glutamate production α-KG is up to 100.96gL‑1.L-amino acid deaminase mutant provided by the invention will promote the industrialized production of α-KG to a certain extent.

Description

A kind of l-amino acid deaminase mutant and its application
Technical field
The present invention relates to a kind of l-amino acid deaminase mutant and its applications, belong to genetic engineering field.
Background technique
α-ketoglutaric acid (α-ketoglutarate, abbreviation α-KG) is widely used in food, medicine, chemical industry and cosmetics In equal industrial circles.In field of medicaments, α-KG can mitigate the kidney burden of nephrotic, can also control the intracorporal blood lipid of people It is horizontal;In field of food, α-KG energy active balance body nitrogen metabolism, while also increasing food nutrition as additive;Changing Cosmetic field, α-KG, which can remove free radical in conjunction with intracellular excessive nitrogen, improves skin quality etc.;In industrial circle, α-KG can be used for animal feed additive, promote animal skeleton growth, anti-stress ability etc..
L-amino acid deaminase (PM1) from proteus mirabilis (Proteus mirabilis) can be by glutamic acid Sodium is converted into α-ketoglutaric acid (α-KG).Gazi Sakir Hossain et al. (Bioconversion of l-glutamic acid to α-ketoglutaric acid by an immobilized whole-cell biocatalyst Expressing l-amino acid deaminase from Proteus mirabilis) proteus mirabilis will be come from The l-amino acid deaminase of (Proteus mirabilis) heterogenous expression in bacillus subtilis and Escherichia coli, last benefit Pidolidone is biologically converted into α-ketoglutaric acid with immobilized whole-cell biocatalyst, using Pidolidone as substrate, from withered α-KG generation the level separated in careless bacillus and Escherichia coli be 55.3 ± 1.73 and 21.7 ± 0.39g/mg protein/point Clock, the maximum conversion rate that Pidolidone is converted into α-KG is 31% (w/w).
In order to improve substrate specificity and reduce product consumption, Gazi Sakir Hossain et al. (Improved production of α-ketoglutaric acid(α-KG)by a Bacillus subtilis whole-cell biocatalyst via engineering of l-amino acid deaminase and deletion of theα-KG Utilization pathway) 3 wheel fallibilities are further carried out by the l-amino acid deaminase to proteus mirabilis source The gene knockout of α-KG Consumption in PCR and bacillus subtilis, it is determined that 6 critical sites F110, A255, E349, R228, T249, I352 have simultaneously carried out fixed point saturation mutation, wherein mutant F110I/A255T/E349D/R228C/T249S/ I352A makes the biological transformation ratio of Pidolidone production α-KG by 31.5% to 83.25%, α-KG output increased to 10.08g/ L.SucA gene is knocked out, yield is further increased to 12.21g/L.
Although utilizing the L- amino for deriving from proteus mirabilis (Proteus mirabilis) by the research of forefathers The sour full cell production α-KG of deaminase has obtained remarkable progress, but to further increase α-KG yield, l-amino acid deaminase There are still very big progress spaces for molecular modification.
Summary of the invention
In order to solve the above-mentioned technical problem, the present invention is residual by the partial amino-acid of molecular modification l-amino acid deaminase Base, so that product α-ketoglutaric acid yield significantly improves.
The first purpose of the invention is to provide a kind of l-amino acid deaminase mutant, the mutant includes: in SEQ On the basis of amino acid sequence shown in ID NO.1, to one or more position in G206, P272, V276, V283, E340 The amino acid sequence that point obtains after being mutated.
In one embodiment of the invention, the mutant is V276C/V283I/E340G, P272F/V283I/ E340S or P272F/V283I/E340G.
In one embodiment of the invention, the mutant is V276C/E340S, P272F/V276C/V283I/ E340S or G206R/P272F/V283I/E340G.
In one embodiment of the invention, the mutant is G206R/P272F/V276C/V283I/E340S, Amino acid sequence is as shown in SEQ ID NO.3.
A second object of the present invention is to provide the genes for encoding the mutant.
Third object of the present invention is to provide the carriers or cell that carry the gene.
Fourth object of the present invention is to provide the genetic engineering bacterium for expressing the l-amino acid deaminase mutant.
In one embodiment of the invention, the genetic engineering bacterium is with Escherichia coli for host.
In one embodiment of the invention, the genetic engineering bacterium is using pET20b as carrier.
Fifth object of the present invention is to provide a kind of method for preparing α-ketoglutaric acid, the l-amino acid deaminase is prominent Variant or full cell containing the l-amino acid deaminase mutant are catalyst, are substrate preparation α -one penta using sodium glutamate Diacid.
In one embodiment of the invention, the whole-cell catalyst concentration is 20 ± 5g/L.
In one embodiment of the invention, the substrate glutamic acid na concn is 200 ± 10g/L.
In one embodiment of the invention, the condition of the conversion are as follows: 30 ± 5 DEG C of temperature, transformation time 60 ± 10h。
Beneficial effects of the present invention:
(1) having determined influences in the l-amino acid deaminase of proteus mirabilis (Proteus mirabilis) Catalytic activity and Binding Capacity and coenzyme effect 5 key amino acids G206, P272, V276, V283, E340, and to its into Row unit point and multidigit point combinatorial mutagenesis, have obtained the more plants of l-amino acid deaminase mutants that can make α-KG output increased;
(2) wherein mutant V276C/E340S, P272F/V276C/V283I/E340S, G206R/P272F/V283I/ E340G, α-KG output increased 42.2%, 53.6%, 49.2%, α-KG yield is made to be respectively 86.38gL respectively-1、 93.29g·L-1、90.57g·L-1
(3) α-KG yield highest of mutant G206R/P272F/V276C/V283I/E340S, amino acid sequence is such as Shown in SEQ ID NO.3, α-KG yield is up to 100.96gL-1, with amino acid sequence L- amino as shown in SEQ ID NO.1 For sour deaminase compared to improving 66.3%, the molar yield of sodium glutamate conversion production α-KG is 64.7%.
Detailed description of the invention
Fig. 1 is l-amino acid deaminase single-point mutants yield testing result.
Fig. 2 is l-amino acid deaminase complex mutation body yield testing result.
Specific embodiment
In the different l-amino acid deaminase mutants in description the application, it is all made of following nomenclature:
(1) when including " alphanumeric ", for example, referring to when G206 to the amino acid sequence as shown in SEQ ID NO.1 In the 206th glycine (G) be mutated;
(2) when for " alphanumeric letter ", for example, referring to when G206R by the amino acid as shown in SEQ ID NO.1 The 206th glycine (G) in sequence is mutated into arginine (R);
(3) letter is the designatory letter of orresponding amino acid.
Seed culture medium (LB culture medium): peptone 10g, yeast powder 5g, sodium chloride 10g, distilled water constant volume.
Fermentation medium (TB culture medium): peptone 12g, yeast powder 24g, glycerol 5g, dipotassium hydrogen phosphate trihydrate 16.37g, acid dihydride potassium 2.31g.
Sample preparation: it is centrifuged after extracting reaction solution 50 μ l dilution certain multiple, the membrane filtration in 0.22 μm of aperture of supernatant, filter Liquid is sample to be tested.
The content detection of α-ketoglutaric acid: 1260 type high performance liquid chromatograph of Agilent, Bole Aminex HPX-87H Chromatographic column (300x 7.8mm, 9 μm), column temperature are 40 DEG C, and sample volume is 10 μ 1, and mobile phase is 5mmo1/L dilute sulfuric acid, mobile phase warp The membrane filtration in 0.22 μm of aperture, ultrasonic 30min degassing, flow velocity 0.6ml/min, ultraviolet detection wavelength are 210nm, when sample introduction Between be 15min.
The determination in embodiment 1:L- amino acid deaminase saturation mutation site
With document (Hossain GS, Li J, Shin HD, et al.Bioconversion of l-glutamic acid toα-ketoglutaric acid by an immobilized whole-cell biocatalyst expressing L- amino acid deaminase from Proteus mirabilis.Journal of Biotechnology,2014,169 (Complete): 112-120. in), Hossain GS et al. is to from proteus mirabilis (Proteus mirabilis) L-amino acid deaminase (PM1) be transformed after obtain amino acid sequence l-amino acid deamination as shown in SEQ ID NO.1 Based on enzyme mutant, the present embodiment on this basis, to amino acid sequence l-amino acid deamination as shown in SEQ ID NO.1 Enzyme mutant is further transformed.5 crucial amino for influencing catalytic activity and Binding Capacity and coenzyme effect have been determined Sour G206, P272, V276, V283, E340.
Foundation, mutant screening and the determination of yield in embodiment 2:L- amino acid deaminase single-point mutants library
(1) by amino acid sequence as shown in SEQ ID NO.1 (nucleotide sequence is as shown in SEQ ID NO.2) L- amino Sour deaminase gene is connected on carrier pET20b, obtains recombinant vector pET20b-PM1, building process is referring to document (Hossain GS,Li J,Shin HD,et al.Bioconversion of l-glutamic acid toα- ketoglutaric acid by an immobilized whole-cell biocatalyst expressing L-amino acid deaminase from Proteus mirabilis.Journal of Biotechnology,2014,169 (Complete): 112-120. the trifle of page 114 the 2.2nd).
(2) acquisition of single-point saturation mutation l-amino acid deaminase
Using the recombinant vector pET20b-PM1 in step (1) as template, upstream and downstream primer containing mutation sites (is shown in Table 1) after, carrying out full plasmid PCR respectively, phosphorylation and company are carried out using Blunting Kination Ligation (BKL) Kit method It connects, obtains the single-point saturation mutation l-amino acid deaminase of G206, P272, V276, V283, E340.The condition of full plasmid PCR Are as follows: 98 DEG C of 3min;Then 98 DEG C of 10s, 55 DEG C of 15s, 72 DEG C of 2min30s amount to 25 circulations;Last 72 DEG C of 10min.
Connection product is transferred to e. coli bl21 (DE3) respectively, and the Escherichia coli after conversion are coated on containing 100 On the LB plate of the ammonia benzyl antibiotic of μ g/mL, 37 DEG C of culture 12h obtain the l-amino acid deaminase containing single-point saturation mutation Recombination bacillus coli.
1 rite-directed mutagenesis primer of table
(3) screening of mutant
High flux screening: in the mutation library that step (2) is obtained each 100 monoclonals of random picking into 96 orifice plates, with Contain the recombination bacillus coli of amino acid sequence l-amino acid deaminase as shown in SEQ ID NO.1 as control, 37 DEG C of trainings Support 10h.It is gone in 48 orifice plates by 50% inoculum concentration, while adding the IPTG of final concentration of 0.06mmol/L-, carried out in 37 DEG C Fiber differentiation is centrifuged (4200 × g, 5min, 4 DEG C) after 4h, abandons supernatant.Substrate glutamic acid sodium is dissolved in the PB of 0.2M, and (pH is 6.0) in buffer, make the final concentration of 50g/L of sodium glutamate.600 μ l substrate glutamic acid sodium are added to containing recombination large intestine bar Catalysis reaction is carried out in 48 orifice plates of bacterium, 37 DEG C, centrifugation stops reaction after 1h, measures product α-KG in supernatant by development process Content.
Develop the color measurement method are as follows: takes 50 μ l supernatants and 100 μ l 0.1%2, the mixing of 4- dinitrophenylhydrazine, room temperature puts 5min 1ml 1.5M sodium hydroxide solution is added afterwards, 200 μ l liquid are drawn after colour stable in 96 shallow bore hole plates, microplate reader detects it Absorption value at 520nm.
Shaking flask secondary screening: the forward mutation assay body obtained after high flux screening is inoculated in LB culture medium, 37 DEG C, 220rpm mistake Night culture.Later by 2% switching in TB culture medium, 37 DEG C, 220rpm is cultivated to OD600Final concentration is added when=2.0 The IPTG of 0.06mmol/L is induced.20 DEG C of inducing temperature, induction time 12h.It is centrifuged under 4 DEG C, 5095 × g after induction 10min collects thallus, and thallus is washed twice with 0.2M PB buffer again, suspends spare.
Resting cell system: whole-cell catalyst concentration 20g/L, substrate glutamic acid na concn 200g/L.Full cell turns Change condition: 30 DEG C of temperature, revolving speed 220rpm, transformation time 60h.Product α-KG yield is measured, yield is higher than to the bacterial strain of control Carry out the sequencing of l-amino acid deaminase.
Determination of yield: after sequencing carry out result sequence alignment, by amino acid as the result is shown mutate bacterial strain again into Row fermented and cultured and resting cell, method and condition are finally produced using high performance liquid chromatography measurement α-KG with " shaking flask secondary screening " Amount.Wherein mutant G206R, P272F, V276C, V283I, E340S, E340G yield improve 12.5% compared with control respectively, 18.2%, 14.8%, 4.5%, 27.6%, 17.0% (being shown in Table 2).
2 α-KG yield of table
Embodiment 3:L- amino acid deaminase multiple spot complex mutation and determination of yield
By the mutational site G206R, P272F of simple point mutation output increased determined in embodiment 2, V276C, V283I, E340S, E340G are combined mutation, according to the method in embodiment 2, measure P272F/V276C in complex mutation body, V276C/V283I、V276C/E340S、V276C/E340G、P272F/V283I、P272F/E340S、P272F/E340G、 V283I/E340S、P272F/V276C/V283I、P272F/V276C/E340G、V276C/V283I/E340G、P272F/ V283I/E340S、272L/V283I/E340G、P272F/V276C/V283I/E340S、G206R/P272F/V283I/E340G、 G206R/P272F/V276C/V283I/E340S yield is above control.Compared with the control group yield be respectively increased 27.3%, 28.5%, 42.2%, 25.8%, 5.4%, 23.7%, 22.1%, 16.5%, 16.1%, 28.6%, 34.7%, 35.1%, 30.3%, 53.6%, 49.2%, 66.3% (being shown in Table 3).Wherein, mutant G206R/P272F/V276C/V283I/E340S α-KG yield highest, for amino acid sequence as shown in SEQ ID NO.3, α-KG yield is up to 100.96gL-1, sodium glutamate The molar yield of conversion production α-KG is 64.7%, this mutant strain is named as E.coli BL21-pET-20b (+)- pm1152。
The molar yield calculation formula of sodium glutamate conversion production α-KG:
Molar yield=(product α-KG concentration/α-KG relative molecular mass) ÷ (substrate glutamic acid sodium total concentration/paddy ammonia Sour sodium relative molecular mass)
3 α-KG yield of table
Although the present invention has been described by way of example and in terms of the preferred embodiments, it is not intended to limit the invention, any to be familiar with this skill The people of art can do various change and modification, therefore protection model of the invention without departing from the spirit and scope of the present invention Enclosing subject to the definition of the claims.
SEQUENCE LISTING
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<120>a kind of l-amino acid deaminase mutant and its application
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Claims (10)

1. a kind of l-amino acid deaminase mutant, which is characterized in that the amino acid sequence of the mutant includes: in SEQ ID On the basis of amino acid sequence shown in NO.1, to one or more site in G206, P272, V276, V283, E340 into The amino acid sequence obtained after row mutation.
2. mutant according to claim 1, which is characterized in that the mutant be V276C/V283I/E340G, P272F/V283I/E340S or P272F/V283I/E340G.
3. mutant according to claim 1, which is characterized in that the mutant is V276C/E340S, P272F/ V276C/V283I/E340S or G206R/P272F/V283I/E340G.
4. mutant according to claim 1, which is characterized in that the mutant is G206R/P272F/V276C/ V283I/E340S, amino acid sequence is as shown in SEQ ID NO.3.
5. encoding the gene of mutant described in claim 1.
6. carrying the carrier or cell of gene described in claim 5.
7. expressing the genetic engineering bacterium of l-amino acid deaminase mutant described in claim 1.
8. genetic engineering bacterium according to claim 7, which is characterized in that with Escherichia coli be host.
9. genetic engineering bacterium according to claim 7, which is characterized in that using pET20b as expression vector.
10. a kind of method for preparing α-ketoglutaric acid, which is characterized in that with l-amino acid deamination enzyme mutant described in claim 1 Body or full cell containing the l-amino acid deaminase mutant are catalyst, are substrate preparation α -one penta 2 using sodium glutamate Acid.
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CN110643585A (en) * 2019-11-08 2020-01-03 江南大学 Method for producing alpha-ketone-beta-methyl n-pentanoic acid by using amino acid deaminase
CN111269900A (en) * 2020-03-17 2020-06-12 江南大学 Preparation and application of L-amino acid deaminase mutant

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