CN109706105A - One plant of deformation pseudomonad fliA gene silencing bacterial strain - Google Patents
One plant of deformation pseudomonad fliA gene silencing bacterial strain Download PDFInfo
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- CN109706105A CN109706105A CN201910013458.3A CN201910013458A CN109706105A CN 109706105 A CN109706105 A CN 109706105A CN 201910013458 A CN201910013458 A CN 201910013458A CN 109706105 A CN109706105 A CN 109706105A
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Abstract
The present invention provides one plant of deformation pseudomonadfliABacterial strain described in gene silencing bacterial strain isPseudomonas plecoglossicida fliA‑RNAi, on November 12nd, 2018 in China typical culture collection center preservation, deposit number is CCTCC NO:M 2018770.Constructed deformation pseudomonadfliAThe virulence of gene silencing bacterial strain is substantially less than the virulence for deforming pseudomonad wild strain, and the death initial time caused by same infectious condition is delayed, and the death rate substantially reduces, and has established theoretical basis to develop deformation pseudomonad attenuated vaccine.
Description
Technical field
The invention belongs to microorganisms technical fields, are more particularly to one plant of deformation pseudomonadfliAGene silencing bacterial strain.
Background technique
Deformation pseudomonad (Pseudomonas plecoglossicida) it is that the seawater such as Larimichthys crocea, Epinephelus coioides are supported
The pathogen of breeding fish " internal organ ichthyophthirius ", it is annual caused by direct economic loss surpass hundred million yuan.
fliAGene is the key gene in flagellar production, the FliA(σ of coding28) albumen in flagellar production to Guan Chong
It wants.σ28It is the positive regulator protein in flagellar production, is transcription, third class flagellum promoter which determine third class flagellum promoter
The transcription of flagellum late gene is controlled, flagellum late gene encodes the motor protein of flagellum, trend albumen and flagellum silk-fibroin.
When bacterium lacksfliAAfter gene, locomitivity and pathogenic is all weakened film Forming ability.
Previous in research, compared with the pure culture of wild type deformation pseudomonad (being cultivated at 18 DEG C), infecting
24,48,72 and 96 hours afterwards,fliAGene expression amount all raises.Pass through Larimichthys crocea infection experiment, discovery deformation pseudomonadfliADeath initial time caused by gene silencing mutant strain is delayed, and the death rate substantially reduces.Deform pseudomonadfliASilencing
Mutant strain is to develop deformation pseudomonad attenuated vaccine to have established theoretical basis, and the internal organ caused for research deformation pseudomonad are white
The sick preventing and controlling of point provide potential target spot.
Summary of the invention
The purpose of the present invention is to provide one plant of deformation pseudomonadsfliAGene silencing bacterial strain.
To achieve the above object, the present invention adopts the following technical scheme:
One plant of deformation pseudomonadfliAGene silencing bacterial strain, the bacterial strain arePseudomonas plecoglossicida fliA-RNAi, on November 12nd, 2018 in China typical culture collection center preservation, deposit number is CCTCC NO:M
2018770, address is Wuhan Wuhan University.
This strain provided by the invention deforms pseudomonadfliAGene silencing bacterial strain is carried out by following technological means
Building,
(1): by comparing analysis deformation pseudomonas infection host interaction transcript profile data, screening expression quantity in course of infection
It improvesfliAGene;
(2): synthesis shRNA is connected into pCM130/tac carrier after annealing, turn technological sourcing by electricity and deform pseudomonad competence
Cell, building deformation pseudomonadfliAGene silencing mutant strain;It using QPCR technology, tests to silencing efficiency, finally
Obtain building deformation pseudomonadfliAGene silencing mutant strain.The pCM130/tac carrier is added using plasmid pCM130
Upper promoter tac is constituted.
(3) utilize artificial liver support, research deformation pseudomonad wild strain,fliAThe virulence of gene silencing mutant strain,
AndfliAInfluence of the gene silencing to deformation pseudomonad and Larimichthys crocea gene expression.
By gene sequencing and comparison, bacterial strain provided by the invention is one plant of deformation pseudomonadfliAGene silencing bacterium
Strain.
The present invention has the advantages that
Artificial liver support the result shows that, deform pseudomonadfliAThe virulence of gene silencing mutant strain, which is substantially less than, deforms false list
The virulence of born of the same parents' bacterium wild strain, the death initial time caused by same infectious condition are delayed, and the death rate substantially reduces, and are become to develop
Shape pseudomonad attenuated vaccine has established theoretical basis.
Dual RNA-seq analysis the result shows that, deform pseudomonadfliAThe stabilization silencing of gene can not only significant shadow
The transcript profile expression of deformation pseudomonad is rung, and the transcript profile expression of Larimichthys crocea can be significantly affected, this is false for research deformation
The internal organ ichthyophthirius preventing and controlling that monad causes provide potential target spot.
Detailed description of the invention
Fig. 1 Larimichthys crocea is by the survival rate after deformation pseudomonad.Black thin represents wild by deformation pseudomonad in figure
The Larimichthys crocea survival rate of strain infection;Grey filament is represented by deformation pseudomonadfliAThe Larimichthys crocea existence of silent mutation strain infection
Rate;Heavy black line represents the Larimichthys crocea survival rate injected by PBS.
Fig. 2 Larimichthys crocea spleen is by the phenotype after deformation each strain infection of pseudomonad.In first box is to be deformed
The 3rd day spleen of Larimichthys crocea of pseudomonad wild strain infection;In second box is to be deformed pseudomonadfliASilencing
The 7th day spleen of Larimichthys crocea of mutant infection;In third box is the spleen for injecting the fish of PBS.
Fig. 3 Larimichthys crocea Different Organs are for deformation pseudomonad carrying capacity measurement.Abscissa is the metainfective time in figure;It is vertical
Coordinate is to deform pseudomonad in the tissuefliARatio of the silent mutation strain number amount compared to wild strain.Different filling shapes
Pillar represents different tissues: small grid filling is spleen;Big grid filling is body kidney;Horizontal line filling is blood;It is perpendicular
Line filling is liver.
Specific embodiment
Embodiment 1
Deformation pseudomonad provided in an embodiment of the present inventionfliAGene stablize silencing bacterial strain construction method the following steps are included:
S101: by comparing transcription group analytical technology, deformation pseudomonad gene expression dose is detected, is foundfliA
Gene expression quantity in course of infection significantly improves.After consulting literatures, pseudomonas aeruginosa is foundfliAGene knockout mutant strain
Flagellum, motility decline cannot be synthesized, the proliferative capacity in mouse intestinal weakens;Legionella pneumophiliafliAGene mutation strain
Motility decline, film forming ability weaken, and infection ability and proliferative capacity to macrophage and host cell all weaken.Therefore it chooses
ChoosingfliAGene;
S102: using the online shRNA design tool of Thermo-fisher Scientific company (http: //
rnaidesigner.thermofisher.com/rnaiexpress/setOption.dodesignOption=shrna&pid=
708587103220684543) shRNA, is designed and synthesized, then anneals to form double-strand shRNA using annealing buffer.Building
Deform pseudomonadfliASilent mutation strain shRNA sequence, shRNA sequence F:5 '-TGGTCAAGCGCATTGTCAATCATTCA
AGAGATGATTGACAATGCGCTTGACCTTTTTTT-3 ', R:5 '-GTACAAAAAAAGGTCAAGCGCATTGTCAATCATC
TCTTGAATGATTGACAATGCGCTTGACCATGCA-3 ' (5 ' -3 ') buys original plasmid pCM130 from hundred Ao Maike companies
The promoter tac to add up constitutes pCM130/tac plasmid.Use restriction enzymeBsrGIWithNsiIDouble digestion
PCM130/tac plasmid makes its linearisation, is then connected linearization plasmid with double-strand shRNA using T4 ligase.Matter will be recombinated
The first thermal shock of grain is transformed into bacillus coli DH 5 alpha competent cell, and 37 DEG C of expansion cultures extract recombinant plasmid, electricity after being sequenced successfully
It hits and is transformed into deformation pseudomonad competent cell, expand culture under the conditions of 18 DEG C.This bacterial strain is to deform pseudomonadfliASilent mutation strain.The deformation pseudomonadfliASilent mutation strain isPseudomonas plecoglossicida fliA-RNAi, on November 12nd, 2018 in China typical culture collection center preservation, deposit number is CCTCC NO:M
2018770, address is Wuhan, Wuhan University.
Using qRT-PCR technology, test to silencing efficiency, upstream primer sequence (5 ' -3 ' ') are as follows:
CGAGGGTTTCTTCAGAGCGGTAC, downstream primer sequence (5 ' -3 ' ') are as follows: GCACCAGGCCAATTTCTTTAAGAT is examined
As a result consistent with transcript profile sequencing result, fliA gene expression amount raises after infection;
S103: utilize artificial liver support, to deformation pseudomonad wild strain andfliAThe virulence of silent mutation strain compares.
Deformation pseudomonad wild strain,fliASilent mutation strain and PBS(NaCl 0.8g, KCl 0.02g, Na2HPO4
0.36g、 KH2PO4 0.024g、H2O 1L) thoracic cavity infectable infection under preceding fin fin, every fish note are carried out to three groups of Larimichthys croceas respectively
0.2 mL is penetrated, strain infection concentration is 104Cfu/g, every group of 60 tails of the comparable Larimichthys crocea of length scale, then at 18 DEG C of water temperature
It is raised in seawater, records the survival condition of each group fish daily.
Larimichthys crocea infection deformation pseudomonad is inquired intofliAThe case where silent mutation strain is survived.The Larimichthys crocea of PBS is injected,
It does not observe after injection and did not all observe death up to 14 days.The Larimichthys crocea of injection deformation pseudomonad wild strain, the 3rd day
There is dead, all death in the 5th day, survival rate 0.Injection deformation pseudomonadfliAThe Larimichthys crocea of silent mutation strain goes out on the 6th day
Existing death no longer occurs dead, 30% (Fig. 1) of survival rate rising on the 10th day.Fish of the injection containing deformation pseudomonad wild strain
A large amount of white tubercles are observed in spleen on day 3, show symptom identical with natural disease, and reach identical phenotype disease
Shape, injection deformation pseudomonadfliAThe spleen of the fish of silent mutation strain need in the 7th talent it is observed that.Inject the fish of PBS
White dirt (Fig. 2) is not observed in spleen.
Acquisition deformation pseudomonad wild strain andfliA1,2,3,4th day Larimichthys crocea after-RNAi silent mutation strain infection
Spleen, liver, blood, body kidney, are respectively organized into powdery with liquid nitrogen grinding, weigh 30mg and organize powder, with Quan Shijin marine animal
Tissue DNA extracts kit extracts DNA.With qRT-PCR method detect deformation pseudomonad wild strain andfliA- RNAi silent mutation
Carrying capacity of the strain in Larimichthys crocea.gyrBGene is the single copy identification gene of specificity for deforming pseudomonad, specific upstream
Primer sequence (5 ' -3 '): TGCTGAAGGACGAGCGTTCG;Downstream primer sequence (5 ' -3 '):
ATCATCTTGCCGACAACAGC.Prepare the standard curve of gyrB gene, and with Synergy H1 global function micropore board detector
Measure 1 each gradient of μ lgyrBPCR product concentration.With the deformation pseudomonad wild strain at each time point andfliA- RNAi silencing
Each tissue DNA of the Larimichthys crocea of mutant infection is template,gyrBThe property identified primer is primer, carries out qRT-PCR experiment.
When data processing, calculating abscissa first is that the XY curve that Ct value ordinate is copy number needs in this step
By each gradient measuredgyrBThe concentration of gene PCR product is converted into copies, and calculation formula is:.Wherein 1mol=6.02*1023Copy number;DNA
Concentration * 10-9Afterwards, unit becomes g/ μ l;520*660 is the dalton number of double-stranded DNA, wherein 520 aregyrBThe production of gene magnification
Object length, unit are bases, and 660 be double-stranded DNA constant, and unit is dalton/base, 1 dalton=1g/mol.Because of measurement
1 μ l when concentration, thus obtain the result is that copies, XY curve can be calculated according to the Ct value of copies and each concentration.So
The copy number at each time point is calculated according to the Ct value at each time point afterwards.WithfliAEach time point each group of-RNAi silent mutation strain
The copy number knitted obtains ratio divided by the copy number in wild strain.
Fig. 3 shows the dynamic change of carrying capacity in infection different time different tissues.Each time point after infection, rheum officinale
Spleen, body kidney, blood in fish and the deformation pseudomonad in liverfliA- RNAi bacterial strain carrying capacity is significantly lower than wild strain.
The foregoing is merely presently preferred embodiments of the present invention, all equivalent changes done according to scope of the present invention patent with
Modification, is all covered by the present invention.
SEQUENCE LISTING
<110>Collects The American University
<120>one plants of deformation pseudomonad fliA gene silencing bacterial strains
<130> 7
<160> 7
<170> PatentIn version 3.3
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atacaggcca gccaagtcct cgaccgtgac gacatggagc agattggctt gatggggctg 180
ctcgaggggc tgcgtcgcta tggcgtgccc gatgagcagt ttgcccggtt tgccgcgatg 240
cgcattcgtg gggccattct cgacgagctg cgtcggcagg actggcgtcc acggcggctg 300
cggcaacagg cgcacaaggt ccgcgacgca gtacgccagc tcagtcgcag attaggccgc 360
cagcctaagg atgtagaggt gctcgaggcc accggcttga accatgcgca gtaccagtcc 420
tatctgcaag ccgaggcggc ggaagccatc gaaagcctcg atacactgct cctggatccc 480
gatcgagggt ttcttcagag cggtaccagt gttgaggacc tggtacttgg cgagcgtttg 540
ttggcgcagg cgctggacca tctcgatgag cgcgagcgtt tggtgctgac gctgtactac 600
cagcatgaac tgaatcttaa agaaattggc ctggtgctga acgtcagtga cgcccgggtc 660
tgtcagttga gtaagcaggc catcgaaaag gcttgtgctt gtctaaccaa gagtaactga 720
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tggtcaagcg cattgtcaat cattcaagag atgattgaca atgcgcttga ccttttttt 59
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gtacaaaaaa aggtcaagcg cattgtcaat catctcttga atgattgaca atgcgcttga 60
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Claims (4)
1. one plant of deformation pseudomonadfliAGene silencing bacterial strain, it is characterised in that: the bacterial strain isPseudomonas plecoglossicida fliA- RNAi, on November 12nd, 2018 in China typical culture collection center preservation, preservation
Number be CCTCC NO:M 2018770.
2. one plant of deformation pseudomonad as described in claim 1fliAThe construction method of gene silencing bacterial strain, it is characterised in that:
(1): by comparing analysis deformation pseudomonas infection host interaction transcript profile data, screening expression quantity in course of infection
It improvesfliAGene;
(2): synthesis shRNA is connected into pCM130/tac carrier after annealing, turn technological sourcing by electricity and deform pseudomonad competence
Cell, building deformation pseudomonadfliAGene silencing mutant strain;It using QPCR technology, tests to silencing efficiency, finally
Obtain building deformation pseudomonadfliAGene silencing mutant strain.
3. one plant of deformation pseudomonad according to claim 1fliAThe construction method of gene silencing bacterial strain, feature exist
In: it is describedfliAGene order is as shown in SEQ ID NO.1.
4. one plant of deformation pseudomonad as described in claim 1fliAGene silencing bacterial strain prevents and treats fish in preparation
Application in internal organ ichthyophthirius preparation.
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CN112662608B (en) * | 2021-02-04 | 2022-06-10 | 集美大学 | Pseudomonas proteorexabB gene stable silencing strain and application thereof |
CN112625996B (en) * | 2021-02-04 | 2022-06-10 | 集美大学 | Pseudomonas proteorum znuA gene stable silencing strain and application thereof |
CN113151134A (en) * | 2021-05-12 | 2021-07-23 | 集美大学 | Pseudomonas proteorum fliG gene silencing strain and application thereof |
CN113151134B (en) * | 2021-05-12 | 2023-09-12 | 集美大学 | Pseudomonas proteus fliG gene silencing strain and application thereof |
CN113528407A (en) * | 2021-05-31 | 2021-10-22 | 集美大学 | Pseudomonas proteorutonB gene silencing strain and application thereof |
CN113528407B (en) * | 2021-05-31 | 2023-01-10 | 集美大学 | Pseudomonas proteorutonB gene silencing strain and application thereof |
CN114703115A (en) * | 2022-04-22 | 2022-07-05 | 集美大学 | Pseudomonas proteus fliS gene silencing strain and application |
CN114703115B (en) * | 2022-04-22 | 2023-09-29 | 集美大学 | Pseudomonas proteus fliS gene silencing strain and application thereof |
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