CN109486847A - The efficient inducible expression of bacillus subtilis based on artificial Gene expression - Google Patents

The efficient inducible expression of bacillus subtilis based on artificial Gene expression Download PDF

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Publication number
CN109486847A
CN109486847A CN201811542046.0A CN201811542046A CN109486847A CN 109486847 A CN109486847 A CN 109486847A CN 201811542046 A CN201811542046 A CN 201811542046A CN 109486847 A CN109486847 A CN 109486847A
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expression
promoter
gene expression
activity
efficient
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CN109486847B (en
Inventor
周哲敏
崔文璟
韩来闯
郝文亮
周丽
刘中美
燕宇
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Jiangnan University
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Jiangnan University
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Priority to PCT/CN2019/078809 priority patent/WO2020124830A1/en
Priority to US17/160,582 priority patent/US20210163963A1/en
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    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/63Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
    • C12N15/74Vectors or expression systems specially adapted for prokaryotic hosts other than E. coli, e.g. Lactobacillus, Micromonospora
    • C12N15/75Vectors or expression systems specially adapted for prokaryotic hosts other than E. coli, e.g. Lactobacillus, Micromonospora for Bacillus
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N1/00Microorganisms, e.g. protozoa; Compositions thereof; Processes of propagating, maintaining or preserving microorganisms or compositions thereof; Processes of preparing or isolating a composition containing a microorganism; Culture media therefor
    • C12N1/20Bacteria; Culture media therefor
    • C12N1/205Bacterial isolates
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12RINDEXING SCHEME ASSOCIATED WITH SUBCLASSES C12C - C12Q, RELATING TO MICROORGANISMS
    • C12R2001/00Microorganisms ; Processes using microorganisms
    • C12R2001/01Bacteria or Actinomycetales ; using bacteria or Actinomycetales
    • C12R2001/07Bacillus
    • C12R2001/125Bacillus subtilis ; Hay bacillus; Grass bacillus

Abstract

The invention discloses the efficient inducible expressions of bacillus subtilis based on artificial Gene expression, belong to gene engineering technology field.The present invention is efficiently manually composed in series type promoter using a kind of, by by the promoter and operon related elements (aporepressor and its binding site) Combination Design, and then make regulation of the activity of the constitutive promoter by inducer, finally construct the efficient inducible expression system of bacillus subtilis induced by inducer.The result shows that the artificial Gene expression activity in this system is higher by 15 times or so compared with the strong constitutive promoter of P43.And promoter activity can be precisely controlled by adding the inducer of various concentration.Therefore this efficient expression system structure is simple, activity is high, regulation is rigorous, has broad application prospects in heterologous protein high efficient expression and synthetic biology research.

Description

The efficient inducible expression of bacillus subtilis based on artificial Gene expression
Technical field
The present invention relates to the efficient inducible expressions of bacillus subtilis based on artificial Gene expression, belong to gene work Journey technical field.
Background technique
Bacillus subtilis is the Gram-positive type strain for being widely used in expressing foreign protein, because can be efficient Expression foreign protein is widely used in terms of industrial enzyme preparation production.Promoter is the most basic of building efficient expression system Element, the activity of promoter directly determine the efficiency of expression system.Promoter is functionally broadly divided into constitutive promoter With two class of inducible promoter.Constitutive promoter thallus growth each stage can expression alien gene, and induce Type promoter shows inactive or low activity when not being induced, and the activity of promoter substantially mentions after inducer is added High and then efficiently expressing exogenous gene.Inducible promoter is widely used since its activity is controllable, and people can pass through tune The reagent of inducer and expression time and the intensity of concentration control foreign gene is added in control.It is answered in bacillus subtilis at present Mainly there are IPTG inducible system and xylose inducible system with relatively broad, wherein IPTG inducible system is based primarily upon pHT series Vector construction forms, and uses the LacI aporepressor and binding site of non-natural hybrid promoter and Escherichia coli;And Xylose inducible system is usually using natural PxylA promoter and XylR aporepressor.
Although the inducible systems such as IPTG, xylose are widely used, since promoter activity is limited, foreign protein It is a critical issue of limitation system application always that expression quantity is low.People generally use transformation natural promoter and redesign Two kinds of strategies of Artificial promoters improve the activity and stability of promoter.But high activity promoter is often not used to construct Efficient induction type heterologous gene expression system, mainly often not due to promoter and the other elements of Gene expression regulation system Compatible, the promoter of high activity, which tends not to be thwarted albumen, effectively inhibits activity.Therefore how efficient promoter structure is based on Build the exploitation hot spot that the induction type heterologous gene expression system rigorously regulated and controled is current novel expression system.
Summary of the invention
The first purpose of the invention is to provide a kind of elements of controlling gene expression, comprising: (1) carrier;(2) artificial string Join promoter;(3) repressor protein gene;(4) positioned at promoter transcription initiation site downstream can be with the DNA in conjunction with aporepressor Segment;The artificial Gene expression includes PAWH-D30-106、PAH-D75-106Or PAH-D75-106, nucleotide sequence is respectively such as SEQ ID NO.1, SEQ ID NO.2, shown in SEQ ID NO.3.
In one embodiment of the present invention, the aporepressor includes LacI, XylR, AraC or TetR.
In one embodiment of the present invention, when the aporepressor is LacI, gene expression is made by the induction of IPTG With.
In one embodiment of the present invention, when the aporepressor is XylR, gene expression is made by the induction of xylose With.
In one embodiment of the present invention, when the aporepressor is AraC, gene expression is lured by arabinose Lead effect.
In one embodiment of the present invention, when the aporepressor is TetR, induction of the gene expression by tetracycline Effect.
In one embodiment of the present invention, the carrier includes pHT-01.
A second object of the present invention is to provide a kind of recombinant plasmids, express the element of above-mentioned adjusting gene expression
Third object of the present invention is to provide a kind of genetic engineering bacteriums, express above-mentioned recombinant plasmid.
Fourth object of the present invention is to provide a kind of method of regulation destination gene expression, by above-mentioned adjusting gene expression Element and target gene co-express.
Fifth object of the present invention is to provide the elements of above-mentioned controlling gene expression to prepare the application in destination protein.
Sixth object of the present invention is to provide the elements of above-mentioned controlling gene expression in food, chemical industry or pharmaceutical field Using.
7th purpose of the invention is to provide said gene engineering bacteria and is preparing the application in destination protein.
8th purpose of the invention is to provide said gene engineering bacteria in the application of food, chemical industry or pharmaceutical field.
The present invention is efficiently manually composed in series type promoter using a kind of, by the way that the promoter is related to operon first Part (aporepressor and its binding site) Combination Design, and then make regulation of the activity of the constitutive promoter by inducer, Finally construct the efficient inducible expression system of bacillus subtilis induced by inducer.The result shows that with the strong composing type of P43 Promoter is compared, and the artificial Gene expression activity in this system is higher by 15 times or so.And it can be by adding various concentration Inducer be precisely controlled promoter activity.Therefore this efficient expression system structure is simple, activity is high, regulation is rigorous, heterologous Have broad application prospects in albumen high efficient expression and synthetic biology research.
Detailed description of the invention
Fig. 1: PAWH-D30-106、PAH-D75-106And PAH-D75-106Compared with P43 promoter activity.
The building of Fig. 2: IPTG inducible expression and characterization, a:IPTG inducible system principle;B:IPTG inducible system characterization; C:SDS-PAGE verifies sfGFP expression.
The building of Fig. 3: xylose inducible expression and characterization, a:xylose inducible system principle;B:xylose induction system System characterization;C:SDS-PAGE verifies sfGFP expression.
Specific embodiment
1, plasmid construction method: design includes the primer of promoter sequence, using pHT01 plasmid as skeleton template, is used PrimeSTAR MAX archaeal dna polymerase (being purchased from Takara, article No.: R045Q) carries out full plasmid PCR, PCR program are as follows: initial denaturation 98 DEG C of 1min recycle to be denaturalized 98 DEG C of 30s, and anneal 50 DEG C of 30s, extend 72 DEG C of 1min, totally 30 circulations, last 72 DEG C of extensions 10min.Later with restriction enzyme DpnI digestion removal plasmid template, PCR product is purified.Same method amplification needs gram Grand segment is later assembled multiple segments with Infusion recombination method, and conversion e. coli jm109 competence is thin Born of the same parents.
2, the detection method of sfGFP fluorescence intensity: 12000 × g of sample is centrifuged 2min, collects thallus, and PBS buffer solution washes 3 It is secondary, it is diluted to certain density thallus suspension with PBS, takes 200 μ L to 96 hole elisa Plates, is put into SynergyTM H4 luciferase mark Instrument detects fluorescence.Exciting light 485nm absorbs light 528nm, detects fluorescence.
3, culture medium: LB culture medium (L-1): tryptone 10g, NaCl 10g, yeast extract 5g, pH 7.0 are prepared solid Agar powder 20g is added when body culture medium.
4,168 method for transformation of bacillus subtilis: the SPI culture medium that single colonie bacillus subtilis 168 is seeded to 2mL is chosen In, 37 DEG C of shaking table culture 12h-14h;100 μ L are taken from culture, are seeded in 5mL SPI culture medium, 37 DEG C of shaking table culture 4- Start to survey OD after 5h600.Work as OD600When about 1.0, pipette 200 μ L bacterium solutions and be forwarded in the SPII culture medium of 2mL, in 37 DEG C, 100r·min-1Shaking table is incubated for 1.5h;20 μ L l00 × EGTA (bis- (alpha-amido ethylether) tetraacethyls of ethylene glycol) are added in Xiang Guanzhong Solution, in 37 DEG C, 100rmin-1500 μ L are dispensed per l.5mL centrifuge tube after cultivating 10min in shaking table;Xiang Guanzhong, which is added, to be passed through Correctly appropriate plasmid, pressure-vaccum mixing are placed in 37 DEG C, 100rmin to sequence verification-1Shaking table in cultivate 2h;Culture terminates, It draws about 200 μ L of bacterium solution and uniformly applies corresponding selective plate, 37 DEG C of culture 12h-14h.
5, SDS-PAGE is detected: taking 200 μ L bacterium solutions, 12000 × g is centrifuged 2min, collects thallus.Contain 20 μ g/ with 200 μ L 20mM Tris-HCl (pH8.0) buffer resuspension of mL concentration lysozyme, 37 DEG C of incubation 30min are with lytic cell wall.Later 12000 × g is centrifuged 5min after 50 μ L 10 × Loading Buffer, boiling water boiling 10min are added.Take 30 μ L Supernatant samples electrophoresis Detection, through coomassie brilliant blue R250 dyeing and destainer decoloration post analysis electrophoresis result.
Embodiment 1: artificial Gene expression activity identification
PAWH-D30-106、PAH-D75-106And PAH-D75-106Promoter is artificial constructed core space tandem hybrid promoter.
PAWH-D30-106、PAH-D75-106、PAH-D75-106The sequence of promoter respectively as SEQ ID NO.1, SEQ ID NO.2, Shown in SEQ ID NO.3.
By promoter PAWH-D30-106It is cloned with primer of sfGFP (Genbank ID:AVR55189.1) expression cassette in table 1 To pHT01 carrier, the P on original vector is replacedspacPromoter sequence.The expression vector is converted to bacillus subtilis 168 In, recombinant bacterium 20h is cultivated, the expression of sfGFP is detected.Detection contains P respectively in an identical mannerAH-D75-106With contain PWAH-D75-106The expression of the sfGFP of the recombination bacteria culture fluid of recombinant plasmid.
By making comparisons with the case where common strong constitutive promoter P43 expression sfGFP, the results show that PAWH-D30-106、 PAH-D75-106、PWAH-D75-106Promoter expresses the horizontal high more than P43 promoter of sfGFP, reach 15 times of P43 or so (Fig. 1 and Table 2).Illustrate promoter PAWH-D30-106、PAH-D75-106、PWAH-D75-106It is the very high strong constitutive promoter of activity.
1 expression vector establishment primer of table
Primer Sequence (5 ' -3 ')a
PpHT-AWH-i1 CTAACGGAAAAGGGATTTTTGAGTGATCTTCTCAAAAAATAC
PpHT-AWH-i2 CCTCGTATGTTTCAAAGAGTGCACCATATGCGG
PpHT-AWH-v1 CATATGGTGCACTCTTTGAAACATACGAGGCTAATATCGG
PpHT-AWH-v2 AAGATCACTCAAAAATCCCTTTTCCGTTAGCTTTTTC
The artificial Gene expression activity of table 2
Promoter Fluorescence intensity (a.u./OD600)
P43 5370
PAWH-D30-106 75340
PAH-D75-106 77014
PWAH-D75-106 77334
The building and characterization of embodiment 2:IPTG inducible expression system
The binding site sequence of lacI is GGAATTGTGAGCGGATAACAATTCC (SEQ ID NO.4), is designed Primer P in table 3AWH-lacO-1/PAWHOn-lacO-2, LacI protein binding site is cloned into using full plasmid PCR method Promoter PAWH-D30-106The downstream of transcription initiation site, while utilizing the lacI modular expression having in itself on pHT01 carrier framework Aporepressor LacI thus constructs the expression system (Fig. 2 a) of IPTG induction type.
With sfGFP, Characterisation of proteins expression quantity level, building obtain plasmid pHT-AWH-lac-sfGFP as a purpose.It should Recombinant plasmid transformed is into bacillus subtilis 168,37 DEG C in LB culture medium, cultivates recombinant bacterium under 200rpm, detects afterwards for 24 hours The expression of sfGFP.
In no IPTG inducer, aporepressor LacI can be combined effectively in promoter transcription initiation site downstream, resistance Only transcription of the RNA polymerase to downstream gene, to inhibit the expression of downstream gene.When IPTG is added, the activity of promoter It is released.It is higher (being no more than 1mM) that IPTG concentration is added, promoter activity is stronger.Therefore, the dosage of adjusting IPTG can be passed through Obtain the downstream gene expression intensity (Fig. 2 b and table 4) of varying strength.SDS-PAGE detection also demonstrates various concentration inducer The addition of IPTG obtains the sfGFP expression (Fig. 2 c) of varying strength.
3 IPTG inducible expression carrier of table constructs primer
Primer Sequence (5 ' -3 ')a
PAWH-lacO-1 GGAATTGTGAGCGGATAACAATTCCATGCTTTTATTCGAACATCATATTTAAAG
PAWH-lacO-2 GGAATTGTTATCCGCTCACAATTCCTAGTGTATCAATTCCACGATTTTTTC
Under the IPTG induction of 4 various concentration of table, sfGFP expression
Condition Fluorescence intensity (a.u./OD600)
pHT-01 179
PHT-AWH (non-combined operation) 6635
0mM IPTG 516
0.01mM IPTG 929
0.05mM IPTG 1993
0.1mM IPTG 2665
0.5mM IPTG 4132
1mM IPTG 4163
The building and characterization of embodiment 3:xylose inducible expression system
Aporepressor XylR binding site is cloned into promoter P using the primer in table 3AWH-D30-106Transcription initiation site Downstream, while by the lacI gene replacement on pHT01 carrier framework be xylR gene, building XylR express module, thus Construct the expression system of xylose induction type.
Using plasmid pHT-AWH-lac-sfGFP as template, expanded with primer PAWH-xylR-v1/PAWH-xylR-v2 (table 5) Increase carrier framework, expands xylR gene with primer PAWH-xylR-i1/PAWH-xylR-i2, two segments of amplification are recombinated, are obtained The plasmid that lacI is replaced by xylR is obtained, primer PAWH-xylO-1/PAWH-xylO-2 is recycled, passes through the method for full plasmid PCR The binding site of lacI is replaced with to binding site AGTTAGTTTATTGGATAAACAAACTAACT (the SEQ ID of xylR NO.5), final building obtains plasmid pHT-AWH-xyl-sfGFP.
By the recombinant plasmid transformed into bacillus subtilis 168,37 DEG C in LB culture medium, recombination is cultivated under 200rpm Bacterium detects the expression of sfGFP afterwards for 24 hours.
In no inducer xylose, aporepressor xylR can effectively be combined in promoter transcription initiation site downstream, Transcription of the RNA polymerase to promoter is prevented, to inhibit the expression (Fig. 3 a) of downstream gene.When addition various concentration When xylose, the activity of promoter is gradually released, therefore the downstream of varying strength can be obtained by adjusting xylose concentration Gene expression intensities.As the concentration of xylose steps up, the fluorescence signal that sfGFP expression generates therewith enhances, when When xylose concentration meets or exceeds 1% (W/V), the expression of sfGFP is even higher than the control of constitutive expression sfGFP PHT-AWH (Fig. 3 b and table 6).Further SDS-PAGE detection further demonstrates the addition of various concentration inducer xylose Obtain the sfGFP expression (Fig. 3 c) of varying strength.
5 xylose inducible expression carrier of table constructs primer
Under the different xylose concentrations of table 4, sfGFP expression
Condition Fluorescence intensity (a.u./OD600)
pHT-01 179
PHT-AWH (non-combined operation) 6635
0% xylose 393
0.01% xylose 2263
0.05% xylose 3808
0.1% xylose 4322
0.5% xylose 5480
1% xylose 7326
2% xylose 9556
Although the present invention has been described by way of example and in terms of the preferred embodiments, it is not intended to limit the invention, any to be familiar with this skill The people of art can do various change and modification, therefore protection model of the invention without departing from the spirit and scope of the present invention Enclosing subject to the definition of the claims.
SEQUENCE LISTING
<110>Southern Yangtze University
<120>the efficient inducible expression of bacillus subtilis based on artificial Gene expression
<160> 17
<170> PatentIn version 3.3
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Claims (10)

1. a kind of element of controlling gene expression characterized by comprising (1) carrier;(2) artificial Gene expression;(3) it hinders Hold back protein gene;(4) positioned at promoter transcription initiation site downstream can be with the DNA fragmentation in conjunction with aporepressor;It is described artificial Gene expression includes PAWH-D30-106、PAH-D75-106Or PAH-D75-106, nucleotide sequence is respectively such as SEQ ID NO.1, SEQ ID Shown in NO.2, SEQ ID NO.3.
2. element as described in claim 1, which is characterized in that the aporepressor includes LacI, XylR, AraC or TetR.
3. element as claimed in claim 1 or 2, which is characterized in that the carrier includes pHT-01.
4. the plasmid containing any element of claim 1-3.
5. expressing the genetic engineering bacterium of plasmid described in claim 4.
6. a kind of method of regulation destination gene expression, which is characterized in that by claim the 1-3 any element and purpose Gene co-expressing.
7. any element of claim 1-3 is preparing the application in destination protein.
8. any element of claim 1-3 is in the application of food, chemical industry or pharmaceutical field.
9. genetic engineering bacterium described in claim 5 is preparing the application in destination protein.
10. genetic engineering bacterium described in claim 5 is in the application of food, chemical industry or pharmaceutical field.
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PCT/CN2019/078809 WO2020124830A1 (en) 2018-12-17 2019-03-20 Artifical tandem promoter-based efficient inducible bacillus subtilis expression system
US17/160,582 US20210163963A1 (en) 2018-12-17 2021-01-28 Bacillus Subtilis Efficiently-Induced Expression System Based on Artificial Series Promoter

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CN111269926A (en) * 2019-12-31 2020-06-12 江南大学 Cobalt ion inducible protein expression system and application
WO2020124830A1 (en) * 2018-12-17 2020-06-25 江南大学 Artifical tandem promoter-based efficient inducible bacillus subtilis expression system
CN112877352A (en) * 2021-02-08 2021-06-01 华南理工大学 Cumate induction system suitable for corynebacterium glutamicum, plasmid vector constructed by induction system and application
CN115232829A (en) * 2022-05-18 2022-10-25 北京大学口腔医学院 Protein induction expression plasmid in streptococcus mutans, and preparation method and application thereof

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