CN109457038B - Primer and detection method for detecting lactococcus lactis BL19 - Google Patents

Primer and detection method for detecting lactococcus lactis BL19 Download PDF

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CN109457038B
CN109457038B CN201910044708.XA CN201910044708A CN109457038B CN 109457038 B CN109457038 B CN 109457038B CN 201910044708 A CN201910044708 A CN 201910044708A CN 109457038 B CN109457038 B CN 109457038B
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CN109457038A (en
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钟智
孙志宏
李建立
任敏
李伟程
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Inner Mongolia Agricultural University
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Abstract

The invention provides a primer and a detection method for detecting lactococcus lactis BL19, belonging to the technical field of genetic engineering, wherein the primer comprises an upstream primer and a downstream primer; the upstream primer has a nucleotide sequence shown as SEQ ID No. 1; the downstream primer has a nucleotide sequence shown in SEQ ID No. 2. The primer provided by the invention has specificity to lactococcus lactis BL 19.

Description

Primer and detection method for detecting lactococcus lactis BL19
Technical Field
The invention relates to the technical field of genetic engineering, in particular to a primer and a detection method for detecting lactococcus lactis BL 19.
Background
Lactic Acid Bacteria (LAB) contain a variety of industrially important genera including Enterococcus (Enterococcus), Lactobacillus (Lactobacillus), Lactococcus (Lactococcus), Leuconostoc (Leuconostoc), Oenococcus (Oenococcus), Pediococcus (Pediococcus) and Streptococcus (Streptococcus). Lactococcus lactis, a typical lactic acid bacterium, has unique fermentation characteristics and proteolytic ability. Therefore, lactococcus lactis is usually used as a starter of fermented dairy products, and is usually used in the production process of fermented dairy products such as cheese and yogurt. Lactococcus lactis has extremely important economic value as a dairy product starter. However, as related industries of leavening agents in China are relatively laggard, most of leavening agents applied at present are imported, and leavening agent strains with independent intellectual property rights are lacked. However, the domestic leavening agents on the market in China usually have poor fermentation characteristics or obvious defects. Therefore, it is imperative to develop and protect starter strains.
Lactococcus lactis (Lactococcus lactis) BL19 is a starter strain which is separated from traditional fermented dairy yogurt of Russian British and has excellent fermentation characteristics, has good protein hydrolysis capacity and acid production characteristics, and generates unique cheese flavor in the fermentation process. Lactococcus lactis BL19 is therefore suitable as a starter for the production of fermented milk, but no specific primers for this strain are known.
Disclosure of Invention
The invention aims to provide a primer for detecting lactococcus lactis BL19, and the primer provided by the invention has specificity to lactococcus lactis BL 19.
The invention provides a primer for detecting lactococcus lactis BL19, which comprises an upstream primer and a downstream primer;
the upstream primer has a nucleotide sequence shown as SEQ ID No. 1;
the downstream primer has a nucleotide sequence shown in SEQ ID No. 2.
The invention provides a method for detecting lactococcus lactis BL19, which comprises the following steps: extracting the genome DNA of a sample to be detected, carrying out PCR amplification by using the primer in the technical scheme by using the genome DNA as a template to obtain an amplification product, wherein the sample to be detected contains lactococcus lactis BL19 when the fragment of the amplification product is 324 bp.
Preferably, the PCR amplification system comprises 10 XPCR mix10 uL of each 50 uL, 0.4 uL of each 10mol/L upstream and downstream primers, 100ng genomic DNA, ddH2O was supplemented to 50. mu.L.
Preferably, the procedure of PCR amplification comprises: pre-denaturation at 95 ℃ for 3 min; denaturation at 95 deg.C for 1min, annealing at 60 deg.C for 45s, extension at 72 deg.C for 90s, and circulating for 30 times; finally, extension is carried out for 7min at 72 ℃ and storage is carried out at 4 ℃. .
Preferably, the sample to be tested comprises fermented yoghurt.
The invention provides a primer for detecting lactococcus lactis BL19, which comprises an upstream primer and a downstream primer; the upstream primer has a nucleotide sequence shown as SEQ ID No. 1; the downstream primer has a nucleotide sequence shown in SEQ ID No. 2. The primer provided by the invention has specificity to lactococcus lactis BL 19.
Drawings
FIG. 1 is a gel diagram of specific primer-verified electrophoresis;
FIG. 2 is an electrophoresis gel diagram of a sample to be tested using specific primers.
Detailed Description
The invention provides a primer for detecting lactococcus lactis BL19, which is characterized by comprising an upstream primer and a downstream primer; the upstream primer has a nucleotide sequence shown as SEQ ID No. 1; the downstream primer has a nucleotide sequence shown in SEQ ID No. 2.
In the invention, the upstream primer has a nucleotide sequence shown as SEQ ID No.1, and the specific sequence is as follows:
ATCATCGGATAGTCCTGCGTTTT;
the upstream primer has a nucleotide sequence shown as SEQ ID No.2, and the specific sequence is as follows:
TGTTGCTGTCATTTTAGGGTTAC。
in the invention, the primer is designed according to a section of specific fragment in the whole genome sequence of lactococcus lactis BL19, the specific fragment has a nucleotide sequence shown in SEQ ID No.3, and the specific sequence is as follows:
GTGCGTGAGGCAGTATTTGGGATTAGTCGAAGAAAAGTTTATACAACCGAAGTTTATGTCGGATTGAACCCCGAGTTTATGCTTAAAAGTCACCTGTTGTTGCCTGCTGCGTATGCCAACACCGTCTTAAATTACTTACTTGATTTCCAGCGGGAAACGACAGAATATCAAAAAATGTATGCTGAGTCTAAGCCATATCAGACCGGTGATTTATATGTATTTGGCGACCCAGACTGGCAACATCCGGATTATCCTAATGGTCTAGCACTCTTTGACCCTAAGCATAATGTTGCTGTCATTTTAGGGTTACGGTATTTTGGCGAGTATAAGAAGGCGACTTTGACTCTGGCTTGGGCGACAGCGCATGACAATAATTATATTGCTTGTCATGGTGGGATGAAACAGTACACCTTGAGTGATGGTAAAAAGTATACCATGGCGGCATTTGGTTTGTCGGGTTCAGGAAAGTCGACGATTACGCTAGCTAAGAATGATAGTAAATATCAAGTGACCTTCTTACATGATGATGCCTTTATTATTAATCATCAAGATGGCTCGACGACAGCTTTGGAGCCTGCTTATTTTGATAAAACGCAGGACTATCCGATGATGAGAGAAATGGTCAAATATTTCTTGACCTGTCAAAATGTTGGTGTCACGCTAGATGAAGTTGGGAAGAAAGTTATTGTTACAGAAGATATTCGAAATGGTAACGGTCGAACAGTCAAGTCTAAACTGGTCACGCCGAATCGTGTGGACCATATTAAAGAGAAAATCAATGCTGTTTACTGGATTATGCAAGATGAGAGTTTGCCACCAGTTGTCAAGGTCAGCGACCTTAATTTGGCATCTATTTTTGGTTTAACACTTGCGACCAAACGCTCAACGGCTGAAAATATCGTTGGGGATATTGATGTAAATGAAATTGTGATTGAATCTTTTGCTAATCCGTTTCGCTCATATGCACTGGGTGAAGATTTCACGGCCTTTAAAAAGTTGTTTGAGGATAAAGCGGTTGACTGTTATATACTGAATACGGGTTATTTTAATGGTGCAAAAATTAAGCCACACCATACACTAGGCGCGATTGAGACGATTATTGATGGTATTGGTAATTTTGTGCCTTTTGGACCAATTGAAGGTCTATCTTATCTGCCAATCAAACATCTCAATCCCGACTTTGAACATGAGGGTTATGTTGCATCCTTAAAAGCAAGTATGACAGAACGTTTACGGTTCATTGAGTCTAAAAAATTGGAAATGAATGCCTACCATGCCTTACCATTGGGGACAGAGGATGCTGTTAAAAAGATTTTAGCGGCGCTTGGCTAA。
the invention also provides a method for detecting lactococcus lactis BL19, which comprises the following steps: extracting the genome DNA of a sample to be detected, carrying out PCR amplification by using the primer in the technical scheme by using the genome DNA as a template to obtain an amplification product, wherein the sample to be detected contains lactococcus lactis BL19 when the fragment of the amplification product is 324 bp.
The method for extracting the genome DNA of the sample to be detected is not particularly limited, and a conventional extraction method is adopted.
In the present invention, the system used for PCR amplification preferably comprises 10 XPCR mix10 μ L per 50 μ L, 0.4 μ L each of 10mol/L upstream and downstream primers, 100ng of genomic DNA, ddH2O was supplemented to 50. mu.L.
In the present invention, the procedure of PCR amplification preferably includes: pre-denaturation at 95 ℃ for 3 min; denaturation at 95 deg.C for 1min, annealing at 60 deg.C for 45s, extension at 72 deg.C for 90s, and circulating for 30 times; finally, extension is carried out for 7min at 72 ℃ and storage is carried out at 4 ℃.
In the present invention, the sample to be tested preferably comprises fermented yogurt.
The primer and the detection method for detecting lactococcus lactis BL19 according to the present invention are further described in detail with reference to the following specific examples, and the technical solutions of the present invention include, but are not limited to, the following examples.
Example 1
Lactococcus lactis (Lactococcus lactis) BL19 specific primer specificity test
1. Extracting metagenome DNA in the fermented dairy product sample:
washing 1.0g of sample, placing the washed thallus in a 1.5mL centrifuge tube, immediately placing the thallus in liquid nitrogen for complete freezing, taking out the thallus, placing the thallus in a 65 ℃ water bath for 5min, repeatedly freezing and thawing for 3 times, adding 0.1mL of SDS and 10.0 mu L of 10mg/mL proteinase K, shaking the thallus in a 37 ℃ constant temperature shaking table at 200r/min for 2h, centrifuging at the room temperature of 12000g for 10min, collecting supernatant, transferring the supernatant into another centrifuge tube, centrifuging the supernatant and isometric chloroform at 12000g for 10min, sucking the supernatant, transferring the supernatant into another centrifuge tube for phenol-chloroform extraction for 2 times, precipitating total DNA by 0.1 time volume of glacial propionic acid, then washing and precipitating twice by 70% ethanol, and dissolving back for standby.
2. Lactococcus lactis (Lactococcus lactis) BL19 specific primer specificity detection
Based on a specific fragment (SEQ ID No.3) in the whole genome sequence of Lactococcus lactis BL19, the following primer sequences are designed:
BL19R(SEQ ID No.2):TGTTGCTGTCATTTTAGGGTTAC;
BL19F(SEQ IDNo.1):ATCATCGGATAGTCCTGCGTTTT。
after designing a Lactococcus lactis BL19 specific primer, the specificity of the primer is verified, and a strain which has higher taxonomic position homology with Lactococcus lactis BL19, such as Lactococcus lactis subspT、Lactococcus lactis subsp.cremoris ATCC19257T、Lactococcus lactis subsp.tructae DSM2152T、Lactococcus lactis subsp.hordniae DSM20450T、Streptococcus thermophiles ATCC19258T、Streptococcus tigurinus DSM24864T、Streptococcus suis ATCC43765T、Streptococcus sobrinus ATCC33478T、Streptococcus sinensis DSM14990T、Streptococcus shiloi ATCC51499T、Streptococcus sanguinis ATCC10556T、Streptococcus saliviloxodontae JSM19288T、Streptococcus salivarius ATCC7073T、Streptococcus saccharolyticus ATCC43076T、Bacteroidesfragilis JCM 11019T、Bifidobacterium animalis DSM10140T、Bifidobacterium breve ATCC 15700、Bifidobacterium longumATCC15697、Enterococcus faecalis ATCC 19433T、Enterococcus faecium ATCC19434, Escherichia coli JCM 1649 and Lactobacillus acidophilus ATCC4356TIn total 22 strains were subjected to PCR amplification and alignment analysis.
An amplification system:
reaction system 50 μ L: 10 XPCRmix 10 μ L, 10mol/L upstream and downstream primers 0.4 μ L each, DNA template 100ng, ddH2O is supplemented to 50 mu L;
amplification conditions:
pre-denaturation at 95 deg.C for 5min3 min; denaturation at 95 deg.C for 1min, annealing at 60 deg.C for 45s, extension at 72 deg.C for 1min for 90s, and circulating for 30 times; finally, extension is carried out for 7min at 72 ℃ and storage is carried out at 4 ℃.
Agarose gel electrophoresis
Performing electrophoresis on the PCR product and 1% agarose gel at a voltage of 5V/cm for 20-30min, dyeing, performing ultraviolet photography, and detecting the amplification effect; the specificity of the Lactococcus lactis BL19 specific primer is determined to be good or not according to whether an expected characteristic band appears at 324bp or not by taking Lactococcus lactis BL19 strain DNA containing a target amplified fragment as a positive control of a template and sterile water as a negative control of the template.
As shown in FIG. 1, the primer amplified only Lactococcus lactis BL19, but did not amplify the remaining 22 strains. The comparison amplification experiment shows that the primer designed by the invention has good specificity.
Example 2
Qualitative detection of Lactococcus lactis (Lactococcus lactis) BL19
1. Extraction of metagenomic DNA from fermented dairy product (or feces) sample
A sample of yogurt fermented with Lactococcus lactis (Lactococcus lactis) BL19 was collected as sample 1, and feces of volunteers who took Lactococcus lactis (Lactococcus lactis) BL19 fermented yogurt samples were collected as sample 2. Adopting a liquid nitrogen freeze thawing-CTAB method: washing 1.0g of sample, putting the eluted thallus into a 1.5mL centrifuge tube, immediately putting the centrifuge tube into liquid nitrogen for complete freezing, taking out the thallus, putting the thallus into a 65 ℃ water bath for thawing (about 5min), repeatedly freezing and thawing for 3 times, adding 0.1mL 10% SDS and 10.0 mu L10 mg/mL proteinase K, shaking for 2h at 200r/min in a constant temperature shaking table at 37 ℃, centrifuging for 10min at 10000g at room temperature, and collecting supernatant and transferring the supernatant into another centrifuge tube. Centrifuging the supernatant with equal volume of chloroform at 10000g for 10min (to separate the precipitate, aqueous phase and organic phase), sucking the supernatant and transferring to another centrifuge tube to perform phenol chloroform extraction for 2 times, precipitating total DNA with 0.1 times volume of sodium acetate and 1 time volume of ice isopropanol, washing the precipitate with 70% ethanol for 2 times, and re-dissolving for later use.
2. Specific amplification of Lactococcus lactis (Lactococcus lactis) BL19 specific primers
An amplification system:
reaction system 50 μ L: 10 XPCRmix 10 μ L, 10mol/L upstream and downstream primers 0.4 μ L each, DNA template 100ng, ddH2O is supplemented to 50 mu L;
amplification conditions:
pre-denaturation at 95 ℃ for 3 min; denaturation at 95 deg.C for 1min, annealing at 60 deg.C for 45s, extension at 72 deg.C for 90s, and circulating for 30 times; finally, extension is carried out for 7min at 72 ℃ and storage is carried out at 4 ℃.
The primer sequence is as follows:
BL19R(SEQ ID No.2):TGTTGCTGTCATTTTAGGGTTAC;
BL19F(SEQ IDNo.1):ATCATCGGATAGTCCTGCGTTTT。
agarose gel electrophoresis
Performing electrophoresis on the PCR product and 1% agarose gel at a voltage of 5V/cm for 20-30min, dyeing, performing ultraviolet photography, and detecting the amplification effect; the positive control of the template is Lactococcus lactis BL19 strain DNA containing the target amplified fragment, the negative control of the template is sterile water, and whether the sample contains Lactococcus lactis BL19 is determined according to whether an expected characteristic band appears at 324 bp.
The amplification effect is shown in FIG. 2, sample 1 is an unknown sample, sample BL19 is a positive control using the strain DNA containing the target amplified fragment as a template, sample 2 is a negative control using sterilized water as a template, and sample 3 is an unknown sample for detection. As can be seen from the figure, the positive control can amplify the target band with clear and bright band, while the negative control has no corresponding amplification product. While sample 1 contained Lactococcus lactis (Lactococcus lactis) BL19, sample 3 did not contain Lactococcus lactis (Lactococcus lactis) BL 19.
From the above examples, it can be seen that the primers provided by the present invention are specific to lactococcus lactis BL 19.
The foregoing is only a preferred embodiment of the present invention, and it should be noted that, for those skilled in the art, various modifications and decorations can be made without departing from the principle of the present invention, and these modifications and decorations should also be regarded as the protection scope of the present invention.
Sequence listing
<110> university of inner Mongolia agriculture
<120> primer for detecting lactococcus lactis BL19 and detection method
<160> 3
<170> SIPOSequenceListing 1.0
<210> 1
<211> 23
<212> DNA
<213> Artificial Sequence (Artificial Sequence)
<400> 1
atcatcggat agtcctgcgt ttt 23
<210> 2
<211> 23
<212> DNA
<213> Artificial Sequence (Artificial Sequence)
<400> 2
tgttgctgtc attttagggt tac 23
<210> 3
<211> 1332
<212> DNA
<213> Artificial Sequence (Artificial Sequence)
<400> 3
gtgcgtgagg cagtatttgg gattagtcga agaaaagttt atacaaccga agtttatgtc 60
ggattgaacc ccgagtttat gcttaaaagt cacctgttgt tgcctgctgc gtatgccaac 120
accgtcttaa attacttact tgatttccag cgggaaacga cagaatatca aaaaatgtat 180
gctgagtcta agccatatca gaccggtgat ttatatgtat ttggcgaccc agactggcaa 240
catccggatt atcctaatgg tctagcactc tttgacccta agcataatgt tgctgtcatt 300
ttagggttac ggtattttgg cgagtataag aaggcgactt tgactctggc ttgggcgaca 360
gcgcatgaca ataattatat tgcttgtcat ggtgggatga aacagtacac cttgagtgat 420
ggtaaaaagt ataccatggc ggcatttggt ttgtcgggtt caggaaagtc gacgattacg 480
ctagctaaga atgatagtaa atatcaagtg accttcttac atgatgatgc ctttattatt 540
aatcatcaag atggctcgac gacagctttg gagcctgctt attttgataa aacgcaggac 600
tatccgatga tgagagaaat ggtcaaatat ttcttgacct gtcaaaatgt tggtgtcacg 660
ctagatgaag ttgggaagaa agttattgtt acagaagata ttcgaaatgg taacggtcga 720
acagtcaagt ctaaactggt cacgccgaat cgtgtggacc atattaaaga gaaaatcaat 780
gctgtttact ggattatgca agatgagagt ttgccaccag ttgtcaaggt cagcgacctt 840
aatttggcat ctatttttgg tttaacactt gcgaccaaac gctcaacggc tgaaaatatc 900
gttggggata ttgatgtaaa tgaaattgtg attgaatctt ttgctaatcc gtttcgctca 960
tatgcactgg gtgaagattt cacggccttt aaaaagttgt ttgaggataa agcggttgac 1020
tgttatatac tgaatacggg ttattttaat ggtgcaaaaa ttaagccaca ccatacacta 1080
ggcgcgattg agacgattat tgatggtatt ggtaattttg tgccttttgg accaattgaa 1140
ggtctatctt atctgccaat caaacatctc aatcccgact ttgaacatga gggttatgtt 1200
gcatccttaa aagcaagtat gacagaacgt ttacggttca ttgagtctaa aaaattggaa 1260
atgaatgcct accatgcctt accattgggg acagaggatg ctgttaaaaa gattttagcg 1320
gcgcttggct aa 1332

Claims (4)

1. A method of detecting lactococcus lactis BL19, comprising: extracting genome DNA of a sample to be detected, performing PCR amplification by using the genome DNA as a template and a primer to obtain an amplification product, wherein the sample to be detected contains lactococcus lactis BL19 when the fragment of the amplification product is 324 bp;
the primers comprise an upstream primer and a downstream primer;
the upstream primer has a nucleotide sequence shown as SEQ ID No. 1;
the downstream primer has a nucleotide sequence shown as SEQ ID No. 2.
2. The detection method according to claim 1, wherein the PCR amplification system comprises 10 XPCRmix 10. mu.L of 10mol/L of upstream and downstream primers, 0.4. mu.L of genomic DNA100ng, ddH, and a total of 50. mu.L2O was supplemented to 50. mu.L.
3. The detection method according to claim 1 or 2, wherein the PCR amplification procedure comprises: pre-denaturation at 95 ℃ for 3 min; denaturation at 95 deg.C for 1min, annealing at 60 deg.C for 45s, extension at 72 deg.C for 90s, and circulating for 30 times; finally, extension is carried out for 7min at 72 ℃ and storage is carried out at 4 ℃.
4. The assay of claim 1, wherein the sample to be assayed comprises fermented yogurt.
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JP2007244348A (en) * 2006-03-20 2007-09-27 Fujicco Co Ltd Primer set for detecting lactococcus lactis subsp. cremoris fc strain, and method for molecularly identifying lactococcus lactis subsp. cremoris fc strain by using the primer set
CN101717828A (en) * 2009-12-14 2010-06-02 内蒙古农业大学 Method for rapidly detecting kinds of lactobacillus in fermented dairy product
JP2011217734A (en) * 2010-03-23 2011-11-04 Morinaga Milk Ind Co Ltd Method for identifying lactococcus strain
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CN106480214A (en) * 2016-10-28 2017-03-08 保龄宝生物股份有限公司 A kind of PCR quick detection special primer of Lactobacillus helveticus and method
CN107937581A (en) * 2017-12-28 2018-04-20 内蒙古农业大学 Amplimer for lactic acid bacteria sequencing is to, lactic acid bacteria kind identification method and application
CN109022330A (en) * 2018-09-12 2018-12-18 内蒙古农业大学 One plant has high proteolytic ability and produces Lactococcus lactis BL19 and its application of junket fragrance

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