CN109423493B - Cold-resistant gene OSRYH1 of rice and application thereof - Google Patents
Cold-resistant gene OSRYH1 of rice and application thereof Download PDFInfo
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- CN109423493B CN109423493B CN201710787875.4A CN201710787875A CN109423493B CN 109423493 B CN109423493 B CN 109423493B CN 201710787875 A CN201710787875 A CN 201710787875A CN 109423493 B CN109423493 B CN 109423493B
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Abstract
The invention discloses a cold-resistant gene of rice and application thereof, wherein the nucleotide sequence of the cold-resistant gene OSRYH1 of rice is a sequence shown as SEQ ID NO.1, and the amino acid sequence of the encoded protein of the cold-resistant gene is a sequence shown as SEQ ID NO. 2. The rice cold-resistant gene OSRYH1 and ubi promoter drive the OSRYH1 gene, so that the over-expressed transgenic plant has obvious cold-resistant effect and can be applied to improving the cold-resistant performance of plants. Meanwhile, OSRYH1 is derived from rice, so that the rice transformed with OSRYH1 gene has reduced concerns about food safety.
Description
Technical Field
The invention relates to the technical field of genes, in particular to a cold-resistant gene OSRYH1 of rice and application thereof.
Background
The rice is the staple food of more than half of the population all over the world, but the global climate constantly changes, and extreme weather often happens, and low-temperature cold damage can occur every year to rice production, seriously influences the output, endangers the grain safety. According to statistics, the rice yield loss caused by low-temperature cold damage in China is about 10% every year. Research shows that the cold resistance of rice is controlled by gene, so that the development of cold resistance gene and the improvement of the cold resistance of rice are effective ways of coping with low-temperature cold damage and ensuring the safety of rice production and grain.
Disclosure of Invention
The invention aims to overcome the defects of the prior art and provide a cold-resistant gene OSRYH1 of rice and application thereof, the cold-resistant gene OSRYH1 of rice can obviously improve the cold resistance of rice, the survival rate of the rice with the gene OSRYH1 is more than 90% after the rice is treated at low temperature for 3 days and recovered at normal temperature for 7 days, and the gene OSRYH1 of rice can be applied to preparing transgenic cold-resistant rice.
In order to solve the technical problems, the invention provides a cold-resistant gene OSRYH1 of rice, wherein the nucleotide sequence of the cold-resistant gene OSRYH1 of rice is a sequence shown as SEQ ID NO. 1; the amino acid sequence of the coding protein of the cold-resistant gene OSRYH1 of the rice is the sequence shown in SEQ ID NO. 2.
As a general technical concept, the invention also provides an application of the cold-resistant gene OSRYH1 of rice in improving the cold resistance of rice.
The application method preferably comprises the following steps:
s1, designing a primer according to the cold-resistant gene OSRYH1 of the rice, and carrying out PCR amplification to clone OSRYH 1;
s2, constructing the clone OSRYH1 into a vector pCAMBIAubi1300 to obtain a pCAMBIAubi1300-OSRYH1 vector;
s3, transforming the pCAMBIAubi1300-OSRYH1 vector into Nipponbare rice by utilizing an agrobacterium transgenic method to obtain cold-resistant rice.
In the above application method, preferably, in the primers, the upstream primer is a sequence shown by SEQ ID No.3, and the downstream primer is a sequence shown by SEQ ID No. 4.
Compared with the prior art, the invention has the advantages that:
(1) the invention provides a cold-resistant gene OSRYH1 of rice, a ubi promoter drives the gene OSRYH1, the cold-resistant effect of an over-expressed transgenic plant is obvious, and the gene can obviously improve the cold resistance of the rice in southern double cropping rice cultivation areas which are easily subjected to cold damage in China and rice planting areas which are easily subjected to abnormal weather, and can respond to sudden cold damage in the growth period of the rice and ensure the production of the rice. The cold resistance of the rice transformed with the OSRYH1 gene is obviously improved, the survival rate is more than 90 percent after the rice is recovered at normal temperature for 7 days after being processed at low temperature for 3 days, and the survival rate of the contrast is less than 5 percent (figure 1). The gene is applied to genetic improvement of rice, and can greatly improve the cold resistance of the rice.
(2) The invention provides a cold-resistant gene OSRYH1 of rice, which is derived from rice, so that worry about food safety of the rice transformed with the gene OSRYH1 is reduced. The deep research on the gene can reveal the molecular mechanism of regulating and controlling the cold resistance of rice and provide new gene resources for the genetic improvement of the cold resistance of rice and other plants.
Drawings
In order to make the objects, technical solutions and advantages of the embodiments of the present invention clearer, the technical solutions in the embodiments of the present invention will be clearly and completely described below with reference to the drawings in the embodiments of the present invention.
FIG. 1 is a graph showing the expression level of OSRYH1 along with the time of cold stress in example 1 of the present invention.
FIG. 2 is a graph showing the results of the expression levels of LOC _ Os03g09140 in roots, stems and leaves in example 1 of the present invention.
FIG. 3 is a graph showing the results of cold treatment of cold-resistant rice in example 2 of the present invention.
Detailed Description
The invention is further described below with reference to the drawings and specific preferred embodiments of the description, without thereby limiting the scope of protection of the invention.
The materials and equipment used in the following examples are commercially available.
Example 1:
an identification of a cold-resistant candidate gene OSRYH1 of rice.
The cold-resistant gene OSRYH1 of rice in this example is located at the cold-resistant QTL site of rice located on the third chromosome by whole genome association analysis, and further the difference between the gene sequences of the cold-resistant population and the cold-sensitive population is analyzed and found by
LOC _ Os03G09140 lacks 27bp in a cold-sensitive variety, is positioned in the third intron region of the gene, is therefore determined as a candidate gene, belongs to ras small G protein gene, has high homology with ryh1 gene in yeast and is named as OSRYH 1. Then, it was further confirmed from the results of experiment 1 and experiment 2 that OSRYH1 is a cold-resistant candidate gene.
The OSRYH1 gene sequence is a nucleotide sequence shown as SEQ ID NO.1, and specifically comprises the following steps:
ATGGCGCCGGTGGTGTCGGCGCTGGCCAAGTACAAGCTGGTGTTCCTCGGCGACCAGGCGGTGGGGAAGACGGCCATCATCACCCGCTTCATGTACGACAAGTTCGACGCCACCTACCAGGCGACGATCGGGATCGATTTCCTCTCCAAGACGATGTACCTCGAAGACCGAACCGTACGGCTGCAGCTTTGGGATACAGCTGGGCAGGAGAGGTTCCGGAGCTTGATCCCAAGTTACATCAGGGATTCTTCTGTGGCAGTGATTGTTTACGATGTGACTGACAGGCAGTCCTTTTTGAGTATATCGAAGTGGATTGAAGAGGTAAATACACAACGAGGCGGAGATGTGATCATCGTCCTTGTTGGAAATAAAACAGACCTTGTTGACAAGAGGCAAATATCCACTGACGAAGGAGAAGCCAAGGCACAGGAGCACGGCGCCATGTTCATGGAAACCAGCGCAAAAGCTGGATTCAACATCAAGCCACTGTTTCGCAAGATCGCTGCATCGCTGCCTGGAATGGAGGCGCTCTCATCGGCAAAGCAGGAAGACATGGTGGACATAAACCTACGGCCTGCTGCCTCCGGGCAAATACCTTCAGGGGCAGAAGCACAAGAAGAACAGAAAGCAGGCGGTTGTTCCTGCTGA。
experiment 1: analyzing the expression trend of the cold-resistant gene OSRYH1 of the rice.
(1) Putting 3-week-old Nipponbare rice seedlings into a light incubator for cold treatment at 8 ℃, 12H light and 75% humidity for 3 days, and taking leaf samples at 0 hour, 12 hours, 24 hours, 36 hours, 48 hours and 72 hours respectively.
(2) Total RNA in leaf samples was extracted separately and reverse transcribed to synthesize the first strand cDNA.
(3) Primers were synthesized based on the cDNA sequence of the LOC _ Os03g09140 gene, and the expression of LOC _ Os03g09140 at each treatment period was detected using Real-time PCR.
See figure 1 for results: the expression level of OSRYH1 was greatly increased with the increase of cold stress time, indicating that OSRYH1 was induced by cold stress.
Experiment 2: specific expression of the rice cold-resistant gene OSRYH1 in root, stem and leaf tissues is analyzed.
(1) Taking the roots, stems and leaves of the Japanese fine rice which is 3 weeks old.
(2) Extracting total RNA from root, stem and leaf samples respectively, and performing reverse transcription to synthesize a first strand of cDNA.
(3) The specificity of expression of LOC _ Os03g09140 in root, stem and leaf tissues under normal growth conditions was also examined.
See figure 2 for results: LOC _ Os03g09140 is shown to be expressed in significantly higher amounts in roots than in stems and leaves.
Example 2:
an application of a cold-resistant gene OSRYH1 of rice in preparing cold-resistant rice.
On the basis of example 1, in this example, OSRYH1 is used to construct an overexpression vector, and then a transgenic technology is used to prepare cold-resistant rice. The method of the embodiment comprises the following steps:
(1) and (3) extracting total RNA of leaves of the Japanese fine rice.
1.1, taking 0.1g of Nipponbare rice leaves, grinding the leaves in liquid nitrogen, and transferring the leaves into a 1.5mL RNAase-free centrifuge tube. Adding 1.0mL of Trizol extracting solution into an RNAase-free centrifuge tube, fully whirling, shaking and mixing uniformly to obtain a mixed solution I.
1.2, continuously adding 200 mu L of chloroform into the mixed solution I, and fully vortexing and oscillating to obtain a mixed solution II.
1.3, centrifuging the mixed solution II at 12000rpm for 10min at 4 ℃. And adding the centrifuged supernatant into another 1.5mL RNAase-free centrifuge tube, adding isopropanol with the volume equivalent to 2/3 of the supernatant, and uniformly mixing to obtain a mixed solution III.
1.4, the mixed solution is placed on ice for 30min, and centrifuged at 12000rpm for 10min at 4 ℃. After centrifugation, the supernatant was removed, and the precipitate was rinsed by adding 1mL of 70% ethanol, centrifuged at 12000rpm for 5 minutes, and the supernatant was removed. The centrifuged precipitate was left at room temperature for 5 minutes to remove 70% ethanol, and 50. mu.L of RNase-free ddH was added2And O, dissolving the precipitated total RNA.
The content of the extracted total RNA was measured at 342 ng/. mu.L and stored in a freezer at-80 ℃.
(2) First strand cDNA Synthesis.
2.1, the cDNA synthesis reaction system is as follows:
2X qPCR reverse transcription Mix: 10 mu L of the solution;
total RNA (50-1000 ng): 2 mu L of the solution;
H2O:8μL。
2.2, reaction procedure: the first strand cDNA is obtained by storing at 25 deg.C for 10min, 50 deg.C for 30min, and 85 deg.C for 5min at 4 deg.C. After first strand cDNA synthesis, the cDNA was stored at-20 ℃ in a freezer.
(3) Cloning of the OSRYH1 Gene: the OSRYH1 gene was cloned using RT-PCR technique. The method specifically comprises the following steps:
3.1, primer design:
forward primer (Forward primer): 5'-GGATCCATGGCGCCGGTGGTGTC-3' (SEQ ID NO. 3);
reverse primer (downstream primer): 5'-AAGCTTTCAGCAGGAACAACCGCCTG-3' (SEQ ID NO. 4).
3.2, RT-PCR reaction system:
2×KOD buffer:25μL;
10mM dNTPs:1μL:
10mM Forward primer:1μL:
10mM Reverse primer:1μL:
KOD DNA polymerase:1μL:
cDNA template (first strand cDNA obtained in step (2)): 1 mu L of the mixture is added into the solution,
ddH2O:20μL。
3.3, reaction program: pre-denaturation at 95 ℃ for 3 min; denaturation at 95 ℃ for 30 s; annealing at 55 deg.C for 30 min; extension is carried out for 4s at 68 ℃, and the steps of cyclic denaturation, annealing and extension are carried out for 35 times; final extension at 68 ℃ for 5 min; and storing at 4 ℃ to obtain an RT-PCR product.
And 3.4, carrying out electrophoresis and detection on the RT-PCR product in 1% agarose gel, cutting a target band, and recovering by using a gel recovery kit to obtain a recovered product.
(4) And (5) constructing a transformation vector.
4.1, cloning the recovered band into pEASY-Blunt vector by using T-zero kit to obtain reaction product of the recovered product in step (4).
Reaction system: PCR product 4.5. mu.L (40-50ng), pEASY-Blunt 0.5. mu.L.
4.2, mixing the reaction products obtained in the step 5.1, centrifuging for 5s for a short time, and standing for 15min at 25 ℃.
4.3 and then transforming JM109 Escherichia coli competent cells with a heat shock method to obtain a transformant.
4.4 transformants were cultured at 37 ℃ for 1h, then spread evenly on 50mg/L kanamycin (kanamycin) LB plates, and cultured at 37 ℃ for 16 h.
And 4.5, selecting a single clone, and carrying out colony PCR detection to obtain a positive clone.
Performing DNA sequencing on the cloned OSRYH1 gene, wherein the DNA sequence of the OSRYH1 gene is shown as SEQ ID NO: 1, specifically:
ATGGCGCCGGTGGTGTCGGCGCTGGCCAAGTACAAGCTGGTGTTCCTCGGCGACCAGGCGGTGGGGAAGACGGCCATCATCACCCGCTTCATGTACGACAAGTTCGACGCCACCTACCAGGCGACGATCGGGATCGATTTCCTCTCCAAGACGATGTACCTCGAAGACCGAACCGTACGGCTGCAGCTTTGGGATACAGCTGGGCAGGAGAGGTTCCGGAGCTTGATCCCAAGTTACATCAGGGATTCTTCTGTGGCAGTGATTGTTTACGATGTGACTGACAGGCAGTCCTTTTTGAGTATATCGAAGTGGATTGAAGAGGTAAATACACAACGAGGCGGAGATGTGATCATCGTCCTTGTTGGAAATAAAACAGACCTTGTTGACAAGAGGCAAATATCCACTGACGAAGGAGAAGCCAAGGCACAGGAGCACGGCGCCATGTTCATGGAAACCAGCGCAAAAGCTGGATTCAACATCAAGCCACTGTTTCGCAAGATCGCTGCATCGCTGCCTGGAATGGAGGCGCTCTCATCGGCAAAGCAGGAAGACATGGTGGACATAAACCTACGGCCTGCTGCCTCCGGGCAAATACCTTCAGGGGCAGAAGCACAAGAAGAACAGAAAGCAGGCGGTTGTTCCTGCTGA。
the coding amino acid sequence of OSRYH1 gene is shown as SEQ ID NO: 2, specifically:
MAPVVSALAKYKLVFLGDQAVGKTAIITRFMYDKFDATYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVTDRQSFLSISKWIEEVNTQRGGDVIIVLVGNKTDLVDKRQISTDEGEAKAQEHGAMFMETSAKAGFNIKPLFRKIAASLPGMEALSSAKQEDMVDINLRPAASGQIPSGAEAQEEQKAGGCSC。
4.6, selecting positive clones, extracting plasmid DNA, carrying out double enzyme digestion on BamH1 and HindIII, and recovering the gene fragment OSRYH 1. The pCAMBIAubi1300 vector was double digested with BamH1 and HindIII and recovered. The OSRYH1 gene fragment was ligated to the same double-digested pCAMBIAubi1300 vector to obtain pCAMBIAubi1300-OSRYH1 vector.
Connecting a reaction system: OSRYH 1: 2 mu L of the solution; pcambiubi 1300: 2 mu L of the solution; t4DNA ligase: 0.5 mu L; t4DNA ligase buffer: 0.5. mu.L.
And (3) connecting: 22 ℃ for 3 h.
4.7 the pCAMBIAubi1300-OSRYH1 vector was transformed into competent cells of Escherichia coli JM109 by heat shock method, and then applied evenly to 50mg/L kanamycin (kanamycin) LB plate and cultured at 37 ℃ for 16 hours. Then selecting a single clone, extracting plasmid DNA in the single clone, carrying out double enzyme digestion detection by using BamH1 and HindIII, and selecting a positive clone for the transgenosis of rice.
(5) Obtaining the transgenic rice plant with the OSRYH1 gene.
5.1, introducing the pCAMBIAubi1300-OSRYH1 vector into an Agrobacterium EHA105 strain, infecting mature embryo callus of the Nipponbare rice, and obtaining resistant callus through co-culture, recovery culture and screening culture (the hygromycin concentration in the screening culture medium is 50 mg/L).
And 5.2, culturing the resistant callus through differentiation, rooting and the like to obtain a regeneration plant.
And 5.3, transplanting the regenerated plants into a nutrition pot, and planting the plants in a greenhouse. Taking leaves of the survived regenerated plants, extracting DNA, and detecting the regenerated plants by using a PCR technology, wherein the plants containing the OSRYH1 gene are positive trans-OSRYH 1 gene plants.
Experiment 3: and verifying the cold resistance of the transgenic plant.
Positive transgenic OSRYH1 gene plants were planted in nutrition pots, 6 plants were planted in each pot, and the repetition was repeated 3 times, and normal growth was carried out in a greenhouse for 3 weeks using japanese fine rice as a control. Then, 3 weeks of the size of the plants were subjected to 8 ℃ cold treatment. The cold treatment is carried out for 3d, the normal temperature is recovered for 7d, and the phenotype is observed.
See figure 3 for results: the leaves of the positive transgenic OSRYH1 plant were found to be still green, whereas the leaves of the control Nipponbare rice plants had withered. The result shows that the cold resistance of the rice can be obviously improved by the over-expression of the OSRYH1 gene. After 3 times of repeated experiments, the OsRYH1 gene-transformed rice shows strong cold resistance. Therefore, the experimental result proves that the OSRYH1 gene can obviously improve the cold resistance of rice and is a new gene for improving the cold resistance of rice.
The foregoing is merely a preferred embodiment of the invention and is not intended to limit the invention in any manner. Although the present invention has been described with reference to the preferred embodiments, it is not intended to be limited thereto. Those skilled in the art can make many possible variations and modifications to the disclosed embodiments, or equivalent modifications, without departing from the spirit and scope of the invention, using the methods and techniques disclosed above. Therefore, any simple modification, equivalent replacement, equivalent change and modification made to the above embodiments according to the technical essence of the present invention are still within the scope of the protection of the technical solution of the present invention.
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Claims (1)
1. An application of a cold-resistant gene OSRYH1 of rice in improving the cold resistance of rice, wherein the nucleotide sequence of the cold-resistant gene OSRYH1 of rice is a sequence shown as SEQ ID NO. 1; the amino acid sequence of the coding protein of the cold-resistant gene OSRYH1 of the rice is the sequence shown in SEQ ID NO. 2.
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CN110373424B (en) * | 2019-07-09 | 2022-12-23 | 西藏自治区农牧科学院农业研究所 | Production method of cold-resistant rice containing HVUL5H49059.2 gene |
CN112321691A (en) * | 2020-11-10 | 2021-02-05 | 广东省农业科学院水稻研究所 | Application of OsGF14f protein in regulation and control of cold resistance of rice |
CN113637685B (en) * | 2021-08-26 | 2023-04-18 | 湖南农业大学 | Cold-resistant gene OsRab11C1 of rice and application thereof |
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CN101037696A (en) * | 2006-03-16 | 2007-09-19 | 华中农业大学 | Paddy cool injury gene and application |
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CN101037696A (en) * | 2006-03-16 | 2007-09-19 | 华中农业大学 | Paddy cool injury gene and application |
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Title |
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Genome-wide Association Mapping of Cold Tolerance Genes at the Seedling Stage in Rice;Dan Wang等;《Rice》;20161115;第9卷;第1-10页 * |
登录号:XM_015772737;佚名;《GenBank》;20160301;第239-886位 * |
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