CN109280073A - Nannocystins derivative and application thereof - Google Patents

Nannocystins derivative and application thereof Download PDF

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Publication number
CN109280073A
CN109280073A CN201710592493.6A CN201710592493A CN109280073A CN 109280073 A CN109280073 A CN 109280073A CN 201710592493 A CN201710592493 A CN 201710592493A CN 109280073 A CN109280073 A CN 109280073A
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nannocystin
compound
cancer
drug
derivative
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CN201710592493.6A
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Inventor
陈悦
张炜程
杨占涛
许晓龙
田云峰
张雪梅
白宴菊
唐杨
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Xinyi Suntech Pharmaceutical Co.,Ltd.
Nankai University
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Accendatech Co Ltd
Nankai University
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Priority to CN201710592493.6A priority Critical patent/CN109280073A/en
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    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K5/00Peptides containing up to four amino acids in a fully defined sequence; Derivatives thereof
    • C07K5/04Peptides containing up to four amino acids in a fully defined sequence; Derivatives thereof containing only normal peptide links
    • C07K5/08Tripeptides
    • C07K5/0802Tripeptides with the first amino acid being neutral
    • C07K5/0804Tripeptides with the first amino acid being neutral and aliphatic
    • C07K5/0808Tripeptides with the first amino acid being neutral and aliphatic the side chain containing 2 to 4 carbon atoms, e.g. Val, Ile, Leu
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K38/00Medicinal preparations containing peptides

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  • Chemical & Material Sciences (AREA)
  • Organic Chemistry (AREA)
  • Health & Medical Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Biochemistry (AREA)
  • Biophysics (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Medicinal Chemistry (AREA)
  • Molecular Biology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Medicines That Contain Protein Lipid Enzymes And Other Medicines (AREA)

Abstract

The present invention provides 1 structure Nannocystins derivative of formula and application thereof, discovery is different from natural products with the binding protein EF-1 α binding site for carrying out molecular docking, the purposes in preparation treating cancer drug or the ancillary drug for the treatment of cancer.

Description

Nannocystins derivative and application thereof
Technical field
The present invention relates to Nannocystins derivatives, and in preparation treating cancer drug or the adjuvant for the treatment of cancer Purposes in object, belongs to field of medicinal chemistry.
Background technique
It is the important source for finding new drug and its lead compound by the secondary metabolites that microorganism generates.It glues in recent years thin Bacterium (myxobacteria) receives more and more attention as important drug induccd microorganism.Recently respectively by Br nstrup It successively publishes an article with two dependent research groups of Hoepfner leader, reports two differences from slime bacteria Nannocyctis The compound nannocystin with novel structure is had found in the fermentation culture of bacterial strain ST201196 and MB1016 A.The molecule is 21 yuan of macrocyclic structures, and skeleton is by polyketone and two segments of tripeptides are end to end forms, and contains 9 chiralitys in total The trans olefins double bond at center and two conjugation.α in the molecule, beta epoxide amide are that nannocystin class compound is exclusive, Summary of the invention not yet is found in other known natural products so far.
Br nstrup etc. tests Nannocystin A for the inhibitory effect of 14 kinds of cancerous cell lines, finds it with very high Anticancer activity, IC50It is worth up to lower nanomolar concentration range.Especially the molecule is for common human breast cancer cell MDA- MB231 and drug resistance breast cancer cell MDA-A1 show good inhibitory effect, IC50Value is respectively 6.5 nM and 12 nM;Phase Than under, inhibitory effect (IC of the paclitaxel kind anti-cancer drugs docetaxel (docetaxel) for drug resistant cancer cells MDA-A150 = 570 nM) and MDA-MB231(IC50 =0.3 nM) it is many compared to then decline.Which show Nannocystin A as guide Important value of the compound in Development of Novel anticancer drug.Other having now been found that have the work of " polyketone-tripeptides " structure Property macrocyclic natural products include chondramide, jasplakinolide, seragamide, miuraenamide etc..It grinds Study carefully and shows that the action target of these molecules is actin.It is interesting that Br nstrup etc. has found Nannocystin A energy In the early evoking apoptosis of cell cycle, this is completely different with the mechanism of action of above compound.
Summary of the invention
The present invention provides the compound of such as 1 structure of following formula,
Wherein, R1=R2=Cl or R1=Br, R2=H。
Compound structure are as follows:
The protein-bonded combination of compound 1a, 1b and EF-1 α.Docking is the result shows that all contain dimethyl group compound Dimethyl part all be located at amino acid residue Ala397In neighbouring hydrophobic cavity, but there is hydroxyvaline residue day The combination of right product Nannocystin A and Nannocystin 6 is but different from hydroxy derivatives 1a and 1b. The hydroxyl of Nannocystin A and Nannocystin 6 can be with amino acid residue Arg379The hydrogen bond that distance is 2.61 is formed, However in 1a and 1b with Arg379Form hydrogen bond is its phenolic hydroxyl group part.
Purposes of the compound as described above in preparation treating cancer drug or the ancillary drug for the treatment of cancer, wherein cancer For colon cancer.
Detailed description of the invention
The structure of Fig. 1 Nannocystin A and Nannocystin 6
Fig. 2 compound N annocystin A, 6 Nannocystin and 1a, 1b molecular docking result
Specific embodiment
Embodiment 1: Nannocystin derivative 1a(R has been synthesized1=R2=Cl)
The related data of compound 1a: [α]D 27 = - 16.8 (c 0.45, CHCl3); IR (KBr) νmax:3835, 3612, 3291, 2963, 2926, 2855, 1736, 1688, 1664, 1495, 1461, 1262, 1094, 1023, 801 cm-1; 1H NMR (400 MHz, DMSO) δ 9.81 (s, 1H), 8.55 (d, J = 9.7 Hz, 1H), 7.97 (d, J = 9.5 Hz, 1H), 7.43 – 7.26 (m, 7H), 6.43 – 6.33 (m, 1H), 6.16 – 6.06 (m, 3H), 4.75 – 4.64 (m, 2H), 4.47 (d, J = 11.3 Hz, 1H), 3.59 (d, J = 10.5 Hz, 1H), 3.07 (s, 3H), 2.97 (s, 3H), 2.80 (d, J = 12.6 Hz, 1H), 2.69 (br, 1H), 2.63 – 2.53 (m, 2H), 2.32 (br, 1H), 2.12 (t, J = 12.5 Hz, 1H), 1.79 – 1.70 (m, 1H), 1.68 (s, 3H), 1.42 (s, 4H), 1.21 (br, 1H), 0.96 (d, J = 6.0 Hz, 3H), 0.89 (s, 1H), 0.85 (d, J = 6.0 Hz, 3H), 0.78 (d, J = 6.4 Hz, 3H), 0.72 (d, J = 6.3 Hz, 3H), 0.39 (d, J = 5.6 Hz, 3H); 13C NMR (100 MHz, DMSO) δ 171.0, 170.9, 169.3, 168.6, 147.3, 139.6, 137.7, 133.5, 130.9, 129.7, 129.3, 128.3, 127.5, 125.4, 125.0, 121.6, 84.1, 77.2, 61.4, 59.2, 58.0, 55.1, 52.9, 41.6, 37.5, 31.0, 30.9, 30.7, 29.7, 24.3, 19.3, 16.5, 14.9, 14.6, 10.6, 10.1, 9.4; HRMS–MALDI (m/z): [M+Na]+ calcd for C42H55Cl2N3O8Na+, 822.3258; found: 822.3263.
Embodiment 2: Nannocystin derivative 1b (R has been synthesized1=Br, R2=H)
The related data of compound 1b: [α]D 26 = - 36.02 (c 0.1, CHCl3);IR (KBr) νmax: 3337, 2963, 1741, 1663, 1498, 1414, 1261, 1096, 1021, 800cm-1;1H NMR (400 MHz, DMSO) δ 9.89 (s, 1H), 8.56 (d, J = 9.6 Hz, 1H), 7.89 (d, J = 9.1 Hz, 1H), 7.46 (s, 1H), 7.36 (dt, J = 17.4, 8.0 Hz, 5H), 7.10 (d, J = 8.1 Hz, 1H), 6.75 (d, J = 8.3 Hz, 1H), 6.43 – 6.33 (m, 1H), 6.11 (dd, J = 16.5, 11.5 Hz, 3H), 4.78 – 4.63 (m, 2H), 4.47 (d, J = 11.1 Hz, 1H), 3.61 (d, J = 10.1 Hz, 1H), 3.08 (s, 3H), 2.97 (s, 3H), 2.82 (d, J = 12.5 Hz, 1H), 2.70 (s, 1H), 2.63 (d, J = 10.3 Hz, 1H), 2.56 (d, J = 12.3 Hz, 1H), 2.32 (s, 1H), 2.12 (t, J = 12.3 Hz, 1H), 1.75 (d, J = 28.0 Hz, 1H), 1.69 (s, 3H), 1.41 (d, J = 17.0 Hz, 4H), 1.24 (s, 1H), 0.97 (d, J = 6.2 Hz, 3H), 0.85 (d, J = 6.4 Hz, 4H), 0.78 (t, J = 7.1 Hz, 3H), 0.73 (d, J = 6.4 Hz, 3H), 0.39 (d, J = 6.0 Hz, 3H); 13C NMR (100 MHz, DMSO) δ 171.2, 170.9, 169.4, 168.6, 152.3, 139.6, 137.6, 133.6, 133.4, 129.9, 129.1, 128.3, 127.4, 125.5, 125.1, 115.6, 108.7, 84.03, 77.2, 61.3, 59.2, 58.0, 55.2, 55.1, 52.9, 41.6, 37.7, 31.0, 30.9, 30.7, 29.7, 24.2, 19.2, 16.6, 14.9, 14.8, 10.6, 10.1, 9.5; HRMS–MALDI (m/z): [M+Na]+ calcd for C42H56BrN3O8Na+, 832.3143; found:832.3148.
Embodiment 3: molecular docking simulation calculates
In order to probe into the binding pattern of Nannocystin series compound, we tie derivative 1a, 1b and EF-1 α of synthesis Hop protein carries out docking simulation.It just reports as in the previous, compound N annocystins can be with the surface cavities knot of EF-1 α It closes.Docking is the result shows that all dimethyl parts containing dimethyl group compound are all to be located at amino acid residue Ala397It is attached In close hydrophobic cavity, but there is hydroxyvaline residue natural products Nannocystin A and Nannocystin 6(knot Structure is shown in attached drawing 1) combination be but different from hydroxy derivatives 1a and 1b.Nannocystin A's and Nannocystin 6 Hydroxyl can be with amino acid residue Arg379Formed distance be 2.61 hydrogen bond, however in 1a and 1b with Arg379Form hydrogen bond Be its phenolic hydroxyl group part (see attached drawing 2).These docking results and our life measured data are identical.
Embodiment 4:Nannocystin derivative 1a, 1b pharmacological action
The culture of HCT-116 cell strain is in the DMEM culture medium containing 10% fetal calf serum, at 37 degree, the incubator of 5% carbon dioxide Middle growth.Logarithmic phase cell kind is on the impermeable tabula rasa in 96 holes, every 100 uL fresh culture of hole, overnight growth.A series of chemical combination Final concentration 100-0.005nM in cell hole is added after object dilution.96 orifice plates take out from incubator after 72 hours, and equilibrium at room temperature 30 divides Clock.100 uLCGLK(PROMEGA are added in every hole) reagent, and shaken 2 minutes in constant-temperature table, after room temperature 10 minutes are incubated for, use Microplate reader measures fluorescence signal, and data are statisticallyd analyze with GraphPad 5.Compound 1a, 1b has HCT-116 good as the result is shown Good inhibitory activity, IC50Respectively 7.0 ± 4.8 nM and 3.3 ± 0.5 nM.

Claims (4)

1. it is related to the compound such as 1 structure of following formula,
Wherein, R1=R2=Cl or R1=Br, R2=H。
2. according to claim 1, compound structure are as follows:
3. the new combination of compound 1a, 1b and EF-1 α binding protein is docked the result shows that all contain dimethyl group The dimethyl part for closing object is all to be located at amino acid residue Ala397In neighbouring hydrophobic cavity, but have hydroxyvaline residual The combination of base natural products Nannocystin A and Nannocystin 6 is but different from hydroxy derivatives 1a and 1b, The hydroxyl of Nannocystin A and Nannocystin 6 can be with amino acid residue Arg379The hydrogen bond that distance is 2.61 is formed, However in 1a and 1b with Arg379Form hydrogen bond is its phenolic hydroxyl group part.
4. use of the compound described in claim 1 and 2 in preparation treating cancer drug or the ancillary drug for the treatment of cancer On the way, wherein cancer is colon cancer.
CN201710592493.6A 2017-07-19 2017-07-19 Nannocystins derivative and application thereof Pending CN109280073A (en)

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Cited By (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN109796468A (en) * 2019-03-26 2019-05-24 南开大学 Big ring nannocystin derivative, and its preparation method and application
CN112321677A (en) * 2020-10-23 2021-02-05 北京大学深圳研究生院 Nannocystin A analogue and preparation method and application thereof

Citations (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN101687884A (en) * 2007-07-04 2010-03-31 塞诺菲-安万特股份有限公司 macrolactone derivatives
WO2010069850A1 (en) * 2008-12-17 2010-06-24 Sanofi-Aventis Macrolactone derivatives, method for the production thereof and use thereof for the treatment of cancer
CN106083997A (en) * 2016-07-05 2016-11-09 北京大学深圳研究生院 Nannocystin A and the synthesis of analog thereof

Patent Citations (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN101687884A (en) * 2007-07-04 2010-03-31 塞诺菲-安万特股份有限公司 macrolactone derivatives
WO2010069850A1 (en) * 2008-12-17 2010-06-24 Sanofi-Aventis Macrolactone derivatives, method for the production thereof and use thereof for the treatment of cancer
CN106083997A (en) * 2016-07-05 2016-11-09 北京大学深圳研究生院 Nannocystin A and the synthesis of analog thereof

Non-Patent Citations (3)

* Cited by examiner, † Cited by third party
Title
"Nannocystin A的全合成", 《有机化学》 *
HOLGER HOFFMANN等: "Discovery, Structure Elucidation, and Biological Characterization of Nannocystin A, a Macrocyclic Myxobacterial Metabolite with Potent Antiproliferative Properties", 《ANGEWANDTE CHEMIE, INTERNATIONAL EDITION》 *
PHILIPP KRASTEL等: "Nannocystin A:an Elongation Factor 1Inhibitor from Myxobacteria with Differential Anti-Cancer Properties", 《ANGEWANDTE CHEMIE, INTERNATIONAL EDITION》 *

Cited By (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN109796468A (en) * 2019-03-26 2019-05-24 南开大学 Big ring nannocystin derivative, and its preparation method and application
CN109796468B (en) * 2019-03-26 2021-08-31 南开大学 Macrocyclic nannocystin derivatives, preparation method and application thereof
CN112321677A (en) * 2020-10-23 2021-02-05 北京大学深圳研究生院 Nannocystin A analogue and preparation method and application thereof

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