CN109215742A - biological information visualization device and method - Google Patents
biological information visualization device and method Download PDFInfo
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- CN109215742A CN109215742A CN201811009033.7A CN201811009033A CN109215742A CN 109215742 A CN109215742 A CN 109215742A CN 201811009033 A CN201811009033 A CN 201811009033A CN 109215742 A CN109215742 A CN 109215742A
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Abstract
The invention discloses a kind of biological information visualization device and methods；Wherein, an at least task interface is provided the method includes a client and the data group of user's selection and the task items of pre-configuration are obtained by the task interface；One server receives the data group that the client obtains and task items and executes the analysis task to the data group according to the task items, and the server is generated according to the result of the analysis task and reported；The client provides a visualization interface and shows the report.The present invention is by providing simple and highly efficient front-end interface for user, for providing the path for quickly analyzing a large amount of initial data for ordinary user；Simultaneously, need matched computer process ability configuration in the server of rear end analysis process and analysis process of the reality to initial data, initial data is analyzed for ordinary user and provides light-weighted operation hardware and method, and path is provided by the conversion of data Layer to phenotype layer for a large amount of initial data.
Description
Technical field
The present invention relates to the technology analysis fields of sequencing data, in particular to a kind of biological information visualization device
And method.
Background technique
With the development of gene sequencing technology, the sequencing throughput of gene sequencing instrument is greatly improved, and sequencing cost is fast
Speed reduces.Low cost carries out sequencing to the DNA and/or RNA sequence of species and generates a large amount of sequencing datas, how to sequencing number
According to carry out interpret have become data Layer to phenotype layer critical issue.
Summary of the invention
The embodiment of the present invention at least provides a kind of biological information method for visualizing, can be user to the data of initial data
Analysis provides light weight and visual data analysing method.The specific implementation of above-described embodiment, as described below.
The described method includes:
One client provides an at least task interface and by the data group of task interface acquisition user's selection and in advance
The task items of configuration；
One server receives the data group that the client obtains and task items and is executed according to the task items to described
The analysis task of data group, the server are generated according to the result of the analysis task and are reported；
The client provides a visualization interface and shows the report.
Preferably, the client establishes the identity authority of user and provides described appoint according to the identity authority of identification
Business interface.
Preferably, the identity authority that the client establishes user is configured that
So client provides a login and/or register interface, the login and/or register interface obtain what user keyed in
Identity information establishes the user right according to the identity information.
Preferably, the source of the data group is to call to be located at the pre-stored local data of the server or user's reality
The current data of Shi Shangchuan.
Preferably, the task items are corresponding is deployed with the analysis task of operation flow in the server in advance.
Preferably, the data group includes the initial data and several groups with reference to genome sequence；
The operation flow of the task items correspondence analysis task is to refer to base with arbitrarily described to the initial data respectively
Because group sequence carries out variance analysis.
The embodiment of the present invention separately discloses a kind of biological information visualization device, and described device includes client and server；
The client provides an at least task interface, and the task interface obtains the data group and pre-configuration of user's selection
Task items, the data group include at least indicate biological information initial data；
The server executes the analysis task to the data group according to the task items and generates for the client
The report of visual presentation.
Preferably, the server includes memory module and execution module；
The memory module stores the data group called for user；
The execution module is according to task items execution to the analysis task of the data group and according to analysis task
As a result the report is generated.
The embodiment of the present invention separately discloses a kind of biological information visualization device, described device include server and with the clothes
An at least client for business device communication；
Any client provides an at least task interface, and the task interface obtains the data group of user's selection and pre-
The task items of configuration, the data group include at least the initial data for indicating biological information；
The server executes the analysis task to the data group according to the task items and generates for the client
The report of visual presentation.
Preferably, any client provides a login and/or register interface, the client pass through the login
And/or register interface obtains the identity information of user's key entry and establishes user right, the client according to the identity information
The user right of connection setup is to any other client；
The task interface is provided after the user right of any client identification user.
For above scheme, the present invention is by being referring to the drawings described in detail disclosed exemplary embodiment, also
The other feature and its advantage for making the embodiment of the present invention understand.
Detailed description of the invention
In order to illustrate the technical solution of the embodiments of the present invention more clearly, below will be to needed in the embodiment attached
Figure is briefly described, it should be understood that the following drawings illustrates only certain embodiments of the present invention, therefore is not construed as pair
The restriction of range for those of ordinary skill in the art without creative efforts, can also be according to this
A little attached drawings obtain other relevant attached drawings.
Fig. 1 is the flow chart of the present embodiment method；
Fig. 2 is the structure chart of the present embodiment device.
Specific embodiment
In order to make the object, technical scheme and advantages of the embodiment of the invention clearer, below in conjunction with the embodiment of the present invention
In attached drawing, technical scheme in the embodiment of the invention is clearly and completely described, it is clear that described embodiment is
A part of the embodiment of the present invention, instead of all the embodiments.The present invention being usually described and illustrated herein in the accompanying drawings is implemented
The component of example can be arranged and be designed with a variety of different configurations.
Therefore, the detailed description of the embodiment of the present invention provided in the accompanying drawings is not intended to limit below claimed
The scope of the present invention, but be merely representative of selected embodiment of the invention.Based on the embodiments of the present invention, this field is common
Technical staff's every other embodiment obtained without creative efforts belongs to the model that the present invention protects
It encloses.
Referring to FIG. 1, the present embodiment provides a kind of biological information method for visualizing, comprising:
Step110, the user that initial data is analysed by back-up subject to a client provide a register interface, and user is registering
Client is according to identity information registration user account after identity information is keyed at interface；
Step120, pass through administrator or the first prewired user account distributing user permission for being set to registration；
Step130, client provide a login interface simultaneously, obtain the user account that user logs in and in identification user's account
For user visual data analysis service is provided after number there is user right.
Step210, client data analysis service include provide a task interface, create processing task for user.
Step220, the data group including initial data to be analyzed is selected in task interface for users；
Step230, at least one task items for carrying out different type analysis to data group in the selection of task interface for users；
Step230, the data group that user's selection is obtained by task interface and task items generation operating file are simultaneously transmitted to
One is located at the server of rear end to execute processing task.
Certainly, the present embodiment provides all task items of selection in task interface, and deployment is realized in advance in the server
The corresponding specific operation flow of analysis task, specific operation flow include but is not limited to the needs such as data statistics, operation and analysis
By the implementation steps of a large amount of computer processing performances.
In addition, user-selected number can be the local data for calling and being stored in advance in the server according to group in the present embodiment,
It is also possible to the current data uploaded in real time by user by the data window that task interface provides.
For example, the present embodiment demonstration for user to have ginseng transcript profile carry out variance analysis；So, user is in task
Data group in the server is stored in advance in selection in interface；Meanwhile data group includes initial data and several groups with reference to gene
Group sequence and version；Meanwhile the corresponding analysis task of task items is that initial data is successively referred to genome sequence with all respectively
Column and version carry out comparison in difference.
Step310, server obtain pending task items according to operating file after receiving the operating file in Step200
And data group, while the analysis task to data group is executed according to task items.
Step320, server, which generate analysis report and returned after analysis task, provides the client of operating file；
Offer one is reported visual for exhibiting pictures or visual form after the report that Step330, client reception return
Change interface.
Through the above scheme, the present embodiment is by providing simple and efficient front-end interface for user, for using to be common
Family provides the path for quickly analyzing a large amount of initial data；Meanwhile analysis process and analysis process of the reality to initial data being needed
Matched computer process ability configuration analyzes initial data for ordinary user and provides light-weighted behaviour in the server of rear end
Make hardware and method, path is provided by the conversion of data Layer to phenotype layer for a large amount of initial data.
Referring to FIG. 2, the present embodiment separately discloses a kind of biological information visualization device, including several clients and with it is all
The server that client communicates respectively.
Any client is provided which that login interface and register interface, client are successively complete by login interface and registration meeting
At the registering and logging of user account, while client is user account distributing user permission.Establish the client of user account
User account and the user right of distribution are synchronized to other indirectly directly or by server as registration associated user's account
Client；
Any client of the present embodiment can carry out data analysis for the user with user account, with specifically client
It holds and identifies the user right of user to provide task interface after user keys in user account.Task interface obtains user's selection
Such as the present embodiment current data above-mentioned or local data and task items.
Server includes memory module and execution module；Memory module stores the local data called for user；Execute mould
Root tuber executes the analysis task to data group according to task items and the result according to analysis task generates report.
These are only the preferred embodiment of the present invention, is not intended to restrict the invention, for those skilled in the art
For member, the invention may be variously modified and varied.All within the spirits and principles of the present invention, it is made it is any modification,
Equivalent replacement, improvement etc., should all be included in the protection scope of the present invention.
Claims (10)
1. a kind of biological information method for visualizing, which is characterized in that the described method includes:
One client provides an at least task interface and obtains the data group and pre-configuration of user's selection by the task interface
Task items；
One server receives the data group that the client obtains and task items and is executed according to the task items to the data
The analysis task of group, the server are generated according to the result of the analysis task and are reported；
The client provides a visualization interface and shows the report.
2. as claim 1 biological information method for visualizing, which is characterized in that
The client establishes the identity authority of user and provides the task interface according to the identity authority of identification.
3. biological information method for visualizing as claimed in claim 2, which is characterized in that the client establishes the identity of user
Authority configuration are as follows:
So client provides a login and/or register interface, the login and/or register interface obtain the identity that user keys in
Information establishes the user right according to the identity information.
4. biological information method for visualizing as described in claim 1, which is characterized in that
The source of the data group is to call to work as positioned at what the pre-stored local data of the server or user uploaded in real time
Preceding data.
5. biological information method for visualizing as described in claim 1, which is characterized in that
The task items are corresponding to be deployed with the analysis task of operation flow in the server in advance.
6. biological information method for visualizing as claimed in claim 5, which is characterized in that
The data group includes the initial data and several groups with reference to genome sequence；
The operation flow of the task items correspondence analysis task is to refer to genome with arbitrarily described to the initial data respectively
Sequence carries out variance analysis.
7. a kind of biological information visualization device, which is characterized in that described device includes client and server；
The client provides an at least task interface, and the task interface obtains the data group of user's selection and appointing for pre-configuration
Business item, the data group include at least the initial data for indicating biological information；
The server executes the analysis task to the data group according to the task items and generates for the client visible
Change the report shown.
8. biological information visualization device as claimed in claim 7, which is characterized in that the server include memory module and
Execution module；
The memory module stores the data group called for user；
The execution module executes the analysis task to the data group and the result according to analysis task according to the task items
Generate the report.
9. a kind of biological information visualization device, which is characterized in that described device include server and with the server communication
An at least client；
Any client provides an at least task interface, and the task interface obtains the data group and pre-configuration of user's selection
Task items, the data group include at least indicate biological information initial data；
The server executes the analysis task to the data group according to the task items and generates for the client visible
Change the report shown.
10. biological information visualization device as claimed in claim 9, which is characterized in that
Any client provides a login and/or register interface, the client pass through the login and/or register interface
It obtains the identity information that user keys in and user right is established according to the identity information, the client communication is established described
User right is to any other client；
The task interface is provided after the user right of any client identification user.
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| CN201811009033.7A CN109215742A (en) | 2018-08-30 | 2018-08-30 | biological information visualization device and method |
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| CN107391963A (en) * | 2017-07-21 | 2017-11-24 | 上海桑格信息技术有限公司 | Eucaryon based on calculating cloud platform is without ginseng transcript profile interaction analysis system and method |
| CN107657150A (en) * | 2017-09-07 | 2018-02-02 | 北京荣之联科技股份有限公司 | One kind visualization analysis of biological information instrument generation method and device |
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Patent Citations (6)
| Publication number | Priority date | Publication date | Assignee | Title |
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| CN101976394A (en) * | 2010-10-29 | 2011-02-16 | 无锡永中软件有限公司 | Data acquiring and counting system and method |
| CN105095623A (en) * | 2014-05-13 | 2015-11-25 | 中国人民解放军总医院 | Disease biomarker screening analysis method, disease biomarker screening analysis platform, server and disease biomarker screening analysis system |
| US20170327904A1 (en) * | 2016-05-11 | 2017-11-16 | Santa Clara University | Identification of Microorganisms from genome sequencing data |
| CN107368704A (en) * | 2017-07-21 | 2017-11-21 | 上海桑格信息技术有限公司 | The interactive analysis system and method for the transcriptome project for having reference gene group based on cloud computing platform |
| CN107391963A (en) * | 2017-07-21 | 2017-11-24 | 上海桑格信息技术有限公司 | Eucaryon based on calculating cloud platform is without ginseng transcript profile interaction analysis system and method |
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Application publication date: 20190115 |