CN108823300A - Application of the circRNA on the product of preparation diagnosis osteoarthritis - Google Patents
Application of the circRNA on the product of preparation diagnosis osteoarthritis Download PDFInfo
- Publication number
- CN108823300A CN108823300A CN201810637203.XA CN201810637203A CN108823300A CN 108823300 A CN108823300 A CN 108823300A CN 201810637203 A CN201810637203 A CN 201810637203A CN 108823300 A CN108823300 A CN 108823300A
- Authority
- CN
- China
- Prior art keywords
- circ
- hsa
- osteoarthritis
- application
- seq
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Granted
Links
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6883—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/158—Expression markers
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/178—Oligonucleotides characterized by their use miRNA, siRNA or ncRNA
Landscapes
- Chemical & Material Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Health & Medical Sciences (AREA)
- Organic Chemistry (AREA)
- Wood Science & Technology (AREA)
- Analytical Chemistry (AREA)
- Zoology (AREA)
- Genetics & Genomics (AREA)
- Engineering & Computer Science (AREA)
- Pathology (AREA)
- Immunology (AREA)
- Microbiology (AREA)
- Molecular Biology (AREA)
- Biotechnology (AREA)
- Biophysics (AREA)
- Physics & Mathematics (AREA)
- Biochemistry (AREA)
- Bioinformatics & Cheminformatics (AREA)
- General Engineering & Computer Science (AREA)
- General Health & Medical Sciences (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
Abstract
The invention discloses provide hsa_circ_0045714 and/or hsa_circ_0005567 as molecular marked compound preparation diagnosis or treatment osteoarthritis product on application, and further confirm hsa_circ_0045714 and hsa_circ_0005567 in osteoarthritic tissue expression up-regulation.The present invention further discloses the diagnostic kits that hsa_circ_0045714 and/or hsa_circ_0005567 are used to prepare detection osteoarthritis, and the kit includes the primer and specification of specific amplification osteoarthritis correlation circRNA.It can not only quickly and effectively accomplish early detection using hsa_circ_0045714 and/or hsa_circ_0005567 detection osteoarthritis, and provide therapy target and important evidence for clinical applications such as gene therapy, drug therapies.
Description
Technical field
The present invention relates to biomedicine fields, and in particular to hsa_circ_0045714 and/or hsa_circ_0005567
Application on the product of preparation diagnosis or treatment osteoarthritis.
Background technique
Osteoarthritis (osteoarthritis, OA) is the chronic disease that articular cartilage is gradually degenerated at any time, the pass
Section cartilage is covered on bone end, forms the articular surface in joint.It is reported that there are many factors, and patient to be made to be susceptible to suffer from osteoarthritis, including lose
Pass neurological susceptibility, obesity, accident or athletic injury, operation, drug and weight body demand force.Osteoarthritis is considered soft from joint
What the damage of bone started.Most common two kinds are sports-related injury and long-term " Reusability " joint damage to the damage in joint
Wound.The joint most frequently influenced by osteoarthritis is knee, hip and hand.In most cases, due to knee and the necessary load-bearing function of hip
Can, the osteoarthritis in these joints more easily leads to deformity than Hand osteoarthritis.With the development of cartilage degradation, in joint and close
Secondary variation occurs in its hetero-organization (including bone, muscle, ligament, meniscus and synovial membrane) around saving.Cartilaginous tissue primary declines
Exhausting with the net effect of its hetero-organization secondary damage is that pain, swelling, weakness and diseased joints forfeiture function occur for patient.These diseases
Shape is often developed to the degree seriously affected, is such as made patient disability or is influenced quality of life.
Articular cartilage is mainly made of cartilage cell, II Collagen Type VI, proteoglycans and water.Articular cartilage does not have blood or nerve
Distribution, cartilage cell is only cell type in the tissue.The appearance of cartilage cell's responsibility system at cartilage matrix II Collagen Type VI
And proteoglycans.Thereafter the matrix has the physicochemical characteristics for allowing to be made with water matrix to be saturated again.This structure-function relationship
Net effect be that articular cartilage has special wear resistance characteristics, and it is mobile that almost friction free occurs between articular cartilage face.
When being not suffering from osteoarthritis, articular cartilage often provides lifelong painless load-bearing and unlimited under the even physical qualification of high demand
The joint of system is mobile.
As all living tissues, articular cartilage constantly undergoes renewal process, wherein removal (catabolic activity) "
" cell and matrix components simultaneously generate (anabolic activity) " newly " cell and molecule always.It is organized relative to majority, articular cartilage
Anabolism or catabolism turnover rate are lower.The long-term maintenance of mature cartilage structure integrality is synthesized and is degraded dependent on matrix
Between balance appropriate.Cartilage cell is by response in chemistry and mechanical irritation maintenance matrix equilibrium in its environment.It is soft
It is necessary to cartilage dynamic equilibrium that osteocyte, which irritates suitable and effective response to these,.By anabolic activity it is insufficient or
Catabolic activity surplus destroy dynamic equilibrium can cause cartilage degradation and osteoarthritis (Adams etc., 1995,
Nature377Suppl:3-174).Majority, which is damaged, can start the synthesis of enhancing with the tissue of catabolic activity raising
It is metabolized response, tissue is allowed to restore.Unfortunately, articular cartilage response is damaged or is consumed in cartilage matrix and raises it and synthesize generation
The ability for thanking activity and raising synthetic proteins glycan and II Collagen Type VI is very limited.
Existing osteoarthritis treatment method include movement, drug, rest and joint care, operation, pain relief techniques,
Replacement therapy and body weight control.Treating common drug in osteoarthritis includes nonsteroidal anti-inflammatory such as aspirin, brufen
Deng;It is directly used in the topical pain-relieving creams, rubber and spray etc. of skin.It can be performed the operation so that bone surface reconstruction, bone
Reset and replacement joint.Although oneself be used to treat disease for various medicinal treatments, they are nothings to long-term control and prevention
Effect.Further, since osteoarthritis hidden occur and develop slowly, therefore osteoarthritis often disease develop advanced stage
It is just identified, rather than potential treatment may more effective early in disease development.Therefore prevention, change or treatment osteoarthritis
Further development in lysis depends critically upon the early diagnosis marker of identification disease, so that early stage be allowed to interfere.
Summary of the invention
The purpose of the present invention is to provide a kind of application of new marker on the product for diagnosing or treating osteoarthritis.
To achieve the above object, the present invention provides hsa_circ_0045714 and/or hsa_circ_0005567 conducts
Application of the molecular marked compound on the product of preparation diagnosis or treatment osteoarthritis.
Further, the hsa_circ_0045714 and hsa_circ_0005567 is in osteoarthritis biological sample
Expression up-regulation.
Still further, the marker includes such as SEQ ID NO:1 and SEQ ID NO:Nucleotide sequence shown in 2.
Preferably, the product be being capable of quantitative detection hsa_circ_0045714 and/or hsa_circ_0005567 table
Up to the product of amount.
More preferably, the product is osteoarthritis diagnostic kit.
Further, the kit include the relevant hsa_circ_0045714 of specific amplification osteoarthritis and/or
The primer and specification of hsa_circ_0005567.
Still further, the primer sequence of the hsa_circ_0045714 such as SEQ ID NO:3 and SEQ ID NO:4 institutes
Show;The primer sequence of the hsa_circ_0005567 such as SEQ ID NO:5 and SEQ ID NO:Shown in 6.
Further, the primer is suitable for the inspection of SYBR Green, TaqMan probe and/or molecular hybridization probe
It surveys.
Also further, the kit further includes 10 × Buffer, dNTP, Mg2+, Taq enzyme and fluorescent dye.
Beneficial effects of the present invention are as follows:
Present invention firstly discloses hsa_circ_0045714 and hsa_circ_0005567 are related to osteoarthritis, go forward side by side
One step confirms that hsa_circ_0045714 and hsa_circ_0005567 express up-regulation in osteoarthritic tissue, more than utilization
CircRNA detects osteoarthritis, can not only quickly and effectively accomplish early detection, is also gene therapy, drug therapy etc. is faced
Bed application provides therapy target and important evidence.
Detailed description of the invention
Fig. 1 hsa_circ_0045714 and hsa_circ_0005567 and its possible target gene are in osteoarthritic tissue sample
Expression in this.
Specific embodiment
The following examples are used to illustrate the present invention, but are not intended to limit the scope of the present invention..Unless otherwise specified, embodiment
Used in the conventional means that are well known to those skilled in the art of technological means.With reference to the accompanying drawings and examples to the present invention
It is described in detail.
Test method without specific conditions in embodiment, usually conventional method in that art, such as according to normal conditions
Such as Sambrook et al., molecular cloning, the condition in laboratory manual (third edition) (Science Press, 2002), or according to
Condition proposed by reagent manufacturing firm.
The present inventor carries out high-throughput transcript profile to OA patient's cartilaginous tissue sample and normal articular cartilage sample
Sequencing, by bioinformatics method carry out genescreen, pick out the apparent hsa_circ_0045714 of differential expression and
Hsa_circ_0005567, there is no hsa_circ_0045714 and hsa_circ_0005567 and osteoarthritis in existing research
Relevant report, further, inventor have carried out molecular biology method verifying, it was confirmed that hsa_circ_0045714 and hsa_
Circ_0005567 expresses up-regulation in osteoarthritic tissue.
Hsa_circ_0045714 and hsa_circ_0005567 of the invention is before making the present invention known
CircRNA can be retrieved (http by circBase://circbase.org), essential information is as follows:
Circbase ID:Hsa_circ_0045714 is located at No. 17 chromosome of the mankind, chr17:73808192-
73809959;Circbase ID:Hsa_circ_0005567 is located at No. 1 chromosome of the mankind, chr1:51868106-
51874004, derive from human genome.
The particular form of terms used herein " osteoarthritis " articulations digitorum manus inflammation, especially articular cartilage are gradually moved back at any time
The chronic disease of change, the articular cartilage covering re-form on the bone end of articular surface.
Terms used herein " expression up-regulation " refer to the sequence corresponding to expressed gene, wherein the measurement card of sequence amount
It is bright, it is determined in the individual for having identified morbid state different with osteoarthritis by stages from from normal individual or from by osteoarthritis
Same gene in isolated biological sample is compared, and the gene is from suffering from osteoarthritis or determined by osteoarthritis by stages
Osteoarthritis identified the expression in the biological sample separated in the individual of morbid state increase.According to the present invention,
" expression up-regulation " refer to intensity for hybridization measurement by the method for the invention at least 1%, 2%, 3%, 4%, 5%, 6%, 7%,
8%, 9%, 10% or higher expression increases, such as 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90% or more
It is high or be higher than 1 times, up to 2 times, 3 times, 4 times, 5 times, 10 times, 50 times, 100 times or higher.
Terms used herein " expression " refer to through the measurement of known to those skilled in the art and method described herein
Given nucleic acid or protein can measure.When being related to the corresponding circRNA of molecular marked compound of the present invention, expression can lead to
Hybridization or more is crossed to measure, such as includes green, TaqMan and quantitative real-time RT-PCR using SYBR.
1 high-flux sequence of embodiment screens difference expression gene
1, it samples
Take acquisition 19 (average ages 64.5 of cartilaginous tissue sample in BJ Union Hospital's orthopaedics osteoarthritis surgery
Year, the range of age 58-75 years old, 2 males, 17 women), all samples are confirmed through pathological examination, are diagnosed as knee joint bone
Arthritis;Normal articular cartilage is trauma surgery patient articular cartilage tissue from BJ Union Hospital's orthopaedics.The group of acquisition
- 80 DEG C of low temperature refrigerators of number postposition are woven in save.Clinical sample used in this research know to patient and informs and pass through
Ethics Committee of the court passes through.
2, Total RNAs extraction is carried out to tissue samples
UsingReagent (Invitrogen, Carlsbad, CA, USA) carries out sample rna extraction, experiment
Operation is carried out by product description, and concrete operations are as follows:
It freezes to be put into the mortar being pre-chilled tissue after liquid nitrogen, taking-up after collection sample and be ground, sample to be organized
This is at after powdered:
1. Trizol is added, room temperature preservation 5 minutes;
2. chlorination imitates 0.2mL, with forced oscillation centrifuge tube, mix well, places -10 minutes 5 minutes at room temperature;
3. drawing upper strata aqueous phase (inhaling 70%) after 12000rpm high speed centrifugation 15 minutes into another new centrifuge tube pipe, pay attention to
The protein substance that be not drawn between two layers of water phase.New pipe is moved into, the pre- cold isopropanol of isometric -20 DEG C is added, it is sufficiently reverse
It mixes, is placed in 10 minutes on ice;
4. 12000rpm high speed from 15 minutes after carefully discard supernatant, in 1mL/mL Trizol ratio be added 75%
DEPC ethanol washing precipitating (4 DEG C of preservations), washing precipitate, oscillation mixes, 12000rpm high speed centrifugation 5 minutes at 4 DEG C;
5. discarding ethanol liquid, 5 minutes are placed at room temperature sufficiently to dry precipitating, it is heavy that the processed water dissolution of DEPC is added
It forms sediment;
6. usingSpectrophotometer (IMPLEN, CA, USA) measures RNA purity and use RNA Assay Kit in 2.0Flurometer detection kit (Life Technologies,
CA, USA) concentration, it freezes in -80 DEG C.Pass throughThe extraction feelings of spectrophotometer detection RNA sample
Condition, the sample requirement of RNA-seq sequencing:OD260/OD280For 1.8-2.2.
RNA quality judging standard:The OD of RNA sample260/OD280Value is between 1.7-2.2;Total serum IgE electrophorogram has clearly
28S, 18S band;70 DEG C of water-baths keep the temperature 1 hour after electrophorogram and the map no significant difference before water-bath heat preservation.
RNA integrity assessment uses 2100 system of 6000 detection kit of RNA Nano and biological analyser
(Agilent Technologies,CA,USA).Normal group and each sample of osteoarthritis group are diluted to same concentration, by normal group
Sample and osteoarthritis group sample prepare building and sequencing for library respectively.
3, sequencing preparation and high-flux sequence
Each RNA sample inputs 3 μ g.First with Epicentre Ribo-zeroTMRRNA Removal kit
The total serum IgE that (Epicentre, USA) extracts upper step removes rRNA, then removes rRNA free residual object with ethanol precipitation.
It recycles UltraTMDirectional RNA Library Prep kit (NEB, USA) is according to explanation
Book prepares sequencing library, and index coding is added in the sequence of attributes of each sample.By sequencing library the first of NEBNext
Bivalent cation is utilized in chain synthesis reaction buffer (First Strand Synthesis Reaction Buffer, 5 ×)
Cracked under high temperature.The first chain is synthesized using random primer (random hexamer primer) and M-MuLV reverse transcriptase
cDNA.The second chain cDNA then is carried out with DNA polymerase i and RNase H to synthesize, and in reaction buffer, replaces dNTPS with dUTP
In dTTP.CDNA segment is converted into flat end with polymerase and exonuclease again.By DNA fragmentation 3 ' hold phosphorylation it
Afterwards, it is connect with the NEBNext Adaptor with hairpin structure in case hybridization.It is about 150~200bp's to select length
CDNA segment purifies library fragments with ApHealthXP system (Beckman Coulter, Beverly, USA).Then
Size selection is carried out with the USER Enzyme (NEB, USA) of 3 μ L, cDNA is connected at 37 DEG C and is carried out 15 minutes, then at 95 DEG C
It carries out 5 minutes.PCR is carried out using Phusion high-fidelity DNA polymerase.According to specification in cBot Cluster
Volume is indexed using TruSeq PE Cluster Kit v3-cBot-HS kit (Illumia) in Generation system
The cluster of code sample, then high-flux sequence is carried out by 4000 platform of Illumina Hiseq, Sequenced Reads is obtained,
Later with reference to related species reference sequences or genome, analysis of biological information is carried out.
4, detection data is analyzed
4.1 Reads mass controls
The data of the Fastq form obtained in upper step by Script Programming inside initial data, remove belt lacing first
Reads, the reads comprising poly N and low-quality reads obtain clean data.Meanwhile calculating clean data's
Q20, Q30 and G/C content.All subsequent analysis are all based on the clean data of high quality.
4.2 Reads, which are compared, refers to gene
Genome and gene group model comment file are directly downloaded from genome website.Pass through with reference to gene group index
Bowtie2v2.2.8 is constructed, and the clean reads of both-end by HISAT2v2.0.4.HISAT2 and refers to genome
Match.
The identification of 4.4 circRNA
Use find_circ (Sebastian Memczak et al., 2013) identification circRNA.The base of find_circ
Present principles are never to compare to the both ends of the reads of reference sequences the anchor sequence for respectively extracting 20-nt, by every a pair
Anchor sequence compares reference sequences again, if the end 5' of anchor sequence is compared to reference sequences (starting and termination site
It is denoted as A3, A4 respectively), while the end 3' of the anchor sequence compares to the upstream in this site and (originates and remember respectively with termination site
For A1, A2), and there are splice site (GT-AG) between A2 to the A3 of reference sequences, then using this read as candidate
circRNA.Finally the candidate circRNA using read count more than or equal to 2 is as the circRNA of identification.
The expression of 4.5 circRNA is analyzed
Carry out the statistics of expression quantity to known in each sample and new circRNA, and with TPM (Zhou et al., 2010) into
Row expression quantity normalized, obtains the readcount of sample.
4.6 circRNA Differential expression analysis results
The input data of circRNA differential expression is readcount data obtained in the analysis of circRNA expression.
For there is the duplicate sample of biology, analyze we using based on negative binomial distribution DESeq2 (Michael et al.,
2014) it is analyzed;Sample duplicate for abiology is first standardized readcount data using TMM,
Variance analysis is carried out with DEGseq (Wang et al., 2010) later.
The further analysis of 4.7 differential expression circRNA
In order to better understand the function of difference expression gene, we have carried out Gene to difference expression gene
Ontology (GO) analysis, signal path (KEGG) analysis and circRNA miRNA bindingsite assay (for animal and
Plant, respectively using the binding site of the miRNA of the circRNA after the shearing of miRanda and psRobot software prediction), and to difference
Different expressing gene carries out functional annotation, in view of above data analysis as a result, we have screened differential expression in conjunction with document
Hsa_circ_0045714 and hsa_circ_0005567 is used for the research of the application, cartilage of the above circRNA in OA patient
Up-regulation is expressed in tissue samples.
Cartilaginous tissue hsa_circ_0045714 and the hsa_circ_0005567 table of embodiment 2RT-PCR verifying OA patient
Up to situation
1, material
17 osteoarthritic cartilage tissues samples are derived from BJ Union Hospital's osteoarthritis surgery (average age 66 years old),
It is grouped and is numbered.All sample standard deviations confirm that control group is meniscus injury and ligamentaum cruciatum by pathological examination
Damage carries out the patient of arthrocsopic surgery treatment.- 80 DEG C of low temperature refrigerators of all sample number postpositions save.
2, expression analysis method
2.1 pairs of tissue samples carry out Total RNAs extraction, with the extracting method of embodiment 1.
2.2 reverse transcriptions synthesize cDNA
UsingIII Reverse Transcriptase (invitrogen, article No. 18080-044)
CDNA reverse transcription is carried out, experimental implementation is carried out by product description, and concrete operations are as follows:
Using Reverse Transcriptase kit, reverse transcription synthesis cDNA is carried out to l μ g total serum IgE with RT Buffer.Using 25 μ L
Reaction system, each sample take 1 μ g total serum IgE as template ribonucleic acid.- 20 DEG C are stored in after the cDNA sample of acquisition is diluted 10 times
Refrigerator is spare.
2.3Real-Time PCR
2.3.1 instrument and analysis method
With 7500 type fluorescence quantitative PCR instrument of ABI, using 2-ΔΔCtMethod carries out data relative quantitative assay.
2.3.2 design of primers
Using online primer-design software, gene order is referring to Circbase ID:Hsa_circ_0045714 and hsa_
Circ_0005567, interior participation in the election GAPDH are synthesized by invitrogen company after design of primers.Specific primer sequence is as follows:
1 primer sequence of table
Operating process is as follows:
2 Real Time reaction system of table
Component | Additional amount |
2×mix | 10μL |
Upstream primer (10 μM) | 0.5μL |
Downstream primer (10 μM) | 0.5μL |
Template | 2μL |
Sterile purified water is added | To 25 μ L |
Use PowerGreen PCR Master Mix (invitrogen, article No. 4367659) is respectively to mesh
Gene primer and reference gene primer expanded.Experimental implementation is carried out by product description.Amplification program is:95℃
5min, (95 DEG C of 15sec, 60 DEG C of 45sec, 72 DEG C of 35sec) × 40 circulations.Simultaneously in 60-95 DEG C of progress solubility curve analysis.
After reaction, the PCR product of 5 μ l is taken to carry out 2% agarose electrophoresis, with quick plastic recovery kit (invitrogen company)
The segment that size is 252bp and 147bp is subjected to gel extraction and is sequenced, as a result carries out homology analysis with blast software.
3, experimental result
Real-time quantitative PCR amplification curve inflection point understands that amplification curve entirety collimation is good, shows the amplification effect of each reaction tube
Rate is close, and baseline is put down without the phenomenon that raises up, and exponent phase slope is larger, illustrates that amplification efficiency is higher;Sample amplified production is molten
Solution curve be all it is unimodal, illustrate that amplified production only has one, be specific amplification;According to the relative quantification formula of qRT-PCR:2-ΔΔCt× 100%, compare hsa_circ_0045714 and hsa_circ_0005567 in osteoarthritic tissue and normal tissue
Expression, and the circRNA- of hsa_circ_0045714 and hsa_circ_0005567 are predicted by CircNET
MiRNA-mRNA acts on network, and the expression of corresponding target gene mRNA, prediction hsa_circ_0005567 are acted on
HEATR5B gene, hsa_circ_0045714 act on UNK gene.Result above demonstrates high-throughput transcript profile expression data
Confluence analysis hsa_circ_0045714 and hsa_circ_0005567 expressed in Human Osteoarthritis up-regulation as a result, point
It Shang Tiao not be about 128 times and 512 times of normal tissue, log2Fold_change=log2 (normal tissue sample/osteoarthritis
Tissue samples), concrete outcome is shown in Fig. 1;After RT-PCR product is recovered, it is sequenced on the full-automatic sequenator of ABI3730, it should
The nucleotide sequence of the segment of 252bp and 147bp is as shown in SEQ ID NO.1 and SEQ ID NO.2.With Vector NTI
10 software of advance (Invitrogen company) is whole by the sequence and hsa_circ_0045714 and hsa_circ_0005567
A circRNA sequence is compared, and comparison result is shown, such as SEQ ID NO:Nucleotides sequence shown in 1 is classified as hsa_circ_
A part of sequence of 0045714 gene, coincidence rate 100%, SEQ ID NO:Nucleotides sequence shown in 2 is classified as hsa_circ_
A part of sequence of 0005567 gene, coincidence rate 100%.
3 osteoarthritis diagnostic kit of embodiment
Based on the primer sets that embodiment 2 obtains, the kit of the present invention for osteoarthritis diagnosis is assembled, it is described
Kit includes that the primer sets of specific amplified hsa_circ_0045714 and hsa_circ_0005567 are as shown in table 1, specially:
1, kit includes specific amplification hsa_circ_0045714:SEQ ID NO.3 and SEQ ID NO.4;
2, kit includes specific amplification hsa_circ_0005567:SEQ ID NO.5 and SEQ ID NO.6;
3, kit includes specific amplification hsa_circ_0045714 and hsa_circ_0005567:SEQ ID NO.3,
SEQ ID NO.4 and SEQ ID NO.5, SEQ ID NO.6.
With the primer pair such as SEQ ID NO of specific amplified house-keeping gene (GAPDH):7 and SEQ ID NO:Shown in 8;Also wrap
SYBR Green polymerase chain reaction system is included, such as PCR buffer, SYBR Green fluorescent dye, dNTPs.The PCR is slow
The ingredient of fliud flushing is 25mM KCl, 2.5mM MgCl2, 200mM (NH4)2SO4;It further include bone articular cartilage normal tissue cDNA:
As negative control and the detection common quantitative PCR detection of sample cDNA, each reaction system use is identical as detection sample cDNA
Amount.
By the optimization to primer concentration and annealing temperature, determine that optimal reaction system is as shown in table 5:
5 PCR reaction system of table
Component | Additional amount |
SYBR Green polymerase chain reaction system | 12.5μL |
Upstream primer (10 μM) | 0.5μL |
Downstream primer (10 μM) | 0.5μL |
Template cDNA | 2.0μL |
Sterile purified water is added | To 25 μ L |
Optimum reaction condition is:
95 DEG C of initial denaturation 5min, (95 DEG C of denaturation 15sec, 60 DEG C of annealing 45sec, 72 DEG C of extension 35sec) × 40 circulations,
72 DEG C of extension 15min.
4 osteoarthritis diagnostic kit detection effect of embodiment
The a small amount of cartilaginous tissue cell for taking the medical patient of 30 osteoarthritis to be detected, comes from BJ Union Hospital's orthopaedics.
All clinical samples of this research know to patient and inform and pass through through this Hospital Ethical Committee.Use conventional side
Method (or using specific kit) extracts RNA from cartilaginous tissue cell, using seminal plasma fructose detection kit, according to optimum response body
System reacts with condition progress PCR, uses in kit normal articular cartilage cDNA as in Real-Time PCR quantitative detection
CDNA is compareed, detects the hsa_circ_0045714 and/or hsa_circ_0005567 of tissue samples with respect to normal articular cartilage
Expression quantity variation, analysis detection are examined as a result, comparing between sample and control using t, P<0.05 is significant difference, is judged to detection sample
This positive.
1, detection effect of the hsa_circ_0045714 as the kit of molecular marked compound
Testing result shows in 30 patients to be detected, have the hsa_circ_0045714 of 24 patients in Bones and joints
Scorching chondrocytes expressed level is 40-100 times in normal tissue, and in addition 6 expression quantity do not find differences.Through clinical further
Detection, it is as a result almost the same with kit test result prepared by the present invention.Infer accordingly, this diagnostic kit can specify area
Human Osteoarthritis is separated, and provides diagnostic clue as clinic.
2, detection effect of the hsa_circ_0005567 as the kit of molecular marked compound
Testing result shows in 30 patients to be detected, have the hsa_circ_0005567 of 22 patients in Bones and joints
Scorching chondrocytes expressed level is 150-300 times in normal tissue, and in addition 8 expression quantity do not find differences.Through clinic into one
Step detection, it is as a result almost the same with kit test result prepared by the present invention.Infer accordingly, this diagnostic kit can define
Human Osteoarthritis is distinguished, and provides diagnostic clue as clinic.
3, detection effect of the hsa_circ_0045714 and hsa_circ_0005567 as the kit of molecular marked compound
Testing result is shown, in 30 patients to be detected, there is the hsa_circ_0005567 and hsa_ of 26 patients
Circ_0005567 is at 50-250 times that osteoarthritis chondrocytes expression is in normal tissue, and in addition 4 expression quantity are not
It finds differences.It is as a result almost the same with kit test result prepared by the present invention through clinical further detection.Infer accordingly,
This diagnostic kit can clearly distinguish Human Osteoarthritis, and provide diagnostic clue as clinic.
Although above the present invention is described in detail with a general description of the specific embodiments,
On the basis of the present invention, it can be made some modifications or improvements, this will be apparent to those skilled in the art.Cause
This, these modifications or improvements, fall within the scope of the claimed invention without departing from theon the basis of the spirit of the present invention.
Sequence table
<110>Chinese Academy of Medical Sciences Beijing Union Medical College Hospital
<120>Application of the circRNA on the product of preparation diagnosis osteoarthritis
<130> P18023
<160> 8
<170> SIPOSequenceListing 1.0
<210> 1
<211> 252
<212> DNA
<213> Homo sapiens
<400> 1
ccgcgccctc cctataatcc tgctcatagc tgccctgggg atttggctca ccaccaccta 60
ctgcctgctc tagccgaggc cccgacctgg cccgcatccc accctacacc caccattcaa 120
aaggcgcctc taggggcgtt ttccctgaca catcatgttc ccaagatccc tccaggcttt 180
cacatgtgca caggcacgta cataagcgca catgcaaatg ttttccgccc tgcaagagtg 240
ccctttcacc ct 252
<210> 2
<211> 147
<212> DNA
<213> Homo sapiens
<400> 2
ggccagagca acctagagtc tgagcccata caccaggaat ctccagtgag tctaatactt 60
tcataacctt cataatcaac ctccttgtgc agatccaagt ttcactgaca ttatatctaa 120
tataaataca tggccttgcc tcatctg 147
<210> 3
<211> 19
<212> DNA
<213> Artificial sequence
<400> 3
ccgcgccctc cctataatc 19
<210> 4
<211> 20
<212> DNA
<213> Artificial sequence
<400> 4
agggtgaaag ggcactcttg 20
<210> 5
<211> 20
<212> DNA
<213> Artificial sequence
<400> 5
ggccagagca acctagagtc 20
<210> 6
<211> 21
<212> DNA
<213> Artificial sequence
<400> 6
cagatgaggc aaggccatgt a 21
<210> 7
<211> 21
<212> DNA
<213> Artificial sequence
<400> 7
ggagcgagat ccctccaaaa t 21
<210> 8
<211> 23
<212> DNA
<213> Artificial sequence
<400> 8
ggctgttgtc atacttctca tgg 23
Claims (10)
1.hsa_circ_0045714 and/or hsa_circ_0005567 is closed as molecular marked compound in preparation diagnosis or treatment bone
Save the application on scorching product.
2. application as described in claim 1, which is characterized in that the hsa_circ_0045714 and hsa_circ_0005567
The expression up-regulation in osteoarthritis biological sample.
3. application as claimed in claim 2, which is characterized in that the hsa_circ_0045714 acts on UNK gene, described
UNK down regulation of gene expression described in timing, the hsa_circ_0005567 are acted in hsa_circ_0045714 expression
HEATR5B gene, HEATR5B gene expression described in timing is also raised in the hsa_circ_0005567 expression.
4. application as described in claim 1, which is characterized in that the marker includes such as SEQ ID NO:1 and SEQ ID
NO:Nucleotide sequence shown in 2.
5. application as described in claim 1, which is characterized in that the product is osteoarthritis diagnostic kit.
6. application as claimed in claim 5, which is characterized in that the kit includes that specific amplification osteoarthritis is relevant
The primer and specification of hsa_circ_0045714 and/or hsa_circ_0005567.
7. application as claimed in claim 5, which is characterized in that the primer sequence of the hsa_circ_0045714 such as SEQ ID
NO:3 and SEQ ID NO:Shown in 4.
8. application as claimed in claim 5, which is characterized in that the primer sequence of the hsa_circ_0005567 such as SEQ ID
NO:5 and SEQ ID NO:Shown in 6.
9. application as claimed in claims 6 or 7, which is characterized in that the primer is suitable for SYBR Green, TaqMan probe
And/or the detection of molecular hybridization probe.
10. application as claimed in claim 5, which is characterized in that the kit further includes 10 × Buffer, dNTP, Mg2+、
Taq enzyme and fluorescent dye.
Priority Applications (1)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
CN201810637203.XA CN108823300B (en) | 2018-06-20 | 2018-06-20 | Application of circRNA in preparation of product for diagnosing osteoarthritis |
Applications Claiming Priority (1)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
CN201810637203.XA CN108823300B (en) | 2018-06-20 | 2018-06-20 | Application of circRNA in preparation of product for diagnosing osteoarthritis |
Publications (2)
Publication Number | Publication Date |
---|---|
CN108823300A true CN108823300A (en) | 2018-11-16 |
CN108823300B CN108823300B (en) | 2021-03-05 |
Family
ID=64142855
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
CN201810637203.XA Active CN108823300B (en) | 2018-06-20 | 2018-06-20 | Application of circRNA in preparation of product for diagnosing osteoarthritis |
Country Status (1)
Country | Link |
---|---|
CN (1) | CN108823300B (en) |
Cited By (2)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN111621562A (en) * | 2020-06-17 | 2020-09-04 | 湖州市第一人民医院 | Application of non-coding RNA in preparation of osteoarthritis early diagnosis and detection product |
CN113249464A (en) * | 2021-04-13 | 2021-08-13 | 广东省中医院(广州中医药大学第二附属医院、广州中医药大学第二临床医学院、广东省中医药科学院) | Use of circular RNA as osteoarthritis marker |
Citations (2)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN105296623A (en) * | 2015-10-29 | 2016-02-03 | 北京泱深生物信息技术有限公司 | Molecular marker for diagnosis of osteoarthritis |
CN105950714A (en) * | 2016-04-27 | 2016-09-21 | 范彧 | Osteoarthritis diagnosing product and application thereof |
-
2018
- 2018-06-20 CN CN201810637203.XA patent/CN108823300B/en active Active
Patent Citations (2)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN105296623A (en) * | 2015-10-29 | 2016-02-03 | 北京泱深生物信息技术有限公司 | Molecular marker for diagnosis of osteoarthritis |
CN105950714A (en) * | 2016-04-27 | 2016-09-21 | 范彧 | Osteoarthritis diagnosing product and application thereof |
Non-Patent Citations (3)
Title |
---|
BAO-FENG LI等: "Hsa_circ_0045714 regulates chondrocyte proliferation, apoptosis and extracellular matrix synthesis by promoting the expression of miR-193b target gene IGF1R", 《HUMAN CELL》 * |
QIANG LIU等: "Emerging Roles of circRNA Related to the Mechanical Stress in Human Cartilage Degradation of Osteoarthritis", 《MOLECULAR THERAPY: NUCLEIC ACIDS》 * |
于辰曦等: "CircRNAs在骨关节炎发生发展中的作用", 《生命的化学》 * |
Cited By (4)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN111621562A (en) * | 2020-06-17 | 2020-09-04 | 湖州市第一人民医院 | Application of non-coding RNA in preparation of osteoarthritis early diagnosis and detection product |
CN111621562B (en) * | 2020-06-17 | 2023-09-22 | 湖州市第一人民医院 | Application of non-coding RNA in preparation of osteoarthritis early diagnosis detection product |
CN113249464A (en) * | 2021-04-13 | 2021-08-13 | 广东省中医院(广州中医药大学第二附属医院、广州中医药大学第二临床医学院、广东省中医药科学院) | Use of circular RNA as osteoarthritis marker |
CN113249464B (en) * | 2021-04-13 | 2022-09-27 | 广东省中医院(广州中医药大学第二附属医院、广州中医药大学第二临床医学院、广东省中医药科学院) | Use of circular RNA as osteoarthritis marker |
Also Published As
Publication number | Publication date |
---|---|
CN108823300B (en) | 2021-03-05 |
Similar Documents
Publication | Publication Date | Title |
---|---|---|
CN103930563B (en) | For the method and apparatus predicting cancer return | |
Dunn et al. | Profiling microRNA expression in bovine articular cartilage and implications for mechanotransduction | |
Zhong et al. | MicroRNA-337 is associated with chondrogenesis through regulating TGFBR2 expression | |
CN109890394A (en) | The Microrna of biomarker as endometriosis | |
US20070281314A1 (en) | Methods for capture and detection of micro-RNA molecules from the skin by non-invasive tape stripping | |
CN105243293B (en) | The collection of prostate Related oncogene information and analysis system and method | |
CN106434982B (en) | The relevant molecular marked compound of cerebral arterial thrombosis and its application | |
Tsuru et al. | miR‐424 levels in hair shaft are increased in psoriatic patients | |
CN108823300A (en) | Application of the circRNA on the product of preparation diagnosis osteoarthritis | |
CN107028970A (en) | Applications of the miR 1288 in diagnosing or treating osteoarthritis disorders | |
CN108660204B (en) | Application of lncRNA in preparation of product for diagnosing or treating osteoarthritis | |
CN105400882B (en) | A kind of serum miRNA marker and application suitable for posterior longitudinal ligament ossification diagnosis | |
CN114015767B (en) | Serum circRNA marker for identifying craniosynostosis and application thereof | |
US9932640B1 (en) | Clinical use of an Alu element based bioinformatics methodology for the detection and treatment of cancer | |
GB2486424A (en) | Markers for plasma cell disorders | |
CN105950714B (en) | It is a kind of diagnose osteoarthritis product and its application | |
CN105886628B (en) | Application of the SPRR1A gene in preparation osteoarthritis diagnostic products | |
CN105755146A (en) | Application of SERPINB3 gene in preparing osteoarthritis diagnosis preparation | |
CN107937538B (en) | Glioma diagnosis marker circ1:201817088|201817285 and application | |
CN107029238B (en) | Applications of the LINC01094 in diagnosis and treatment cerebral arterial thrombosis | |
KR20150131556A (en) | MicroRNA-337 for the diagnosis and treatment of muscle aging | |
CN116144759B (en) | Application of LncRNA-ENST00000581911 in preparing thyroid-related eye disease diagnostic reagent | |
KR20150131555A (en) | MicroRNA-136 for the diagnosis and treatment of muscle aging | |
CN110592227B (en) | Application of biomarker in breast cancer | |
CN105256040A (en) | Application of KHDC1L gene serving as disease diagnosis marker |
Legal Events
Date | Code | Title | Description |
---|---|---|---|
PB01 | Publication | ||
PB01 | Publication | ||
SE01 | Entry into force of request for substantive examination | ||
SE01 | Entry into force of request for substantive examination | ||
GR01 | Patent grant | ||
GR01 | Patent grant |