CN108192961A - A kind of identification mesenchymal stem cell based on Microrna freezes the gene detecting kit of time - Google Patents

A kind of identification mesenchymal stem cell based on Microrna freezes the gene detecting kit of time Download PDF

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CN108192961A
CN108192961A CN201810280396.8A CN201810280396A CN108192961A CN 108192961 A CN108192961 A CN 108192961A CN 201810280396 A CN201810280396 A CN 201810280396A CN 108192961 A CN108192961 A CN 108192961A
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田红青
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Nanjing Qiannianjian Stem Cell Gene Engineering Co Ltd
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Abstract

The invention discloses the gene detecting kit that a kind of identification mesenchymal stem cell based on Microrna freezes the time, the qPCR primers including being used to measure 505 5p of hsa miR, 197 5p and hsa miR of hsa miR, 635 expressions;The identification mesenchymal stem cell freezes the time and refers to identification and distinguish to freeze and mesenchymal stem cell and freeze mesenchymal stem cell in 7~December 1~June.The present invention can quickly determine that the mesenchymal stem cell to be measured that freezes freezes for 1~June or freezes the mesenchymal stem cell in 7~December.

Description

A kind of identification mesenchymal stem cell based on Microrna freezes the gene of time Detection kit
Technical field
The invention belongs to genetic test fields, are related to a kind of gene detection reagent for identifying the mesenchymal stem cell cryopreserving time Box.
Background technology
It is most popular in mescenchymal stem cell, most prospect surely belong to mesenchymal stem cell and umbilical cord mesenchyma is done carefully Born of the same parents.
Liquid nitrogen frozen preserves mesenchymal stem cell in recent years or umbilical cord mesenchymal stem cells technology is used widely. However the shortcomings that liquid nitrogen cryopreservation cell is its highly volatile, Long-term Cryopreservation can cause liquid nitrogen to consume, it is necessary to be replenished in time.Therefore, All -80 DEG C of the uses of many research institutions carry out freezing protection to mesenchymal stem cell or umbilical cord mesenchymal stem cells (not to surpass Spend 12 months).
But -80 DEG C freeze the time to mesenchymal stem cell or umbilical cord mesenchymal stem cells biological characteristics and increasing Growing the influence of vigor does not have unified come to a conclusion also.In general, according to document and the experience that studies for a long period of time, -80 DEG C freeze 1~6 month Substantially the biological characteristics and proliferation activity of mesenchymal stem cell or umbilical cord mesenchymal stem cells will not be significantly affected, and- 80 DEG C of mesenchymal stem cells for freezing 7~12 months or the nucleus of umbilical cord mesenchymal stem cells and cytoplasm stability meeting It is deteriorated, proliferative capacity and differentiation capability can be a greater impact, and cause the poor (bibliography of experimental repeatability:Cryopreservation is to people The influence of umbilical cord mesenchymal stem cells biological characteristics, Acad J PLA Postgrad Med Sch, o. 11th of volume 33 in 2012;It is filled between marrow Matter stem cell freezing under -80 DEG C of cryogenic conditions, Chinese Tissue Engineering Study, the 10th phase of volume 20 in 2016).Therefore, it grinds The person of studying carefully usually selects -80 DEG C of mesenchymal stem cells frozen in 1~6 month or umbilical cord mesenchymal stem cells careful as kind Born of the same parents are studied.
But there is following deficiency in the prior art:
First, laboratory freezes in -80 DEG C of refrigerators to be filled as between the mesenchymal stem cell of seed cell or people's umbilical cord Matter stem cell can not usually determine freezing for the mesenchymal stem cell or human umbilical cord mesenchymal stem cells due to tag damage Time;
Second, although after mesenchymal stem cell or human umbilical cord mesenchymal stem cells can be recovered, by measuring it Proliferation activity and phenotype probably judge the time that freezes of the cell, but this method first by the mesenchymal stem cell frozen or Human umbilical cord mesenchymal stem cells are recovered, then in vitro culture, its proliferation activity of re-test and phenotype, time and effort consuming.
The present invention is intended to provide a kind of solve above-mentioned insufficient technical solution, to identify mesenchymal stem cell or people's navel The band mesenchymal stem cell cryopreserving time, while do not need to that the cell frozen recover can be operated.
Invention content
When being frozen present invention aims at a kind of identification mesenchymal stem cell of offer or human umbilical cord mesenchymal stem cells Between gene detecting kit, with quickly determine the mesenchymal stem cell or umbilical cord mesenchymal stem cells to be measured of freezing be to freeze Still the mesenchymal stem cell or umbilical cord mesenchymal stem cells in 7~December are frozen 1~June.
Above-mentioned purpose is achieved through the following technical solutions:
Mesenchymal stem cell-long-chain non-coding RNA
A kind of identification mesenchymal stem cell based on long-chain non-coding RNA freezes the gene detecting kit of time, QPCR primers including being used to measure LncRNAAK046999, LncRNA CDKN2B and LncRNAAK043773 expressions;Institute It states identification mesenchymal stem cell and freezes the time and refer to identification and distinguish to freeze and mesenchymal stem cell and freeze 7~12 1~June Month mesenchymal stem cell.
Preferably, measure LncRNAAK046999, LncRNACDKN2B and LncRNAAK043773 expression refers to Measure the relative expression levels of LncRNAAK046999, LncRNACDKN2B and LncRNAAK043773 relative to internal reference U6.
The qPCR sense primers of LncRNAAK046999 are 5'-TCTAAGAGTTTCGGCGAGCACCT-3';
The qPCR downstream primers of LncRNAAK046999 are 5'-TACACCATGCTACGACTGGTTTG-3'.
The qPCR sense primers of LncRNACDKN2B are 5'-GTATCCTACATCAGATGAGTCTG-3';
The qPCR downstream primers of LncRNACDKN2B are 5'-GGCATTCGTATACAATAGTCGTA-3'.
The qPCR sense primers of LncRNAAK043773 are 5'-GCAATCTTGTACGATACGAGGCTG-3';
The qPCR downstream primers of LncRNAAK043773 are 5'-GATTGACCAGTATGTAACCTAGGC-3'.
The qPCR sense primers of internal reference U6 are 5'-TTTAGGCTTGCCTCTGTAGTA-3';
The qPCR downstream primers of internal reference U6 are 5'-GAACCCTGCCAGGTGATTTTG-3'.
Preferably, reverse transcription reagents and qPCR reagents etc. are further included.
Mesenchymal stem cell-Microrna
A kind of identification mesenchymal stem cell based on Microrna freezes the gene detecting kit of time, including with In the qPCR primers for measuring hsa-miR-505-5p, hsa-miR-197-5p and hsa-miR-635 expression;Between identification marrow Mesenchymal stem cells freeze the time and refer to identification and distinguish to freeze and mesenchymal stem cell and freeze medulla mesenchyma in 7~December 1~June Stem cell.
Preferably, measure hsa-miR-505-5p, hsa-miR-197-5p and hsa-miR-635 expression refers to survey Determine the relative expression levels of hsa-miR-505-5p, hsa-miR-197-5p and hsa-miR-635 relative to internal reference U6.
The qPCR sense primers of hsa-miR-505-5p are 5'-TGTCCTACGCCATGCGCATATAAAG-3';
The qPCR downstream primers of hsa-miR-505-5p are 5'-AGTAACTAAGCGGCAGATGAATGG-3'.
The qPCR sense primers of hsa-miR-197-5p are 5'-TGTTTGACTTCACTGTGCCTCTGTTG-3';
The qPCR downstream primers of hsa-miR-197-5p are 5'-CACAATGGTTGTGGCTCGAACTGTG-3'.
The qPCR sense primers of hsa-miR-635 are 5'-CTTCAAGACTAGAAAGTGACACCT-3';
The qPCR downstream primers of hsa-miR-635 are 5'-TGCGCTAGGGGCGAGCAGTAGTG-3'.
The qPCR sense primers of internal reference U6 are 5'-TTTAGGCTTGCCTCTGTAGTA-3';
The qPCR downstream primers of internal reference U6 are 5'-GAACCCTGCCAGGTGATTTTG-3'.
Preferably, reverse transcription reagents and qPCR reagents etc. are further included.
Mesenchymal stem cell-circular rna
A kind of identification mesenchymal stem cell based on circular rna freezes the gene detecting kit of time, including with In the qPCR primers for measuring hsa_circ_0042254, hsa_circ_0033037 and hsa_circ_0057635 expression; The identification mesenchymal stem cell freeze the time refer to identification distinguish freeze mesenchymal stem cell in 1~June and freeze 7~ December mesenchymal stem cell.
Preferably, hsa_circ_0042254, hsa_circ_0033037 and hsa_circ_0057635 expression water are measured Flat refer to measures hsa_circ_0042254, hsa_circ_0033037 and hsa_circ_0057635 relative to the opposite of internal reference U6 Expression.
The qPCR sense primers of hsa_circ_0042254 are 5'-GCAACTGCTTTATGAACACAAGGA-3';
The qPCR downstream primers of hsa_circ_0042254 are 5'-GACTCCACCACGTGTCATGGGCAA-3'.
The qPCR sense primers of hsa_circ_0033037 are 5'-ACCATGCGAATCTGAGGTCTACAAGT-3';
The qPCR downstream primers of hsa_circ_0033037 are 5'-CCTAGCATTAGCATGTATCCAACGTG-3'.
The qPCR sense primers of hsa_circ_0057635 are 5'-GACTTACTCGTGGTAATGACATGA-3';
The qPCR downstream primers of hsa_circ_0057635 are 5'-AACTCACTCAGTCGATCCATGCTA-3'.
The qPCR sense primers of internal reference U6 are 5'-TTTAGGCTTGCCTCTGTAGTA-3';
The qPCR downstream primers of internal reference U6 are 5'-GAACCCTGCCAGGTGATTTTG-3'.
Preferably, reverse transcription reagents and qPCR reagents etc. are further included.
Umbilical cord mesenchymal stem cells-long-chain non-coding RNA
A kind of identification umbilical cord mesenchymal stem cells based on long-chain non-coding RNA freeze the gene detecting kit of time, QPCR including being used to measure LncRNA LINC01001, LncRNA LINC00265 and LncRNA LINC00152 expressions Primer;It is described identification umbilical cord mesenchymal stem cells freeze the time refer to identification distinguish freeze umbilical cord mesenchymal stem cells in 1~June and jelly Deposit umbilical cord mesenchymal stem cells in 7~December.
Preferably, it is described to measure LncRNALINC01001, LncRNALINC00265 and LncRNALINC00152 expression water Flat refer to measures the opposite table of LncRNALINC01001, LncRNALINC00265 and LncRNALINC00152 relative to internal reference U6 Up to level.
Preferably, the qPCR sense primers of LncRNALINC01001 are 5'-TAGTGAGATTCGCTCTCGTGG-3', QPCR downstream primers are 5'-TGCAGATCTCGTGCTTGCTTT-3'.
The qPCR sense primers of LncRNALINC00265 be 5'-TGAGTCAATGCAAGGCTGATAGG-3', qPCR downstreams Primer is 5'-CGTCTGACTCATGACGTAGGAAC-3'.
The qPCR sense primers of LncRNALINC00152 be 5'-TCTAATGCAGAGATAATGCTGGC-3', qPCR downstreams Primer is 5'-ACAGGACACCAACAGACATGG-3'.
Preferably, the qPCR sense primers of internal reference U6 be 5'-TTTAGGCTTGCCTCTGTAGTA-3', qPCR downstream primers For 5'-GAACCCTGCCAGGTGATTTTG-3'.
Preferably, reverse transcription reagents and qPCR reagents etc. are further included.
Umbilical cord mesenchymal stem cells-Microrna
A kind of identification umbilical cord mesenchymal stem cells based on Microrna freeze the gene detecting kit of time, including with In the qPCR primers for measuring hsa-miR-615-3p, hsa-miR-455-5p and hsa-miR-219b-3p expression;The mirror Determine umbilical cord mesenchymal stem cells and freeze the time to refer to identification and distinguish to freeze and umbilical cord mesenchymal stem cells and freeze navel in 7~December 1~June Band mescenchymal stem cell.
Preferably, measure hsa-miR-615-3p, hsa-miR-455-5p and hsa-miR-219b-3p expression Refer to and measure the relative expression's water of hsa-miR-615-3p, hsa-miR-455-5p and hsa-miR-219b-3p relative to internal reference U6 It is flat.
Preferably, the qPCR sense primers of hsa-miR-615-3p are 5'-CACGTTGCTACATGGTACGAAC-3', QPCR downstream primers are 5'-AAGAACAGAGTGTGGTACACG-3'.
Preferably, the qPCR sense primers of hsa-miR-455-5p are 5'-GTTGATAGAGAGGTGTGACGTG-3', QPCR downstream primers are 5'-CGAGCCAGAACGATAATAGTCT-3'.
Preferably, the qPCR sense primers of hsa-miR-219b-3p are 5'-GATCCTTCTGGTAGTGGACGG-3', QPCR downstream primers are 5'-TGCCGGTCTGACTTGTCTTCG-3'.
Preferably, the qPCR sense primers of internal reference U6 be 5'-TTTAGGCTTGCCTCTGTAGTA-3', qPCR downstream primers For 5'-GAACCCTGCCAGGTGATTTTG-3'.
Preferably, reverse transcription reagents and qPCR reagents etc. are further included.
Umbilical cord mesenchymal stem cells-circular rna
A kind of identification umbilical cord mesenchymal stem cells based on circular rna freeze the gene detecting kit of time, including with In the qPCR primers for measuring hsa_circ_0012332, hsa_circ_0083703 and hsa_circ_0023538 expression; The identification umbilical cord mesenchymal stem cells freeze the time refer to identification distinguish freeze umbilical cord mesenchymal stem cells in 1~June and freeze 7~ December umbilical cord mesenchymal stem cells.
Preferably, hsa_circ_0012332, hsa_circ_0083703 and hsa_circ_0023538 expression water are measured Flat refer to measures hsa_circ_0012332, hsa_circ_0083703 and hsa_circ_0023538 relative to the opposite of internal reference U6 Expression.
The qPCR sense primers of hsa_circ_0012332 are 5'-GATGCTGTTCCCAAGAAACCTGAA-3', under qPCR Trip primer is 5'-CTTAAATGCTGACTGGTCAGTAACT-3'.
The qPCR sense primers of hsa_circ_0083703 are 5'-CGTGACCGATTGACCATACATTGAG-3', qPCR Downstream primer is 5'-GTGAACTCCAGCTTAACAGGTCTA-3'.
The qPCR sense primers of hsa_circ_0023538 are 5'-TACACTGAAGGTGTGCCAATTACA-3', under qPCR Trip primer is 5'-ACATCTAGGAGCACTGTCAGGAGT-3'.
Preferably, the qPCR sense primers of internal reference U6 be 5'-TTTAGGCTTGCCTCTGTAGTA-3', qPCR downstream primers For 5'-GAACCCTGCCAGGTGATTTTG-3'.
Preferably, reverse transcription reagents and qPCR reagents etc. are further included.
Gene detecting kit provided by the invention has the following advantages that:
First, laboratory freezes in -80 DEG C of refrigerators to be filled as between the mesenchymal stem cell of seed cell or people's umbilical cord Matter stem cell can not usually determine freezing for the mesenchymal stem cell or human umbilical cord mesenchymal stem cells due to tag damage Time can measure the human marrow mesenchymal stem cell by kit of the present invention or human umbilical cord mesenchymal stem cells belong to and freeze Still the mesenchymal stem cell or human umbilical cord mesenchymal stem cells in 7~December are frozen 1~June;
Second, the mescenchymal stem cell that can directly freeze carries out analysis detection, recovers without thawing, simple, efficient.
Description of the drawings
Fig. 1 is LncRNAAK046999, LncRNA CDKN2B, LncRNAAK043773 joint identification are distinguished and freezes 1~6 Month mesenchymal stem cell and the ROC curve for freezing mesenchymal stem cell in 7~December;
Fig. 2 is distinguished for hsa-miR-505-5p, hsa-miR-197-5p, hsa-miR-635 joint identification and is frozen for 1~June Mesenchymal stem cell and the ROC curve for freezing mesenchymal stem cell in 7~December;
Fig. 3 is distinguished for hsa_circ_0042254, hsa_circ_0033037, hsa_circ_0057635 joint identification to be frozen It deposits mesenchymal stem cell in 1~June and freezes the ROC curve of mesenchymal stem cell in 7~December;
Fig. 4 is LncRNALINC01001, LncRNALINC00265, LncRNA LINC00152 joint identification are distinguished and frozen Umbilical cord mesenchymal stem cells and freeze the ROC curves of umbilical cord mesenchymal stem cells in 7~December 1~June;
Fig. 5 distinguishes for hsa-miR-615-3p, hsa-miR-455-5p, hsa-miR-219b-3p joint identification and freezes 1~ Umbilical cord mesenchymal stem cells and freeze the ROC curves of umbilical cord mesenchymal stem cells in 7~December June;
Fig. 6 is distinguished for hsa_circ_0012332, hsa_circ_0083703, hsa_circ_0023538 joint identification to be frozen It deposits umbilical cord mesenchymal stem cells in 1~June and freezes the ROC curve of umbilical cord mesenchymal stem cells in 7~December.
Specific embodiment
Technical scheme of the present invention is introduced with reference to specific embodiment.
Embodiment 1:Identification mesenchymal stem cell freezes the gene detecting kit of time
First, experiment material
L-DMEM culture mediums and fetal calf serum are purchased from Gibco companies of the U.S..RNA extracts kits TRIzol is purchased from Invitrogen companies, Reverse Transcriptase kit are purchased from TaKaRa companies, and qPCR reagents are purchased from Vazyme companies.
2nd, experimental method
1st, the in-vitro separation of mesenchymal stem cell, culture, pass on and freeze
The bone marrow fluid 5ml and test tube of hepari of aseptic aspiration healthy volunteer, the L- with equivalent volumes, containing 10% fetal calf serum DMEM culture solution mixings are placed in ficoll separating liquids (proportion 1.077), and 2000r/min centrifuges 20min, visible mixed after centrifugation It closes liquid and is divided into four layers from top to bottom:Flaxen top layer is serum;The second layer is poor tunica albuginea layer, that is, mononuclearcell;The Three layers of lymphocyte separation medium for water white transparency;The bottom is red blood cell layer.The mononuclearcell in tunica albuginea layer is collected, to contain The L-DMEM culture solutions of 10% fetal calf serum are resuspended cell and are counted, with 1 × 106The density of/ml is inoculated in the training of 50ml It supports in bottle, is placed in 37 DEG C, the CO of volume fraction 5%2Incubator is incubated.It is non-adherent to discard to replace culture medium for full dose after for 24 hours Hereafter cell carries out half amount and changes liquid, as primary (P0) mesenchymal stem cell every other day.
When primary cultured cell pastes culture bottle floor space up to 60%~70% or so, exhaust culture medium and wash 1 with PBS It is secondary, 0.25% trypsase and each 0.5ml mixture slakings cells of 0.02%EDTA of 37 DEG C of pre-temperatures are added in, it can under mirror after about 3min See that cellular contraction shortens, gap increases, add in the L-DMEM containing 10% fetal calf serum and terminate digestion.Gently blown and beaten with suction pipe until Attached cell suspends, and draws cell suspension, and 1000r/min centrifugation 5min are washed 2 times.Finally with the L- of 10% fetal calf serum Cell is resuspended in DMEM culture solutions, is inoculated in respectively in the culture bottle of two bottles of 50ml, cell at this time is known as P1 for cell.With method into Respectively for the secondary culture of cell until reaching P3 generations after row.It is thin that P3 is sub-packed in for mesenchymal stem cell to 1.5ml respectively - 80 DEG C of born of the same parents' cryopreservation tube freezes for 1~December, if monthly main pipe, label is spare.
2nd, Total RNAs extraction and target RNA relative expression levels measure
Cryopreservation tube from liquid nitrogen is taken out, the method RNA extracts kits of RNA are directly extracted according to freeze-stored cell TRIzol extracts total serum IgE, and NanoDrop ND-1000 measure 260nm/280nm absorbance ratios range 1.8~2.0.
Using U6 as internal reference, each sample is detected using qPCR methods according to Reverse Transcriptase kit, qPCR reagents operation instructions The relative expression levels of middle target RNA, as a result using 2-ΔΔCtMethod carries out relative quantitative assay.
The qPCR primers of target RNA and internal reference U6 are as shown in the table.
3rd, data analysis
It is for statistical analysis using 19.0 softwares of SPSS.The measurement data of normal distribution represents with means standard deviation, two Comparison among groups use two independent samples t tests;Non-Gaussian Distribution measurement data represents that two comparison among groups use Mann- with M (QR) Whitney U are examined;Enumeration data compares using Fisher's exact propability.
LncRNA AK046999, LncRNA CDKN2B, LncRNA are calculated using binary Logistic regression analyses The united Logistic regression equations of AK043773;Draw LncRNAAK046999, LncRNACDKN2B, LncRNA AK043773 and its joint identification are distinguished to freeze mesenchymal stem cell in 1~June and freeze medulla mesenchyma in 7~December and be done carefully Receiver operating curve's (ROC curve) of born of the same parents calculates area (AUC) under ROC curve.There is statistics for difference with P < 0.05 Learn meaning.
Hsa-miR-505-5p, hsa-miR-197-5p, hsa-miR-635 are calculated using binary Logistic regression analyses United Logistic regression equations;Draw hsa-miR-505-5p, hsa-miR-197-5p, hsa-miR-635 and its joint The subject work spy for freezing mesenchymal stem cell in 1~June and freezing mesenchymal stem cell in 7~December is distinguished in identification Curve (ROC curve) is levied, calculates area (AUC) under ROC curve.It is statistically significant for difference with P < 0.05.
Hsa_circ_0042254, hsa_circ_0033037, hsa_ are calculated using binary Logistic regression analyses The united Logistic regression equations of circ_0057635;Draw hsa_circ_0042254, hsa_circ_0033037, hsa_ Circ_0057635 and its joint identification, which are distinguished, to be frozen mesenchymal stem cell in 1~June and freezes medulla mesenchyma in 7~December Receiver operating curve's (ROC curve) of stem cell calculates area (AUC) under ROC curve.Have with P < 0.05 for difference Statistical significance.
3rd, experimental result
1st, LncRNAAK046999, LncRNACDKN2B, LncRNAAK043773 and its joint identification are distinguished and freeze 1~6 Month mesenchymal stem cell and the value for freezing mesenchymal stem cell in 7~December
It randomly selects and freezes mesenchymal stem cell in 1~June and monthly each 20 pipe measurement result and freeze marrow in 7~December Mescenchymal stem cell monthly each 20 pipe measurement result as training set;Another randomly select freezes mesenchymal stem cell in 1~June Monthly monthly each 20 pipe measurement result collects each 20 pipe measurement result as verification with mesenchymal stem cell in 7~December is frozen.
In training set, LncRNAAK046999, LncRNACDKN2B, LncRNAAK043773 are freezing marrow in 7~December Relative expression quantity in mescenchymal stem cell is shown respectively than the relative expression quantity in mesenchymal stem cell in 1~June is frozen Write 3~4 times of up-regulation.LncRNAAK046999, LncRNA CDKN2B, LncRNAAK043773 identifications are distinguished and freeze 1~6 lunar Bone marrow-drived mesenchymal stem and the AUC for freezing mesenchymal stem cell in 7~December are respectively 0.628,0.685,0.677.With bone Bone marrow-drived mesenchymal stem algebraically is dependent variable (assignment:1~June=0 is frozen, freezes 7~December=1), LncRNA AK046999, LncRNACDKN2B, LncRNAAK043773 are independent variable (continuous variable), carry out binary Logistic recurrence Analysis, the results show that Logit (P)=- 2.172+4.833 × LncRNA AK046999+5.074 × LncRNA CDKN2B+ 4.565 × LncRNAAK043773, identification, which is distinguished, to be frozen mesenchymal stem cell in 1~June and freezes between marrow in 7~December The AUC of mesenchymal stem cells is 0.921, and cutoff value is 2.886 (ROC curve is shown in Fig. 1).LncRNAAK046999、LncRNA CDKN2B, LncRNAAK043773 joint identification differentiation freeze mesenchymal stem cell in 1~June and freeze marrow in 7~December The AUC of mescenchymal stem cell is noticeably greater than LncRNAAK046999, LncRNA CDKN2B, LncRNA AK043773 and individually identifies Distinguish the AUC for freezing mesenchymal stem cell in 1~June and freezing mesenchymal stem cell in 7~December.
Verification is concentrated, respectively that each sample LncRNAAK046999, LncRNA CDKN2B, LncRNAAK043773 is opposite Expression substitutes into binary Logistic regression equations, and the medulla mesenchyma in 7~December that is predicted as freezing higher than cutoff value is done carefully Born of the same parents are predicted as freezing mesenchymal stem cell in 1~June, and compared with practical algebraically, as a result this method is pre- less than cutoff value It is 92.08% to survey accuracy rate.
2nd, hsa-miR-505-5p, hsa-miR-197-5p, hsa-miR-635 and its joint identification are distinguished and freeze for 1~June Mesenchymal stem cell and the value for freezing mesenchymal stem cell in 7~December
It randomly selects and freezes mesenchymal stem cell in 1~June and monthly each 20 pipe and freeze medulla mesenchyma in 7~December and do Cell monthly each 20 pipe as training set;Another randomly select freezes mesenchymal stem cell in 1~June and monthly each 20 pipe and freezes 7~December mesenchymal stem cell monthly each 20 pipe collect as verification.
In training set, hsa-miR-505-5p, hsa-miR-197-5p, hsa-miR-635 are between marrow in 7~December is frozen Relative expression quantity in mesenchymal stem cells is more notable than the relative expression quantity difference in mesenchymal stem cell in 1~June is frozen 3~4 times of up-regulation.Hsa-miR-505-5p, hsa-miR-197-5p, hsa-miR-635 identification differentiation are frozen between marrow in 1~June Mesenchymal stem cells and the AUC for freezing mesenchymal stem cell in 7~December are respectively 0.646,0.659,0.653.Between marrow Mesenchymal stem cells algebraically is dependent variable (assignment:1~June=0 is frozen, freezes 7~December=1), hsa-miR-505-5p, hsa- MiR-197-5p, hsa-miR-635 are independent variable (continuous variable), carry out binary Logistic regression analyses, the results show that Logit (P)=- 3.144+5.138 × hsa-miR-505-5p+5.569 × hsa-miR-197-5p+4.147 × hsa-miR- 635, identifying that differentiation freezes mesenchymal stem cell in 1~June and freezes the AUC of mesenchymal stem cell in 7~December is 0.918, cutoff value is 3.073 (ROC curve is shown in Fig. 2).Hsa-miR-505-5p, hsa-miR-197-5p, hsa-miR-635 join Close identification distinguish freeze 1~June mesenchymal stem cell and freeze mesenchymal stem cell in 7~December AUC it is significantly big Individually identify that differentiation freezes medulla mesenchyma in 1~June and does in hsa-miR-505-5p, hsa-miR-197-5p, hsa-miR-635 Cell and the AUC for freezing mesenchymal stem cell in 7~December.
Verification is concentrated, respectively by each sample hsa-miR-505-5p, hsa-miR-197-5p, hsa-miR-635 with respect to table Binary Logistic regression equations are substituted into up to level, are predicted as freezing mesenchymal stem cell in 7~December higher than cutoff value, It is predicted as freezing mesenchymal stem cell in 1~June, and compared with practical algebraically less than cutoff value, as a result this method is predicted Accuracy rate is 90.83%.
3rd, hsa_circ_0042254, hsa_circ_0033037, hsa_circ_0057635 and its joint identification are distinguished It freezes mesenchymal stem cell in 1~June and freezes the value of mesenchymal stem cell in 7~December
It randomly selects and freezes mesenchymal stem cell in 1~June and monthly each 20 pipe and freeze medulla mesenchyma in 7~December and do Cell monthly each 20 pipe as training set;Another randomly select freezes mesenchymal stem cell in 1~June and monthly each 20 pipe and freezes 7~December mesenchymal stem cell monthly each 20 pipe collect as verification.
In training set, hsa_circ_0042254, hsa_circ_0033037, hsa_circ_0057635 freeze 7~ Relative expression quantity in December mesenchymal stem cell is than the relative expression in mesenchymal stem cell in 1~June is frozen Amount significantly 3.2~4.2 times of up-regulation respectively.Hsa_circ_0042254, hsa_circ_0033037, hsa_circ_0057635 reflect It is fixed distinguish to freeze mesenchymal stem cell in 1~June and freeze the AUC of mesenchymal stem cell in 7~December be respectively 0.702、0.671、0.686.Using mesenchymal stem cell algebraically as dependent variable (assignment:1~June=0 is frozen, freezes 7~12 Month=1), (continuous type becomes for independent variable by hsa_circ_0042254, hsa_circ_0033037, hsa_circ_0057635 Amount), binary Logistic regression analyses are carried out, the results show that Logit (P)=- 2.759+5.812 × hsa_circ_ 0042254+6.303 × hsa_circ_0033037+4.909 × hsa_circ_0057635, identification are distinguished and freeze for 1~June Mesenchymal stem cell and the AUC for freezing mesenchymal stem cell in 7~December are 0.929, and cutoff value is 3.295 (ROC songs Line is shown in Fig. 3).Hsa_circ_0042254, hsa_circ_0033037, hsa_circ_0057635 joint identification, which are distinguished, freezes 1 It mesenchymal stem cell and freezes the AUC of mesenchymal stem cell in 7~December and is noticeably greater than hsa_circ_~June 0042254th, hsa_circ_0033037, hsa_circ_0057635 individually identify that differentiation freezes medulla mesenchyma in 1~June and does carefully Born of the same parents and the AUC for freezing mesenchymal stem cell in 7~December.
Verification is concentrated, respectively by each sample hsa_circ_0042254, hsa_circ_0033037, hsa_circ_ 0057635 relative expression levels substitute into binary Logistic regression equations, are predicted as freezing marrow in 7~December higher than cutoff value Mescenchymal stem cell is predicted as freezing mesenchymal stem cell in 1~June, and compared with practical algebraically less than cutoff value, knot Fruit this method predictablity rate is 92.50%.
4th, identification differentiation freezes mesenchymal stem cell in 1~June and freezes the examination of mesenchymal stem cell in 7~December Agent box
A kind of identification, which is distinguished, to be frozen mesenchymal stem cell in 1~June and freezes mesenchymal stem cell in 7~December Kit, containing LncRNAAK046999, LncRNACDKN2B, LncRNAAK043773, internal reference U6 qPCR primers, also contain Reverse transcription reagents, qPCR reagents.LncRNAAK046999, LncRNACDKN2B, LncRNAAK043773, internal reference U6 qPCR draw Object is as shown in the table.
A kind of identification, which is distinguished, to be frozen mesenchymal stem cell in 1~June and freezes mesenchymal stem cell in 7~December Kit, containing hsa-miR-505-5p, hsa-miR-197-5p, hsa-miR-635, internal reference U6 qPCR primers, also contain Reverse transcription reagents, qPCR reagents.Hsa-miR-505-5p, hsa-miR-197-5p, hsa-miR-635, internal reference U6 qPCR draw Object is as shown in the table.
A kind of identification, which is distinguished, to be frozen mesenchymal stem cell in 1~June and freezes mesenchymal stem cell in 7~December Kit, the qPCR containing hsa_circ_0042254, hsa_circ_0033037, hsa_circ_0057635, internal reference U6 draw Object, also containing reverse transcription reagents, qPCR reagents.hsa_circ_0042254、hsa_circ_0033037、hsa_circ_ 0057635th, the qPCR primers of internal reference U6 are as shown in the table.
Embodiment 2:Identification umbilical cord mesenchymal stem cells freeze the gene detecting kit of time
First, experiment material
DMEM/F12 culture mediums and fetal calf serum are purchased from Gibco companies of the U.S..RNA extracts kits TRIzol is purchased from Invitrogen companies, Reverse Transcriptase kit are purchased from TaKaRa companies, and qPCR reagents are purchased from Vazyme companies.
2nd, experimental method
1st, the in-vitro separation of umbilical cord mesenchymal stem cells, culture and continuous passage
1. it digests:8cm or so umbilical cord tissues (newborn from health full term Cesarean esction) are taken, are washed with sterile PBS Except residual blood, about 1mm × 1mm × 1mm sizes are cut into, through 0.15% clostridiopetidase A II, 37 DEG C incubate digestion 4h, and 200 mesh screens filter, Collect cell and with trypan blue staining living cell counting number.2. adherent separation:Cell is suspended in containing 10% tire ox of volume fraction The DMEM/F12 complete culture solutions of serum, are inoculated into T25 culture bottles, control inoculating cell a concentration of 2.4 × 104/cm2, put 37 DEG C, volume fraction 5%CO2In incubator, full dose changes liquid after saturated humidity culture 3d, continues to cultivate and observes cell growth feelings Condition (this cell is primary umbilical cord mesenchymal stem cells P0).3. it passes on:When culture cell reaches 90% fusion, digestive juice is used (0.25% pancreatin -0.01%EDTA solution) processing about 3min, it centrifuges, abandon supernatant, the resuspension of sedimentation cell complete culture solution simultaneously It is counted, is inoculated in new T25 culture bottles with trypan blue, control inoculating cell a concentration of 2.4 × 104/cm2, put CO2Incubator In continue to cultivate and observe cell growth status, this cell is P1 for cell.It is respectively trained after being carried out with method for the passage of cell It supports.P3 is sub-packed in -80 DEG C of 1.5ml cell cryopreservation tubes for umbilical cord mesenchymal stem cells respectively and freezes for 1~December, it is monthly several Pipe, label are spare.
2nd, Total RNAs extraction and target RNA relative quantifications measure
Cryopreservation tube from liquid nitrogen is taken out, the method RNA extracts kits of RNA are directly extracted according to freeze-stored cell TRIzol extracts total serum IgE, and NanoDrop ND-1000 measure 260nm/280nm absorbance ratios range 1.8~2.0.
Using U6 as internal reference, each sample is detected using qPCR methods according to Reverse Transcriptase kit, qPCR reagents operation instructions The relative expression levels of middle target RNA, as a result using 2-ΔΔCtMethod carries out relative quantitative assay.
The qPCR primers of target RNA and internal reference U6 are as shown in the table.
3rd, data analysis
It is for statistical analysis using 19.0 softwares of SPSS.The measurement data of normal distribution represents with means standard deviation, two Comparison among groups use two independent samples t tests;Non-Gaussian Distribution measurement data represents that two comparison among groups use Mann- with M (QR) Whitney U are examined;Enumeration data compares using Fisher's exact propability.
LncRNA LINC01001, LncRNA LINC00265, LncRNA are calculated using binary Logistic regression analyses The united Logistic regression equations of LINC00152;Draw LncRNALINC01001, LncRNALINC00265, LncRNA LINC00152 and its joint identification are distinguished to freeze umbilical cord mesenchymal stem cells in 1~June and freeze umbilical cord mesenchyma in 7~December and be done Receiver operating curve's (ROC curve) of cell calculates area (AUC) under ROC curve.There is system for difference with P < 0.05 Meter learns meaning.
Hsa-miR-615-3p, hsa-miR-455-5p, hsa-miR- are calculated using binary Logistic regression analyses The united Logistic regression equations of 219b-3p;Draw hsa-miR-615-3p, hsa-miR-455-5p, hsa-miR-219b- 3p and its joint identification distinguish freeze 1~June umbilical cord mesenchymal stem cells and freeze umbilical cord mesenchymal stem cells in 7~December by Examination person's performance curve (ROC curve) calculates area (AUC) under ROC curve.It is statistically significant for difference with P < 0.05.
Hsa_circ_0012332, hsa_circ_0083703, hsa_ are calculated using binary Logistic regression analyses The united Logistic regression equations of circ_0023538;Draw hsa_circ_0012332, hsa_circ_0083703, hsa_ Circ_0023538 and its joint identification, which are distinguished, to be frozen umbilical cord mesenchymal stem cells in 1~June and freezes umbilical cord mesenchyma in 7~December Receiver operating curve's (ROC curve) of stem cell calculates area (AUC) under ROC curve.Have with P < 0.05 for difference Statistical significance.
3rd, experimental result
1st, LncRNA LINC01001, LncRNA LINC00265, LncRNA LINC00152 and its joint identification are distinguished It freezes umbilical cord mesenchymal stem cells in 1~June and freezes the value of umbilical cord mesenchymal stem cells in 7~December
It randomly selects and freezes umbilical cord mesenchymal stem cells in 1~June and monthly each 20 pipe and freeze umbilical cord mesenchyma in 7~December and do Cell monthly each 20 pipe as training set;Another randomly select freezes umbilical cord mesenchymal stem cells in 1~June and monthly each 20 pipe and freezes 7~December umbilical cord mesenchymal stem cells monthly each 20 pipe collect as verification.
In training set, LncRNALINC01001, LncRNALINC00265, LncRNALINC00152 are freezing for 7~December Relative expression quantity in umbilical cord mesenchymal stem cells is than the relative expression quantity in umbilical cord mesenchymal stem cells in 1~June are frozen point 3~4 times are not raised not significantly.LncRNALINC01001, LncRNA LINC00265, LncRNALINC00152 identifications are distinguished and are frozen 1~June umbilical cord mesenchymal stem cells and freeze umbilical cord mesenchymal stem cells in 7~December AUC be respectively 0.680,0.693, 0.678.Using umbilical cord mesenchymal stem cells algebraically as dependent variable (assignment:1~June=0 is frozen, freezes 7~December=1), LncRNA LINC01001, LncRNA LINC00265, LncRNALINC00152 are independent variable (continuous variable), carry out two First Logistic regression analyses, the results show that Logit (P)=- 3.410+4.055 × LncRNALINC01001+4.172 × LncRNA LINC00265+3.992 × LncRNA LINC00152, identification are distinguished and freeze umbilical cord mesenchymal stem cells in 1~June It is 0.909 with the AUC of umbilical cord mesenchymal stem cells in 7~December is frozen, cutoff value is 2.718 (ROC curve is shown in Fig. 4).LncRNA LINC01001, LncRNA LINC00265, LncRNALINC00152 joint identification differentiations freeze umbilical cord mesenchyma in 1~June and do Cell is noticeably greater than LncRNA LINC01001, LncRNA with the AUC for freezing umbilical cord mesenchymal stem cells in 7~December LINC00265, LncRNALINC00152 individually identify that differentiation freezes umbilical cord mesenchymal stem cells in 1~June and freezes for 7~December The AUC of umbilical cord mesenchymal stem cells.
Verification is concentrated, respectively by each sample LncRNALINC01001, LncRNALINC00265, LncRNALINC00152 Relative expression levels substitute into binary Logistic regression equations, are predicted as freezing umbilical cord mesenchyma in 7~December higher than cutoff value Stem cell is predicted as freezing umbilical cord mesenchymal stem cells in 1~June, and compared with practical algebraically, as a result the party less than cutoff value Method predictablity rate is 90.42%.
2nd, hsa-miR-615-3p, hsa-miR-455-5p, hsa-miR-219b-3p and its joint identification are distinguished and freeze 1 Umbilical cord mesenchymal stem cells and freeze the values of umbilical cord mesenchymal stem cells in 7~December~June
It randomly selects and freezes umbilical cord mesenchymal stem cells in 1~June and monthly each 20 pipe and freeze umbilical cord mesenchyma in 7~December and do Cell monthly each 20 pipe as training set;Another randomly select freezes umbilical cord mesenchymal stem cells in 1~June and monthly each 20 pipe and freezes 7~December umbilical cord mesenchymal stem cells monthly each 20 pipe collect as verification.
In training set, hsa-miR-615-3p, hsa-miR-455-5p, hsa-miR-219b-3p are freezing navel in 7~December With the relative expression quantity in mescenchymal stem cell than the relative expression quantity difference in umbilical cord mesenchymal stem cells in 1~June are frozen Significantly 3~4 times of up-regulation.Hsa-miR-615-3p, hsa-miR-455-5p, hsa-miR-219b-3p identification, which are distinguished, freezes 1~6 Month umbilical cord mesenchymal stem cells and the AUC for freezing umbilical cord mesenchymal stem cells in 7~December are respectively 0.686,0.713,0.695. Using umbilical cord mesenchymal stem cells algebraically as dependent variable (assignment:1~June=0 is frozen, freezes 7~December=1), hsa-miR- 615-3p, hsa-miR-455-5p, hsa-miR-219b-3p are independent variable (continuous variable), carry out binary Logistic and return Return analysis, the results show that Logit (P)=- 4.144+5.975 × hsa-miR-615-3p+6.344 × hsa-miR-455-5p+ 5.324 × hsa-miR-219b-3p, identification, which is distinguished, to be frozen umbilical cord mesenchymal stem cells in 1~June and freezes umbilical cord in 7~December The AUC of mescenchymal stem cell is 0.915, and cutoff value is 2.803 (ROC curve is shown in Fig. 5).hsa-miR-615-3p、hsa-miR- 455-5p, hsa-miR-219b-3p joint identification differentiation freeze umbilical cord mesenchymal stem cells in 1~June and freeze umbilical cord in 7~December The AUC of mescenchymal stem cell is noticeably greater than hsa-miR-615-3p, hsa-miR-455-5p, hsa-miR-219b-3p and individually reflects It is fixed to distinguish the AUC for freezing umbilical cord mesenchymal stem cells in 1~June and freezing umbilical cord mesenchymal stem cells in 7~December.
Verification is concentrated, respectively by each sample hsa-miR-615-3p, hsa-miR-455-5p, hsa-miR-219b-3p phase Binary Logistic regression equations are substituted into expression, the umbilical cord mesenchyma in 7~December that is predicted as freezing higher than cutoff value is done Cell is predicted as freezing umbilical cord mesenchymal stem cells in 1~June, and compared with practical algebraically, as a result this method less than cutoff value Predictablity rate is 91.25%.
3rd, hsa_circ_0012332, hsa_circ_0083703, hsa_circ_0023538 and its joint identification are distinguished It freezes umbilical cord mesenchymal stem cells in 1~June and freezes the value of umbilical cord mesenchymal stem cells in 7~December
It randomly selects and freezes umbilical cord mesenchymal stem cells in 1~June and monthly each 20 pipe and freeze umbilical cord mesenchyma in 7~December and do Cell monthly each 20 pipe as training set;Another randomly select freezes umbilical cord mesenchymal stem cells in 1~June and monthly each 20 pipe and freezes 7~December umbilical cord mesenchymal stem cells monthly each 20 pipe collect as verification.
In training set, hsa_circ_0012332, hsa_circ_0083703, hsa_circ_0023538 freeze 7~ Relative expression quantity in December umbilical cord mesenchymal stem cells is than the relative expression in umbilical cord mesenchymal stem cells in 1~June are frozen Amount significantly 3.5~4.5 times of up-regulation respectively.Hsa_circ_0012332, hsa_circ_0083703, hsa_circ_0023538 reflect It is fixed distinguish to freeze umbilical cord mesenchymal stem cells in 1~June and freeze the AUC of umbilical cord mesenchymal stem cells in 7~December be respectively 0.725、0.694、0.708.Using umbilical cord mesenchymal stem cells algebraically as dependent variable (assignment:1~June=0 is frozen, freezes 7~12 Month=1), (continuous type becomes for independent variable by hsa_circ_0012332, hsa_circ_0083703, hsa_circ_0023538 Amount), binary Logistic regression analyses are carried out, the results show that Logit (P)=- 3.797+6.181 × hsa_circ_ 0012332+7.144 × hsa_circ_0083703+6.291 × hsa_circ_0023538, identification are distinguished and freeze for 1~June Umbilical cord mesenchymal stem cells and the AUC for freezing umbilical cord mesenchymal stem cells in 7~December are 0.930, and cutoff value is 3.045 (ROC songs Line is shown in Fig. 6).Hsa_circ_0012332, hsa_circ_0083703, hsa_circ_0023538 joint identification, which are distinguished, freezes 1 It umbilical cord mesenchymal stem cells and freezes the AUC of umbilical cord mesenchymal stem cells in 7~December and is noticeably greater than hsa_circ_~June 0012332nd, hsa_circ_0083703, hsa_circ_0023538 individually identify that differentiation freezes umbilical cord mesenchyma in 1~June and does carefully Born of the same parents and the AUC for freezing umbilical cord mesenchymal stem cells in 7~December.
Verification is concentrated, respectively by each sample hsa_circ_0012332, hsa_circ_0083703, hsa_circ_ 0023538 relative expression levels substitute into binary Logistic regression equations, are predicted as freezing umbilical cord in 7~December higher than cutoff value Mescenchymal stem cell is predicted as freezing umbilical cord mesenchymal stem cells in 1~June, and compared with practical algebraically less than cutoff value, knot Fruit this method predictablity rate is 93.75%.
4th, identification differentiation freezes umbilical cord mesenchymal stem cells in 1~June and freezes the examination of umbilical cord mesenchymal stem cells in 7~December Agent box
A kind of identification, which is distinguished, to be frozen umbilical cord mesenchymal stem cells in 1~June and freezes umbilical cord mesenchymal stem cells in 7~December Kit, the qPCR containing LncRNA LINC01001, LncRNA LINC00265, LncRNA LINC00152, internal reference U6 draw Object, also containing reverse transcription reagents, qPCR reagents.LncRNA LINC01001、LncRNA LINC00265、LncRNA LINC00152, the qPCR primers of internal reference U6 are as shown in the table.
A kind of identification, which is distinguished, to be frozen umbilical cord mesenchymal stem cells in 1~June and freezes umbilical cord mesenchymal stem cells in 7~December Kit, containing hsa-miR-615-3p, hsa-miR-455-5p, hsa-miR-219b-3p, internal reference U6 qPCR primers, also Contain reverse transcription reagents, qPCR reagents.Hsa-miR-615-3p, hsa-miR-455-5p, hsa-miR-219b-3p, internal reference U6 QPCR primers it is as shown in the table.
A kind of identification, which is distinguished, to be frozen umbilical cord mesenchymal stem cells in 1~June and freezes umbilical cord mesenchymal stem cells in 7~December Kit, the qPCR containing hsa_circ_0012332, hsa_circ_0083703, hsa_circ_0023538, internal reference U6 draw Object, also containing reverse transcription reagents, qPCR reagents.hsa_circ_0012332、hsa_circ_0083703、hsa_circ_ 0023538th, the qPCR primers of internal reference U6 are as shown in the table.
Above-mentioned specific embodiment is only used for explaining technical scheme of the present invention, it will be appreciated by those skilled in the art that, this hair Bright protection domain is not limited to above-mentioned specific embodiment.

Claims (7)

1. a kind of identification mesenchymal stem cell based on Microrna freezes the gene detecting kit of time, feature exists In:QPCR primers including being used to measure hsa-miR-505-5p, hsa-miR-197-5p and hsa-miR-635 expression; The identification mesenchymal stem cell freeze the time refer to identification distinguish freeze mesenchymal stem cell in 1~June and freeze 7~ December mesenchymal stem cell.
2. gene detecting kit according to claim 1, it is characterised in that:The measure hsa-miR-505-5p, Hsa-miR-197-5p and hsa-miR-635 expressions, which refer to, measures hsa-miR-505-5p, hsa-miR-197-5p and hsa- MiR-635 relative to internal reference U6 relative expression levels.
3. gene detecting kit according to claim 2, it is characterised in that:
The qPCR sense primers of hsa-miR-505-5p are 5'-TGTCCTACGCCATGCGCATATAAAG-3';
The qPCR downstream primers of hsa-miR-505-5p are 5'-AGTAACTAAGCGGCAGATGAATGG-3'.
4. gene detecting kit according to claim 2, it is characterised in that:
The qPCR sense primers of hsa-miR-197-5p are 5'-TGTTTGACTTCACTGTGCCTCTGTTG-3';
The qPCR downstream primers of hsa-miR-197-5p are 5'-CACAATGGTTGTGGCTCGAACTGTG-3'.
5. gene detecting kit according to claim 2, it is characterised in that:
The qPCR sense primers of hsa-miR-635 are 5'-CTTCAAGACTAGAAAGTGACACCT-3';
The qPCR downstream primers of hsa-miR-635 are 5'-TGCGCTAGGGGCGAGCAGTAGTG-3'.
6. gene detecting kit according to claim 2, it is characterised in that:
The qPCR sense primers of internal reference U6 are 5'-TTTAGGCTTGCCTCTGTAGTA-3';
The qPCR downstream primers of internal reference U6 are 5'-GAACCCTGCCAGGTGATTTTG-3'.
7. according to any gene detecting kits of claim 1-6, it is characterised in that:Further include reverse transcription reagents and QPCR reagents etc..
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