CN108060114B - A kind of Escherichia coli of fermenting and producing l-Alanine and its application - Google Patents

A kind of Escherichia coli of fermenting and producing l-Alanine and its application Download PDF

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CN108060114B
CN108060114B CN201810033876.4A CN201810033876A CN108060114B CN 108060114 B CN108060114 B CN 108060114B CN 201810033876 A CN201810033876 A CN 201810033876A CN 108060114 B CN108060114 B CN 108060114B
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escherichia coli
alanine
asd
recombinant strain
aspa
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CN108060114A (en
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齐俊平
张帆
刘佳
刘立明
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Jinhua Li Li Biological Engineering Co Ltd
Jiangnan University
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Jinhua Li Li Biological Engineering Co Ltd
Jiangnan University
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    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N9/00Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
    • C12N9/88Lyases (4.)
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12PFERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIRED CHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERS FROM A RACEMIC MIXTURE
    • C12P13/00Preparation of nitrogen-containing organic compounds
    • C12P13/04Alpha- or beta- amino acids
    • C12P13/06Alanine; Leucine; Isoleucine; Serine; Homoserine
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12YENZYMES
    • C12Y401/00Carbon-carbon lyases (4.1)
    • C12Y401/01Carboxy-lyases (4.1.1)
    • C12Y401/01012Aspartate 4-decarboxylase (4.1.1.12)
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12YENZYMES
    • C12Y403/00Carbon-nitrogen lyases (4.3)
    • C12Y403/01Ammonia-lyases (4.3.1)
    • C12Y403/01001Aspartate ammonia-lyase (4.3.1.1), i.e. aspartase

Abstract

The invention discloses a kind of Escherichia coli of fermenting and producing l-Alanine and its applications, belong to technical field of bioengineering.The present invention can introduce Aspartase AspA and L-Aspartic acid-β-decarboxylase AsD in the Escherichia coli of fermenting and producing fumaric acid, the turn-over capacity of l-Alanine in further overexpression YgaW gene and strengthening recombinant bacterium, construct the new mushroom-seed culturing that can use glucose fermentation production l-Alanine, it is fermented in the fermenter 45h using the recombinant bacterial strain, l-Alanine yield reaches 147g/L, saccharic acid conversion ratio 79.0%.

Description

A kind of Escherichia coli of fermenting and producing l-Alanine and its application
Technical field
The present invention relates to a kind of Escherichia coli of fermenting and producing l-Alanine and its applications, belong to biotechnology neck Domain.
Background technique
L-Alanine is the highest amino acid of content in a kind of nonessential amino acid and blood of human body, in l-Alanine It is widely used in fields such as industry, daily use chemicals, food.In daily chemicals field, l-Alanine is the weight of synthesizing amino acid surfactant Raw material is wanted, in field of food, l-Alanine can be used as acid of the natural sweetener to the sense of taste and organic acid that improve flavoring agent.? Field of medicaments, l-Alanine are also the primary raw material for synthesizing vitamin B6 and aminopropanol.
The production technology of l-Alanine includes extraction method, chemical synthesis, enzyme catalysis method and fermentation method.Industrial production at present It is upper mainly to use enzyme catalysis method, i.e., by culture rich in the micro- life of L-Aspartic acid-β-decarboxylase AsD (EC4.1.1.12) vigor Object cell, catalysis L-Aspartic acid obtain l-Alanine.The characteristics of enzymatic conversion method technique is enzyme activity height, and equipment requirement is simple, Extraction process is simple, but wild-type microorganisms culture production AsD is needed using fumaric acid or sodium glutamate as carbon source, growth cycle Long and toxigenic capacity is high, while main raw material(s) L-Aspartic acid price is high, causes its high production cost.Xu You is strong etc. to be passed through Clone Origin has L- asparagus fern ammonia in the asD gene of Comamonas testosteroni (Comonas testosteroni), at one plant Heterogenous expression in the escherichia coli CICC11022S of sour enzyme (AspA) production capacity, building conversion fumaric acid produce the third ammonia of L- The recombination engineering of acid, recombinant bacterium 9h convert the l-Alanine that fumaric acid generates 112.7g/L, conversion ratio 93.8%.This method with Big Escherichia coli is bacteria enzyme source strain and fumaric acid is substrate, and the cost of material of production significantly reduces, but fumaric acid It is to be produced through petroleum refining, price locks into crude oil price, while petroleum resources are increasingly short and non-renewable.Zhang Xueli 5 competition approach of key that l-Alanine synthesizes, overexpression rate-limiting step enzyme the third ammonia of L- are deleted Deng using genetic engineering means Acidohydrogenase strengthens production path of the pyruvic acid to l-Alanine, constructs Escherichia coli recombinant strain, using glucose as raw material, from Water prepares culture medium, and fermentation 48h can produce 114g/L l-Alanine.Fermentation raw material glucose is cheap and easy to get, culture medium at Divide simply, anaerobic fermentation power consumption is low, and product yield is high.The construction method of building l-Alanine production bacterial strain is single at present, It is related to a plurality of contended path, genetic engineering is complicated for operation.
Summary of the invention
To solve the above-mentioned problems, the present invention produces fumaric acid by Escherichia coli fermentation, utilizes Aspartase AspA It is converted into aspartic acid, further produces l-Alanine, building using L-Aspartic acid-β-decarboxylase AsD conversion aspartic acid The new mushroom-seed culturing of efficient production l-Alanine.
The first purpose of the invention is to provide a kind of Escherichia coli recombinant strain, the Escherichia coli recombinant strain be by It can produce in the Escherichia coli of fumaric acid, be overexpressed Aspartase AspA and L-Aspartic acid-β-decarboxylase AsD.
In one embodiment of the invention, the Aspartase AspA and L-Aspartic acid-β-decarboxylase AsD is logical Nucleotide sequence RBS1 as shown in SEQ ID NO.4 is crossed to be connected.
In one embodiment of the invention, the nucleotide sequence of the Aspartase AspA encoding gene aspA is such as Shown in SEQ ID NO.1, the L-Aspartic acid-β-decarboxylase AsD encoding gene asD nucleotide sequence such as SEQ ID Shown in NO.2.
In one embodiment of the invention, the Escherichia coli for producing fumaric acid are Escherichia coli CICC.23846.
In one embodiment of the invention, pass through Aspartase AspA and L- described in pEtac plasmid expressing in series Aspartic acid-beta-decarboxylase AsD.
In one embodiment of the invention, the Escherichia coli recombinant strain is encoded in l-Alanine transport protein AlaE Gene YgaW upstream integration constitutive promoter J23119.
In one embodiment of the invention, the nucleotide of the l-Alanine transport protein AlaE encoding gene YgaW Sequence is as shown in SEQ ID NO.3.
A second object of the present invention is to provide the construction method of the Escherichia coli recombinant strain, the method is specifically:
(1) pEtac plasmid is used, using nucleotide sequence RBS1 as shown in SEQ ID NO.4 as link peptide, table of connecting Up to nucleotide sequence Aspartase AspA as shown in SEQ ID NO.1 and nucleotide sequence as shown in SEQ ID NO.2 L-Aspartic acid-β-decarboxylase AsD, construction recombination plasmid pETac-aspA-asD;
(2) recombinant plasmid pETac-aspA-asD is imported in Escherichia coli CICC.23846;
(3) in nucleotide sequence the l-Alanine transport protein AlaE upstream region of gene as shown in SEQ ID NO.3 from integration In constitutive promoter J23119, then recombinant bacterium described in steps for importing (2), recombination bacillus coli E.coli P-119 is obtained.
Third purpose of the present invention is to provide a kind of utilization recombination bacillus coli E.coli P-119 fermenting and producing L- The method of alanine, the method are specifically: 3~5% inoculum concentration of shake-flask seed is inoculated in fermentation medium, dilute sulfuric acid and ammonia Water management pH 34~36 DEG C of temperature, stirs 80~120rpm, when OD600 reaches 10 in 6.8~7.2,0.1~1vvm of ventilatory capacity When~15,2~3g/L lactose induction Aspartase is added and the expression of L-Aspartic acid-β-decarboxylase, fermentation process work as Portugal When grape sugar concentration is lower than 10~15g/L, 500~700g/L glucose solution is added, every liter of fermentation liquid adds 20~40g grape Sugar is added 2~6 times altogether, terminates fermentation after glucose consumption is most.
In one embodiment of the present invention, fermentation medium components are as follows: 60~80g/L of initial glucose, yeast powder 4~ 6g/L, tryptone 1~3g/L, (NH4)2SO41~3g/L, K2HPO4·12H2O 3~5g/L, KH2PO43~5g/L, MgSO4·7H2O0.4~0.6g/L, monohydrate potassium 0.2~0.4g/L, MnCl2·4H20.06~0.1g/L of O.
Fourth object of the present invention is to provide application of the Escherichia coli recombinant strain in production l-Alanine.
Usefulness of the present invention:
For Escherichia coli as most common cell factory, genetic background is clear, in the large intestine for capableing of fermenting and producing fumaric acid Aspartase AspA and L-Aspartic acid-β-decarboxylase AsD is introduced in bacillus, and the fumaric acid of fermenting and producing is converted into L-Alanine, further overexpression AlaE enhance the turn-over capacity of l-Alanine in recombinant bacterium, construct can use it is honest and clean Valence glucose fermentation produces the superior strain of l-Alanine, and the production path there is no relevant report at present at present.
Detailed description of the invention
The building of Fig. 1: pEtac-aspA-asD co-expression plasmid.
Specific embodiment
It is all using routine experiment method, implementing material can obtain from commercial channels in following embodiments.
In following embodiments, escherichia coli (Escherichia coli) is starting strain, is purchased from CICC, number 23846, the Escherichia coli of fumaric acid can be produced by being also applied for other.
Amino acid detection is using conventional high performance liquid chromatography detection.
Aspartase AspA Enzyme activity assay: fumaric acid ammonium hydroxide (pH=8.5) solution for being about 180g/L by 27mL concentration 37 DEG C of preheatings, weigh the wet thallus of 0.5g or so in 250mL conical flask respectively, and 0.09gCTAB powder and 2.5mL ion is added Water is added in the conversion fluid of preheating, and preservative film sealing is placed on 37 DEG C, reacts 15min in the shaking table of 200rpm.Reaction is completed Afterwards, appropriate reaction solution rapid centrifugation dilution is taken to carry out liquid phase detection.
L-Aspartic acid-β-decarboxylase AsD Enzyme activity assay: the aspartic acid solution that 15mL concentration is 30g/L (is used into hydrogen-oxygen Change sodium solution and adjust pH 7.0) 37 DEG C of preheatings, the wet thallus of 1g or so induction 12h is weighed respectively in 250mL conical flask, is added 0.09g CTAB powder and 14mL deionized water, be added in the conversion fluid of preheating, and preservative film sealing is placed on 37 DEG C, 200rpm 15min is reacted in shaking table.After the reaction was completed, appropriate reaction solution rapid centrifugation dilution is taken to carry out liquid phase detection.
Enzyme activity unit (U): enzyme amount required for 1 μm of oL product of production is defined as 1 enzyme-activity unit per minute.
Glucose assays method: divided using SBA-40 bio-sensing analyzer (Shandong Province academy sciences Biology Research Institute) Analysis.
Produce the calculating of intensity: production intensity (g/L/h)=l-Alanine yield (g/L)/fermentation time (h).
Embodiment 1: the building of double enzyme coexpression bacterial strains
(1) genome of e. coli k12 and Comamonas testosteroni is extracted using bacterial genomes extracts kit DNA;
(2) it is cloned from genome of E.coli DNA using primer AspA-up and AspA-down in table 1 and obtains aspA base Cause is connected to expression vector pETac using SacI and NotI double digestion, obtains pETac-aspA;
(3) according to RBS intensity and the linear relationship of institute's modulin expression quantity statistically, design RBS1, RBS2, RBS3, RBS4 adjust the expression intensity of two enzymes, use primer AsD-up1 and AsD-down, AsD-up2 and AsD-down, AsD- Up3 and AsD-down, AsD-up4 and AsD-down are cloned from the genomic DNA of Comamonas testosteroni and are obtained asD base Cause;
(4) after the 4 sections of asD gene sequencing obtained above-mentioned clone are correct, using HindIII and NotI double digestion, respectively It is connected to pETac-aspA plasmid and obtains pETac-aspA-asD (such as Fig. 1), plasmid thermal shock is converted in escherichia coli CICC23846 obtains recombinant bacterial strain E.coli PAD;
(6) above-mentioned 4 plants of engineered strains use LB culture medium (100mg/L kanamycin sulfate), 35 DEG C of culture 10h, according to 4% inoculum concentration is inoculated in Medium of shaking flask fermentation, and 2g/L lactose is added when OD600=2.0, continues to cultivate, when glucose disappears End fermentation is exhausted, l-Alanine yield in centrifugation detection supernatant collects bacterium mud and detects enzyme activity;
Fermentation medium components: initial glucose 60g/L, yeast powder 3g/L, tryptone 1g/L, (NH4)2SO42g/L, K2HPO4·12H2O 4g/L, KH2PO44g/L, MgSO4·7H2O 0.5g/L, monohydrate potassium 0.3g/L, MnCl2· 4H2O0.08g/L。
(7) l-Alanine yield and Enzyme activity assay such as result such as table 2 are RBS1 between two genes under same culture conditions L-Alanine yield is up to 37.6g/L when sequence, and AspA and AsD enzyme activity are respectively 301U/g and 478U/g when fermentation ends.
The building of 1 co-expression plasmid of table uses primer
2 recombinant bacterium fermenting and producing l-Alanine of table
Embodiment 2: the building of L-alanine with high yield Escherichia coli
Constitutive promoter J23119 is added in YgaW genomic upstream using the principle of Red homologous recombination (BBa23119), strengthen AlaE protein expression, l-Alanine is promoted to be converted by intracellular to extracellular.
(1) homologous recombination primer (such as table 3) is designed using software Primer Premier 5, is to draw with Kan-S, Kan-A Object, pKD4 are template, expand kan gene, and using YgaW-S, YgaW-A as primer, e. coli k12 genome is template, amplification YgaW gene obtains Kan+YgaW segment using fusion DNA vaccine, is connected to PMD19 and carries out gene sequencing;
(2) using 119-S and YgaW-A as primer, the PMD19 plasmid that correct Kan+YgaW segment is sequenced in connection is template, PCR obtains having the knockout frame of homology arm, J23119 promoter, Kan gene;
(3) pKD46 plasmid is imported in Escherichia coli CICC 23846, prepares electrocompetent cell, frame piece will be knocked out Section is electroporated to carry out homologous recombination in competent cell, and screening obtains the positive colony bacterial strain with kan resistance;
(4) with making its lose pKD46 plasmid after 43 DEG C of positive colony bacterial strain of kan resistance cultures, prepare electric-shock feeling by State cell, electroporated plasmid pCP20.Conversion fluid is coated on the LB plate containing ampicillin, 30 DEG C of culture 12h, screening Positive transformant.
(5) transformant is transferred to the recombination of 43 DEG C of cultures 12h screening ampicillins and kalamycin resistance while missing again Bacterium, J23119 promoter successful integration, imports co-expression plasmid pETac-aspA-asD (RBS1) is constructed in embodiment 1 at this time Recombinant bacterium obtains l-Alanine production bacterial strain E.coli P-119
(6) above-mentioned engineered strain E.coli PAD RBS1 and E.coli P-119 is trained in the way of in embodiment 1 It supports, fermentation ends detect l-Alanine content in fermentation liquid, and ferment 48h, and E.coli P-119 produces l-Alanine 49.8g/L, 37.6g/L compared to E.coli PAD RBS1 improves 32.4%.
The gene constructed J23119 promoter of table 3YgaW uses primer
Embodiment 3:E.coli P-119 fermenting and producing l-Alanine
Seed culture based component: yeast powder 5g/L, peptone 10g/L, NaCl 5.0g/L, MgSO4·7H2O 1.0g/L。
Fermentation medium components: initial glucose 70g/L, yeast powder 5g/L, tryptone 2g/L, (NH4)2SO42g/L, K2HPO4·12H2O 4g/L, KH2PO44g/L, MgSO4·7H2O 0.5g/L, monohydrate potassium 0.3g/L, MnCl2· 4H2O0.08g/L。
It is inoculated in seed culture medium from the appropriate E.coli P-119 of inclined-plane picking, 35 DEG C, 200rpm shaken cultivation 10~ 12h, shake-flask seed are inoculated in fermentor according to 10% inoculum concentration, in 5L fermentor culture medium liquid amount be 3L, dilute sulfuric acid and Ammonium hydroxide control fermentation pH is 6.8~7.2, ventilatory capacity 0.5vvm, 35 DEG C of temperature, 100rpm is stirred, when OD600 reaches 25~30 When, 2g/L lactose induction Aspartase and aspartic acid-beta-decarboxylation expression of enzymes is added, when concentration of glucose is lower than 10~15g/ When L, 600g/L glucose solution is added, every liter of fermentation liquid adds 60g glucose, adds altogether 2 times, ties after glucose consumption is most Beam fermentation.
As a result: fermentation 45h, l-Alanine yield reach 122.0g/L, saccharic acid conversion ratio 64.2%.
Embodiment 4: recombinant bacterial strain E.coli Δ 5D2 fermenting and producing l-Alanine
Seed culture based component: yeast powder 5g/L, peptone 10g/L, NaCl 5.0g/L, MgSO4·7H2O 1.0g/L。
Fermentation medium components: initial glucose 70g/L, yeast powder 5g/L, tryptone 2g/L, (NH4)2SO42g/L, K2HPO4·12H2O 4g/L, KH2PO44g/L, MgSO4·7H2O 0.5g/L, monohydrate potassium 0.3g/L, MnCl2· 4H2O0.08g/L。
It is inoculated in seed culture medium from the appropriate E.coli P-119 of inclined-plane picking, 35 DEG C, 200rpm shaken cultivation 10~ 12h, shake-flask seed are inoculated in fermentor according to 4% inoculum concentration, and culture medium liquid amount is 3L, dilute sulfuric acid and ammonia in 5L fermentor Water management ferments pH for 6.8~7.2, ventilatory capacity 0.5vvm, 35 DEG C of temperature, stirs 100rpm, when OD600 reaches 10~15, 2g/L lactose induction Aspartase and aspartic acid-beta-decarboxylation expression of enzymes is added, when concentration of glucose is lower than 10~15g/L When, 600g/L glucose solution is added, every liter of fermentation liquid adds 30g glucose, adds altogether 4 times, ties after glucose consumption is most Beam fermentation.
As a result: fermentation 45h, l-Alanine yield reach 147g/L, and saccharic acid conversion ratio 79.0% realizes the height of l-Alanine Effect production.
Although the present invention has been described by way of example and in terms of the preferred embodiments, it is not intended to limit the invention, any to be familiar with this skill The people of art can do various change and modification, therefore protection model of the invention without departing from the spirit and scope of the present invention Enclosing subject to the definition of the claims.
Sequence table
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<211> 55
<212> DNA
<213>artificial sequence
<400> 13
gctagcatta tacctaggac tgagctagct gtcaacatat gaatatcctc cttag 55
<210> 14
<211> 80
<212> DNA
<213>artificial sequence
<400> 14
ttgacagcta gctcagtcct aggtataatg ctagcgaatt cattaaagag gagaaaggta 60
ccatgttctc accgcagtca 80
<210> 15
<211> 19
<212> DNA
<213>artificial sequence
<400> 15
tcaggctttt acctgctgg 19
<210> 16
<211> 24
<212> DNA
<213>artificial sequence
<400> 16
catctccatt aacatcccat tacg 24

Claims (7)

1. a kind of Escherichia coli recombinant strain, which is characterized in that the Escherichia coli recombinant strain is by that can produce fumaric acid In Escherichia coli, it is overexpressed Aspartase AspA and L-Aspartic acid-β-decarboxylase AsD;The Aspartase AspA and L-Aspartic acid-β-decarboxylase AsD is connected by nucleotide sequence RBS1 as shown in SEQ ID NO.4;Pass through pEtac matter Aspartase AspA and L-Aspartic acid-β-decarboxylase AsD described in grain expressing in series;The Escherichia coli recombinant strain is in L- third Propylhomoserin transport protein AlaE encoding gene YgaW upstream integration constitutive promoter J23119.
2. Escherichia coli recombinant strain according to claim 1, which is characterized in that the Aspartase AspA encoding gene The nucleotide sequence of aspA is as shown in SEQ ID NO.1, the L-Aspartic acid-β-decarboxylase AsD encoding gene asD nucleosides Acid sequence is as shown in SEQ ID NO.2.
3. Escherichia coli recombinant strain according to claim 1, which is characterized in that the Escherichia coli for producing fumaric acid are big Enterobacteria CICC.23846.
4. Escherichia coli recombinant strain according to claim 1, which is characterized in that the l-Alanine transport protein AlaE is compiled The nucleotide sequence of code gene YgaW is as shown in SEQ ID NO.3.
5. a kind of method using Escherichia coli recombinant strain fermenting and producing l-Alanine described in claim 1, which is characterized in that The method is specifically: 3~5% inoculum concentration of shake-flask seed being inoculated in fermentation medium, dilute sulfuric acid and ammonium hydroxide control pH are 6.8 ~7.2,0.1~1vvm of ventilatory capacity, stir 80~120rpm by 34~36 DEG C of temperature, when OD600 reaches 10~15, addition 2~ 3g/L lactose induces Aspartase and the expression of L-Aspartic acid-β-decarboxylase, and fermentation process is lower than 10 when concentration of glucose When~15g/L, 500~700g/L glucose solution is added, every liter of fermentation liquid adds 20~40g glucose, it adds altogether 2~6 times, Terminate fermentation after glucose consumption is most.
6. according to the method described in claim 5, it is characterized in that, fermentation medium components are as follows: 60~80g/ of initial glucose L, 4~6g/L of yeast powder, tryptone 1~3g/L, (NH4)2SO41~3g/L, K2HPO4·12H2O 3~5g/L, KH2PO4 3 ~5g/L, MgSO4·7H20.4~0.6g/L of O, monohydrate potassium 0.2~0.4g/L, MnCl2·4H20.06~0.1g/ of O L。
7. application of the Escherichia coli recombinant strain described in claim 1 in production l-Alanine.
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