CN108038353A - A kind of web page display method of genomic data - Google Patents
A kind of web page display method of genomic data Download PDFInfo
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- CN108038353A CN108038353A CN201711433665.1A CN201711433665A CN108038353A CN 108038353 A CN108038353 A CN 108038353A CN 201711433665 A CN201711433665 A CN 201711433665A CN 108038353 A CN108038353 A CN 108038353A
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- genomic data
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- G—PHYSICS
- G06—COMPUTING; CALCULATING OR COUNTING
- G06F—ELECTRIC DIGITAL DATA PROCESSING
- G06F16/00—Information retrieval; Database structures therefor; File system structures therefor
- G06F16/20—Information retrieval; Database structures therefor; File system structures therefor of structured data, e.g. relational data
- G06F16/28—Databases characterised by their database models, e.g. relational or object models
- G06F16/284—Relational databases
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- G—PHYSICS
- G06—COMPUTING; CALCULATING OR COUNTING
- G06F—ELECTRIC DIGITAL DATA PROCESSING
- G06F16/00—Information retrieval; Database structures therefor; File system structures therefor
- G06F16/90—Details of database functions independent of the retrieved data types
- G06F16/95—Retrieval from the web
- G06F16/957—Browsing optimisation, e.g. caching or content distillation
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- G—PHYSICS
- G06—COMPUTING; CALCULATING OR COUNTING
- G06F—ELECTRIC DIGITAL DATA PROCESSING
- G06F8/00—Arrangements for software engineering
- G06F8/30—Creation or generation of source code
- G06F8/31—Programming languages or programming paradigms
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- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B45/00—ICT specially adapted for bioinformatics-related data visualisation, e.g. displaying of maps or networks
Abstract
The invention discloses a kind of web page display method of genomic data, stores genomic data using Apache as server software and using data base management system first；The access request of user is received secondly by perl language and the inquiry to the genomic data is completed from the data base management system；Finally adjust javascript that the query result of the genomic data is carried out patterned displaying on webpage.Above-mentioned technical proposal disclosed in the present application, so that the information of genomic data becomes more to visualize, obscure biological question is become an intuitively figure, so that researcher can be calmly analysis the genomic data of oneself, more deep slave inhereditary material is started with, more fully understand project, realize the visualization of genome.
Description
Technical field
The present invention relates to genome to show field, more specifically to a kind of web page display method of genomic data.
Background technology
From after the Human Genome Project, the genome plan such as various animals, plant, microorganism and virus obtains in succession
Success.With the completion of genome plan, substantial amounts of post-genomic science flourishes, scientific research personnel to the sequence of genome into
Research, annotation are gone, have laid a good foundation for the research and development of functional genomics, proteomics, metabolism group.However,
Genomic data after annotation is existed in a manner of text, be not easy to displaying researcher to genome research into
Fruit, and the structure of genome is extremely complex, including sequence and sequence alignment information, gene and predictive genes information, courier
Ribonucleic acid information, the information of EST, expression regulation information, icp gene group information, structure variation information etc..Such as
These information are showed numerous researchers to become the essential and difficult link of genome research by what in friendly way.
At present, the instrument in terms of genome visualization is all installation and configuration difficulty is of a relatively high or there are the soft of more loophole
The visualization of genome is completed in part, most of laboratories in which can not be successfully.
Therefore, how these mass datas are preferably used, is those skilled in the art to realize the visualization of genome
Problem to be solved.
The content of the invention
It is an object of the invention to provide a kind of web page display method of genomic data, to solve base in existing industry
The problem of not enough being visualized because of a group data.
To achieve the above object, an embodiment of the present invention provides following technical solution：
A kind of web page display method of genomic data, including：
Genomic data is stored using Apache as server software and using data base management system；
The access request of user is received by perl language and is completed from the data base management system to the gene
The inquiry of group data；
Call javascript that the query result of the genomic data is carried out patterned displaying on webpage.
Wherein, using Apache as server software and using data base management system storage genomic data, including：
Collector after the installation kit of Apache is downloaded, and set；
The genomic data is stored in mysql Relational DBMSs, install mysql clients and
Mysql server ends simultaneously start mysql services, and starting up simultaneously checks whether starting up sets success, if starting up sets
Work(is set to, then is stopped.
Wherein, the access request of user is received by perl language and is completed from the data base management system to described
The inquiry of genomic data, including：
Perl modules, quick for perl script perform, and install the perl modules；
GD storehouses, for handling the expanding library of figure, are installed and configured and complete the GD storehouses.
Wherein, the calling javascript carries out on webpage the query result of the genomic data patterned
Displaying, further includes：
Utilize the web interface for being combined as the patterned displaying of HTML and CSS.
Wherein, the network operating system of multi-user is used as by the use of Linux.
A kind of web page display device of genomic data, including：
Memory module, for storing genome number using Apache as server software and using data base management system
According to；
Enquiry module, it is for the access request by perl language reception user and complete from the data base management system
The inquiry of the paired genomic data；
Display module, for calling javascript that the query result of the genomic data is carried out figure on webpage
The displaying of change.
A kind of genomic data device, including：
Memory, for storing genomic data；
Processor, a kind of genome as described in any one of claim 1 to 5 is realized during for performing the genomic data
The step of web page display method of data.
By above scheme, a kind of web page display method of genomic data provided in an embodiment of the present invention will
Apache stores genomic data as server software and using data base management system；Receive user's by perl language
Access request simultaneously completes the inquiry to the genomic data from the data base management system；Javascript is adjusted by described in
The query result of genomic data carries out patterned displaying on webpage.
It can be seen from the above that a kind of web page display method of genomic data provided in an embodiment of the present invention, first according to demand
Configuration server environment is installed, effectively using data base management system storage genomic data, and according to the customization need of user
Inquiry, access, renewal, management genomic data are asked, perl language this feature-rich computer programming language is employed, leads to
Cross and call this literal translation formula script of javascript that the query result of the genomic data is carried out figure on webpage
The Dynamic Display of change.So that the information of genomic data becomes more to visualize, obscure biological question is become
One intuitively figure, so that researcher can be calmly the analysis genomic data of oneself, more deep from something lost
Pass material to start with, more fully understand project, realize the visualization of genome.
Brief description of the drawings
In order to illustrate more clearly about the embodiment of the present invention or technical scheme of the prior art, below will be to embodiment or existing
There is attached drawing needed in technology description to be briefly described, it should be apparent that, drawings in the following description are only this
Some embodiments of invention, for those of ordinary skill in the art, without creative efforts, can be with
Other attached drawings are obtained according to these attached drawings.
Fig. 1 is a kind of web page display method flow diagram of genomic data disclosed by the embodiments of the present invention；
Fig. 2 is a kind of web page display apparatus structure schematic diagram of genomic data disclosed by the embodiments of the present invention；
Fig. 3 is a kind of genomic data apparatus structure schematic diagram disclosed by the embodiments of the present invention.
Embodiment
Below in conjunction with the attached drawing in the embodiment of the present invention, the technical solution in the embodiment of the present invention is carried out clear, complete
Site preparation describes, it is clear that described embodiment is only part of the embodiment of the present invention, instead of all the embodiments.It is based on
Embodiment in the present invention, those of ordinary skill in the art are obtained every other without creative efforts
Embodiment, belongs to the scope of protection of the invention.The embodiment of the invention discloses a kind of web page display method of genomic data,
To realize the visualization of genome.
Referring to Fig. 1, a kind of web page display method of genomic data provided in an embodiment of the present invention, specifically includes：
S101, genomic data is stored using Apache as server software and using data base management system；
Specifically, configuration server environment is installed according to demand first, downloads collector after Apache installation kits, then
Set, the client and server end of mysql are then installed, start mysql services, starting up simultaneously checks out
Machine starts whether set success, if starting up is set successfully, stops.
S102, receives the access request of user by perl language and is completed from the data base management system to described
The inquiry of genomic data；
Specifically, perl modules and GD storehouses are installed, GD storehouses are to produce the component that image must have, and GD storehouses are also required to it in itself
His many components, any component has been the absence of, it is necessary to first install those components again if the failure of installation GD storehouses, it is necessary to check
GD storehouses are installed.
S103, calls javascript that the query result of the genomic data is carried out patterned exhibition on webpage
Show.
By above scheme, a kind of web page display method of genomic data provided in an embodiment of the present invention, first
Configuration server environment is installed according to demand, effectively using data base management system storage genomic data, and according to user
Customized demand inquiry, access, renewal, management genomic data, employ perl language this feature-rich computer journey
Sequence language, by calling this literal translation formula script of javascript by the query result of the genomic data on webpage
The Dynamic Display being patterned.So that the information of genomic data becomes more to visualize, the visualization of genome is realized.
Below to a kind of web page display device of genomic data provided in an embodiment of the present invention, a kind of base described below
The web page display method of web page display device and a kind of above-described genomic data because of group data can be cross-referenced.
With reference to figure 2, a kind of web page display device of genomic data provided in an embodiment of the present invention, specifically includes：
Memory module, for storing genome number using Apache as server software and using data base management system
According to；
Specifically, memory module 201 stores genomic data first, such as：Centromere, gene, extron, introne,
Genome G/C content, various genomic markers, with the relevant SNP data of disease etc..
Enquiry module 202, for receiving the access request of user by perl language and from the data base management system
Inquiry of the middle completion to the genomic data；
Display module 203, for calling javascript to carry out on webpage the query result of the genomic data
Patterned displaying.
Specifically, display module 203 using HTML and CSS the web interface for being combined as graphical representation.
By above scheme, a kind of web page display device of genomic data provided in an embodiment of the present invention, utilizes
Memory module, genomic data is stored using Apache as server software and using data base management system；Using inquiring about mould
Block, receives the access request of user by perl language and is completed from the data base management system to the genomic data
Inquiry；Using display module, for calling javascript to carry out on webpage the query result of the genomic data
Patterned displaying.So that the information of genomic data becomes more to visualize, the visualization of genome is realized.
A kind of genomic data device provided in an embodiment of the present invention is introduced below, a kind of gene described below
The web page display method of group data set and a kind of above-described genomic data can be cross-referenced.
With reference to figure 3, a kind of genomic data device provided in an embodiment of the present invention, specifically includes：
Memory 301, for storing genomic data；
Processor 302, a kind of genomic data as described in above-described embodiment is realized during for performing the genomic data
Web page display method the step of.
Each embodiment is described by the way of progressive in this specification, what each embodiment stressed be and other
The difference of embodiment, between each embodiment identical similar portion mutually referring to.
The foregoing description of the disclosed embodiments, enables professional and technical personnel in the field to realize or use the present invention.
A variety of modifications to these embodiments will be apparent for those skilled in the art, as defined herein
General Principle can be realized in other embodiments without departing from the spirit or scope of the present invention.Therefore, it is of the invention
The embodiments shown herein is not intended to be limited to, and is to fit to and the principles and novel features disclosed herein phase one
The most wide scope caused.
Claims (7)
1. a kind of web page display method of genomic data, it is characterised in that including：
Genomic data is stored using Apache as server software and using data base management system；
The access request of user is received by perl language and is completed from the data base management system to the genome number
According to inquiry；
Call javascript that the query result of the genomic data is carried out patterned displaying on webpage.
2. according to the method described in claim 1, it is characterized in that, Apache as server software and is utilized into data depositary management
Reason system stores genomic data, including：
Collector after the installation kit of Apache is downloaded, and set；
The genomic data is stored in mysql Relational DBMSs, install mysql clients and
Mysql server ends simultaneously start mysql services, and starting up simultaneously checks whether starting up sets success, if starting up sets
Work(is set to, then is stopped.
3. according to the method described in claim 1, it is characterized in that, the access request of user is received and from institute by perl language
The inquiry completed in data base management system to the genomic data is stated, including：
Perl modules, quick for perl script perform, and install the perl modules；
GD storehouses, for handling the expanding library of figure, are installed and configured and complete the GD storehouses.
4. according to the method described in claim 1, it is characterized in that, the calling javascript is by the genomic data
Query result carries out patterned displaying on webpage, further includes：
Utilize the web interface for being combined as the patterned displaying of HTML and CSS.
5. according to the method described in claim 1, it is characterized in that, the network operating system of multi-user is used as by the use of Linux.
A kind of 6. web page display device of genomic data, it is characterised in that including：
Memory module, for storing genomic data using Apache as server software and using data base management system；
Enquiry module, for receiving the access request of user and the completion pair from the data base management system by perl language
The inquiry of the genomic data；
Display module, it is patterned for calling javascript to carry out on webpage the query result of the genomic data
Displaying.
A kind of 7. genomic data device, it is characterised in that including：
Memory, for storing genomic data；
Processor, a kind of genomic data as described in any one of claim 1 to 5 is realized during for performing the genomic data
Web page display method the step of.
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| CN110489583A (en) * | 2019-08-22 | 2019-11-22 | 南京信易达计算技术有限公司 | A kind of life sciences analytical graphical system and method based on Web |
| CN110993033A (en) * | 2019-11-14 | 2020-04-10 | 北京诺禾致源科技股份有限公司 | Method, system and device for processing genome data |
| CN111161804A (en) * | 2019-12-27 | 2020-05-15 | 北京百迈客生物科技有限公司 | Query method and system for species genomics database |
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| CN111161804A (en) * | 2019-12-27 | 2020-05-15 | 北京百迈客生物科技有限公司 | Query method and system for species genomics database |
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Effective date of registration: 20200526 Address after: Room 534, No. 25, Lane 3399, Kangxin Road, Pudong New District, Shanghai 200000 Applicant after: Shanghai Wickham Biomedical Technology Co.,Ltd. Address before: 400000 38 5, 5 office building, 1 Olympic road, Jiulongpo District, Chongqing. Applicant before: CHONGQING BIOOGENE BIOTECHNOLOGY Co.,Ltd. |
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