CN107723280B - Baltic Sea Shewanella bacteriophage SppYZU01 and application thereof - Google Patents

Baltic Sea Shewanella bacteriophage SppYZU01 and application thereof Download PDF

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CN107723280B
CN107723280B CN201711103751.6A CN201711103751A CN107723280B CN 107723280 B CN107723280 B CN 107723280B CN 201711103751 A CN201711103751 A CN 201711103751A CN 107723280 B CN107723280 B CN 107723280B
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sppyzu01
shewanella
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CN107723280A (en
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杨振泉
张辉
高璐
饶胜其
陶晓雅
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Yangzhou University
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Abstract

The present invention relates to the Baltic Sea Shewanella bacteriophage SppYZU01 described in a kind of Baltic Sea Shewanella bacteriophage SppYZU01 and application thereof, deposit number CCTCC NO:M 2016715.The bacteriophage has the lytic activity of broad-spectrum high efficacy, culture and its suspension is able to suppress the growth of Shewanella and biofilm is formed to Baltic Sea Shewanella.

Description

Baltic Sea Shewanella bacteriophage SppYZU01 and application thereof
Technical field
The present invention relates to a kind of Baltic Sea Shewanella bacteriophage separation strains SppYZU01 and its applications, belong to biological work Journey field.
Background technique
Baltic Sea Shewanella (Shewanella baltica) is the main thermophilic cold corruption in aquatic products and meat products Bacterium grows fastly under the conditions of cryopreservation (0-5 DEG C), and corrupt ability is strong, ultimately forms the dominant microflora in decay process, and produce The metabolins such as raw histamine, sulphur, indoles, aldehyde, trimethylamine, lead to the deterioration of organoleptic quality, cause sternly to aquatic products and packing industry The economic loss of weight.The breeding and cross contamination for effectively inhibiting this kind of bacterium are to maintain low temperature aquatic products and meat products freshness, prolong The important means of long shelf life.Conventional bacteriostatic agent currently used for putrefactivebacteria growth in control food mainly has chemical preservation Agent, in recent years for food-safe and preservative demand, people utilize extracted from animals and plants, microorganism to human body Safe and harmless natural component mainly includes allicin, tea polyphenols, lysozyme, nisin etc. as biological bacteriostatic agent. Though these bacteriostatic agents are able to satisfy the food-safe demand of customer, that there are fresh-keeping effects in low temperature environment is bad, is prepared into This height changes the defects of color and flavor of food.In addition, Shewanella is during reform of nature ambient growth, food, The surface of processing apparatus forms biofilm, and the bacterium in envelope improves the resistivity of conventional antistaling agent, bacteriostatic agent hundreds of Times, it is difficult to be removed, so as to cause lasting contact scar, to aquatic products and meat products processing and fresh-keeping brings serious harm.Therefore It needs to develop new bio-preservative and bacteriostatic agent.
Bacteriophage is the virus of a kind of bacterium dependence, also known as bacterial virus.It, can be after lytic phage bacterial infection Fast breeding in host strain, and be allowed to crack, therefore also known as virulent phage.Bacteriophage is widely present in nature, and right Host strain has specificity, and preparation cost is cheap.
Summary of the invention
There is fine melt effect to bite Baltic Sea Shewanella the technical problem to be solved in the present invention is to provide a kind of Thallus isolate or preparation.
A kind of Baltic Sea Shewanella bacteriophage (Shewanella baltica phage) of the present invention is SppYZU01, deposit number are CCTCC NO:M 2016715.
Invention further provides the bacteriophages to prepare the application in bacteriostatic agent.
It is point with the bacteriophage SppYZU01 the present invention also provides a kind of Baltic Sea Shewanella bacteriostatic agent From object or culture as bacteriostatic agent ingredient.
The present invention isolates one plant of Baltic Sea Shewanella bacteriophage from the sewage sample that the market of farm produce acquires SppYZU01 (Shewanella baltica phage SppYZU01) is preserved in China typical culture collection center (referred to as CCTCC), preservation address: Wuhan Wuhan University;Deposit number: CCTCC NO:M 2016715;Preservation date: December 2 in 2016 Day.
Baltic Sea Shewanella bacteriophage SppYZU01 in the present invention has following biological property:
(1) morphological feature: by transmission electron microscope observing, head is symmetrical, and diameter is about 55nm, and tail length is about 160nm, tool There is retractility caudal sheath, morphological feature is attributed to Myoviridae.
(2) bacteriophage nucleic acid type: bacteriophage dsDNA.
(3) phage genome feature: SppYZU01 full-length genome is 43567bp, wherein encoding gene total length point Not Wei 40884bp, average length 834bp, account for the 93.84% of overall length, G/C content is respectively 55.72%, has 49 openings to read Frame (ORFs).There are 12 ORFs not find homologous genes in the database in 49 ORFs coding albumen of SppYZU01, The albumen of 37 ORFs coding finds homology sequence, including 25 hypothesis albumen (hypothetical protein), With the sequence of 12 known protein functions.There is no the full bases of Baltic Sea Shewanella bacteriophage in Genbank database Because of group sequence and related gene, data show that SppYZU01 is one plant of new bacteriophage.
(4) there is strong Baltic Sea Shewanella cracking performance.
(5) Baltic Sea Shewanella biofilm is able to suppress to be formed.
Above-mentioned Baltic Sea Shewanella bacteriophage SppYZU01 is prepared into a kind of Shewanella bacteriophage by the present invention Bacteriostatic agent.100 μ of Baltic Sea Shewanella liquid of 100 μ L SppYZU01 phagocytosis body fluid Yu corresponding logarithmic phase growth period is taken respectively L mixing, is placed at room temperature for 10min, is then added in 10mL LB liquid medium, 25 DEG C, 150rpm constant temperature oscillation is incubated overnight; Culture in test tube is gone in sterile centrifugation tube, supernatant is collected after centrifugation through 5000 × g, 10min, it is micro- by 0.22 μm Hole membrane filtration degerming, obtains bacteriophage multiplication liquid.0.93g PEG 8000,0.58g NaCl is added to shake up to dissolution, 4 DEG C of mistakes Night;10000 × g, 4 DEG C of centrifugation 20min, remove supernatant;Add 0.5mL SM (1L:NaCl 5.8g, MgSO4.7H2O 2.0g, 1M Tris-HCl (pH7.4) 50mL) solution, room temperature effect 1h;By the way that isometric chloroform 30s is added;4 DEG C of 3000 × g from Heart 15min recycles the aqueous favoring containing phage particle.By the SppYZU01 phage particle of the purifying of acquisition and SM buffer Bacteriophage bacteriostatic agent mother liquor is mixed to form in 1:10 ratio.
The present invention using bacteriophage SppYZU01 can Specific lytic Baltic Sea Shewanella, under refrigerated conditions can be with Effectively inhibit the metabolism of Baltic Sea Shewanella and breeding;Since bacteriophage SppYZU01 of the present invention can inhibit mycoderm It is formed, is easy to be configured to flushing liquor or leacheate by traditional method,.
Detailed description of the invention
Fig. 1 is that the bacteriostasis of different bacteriophages separation strains compares.
The antibacterial result of Fig. 2 bacteriophage SppYZU01 single layer plate.
Fig. 3 bacteriophage SppYZU01 electromicroscopic photograph.
Fig. 4 bacteriophage SppYZU01 full-length genome map.
The inhibitory effect that Fig. 5 bacteriophage SppYZU01 forms mycoderm, wherein Control indicates pair for not adding bacteriophage According to group;Blank indicates pure culture base blank control group;A, B, C, D, E group indicate to add 104PFU/mL、105PFU/mL、106PFU/ mL、107PFU/mL、108The SppYZU01 processing group of PFU/mL concentration, every group 5 parallel, and asterisk indicates and control group difference pole Significantly (p < 0.001).
Bacteriostasis of Fig. 6 bacteriophage SppYZU01 in anchovy sauce preserving process, wherein solid data points are indicated not plus bitten The control group of thallus;Hollow data points are to add the experimental group of bacteriophage;Circular data point is 25 DEG C of storage measurement results;It is rectangular Data are the result of 4 DEG C of storage measurements.
Bacteriostasis of Fig. 7 bacteriophage SppYZU01 in fillet preserving process, wherein solid data points are indicated without biting The fillet (control group) of thallus processing;Hollow data points are the fillet (experimental group) of bacteriophage combined treatment;Circular data point is 25 DEG C of storage measurement results;Square data points are the result of 4 DEG C of storage measurements.
Fresh-keeping effect of Fig. 8 bacteriophage SppYZU01 in fillet preserving process, wherein black histogram is indicated without biting The fillet (control group) of thallus processing;White histogram is the fillet (experimental group) of bacteriophage combined treatment;Scheming A is 25 DEG C of storages Fillet measurement result;Scheme the result that B is 4 DEG C of storage measurements.
Specific embodiment
The present invention is further illustrated below in conjunction with Figure of description and specific embodiment, but embodiment is not to the present invention It limits in any form.
Present invention test bacteriophage host strain Baltic Sea Shewanella (Shewanella baltica) SYZU01, by Yangzhou University's food microorganisms laboratory is isolated from fresh-water fishes corrupt in cryopreservation, and bacterial strain is preserved in Chinese Typical Representative culture Collection (abbreviation CCTCC), preservation address: Wuhan Wuhan University;Deposit number: CCTCC NO:M 2016794;Preservation day Phase: on December 2nd, 2016;Classification naming are as follows: Baltic Sea Shewanella SYZU01, Shewanella baltica SYZU01
The present invention tests Baltic Sea Shewanella bacteriophage SppYZU01 (the Shewanella baltica used Phage SppYZU01), be preserved in China typical culture collection center (abbreviation CCTCC), preservation address: Wuhan Wuhan is big It learns;Deposit number: CCTCC NO:M 2016715;Preservation date: on December 2nd, 2016;Classification naming are as follows: Baltic Sea Shiva Salmonella bacteriophage SppYZU01 (Shewanella baltica phage SppYZU01).
Unless stated otherwise, the present invention uses reagent, method and apparatus for the art conventional reagent, method and are set It is standby.
Unless stated otherwise, used medium of the embodiment of the present invention and experimental condition are this field conventional medium and examination It tests.Unless stated otherwise, agents useful for same of the embodiment of the present invention is commercially available.
Embodiment 1, bacteriophage separation and purifying preparation
Bacteriophage separation
Sample of the present invention picks up from Jiangsu Yangzhou market of farm produce sewage, and 30mL sewage sample is taken to be put into 50mL centrifuge tube, 5000 × g is centrifuged 10min, and 5mL supernatant is taken to be added in 5mL LB liquid medium, while 100 μ L logarithmic growth phases are added Baltic Sea Shewanella SYZU01, place 25 DEG C of shaking tables and be incubated overnight, next day, by the culture in test tube go to it is sterile from In heart pipe, 4 DEG C, 5000 × g is centrifuged 10min, takes supernatant to cross 0.22 μm of filter membrane, obtains bacteriophage stoste, places 4 DEG C of refrigerators and protects It deposits.
Doubling dilution is carried out to bacteriophage stoste with sterile SM buffer, takes the 100 μ L of phagocytosis body fluid of appropriate dilution 10min is mixed at room temperature with the Baltic Sea Shewanella SYZU01 of 100 μ L logarithmic growth phases, adds 5mL LB semisolid Culture medium mixes, and double-layer plate is made on the LB solid medium made in advance in rapid dumps, is inverted after solidification and is placed on 25 It is cultivated in DEG C constant incubator.
The transparent single plaque of picking mixes, 4 DEG C into 1mL SM buffer on the above-mentioned double-layer plate for plaque occur It places for 24 hours;Secondary daily sterile SM buffer carries out doubling dilution to phagocytosis body fluid, takes the bacteriophage liquid of appropriate dilution 100 μ L mix 10min with the Baltic Sea Shewanella of 100 μ L logarithmic growth phases at room temperature, add 5mL LB semisolid Culture medium mixes, and double-layer plate is made on the LB solid medium made in advance in rapid dumps, is inverted after solidification and is placed on 25 It is cultivated in DEG C constant incubator.Operation 3 times of double-layer agar technique are repeated, after obtained plaque is in the same size, that is, think to separate To be pure bacteriophage.Separate obtain bacteriophage, obtain separation strains SppYZU01, SppYZU01-1, SppYZU01-2, SppYZU01-3、SppYZU01-4。
Take respectively 10 Baltic Sea μ L Shewanella bacteriophage separation strains SppYZU01, SppYZU01-1, SppYZU01-2, The suspension of SppYZU01-3, SppYZU01-4 are mixed with the Baltic Sea Shewanella SYZU01 in 100 μ L logarithmic phase growth periods, with The SM buffer of same volume is control (Blank), is placed at room temperature for 10min, is then added in 20mL LB liquid medium, is inoculated with Object is placed on constant temperature incubation in 25 DEG C of incubators, in 0h, for 24 hours, 48h sample 1mL, with spectrophotometer measurement wavelength in 600nm The light absorption value at place, every group setting 3 parallel, is averaged the bacteriostasis for comparing different bacteriophages separation strains.As a result such as Shown in Fig. 1, SppYZU01 shows for 24 hours with the OD 600nm of 48h significantly less than other bacteriophage separation strains (P < 0.01) With strongest rejection ability.
The purifying of bacteriophage
The Baltic Sea Shewanella bacteriophage (SppYZU01) liquid for taking 100 μ L isolated respectively is raw with logarithmic phase respectively Long-term 100 μ L of Baltic Sea Shewanella liquid mixing, is placed at room temperature for 10min, is then added in 10mL LB liquid medium, 25 DEG C, 150rpm constant temperature oscillation is incubated overnight;Culture in test tube is gone in sterile centrifugation tube, through 5000 × g, 10min Supernatant is collected after centrifugation, by 0.22 μm of filtering with microporous membrane degerming, obtains bacteriophage multiplication liquid.Add 0.93g PEG 8000,0.58g NaCl shake up to dissolution, and 4 DEG C overnight;10000 × g, 4 DEG C of centrifugation 20min, remove supernatant;Add 0.5mL SM (1L:NaCl 5.8g, MgSO4.7H2O 2.0g, 1M Tris-HCl (pH7.4) 50mL) solution, room temperature effect 1h;Pass through addition Isometric chloroform 30s;4 DEG C of 3000 × g centrifugation 15min recycle the aqueous favoring containing phage particle.Obtain purifying Bacteriophage detects purified phage lytic effect with double-layer plate.SppYZU01 produces Baltic Sea Shewanella as the result is shown Raw strong cracking effect (as shown in Figure 2).
Morphology of phages feature
With transmission electron microscope observing morphology of phages feature.Using phosphotungstic acid background stain, copper mesh there is into the one side of film upward, It takes 10 μ L high-titer phage stocks drop to use blotting paper suck dry moisture after on copper mesh, adsorbing 15min, takes out copper mesh, in air Spontaneously dry 2-3min.Then phosphotungstic acid (PTA) aqueous solution that 2% is dripped on copper mesh is dyed, and is removed after 2min, is used Blotting paper suck dry moisture dries 5min in air, with transmission electron microscope observing, chooses clearly bacteriophage image and take pictures point Analysis.
As a result as shown in figure 3, the head bacteriophage SppYZU01 is symmetrical, diameter is about 55nm, and tail length is about 160nm, is had Retractility caudal sheath, morphological feature are attributed to Myoviridae.
Phage genome feature
The bacteriophage SppYZU01 suspension of purifying is added into DNase I to 5 μ g/mL, RNase A of final concentration to 1 μ g/mL, 37 DEG C incubate 1h;EDTA (pH 8.0) is added to final concentration 20mmol/L;Add Proteinase K to 50 μ g/mL of final concentration, adds SDS to end Concentration 0.5% mixes, 56 DEG C × 1h;Isometric balance phenol (pH 8.0) oscillation extracting is added, 5000 × g is centrifuged 10min, receives Collect upper strata aqueous phase;It is extracted again once with isometric chloroform, 5000 × g, is centrifuged 10min, collect upper strata aqueous phase;1/10 volume is added 3mol/L NaAc (pH 5.2), adds the dehydrated alcohol precipitate nucleic acids of two volumes, and -20 DEG C are overnight, 4 DEG C, 12000 × g from Heart 10min;Precipitating respectively washed once with 70% ethyl alcohol and dehydrated alcohol, go ethyl alcohol, air drying precipitating;With appropriate TE (pH 8.0) be suspended precipitating, quantitative roughly on GeneQuant nucleic acid quantification instrument, and parameter, -20 DEG C of preservations temporarily are arranged by ds DNA;It mentions The phage DNA taken send to Shenzhen Heng Chuan gene biological Co., Ltd and is carried out entirely by Illumina Hiseq 2500PE150 platform Gene order-checking and analysis.
As a result as shown in figure 4, SppYZU01 full-length genome is 43567bp, wherein encoding gene total length is respectively 40884bp, average length 834bp account for the 93.84% of overall length, and G/C content is respectively 55.72%, there is 49 open reading frame (ORFs).There are 12 ORFs not find homologous genes in the database in 49 ORFs coding albumen of SppYZU01,37 The albumen of ORFs coding finds homology sequence, including 25 hypothesis albumen (hypothetical protein) and 12 The sequence of a known protein function.There is no the full-length genomes of Baltic Sea Shewanella bacteriophage in Genbank database Sequence and related gene, data show that SppYZU01 is one plant of new bacteriophage.Without containing known in SppYZU01 genome Virulence associated gene.
Embodiment 2, bacteriophage SppYZU01 are to the inhibiting effect of Baltic Sea Shewanella biofilm
The Baltic Sea Shewanella SYZU01 of logarithmic growth phase is diluted with nutrient broth medium, ultimate density It is 1 × 107CFU/mL, experimental group: every hole is separately added into dilution bacterium solution (10 in sterile 96 orifice plate7) and bacteriophage CFU/mL SppYZU01 suspension (104PFU/mL、105PFU/mL、106PFU/mL、107PFU/mL、108PFU/mL) each 150 μ L;Control group: Dilution bacterium solution (10 is added in every hole in sterile 96 orifice plate7) and each 150 μ L of nutrient broth medium CFU/mL;Blank group: every hole Add 300 μ L nutrient broth mediums;37 DEG C of cultures are for 24 hours;96 orifice plates are taken out, suspension bacteria liquid is sucked out, cleans 96 orifice plates with sterile PBS 3 times, drying sufficiently removes the thallus that swims;The violet staining liquid that 200 μ L concentration are 0.2% is added in every hole, dyes 30min;It inhales Dyeing liquor out thoroughly cleans 96 orifice plates to eluate in colourless, drying with sterile PBS;33% acetic acid that 200 μ L are added in every hole is de- Toner vibrates sufficiently dissolution, the OD value at microplate reader measurement 600nm.Every group parallel determination 5 times.
As a result as shown in figure 5, being added 105PFU/mL、106PFU/mL、107PFU/mL、108PFU/mL SppYZU01 suspension Test group (B, C, D, E group) survey OD600nmSubstantially less than control group (p < 0.001) shows to be higher than 105PFU/mL concentration SppYZU05 can significantly inhibit the formation of Baltic Sea Shewanella biomembrane.
The bacteriostasis of embodiment 3, bacteriophage SppYZU01 in anchovy sauce storage
After fresh grass carp slaughter, fish ridge two sides meat is taken, removes the peel, is cut into slice, is weighed, by the volume and meat quality of fish of water Amount ratio is 2:1, after adding boiling to boil 5min, with filtered through gauze, adds water again, restores to first time additive amount, continue to boil 5min is filtered with filter paper, and filtrate pH is adjusted to 7 with NaOH, 40mg L-cysteine and 40mg L- is added in every liter of anchovy sauce Methionine dispenses 121 DEG C of sterilizing 15min into conical flask.Baltic Sea Shewanella SYZU01 is pressed 106CFU/mL is dense Degree is inoculated into 30mL anchovy sauce, and 30 μ L bacteriophage SppYZU01 suspensions (10 are added in experimental group8PFU/mL), it is added in control group 30 μ L SM buffers, inoculum are individually positioned in constant-temperature preserving in 25 DEG C of incubators and 4 DEG C of refrigerators, the culture of 25 DEG C of cultures Object samples 1mL every 12h, and the culture of 4 DEG C of cultures was every 1 day sampling 1mL, with spectrophotometer measurement wavelength at 600nm Light absorption value, every group of setting 3 are parallel, are averaged for analyzing.
As a result as shown in fig. 6, as storage time extends, control group OD600nmRapid growth, respectively on day 2 (25 DEG C) Reach 1.12 and 0.98 when with 7d (4 DEG C), and adds the experimental group OD of SppYZU01 suspension600nmRemain at lower water Flat (OD600< 0.2), show that the SppYZU01 bacteriophage in the present invention can be to the Baltic Sea Shiva under the conditions of 25 DEG C and 4 DEG C Salmonella plays the role of significantly inhibiting (P < 0.01).
The bacteriostasis of embodiment 4, bacteriophage SppYZU01 in fillet storage
It acquires fresh grass carp muscle of back and is divided into 60 parts, average every part of 10g.15min, sterile water are impregnated with sodium hypochlorite Rinsing 5 times, pulls out and drains;10min is impregnated with Baltic Sea Shewanella suspension, pulls out and drains;Control group is soaked with SM buffer 10min is steeped, experimental group impregnates 10min with bacteriophage SppYZU01 suspension, pulls out and drain, be fitted into polythene film bag, be placed in 4 DEG C and 25 DEG C at constant temperature store.4 DEG C of preservations 0d, 2d, 4d, 6d, 8d, 10d, 12d and 25 DEG C of preservation 0h, 12h, for 24 hours, 36h, Bacterium colony total number of bacteria (TAC) is measured by sampling in 48h, investigates bacteriostasis.
Total number of bacteria (TAC) measurement result such as Fig. 7 under 25 DEG C and 4 DEG C of holding conditions.Under two kinds of reserve temperatures, storage is just Phase control group and experimental group total number of bacteria are respectively as follows: 3.21log CFU/g and 3.17log CFU/g, with the increasing of storage time Add, the fillet total number of bacteria of bacteriophage immersion treatment is consistently lower than control group in entire storage period, reduces respectively than control group 4.1logCFU/g and 3.96log CFU/g shows the bacteriophage SppYZU01 suspension in the present invention in two kinds of reserve temperatures to fish Baltic Sea Shewanella in piece plays significant bacteriostasis.
The fresh-keeping effect of embodiment 5, bacteriophage SppYZU01 in fillet cold storage procedure
It acquires fresh grass carp muscle of back and is divided into 60 parts, average every part of 10g.15min, sterile water are impregnated with sodium hypochlorite Rinsing 5 times, pulls out and drains;10min is impregnated with Baltic Sea Shewanella strain suspension, pulls out and drains;Control group SM buffer 10min is impregnated, experimental group impregnates 10min with bacteriophage SppYZU01 suspension, pulls out and drain, be fitted into polythene film bag, set Constant temperature is stored at 4 DEG C and 25 DEG C.4 DEG C of preservations 0d, 4d, 8d, 12d and 25 DEG C of preservation 0h, for 24 hours, 48h is measured by sampling measurement and waves Hair property alkali nitrogen (TVB-N) value, investigates fresh target change.The measurement of TVB-N value is referring to GB/T 5009.44-2003, using semimicro Nitriding is measured.
Measurement result such as Fig. 8.According to existing result of study, fish product TVB-N value is that freshness is whole in 20mg N/100g Point, and be then complete corruption in 35mg N/100g.Under room temperature (25 DEG C) and low temperature (4 DEG C) holding conditions, control group exists respectively When 2d and 8d, TVB-N value is more than 35mg N/100g, reaches complete corruption.And experimental group (bacteriophage SppYZU01 immersion treatment Fillet) be maintained at 22.5 and 17.6mg N/100g in 2d and 8d TVB-N value respectively, store terminals in two kinds of temperature, TVB-N value is less than 35mg N/100g.The result shows that the bacteriophage SppYZU01 in the present invention is equal under two kinds of reserve temperatures The rising of TVB-N value caused by the Shewanella of the Baltic Sea is significantly suppressed, maintenance freshness is played the role of, extends preservation term.

Claims (3)

1. a kind of Baltic Sea Shewanella bacteriophage (Shewanella baltica phage) SppYZU01, deposit number For CCTCC NO:M 2016715.
2. Baltic Sea Shewanella bacteriophage (Shewanella baltica phage) SppYZU01 described in claim 1 Preparing the application in bacteriostatic agent.
3. a kind of Baltic Sea Shewanella bacteriostatic agent, it is characterised in that: be with bacteriophage SppYZU01 described in claim 1 For main component.
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