CN107447032A - A kind of probe, primer and kit for detecting inborn gene - Google Patents

A kind of probe, primer and kit for detecting inborn gene Download PDF

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CN107447032A
CN107447032A CN201710839183.XA CN201710839183A CN107447032A CN 107447032 A CN107447032 A CN 107447032A CN 201710839183 A CN201710839183 A CN 201710839183A CN 107447032 A CN107447032 A CN 107447032A
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genes
probe
primer
foxp2
detecting
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罗益华
吴丽萍
陈世杰
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Shanghai Fleck Molecular Biology Technology Co Ltd
Shanghai Flash Biotechnology Co Ltd
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Shanghai Fleck Molecular Biology Technology Co Ltd
Shanghai Flash Biotechnology Co Ltd
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Abstract

A kind of probe, primer and kit for detecting inborn gene.It is used to detect the probe of logic and intelligent gene and language intelligence gene in inborn gene, primer and kit the invention discloses a kind of.The present invention designs probe and primer for the rs1456031 sites of FOXP2 genes, establishes real-time fluorescence PCR system, can detect rs4680, rs1456031 mutant form for the rs4680 sites design probe and primer of COMT genes;Detection sensitivity of the present invention is high, and the mutation of 100 500 copies can detect;The present invention can directly use the human gene group DNA from the source such as swab, fresh and freezing whole blood, blood plasma and body fluid, and simple to operate, detection is cheap, and clinical application range is wide;Present invention detection high specificity, detection speed is fast, and detection process only needs to complete for 80 minutes.

Description

A kind of probe, primer and kit for detecting inborn gene
Technical field
The present invention relates to technical field of molecular biology, and in particular to for detect in inborn gene logic and intelligent gene and Probe, primer and the kit of language intelligence gene.
Background technology
Talent is exactly natural gift, is the growth characteristic just being had been provided with before growth.Possesses day in some things or field The raw ability being good at innately holds thought(Great enthusiasm), it is also possible to have, and allow its same experience even without Grown up in the case of experience with the speed higher than other people, and have its singularity, particularity.If this people has Growing potential and possibility in his performance in life, then he just possesses the inborn device of this aspect Amount.
Each child is a cherub, and just wing is concealed when descending to the mortal world, has been melted into their talent, institute It is special with each child, all capable wait is exploited, but parents can not all be the Bole with insight, often The talent of child is can't see, various trainings have to be reported in the case where child's schoolwork burden is very heavy, and to child in being entangled with Class is instructed, to score a lucky hit, child's potential is excited, does not know that things turn out contrary to one's wishes but, even more aggravated the burden of child.
The child of oneself is adapted to what is learned, and which field can violate difficulty to this many parent with emphasis culture in:If " There is any method to detect all right.”
Biological educational circles finds several genes for being related to IQ formation at present.Wherein important has COMT genes and foxp2 genes. The PROTEIN C OMT of COMT gene codes be primarily present with brain, it can interference body solve problem center -- most prefrontal cortex Activity.COMT is the main metabolic enzyme of degraded catecholamine, and internal catechol can be made to lose bioactivity or toxicity.If production Raw gene mutation, then it can reduce thinking elasticity.And Foxp2 genes(Forkhead box p2)That is jaw frame P2 genes, it is control The gene of language ability development.In the mankind, FOXP2 genes are on the 7th pair of chromosome.It is that have complicated hair many other The animal of sound and song learning ability, such as in song bird, be also found.Therefore the gene, which is undergone mutation, can influence language ability, It is also an autism susceptibility gene simultaneously.So that the abnormal of it causes specific congenital disfluency in the mankind.
The change of these genes will seriously affect the IQ potentiality of a people.For a children, if parent is not because Know existing genetic defect, the IQ culture without paying special attention to child, miss the optimal time for improving IQ, will Irretrievable loss can be caused throughout one's life to child.
IQ test at present is typically tested using psychology scaling method questionnaire.Such IQ is tested easily by mood, body The influence of body quality, repeatability is low, with a low credibility, contingency is big.The accuracy tested is affected by the external environment larger.Due to Requirement to measured's degree of cooperation, typically all it is unsuitable for testing child before young children, especially 5 years old.But due to People's IQ in children sharply increases, and early education is all most important to all one's life of individual.If the people biology related to IQ It is defective to learn hereditary capacity, early detection and takes measures more play significant role in time.
Detect method or DNA direct sequencings, chip method or dye method of inborn gene etc. at present, but direct sequencing, Chip method, dye method sensitivity are low, and poor specificity, only 20-30%, detecting step is cumbersome, and efficiency is low, at least needs 2-3 days Time can just go out result;And if during sample genomic dna content rareness, direct sequencing can cause substantial amounts of missing inspection and vacation Feminine gender, so being important to the detection method of high sensitivity and high specific a kind of to realize the detection of gene mutation.The present invention carries For a kind of easy, objectively method carries out the test of children intelligence biological heredity characteristic, there is provided weight during to rearing style child The reference information wanted, there is very positive meaning to follow-on culture.
The content of the invention
The RS4680 that one of the technical problem to be solved in the present invention is to provide for detecting COMT genes is mutated and FOXP2 bases The probe of the rs1456031 mutation of cause.
The RS4680 that the second technical problem to be solved by the present invention is to provide for detecting COMT genes is mutated and FOXP2 bases The primer of the rs1456031 mutation of cause.
The RS4680 that the third technical problem to be solved by the present invention is to provide for detecting COMT genes is mutated and FOXP2 bases The kit of the rs1456031 mutation of cause.
In order to solve the above technical problems, the present invention adopts the following technical scheme that:
In one aspect of the invention, there is provided a kind of probe for the RS4680 mutation for being used to detect COMT genes, the probe is to be directed to The RS4680 sites design of COMT genes is detected, its sequence is:
COMTwp:Fam+CGCTGGCATGAAGGAC+MGB, as shown in SEQIDNo.3 or its complementary strand;And COMTmp: VIC+ CGCTGGCgTGAAGGAC+MGB, as shown in SEQIDNo.4 or its complementary strand;
In another aspect of this invention, there is provided a kind of primer for the RS4680 mutation for being used to detect COMT genes, the primer is pin The RS4680 sites of COMT genes are designed, its sequence is:
COMTF:ACCCAGCGGATGGTGGAT, as shown in SEQIDNo.1;
COMTR:ACAACGGGTCAGGCATGC, as shown in SEQIDNo.2;
In another aspect of this invention, there is provided a kind of probe for being used to detect the rs1456031 sites of FOXP2 genes, its feature It is, the probe is that the rs1456031 sites for being directed to FOXP2 genes are designed, and its sequence is:
FOXP2wp:Fam+TTGTGATTGTACGCCTACAAA+MGB, as shown in SEQIDNo.7 or its complementary strand;With FOXP2mp:VIC+TTGTGATTGCACGCCTACAAA+MGB, as shown in SEQIDNo.8 or its complementary strand;
In another aspect of this invention, there is provided a kind of primer for being used to detect the rs1456031 site mutations of FOXP2 genes, its It is characterised by, the primer is that the rs1456031 sites for being directed to FOXP2 genes are designed, and its sequence is:
FOXP2F:TTACATGCTTCCCTTTAGTTAATAAT, as shown in SEQIDNo.5;
FOXP2R:TCTGCTATCCTGTAATAATAAGCATAC, as shown in SEQIDNo.6;
The present invention is used for PCR primer and the spy that the rs1456031 for the RS4680 mutation and FOXP2 genes for detecting COMT genes is mutated Pin design method, it is specially:Forward and reverse PCR universal primers are designed in gene very high homology and conservative region, in mutated site Design corresponding fluorescence probe.
In another aspect of this invention, there is provided a kind of RS4680 mutation for being used to detect COMT genes and FOXP2 genes The PCR amplification kits of rs1456031 mutation, it includes dNTP, Mg2+, Taq DNA polymerase, Tris-HCl systems, specificity Primer, wild-type probe, saltant type probe, the specific primer be COMTF, COMTR as described above, FOXP2F, FOXP2R primer pairs, the wild-type probe, saltant type probe be COMTwp, COMTmp as described above, FOXP2wp, FOXP2mp probes.
The present invention is using the principle of TaqMan-MGB detections, and in gene very high homology and the forward and reverse PCR of conserved regions design is general draws Thing, corresponding probe is designed in mutated site, wild-type probe can hybridize completely in wild-type template(That is the left side in Fig. 1 The amplification on side), fluorescence signal can be detected, and in saltant type template, it can not hybridize fully, can't detect fluorescence signal.
In another aspect of this invention, there is provided application of the above-mentioned probe in inborn gene detecting kit.
In another aspect of this invention, there is provided application of the above-mentioned primer in inborn gene detecting kit.
The present invention can be used for scientific research, other technical tie-ups of clinical detection use with existing, and these technologies include:The first generation Sequencing, second generation sequencing, third generation sequencing, genetic chip, the reverse molecule hybridization of PCR-ELISA, PCR-, PCR- genetic chips point Analysis;The present invention be applied to mankind's talent gene detection, including but not limited to the RS4680 codon mutations of COMT genes and The rs1456031 mutation of FOXP2 genes.
Compared with prior art, the beneficial effects of the present invention are:
(1)The present invention establishes real-time fluorescence PCR system, can detect RS4680 mutation and the FOXP2 genes of COMT genes Rs1456031 mutant forms;
(2)Detection sensitivity is high, and the mutation of 100-500 copies can detect;
(3)The human gene group DNA from the source such as swab, fresh and freezing whole blood, blood plasma and body fluid, operation letter can directly be used Single, detection is cheap, and clinical application range is wide;
(4)Detection speed is fast, and detection process only needs to complete for 80 minutes, and compared with direct sequencing, the present invention can be Detection, experimental result concordance rate 100% are completed in 80 minutes, but experimental period at least saves 2-3 days;
(5)High specificity is detected, experiments verify that, with the COMT mutational sites that the primer and probe of the present invention obtains with directly surveying The mutational site that sequence method obtains is consistent, detects high specificity.Have in the screening of antineoplastic target medicine from now on is anti-extensive Application prospect.
Embodiment
With embodiment, the present invention is further detailed explanation below.It should be understood that these embodiments are merely to illustrate the present invention Rather than limitation the scope of the present invention.
Embodiment 1
1st, the present invention is detected with genetic engineering recombinant plasmid, using rs4680 saltant types as detection object.Through genetic engineering structure For plasmid with rs4680 mutators as detection object, plasmid pCOMTM is the plasmid with rs4680 mutation;Plasmid PCOMTW is the plasmid with wild type rs4680 genes.These plasmids are dissolved in TE buffer solutions(10mMTris-HCl, 1mMEDTA, PH=8.0)In, through ultraviolet specrophotometer quality measurement and concentration, plasmid copy number is calculated, with TE buffer solutions ladder Degree dilution acquisition 10000,1000,100,10 copies/ul pCOMTM and pCOMTW plasmid solutions, then react mould as PCR Plate.
2nd, the synthesis of COMT specific primers and probe:According to people COMT gene mutation sites (rs4680), 2 are designed Probe, 5 ' end flag F AM (green fluorescence) or VIC (yellow fluorescence), 3 ' end mark MGB quenching groups, brilliant molecule is dodged by Shanghai Bio tech ltd synthesizes and mark.Probe sequence and mark are as follows:
COMTwp:Fam+CGCTGGCATGAAGGAC+MGB, as shown in SEQIDNo.3 or its complementary strand;And COMTmp: VIC+ CGCTGGCgTGAAGGAC+MGB, as shown in SEQIDNo.4 or its complementary strand;
PCR primer PRIMER5 programmings, rs4680 site sequence primers are as follows:
COMTF:ACCCAGCGGATGGTGGAT, as shown in SEQIDNo.1;
COMTR:ACAACGGGTCAGGCATGC, as shown in SEQIDNo.2;
Above-mentioned primer is synthesized by Shanghai Shan Jing molecular biosciences Science and Technology Ltd..
3rd, Fluorescence PCR:The present invention is detected with genetic engineering recombinant plasmid, using rs4680 saltant types as detection object. For the plasmid with rs4680 mutators through genetic engineering structure as detection object, plasmid pCOMTM is to be dashed forward with rs4680 The plasmid of change;Plasmid pCOMTW is the plasmid with wild type rs4680.These plasmids are dissolved in TE buffer solutions(10mMTris- HCl, 1mMEDTA, PH=8.0)In, through ultraviolet specrophotometer quality measurement and concentration, plasmid copy number is calculated, is buffered with TE Liquid gradient dilution acquisition 10000,1000,100,10 copies/ul pCOMTM and pCOMTW plasmid solutions, then as PCR moulds Plate carries out amplified reaction, using 2 × GoldernStarTaqMasterMix (be century purchased from health, the lTaq of μ containing 0.05U/ enzymes, 0.5mMdNTP, PCR buffer solution(Containing Mg2+And 10% glycerine) and above-mentioned primer, probe prepare 20 μ lPCR reaction systems, Mei Gemo Plate amounts to 2 reactions, notices that each reaction takes DNA profiling amount the same, reaction system is specific as follows:
The reaction system of first reaction of pCOMTM templates:
Component Volume (ul) Ultimate density
2×GoldernStarTaqMasterMix 25 1 X
COMTF (25pmol/ul) 1 0.5uM
COMTR (25pmol/ul) 1 0.5uM
COMTW (25pmol/ul) 0.5 0.25uM
pCOMTM (100copies/ul) 2 4copies/ul
ddH2O (ul) 20.5 -
Total Volume(ul) 50 -
The reaction system of second reaction of pCOMTM templates:
Component Volume (ul) Ultimate density
2×GoldernStarTaqMasterMix 25 1 X
COMTF (25pmol/ul) 1 0.5uM
COMTR (25pmol/ul) 1 0.5uM
COMTM (25pmol/ul) 0.5 0.25uM
pCOMTM (100copies/ul) 2 4copies/ul
ddH2O (ul) 20.5 -
Total Volume(ul) 50 -
The reaction system of first reaction of pCOMTW templates:
Component Volume (ul) Ultimate density
2×GoldernStarTaqMasterMix 25 1 X
COMTF (25pmol/ul) 1 0.5uM
COMTR (25pmol/ul) 1 0.5uM
COMTW (25pmol/ul) 0.5 0.25uM
pCOMTW (100copies/ul) 2 4copies/ul
ddH2O (ul) 20.5 -
Total Volume(ul) 50 -
The reaction system of second reaction of pCOMTW templates:
Component Volume (ul) Ultimate density
2×GoldernStarTaqMasterMix 25 1 X
COMTF (25pmol/ul) 1 0.5uM
COMTR (25pmol/ul) 1 0.5uM
COMTM (25pmol/ul) 0.5 0.25uM
pCOMTW (100copies/ul) 2 4copies/ul
ddH2O (ul) 20.5 -
Total Volume(ul) 50 -
Reacted using ABI7500 line fluorescent quantitative PCR apparatus, specific response procedures set as follows:
94℃,5min; (94℃,20s;60℃,30s) x40;The detection of Fam/VIC fluorescence signals is set at 72 degree.
Analysis of test results:
Confirm non-selected correction fluorescence reference, amplification curve is analyzed.According to image adjustment Baseline after analysis Start values, End values(User can voluntarily adjust according to actual conditions, and Start values can may be provided in 5 in 3~15, End values~ 20), Threshold values(Rn)Select at the flex point for amplification curve rise(Have just enter into increased logarithmic phase), click on Analyze Analyzed, then to the Ct values each reacted are recorded under Plate windows, result judgement is carried out according to criterion.Each mould Plate has 2 reactions, that is, has 2 Ct values, Ct values<35 for the positive, 35<Ct<40 be critical value(Gray area), no Ct values for the moon Property.If Ct values fall in gray area, it is necessary to the experiment that tries again again, to reaffirm.In this experiment, pCOMTM templates the One reaction, during with COMTW probes, Ct=0;When COMTM probes are used in second reaction of pCOMTM templates, Ct=32, detection knot Fruit illustrates that this template is positive for COMT saltant types, and this is consistent with our actual template pCOMTM templates;PCOMTW templates One reaction, during with COMTW probes, Ct=32.2;When COMTM probes are used in second reaction of pCOMTW templates, Ct=0, detection As a result it is COMT wild-type positives to illustrate this template, and this is consistent with our actual template pCOMTW templates;
Experimental result is as follows:
During with pCOMTM templates:
  Ct values
COMTW 0
COMTM 32
During with pCOMTW templates:
  Ct values
COMTW 32.2
COMTM 0
Embodiment 2
1st, the present invention is detected with genetic engineering recombinant plasmid, using rs1456031 saltant types as detection object.Built through genetic engineering The plasmid with rs1456031 mutators as detection object, plasmid pFOXP2M is the matter with rs1456031 mutation Grain;Plasmid pFOXP2W is the plasmid with wild type rs1456031 genes.These plasmids are dissolved in TE buffer solutions (10mMTris-HCl, 1mMEDTA, PH=8.0)In, through ultraviolet specrophotometer quality measurement and concentration, calculate plasmid copy Number, obtain 10000 with the dilution of TE buffer gradients, 1000,100,10 copies/ul pFOXP2M and pFOXP2W plasmid solutions, Then PCR reaction templates are used as.
2nd, the synthesis of FOXP2 specific primers and probe:According to people FOXP2 gene mutation sites (rs1456031), if 2 probes are counted, 5 ' end flag F AM (green fluorescence) or VIC (yellow fluorescence), 3 ' end mark MGB quenching groups, are dodged by Shanghai brilliant Molecular biosciences Science and Technology Ltd. synthesizes and mark.Probe sequence and mark are as follows:
FOXP2wp:Fam+TTGTGATTGTACGCCTACAAA+MGB, as shown in SEQIDNo.7 or its complementary strand;With FOXP2mp:VIC+TTGTGATTGCACGCCTACAAA+MGB, as shown in SEQIDNo.8 or its complementary strand;
PCR primer PRIMER5 programmings, rs1456031 site sequence primers are as follows:
FOXP2F:TTACATGCTTCCCTTTAGTTAATAAT, as shown in SEQIDNo.5;
FOXP2R:TCTGCTATCCTGTAATAATAAGCATAC, as shown in SEQIDNo.6;
Above-mentioned primer is synthesized by Shanghai Shan Jing molecular biosciences Science and Technology Ltd..
3rd, Fluorescence PCR:The present invention is detected with genetic engineering recombinant plasmid, using rs1456031 saltant types as detection pair As.The plasmid with rs1456031 mutators through genetic engineering structure as detection object, plasmid pFOXP2M for The plasmid of rs1456031 mutation;Plasmid pFOXP2W is the plasmid with wild type rs1456031.These plasmids are dissolved in TE and delayed Fliud flushing(10mMTris-HCl, 1mMEDTA, PH=8.0)In, through ultraviolet specrophotometer quality measurement and concentration, calculate plasmid and copy Shellfish number, obtain 10000 with the dilution of TE buffer gradients, 1000,100,10 copies/ul pFOXP2M and pFOXP2W plasmids it is molten Liquid, amplified reaction then is carried out as pcr template, (is century purchased from health, contains using 2 × GoldernStarTaqMasterMix 0.05U/ μ lTaq enzymes, 0.5mMdNTP, PCR buffer solution(Containing Mg2+And 10% glycerine) and above-mentioned primer, that probe prepares 20 μ lPCR is anti- System is answered, each template amounts to 2 reactions, notices that each reaction takes DNA profiling amount the same, reaction system is specifically such as Under:
The reaction system of first reaction of pFOXP2M templates:
Component Volume (ul) Ultimate density
2×GoldernStarTaqMasterMix 25 1 X
FOXP2F (25pmol/ul) 1 0.5uM
FOXP2R (25pmol/ul) 1 0.5uM
FOXP2W (25pmol/ul) 0.5 0.25uM
pFOXP2M (100copies/ul) 2 4copies/ul
ddH2O (ul) 20.5 -
Total Volume(ul) 50 -
The reaction system of second reaction of pFOXP2M templates:
Component Volume (ul) Ultimate density
2×GoldernStarTaqMasterMix 25 1 X
FOXP2F (25pmol/ul) 1 0.5uM
FOXP2R (25pmol/ul) 1 0.5uM
FOXP2M (25pmol/ul) 0.5 0.25uM
pFOXP2M (100copies/ul) 2 4copies/ul
ddH2O (ul) 20.5 -
Total Volume(ul) 50 -
The reaction system of first reaction of pFOXP2W templates:
Component Volume (ul) Ultimate density
2×GoldernStarTaqMasterMix 25 1 X
FOXP2F (25pmol/ul) 1 0.5uM
FOXP2R (25pmol/ul) 1 0.5uM
FOXP2W (25pmol/ul) 0.5 0.25uM
pFOXP2W (100copies/ul) 2 4copies/ul
ddH2O (ul) 20.5 -
Total Volume(ul) 50 -
The reaction system of second reaction of pFOXP2W templates:
Component Volume (ul) Ultimate density
2×GoldernStarTaqMasterMix 25 1 X
FOXP2F (25pmol/ul) 1 0.5uM
FOXP2R (25pmol/ul) 1 0.5uM
FOXP2M (25pmol/ul) 0.5 0.25uM
pFOXP2W (100copies/ul) 2 4copies/ul
ddH2O (ul) 20.5 -
Total Volume(ul) 50 -
Reacted using ABI7500 line fluorescent quantitative PCR apparatus, specific response procedures set as follows:
94℃,5min; (94℃,20s;60℃,30s) x40;The detection of Fam/VIC fluorescence signals is set at 72 degree.
Analysis of test results:
Confirm non-selected correction fluorescence reference, amplification curve is analyzed.According to image adjustment Baseline after analysis Start values, End values(User can voluntarily adjust according to actual conditions, and Start values can may be provided in 5 in 3~15, End values~ 20), Threshold values(Rn)Select at the flex point for amplification curve rise(Have just enter into increased logarithmic phase), click on Analyze Analyzed, then to the Ct values each reacted are recorded under Plate windows, result judgement is carried out according to criterion.Each mould Plate has 2 reactions, that is, has 2 Ct values, Ct values<35 for the positive, 35<Ct<40 be critical value(Gray area), no Ct values for the moon Property.If Ct values fall in gray area, it is necessary to the experiment that tries again again, to reaffirm.In this experiment, pFOXP2M templates First reaction, during with FOXP2W probes, Ct=0;When FOXP2M probes are used in second reaction of pFOXP2M templates, Ct=33, inspection Survey result and illustrate that this template is positive for FOXP2 saltant types, this is consistent with our actual template pFOXP2M templates;pFOXP2W The reaction of template first, during with FOXP2W probes, Ct=32.7;When FOXP2M probes are used in second reaction of pFOXP2W templates, Ct=0, testing result illustrate that this template is FOXP2 wild-type positives, and this is consistent with our actual template pFOXP2W templates;
Experimental result is as follows:
During with pFOXP2M templates:
  Ct values
FOXP2W 0
FOXP2M 33
During with pCOMTW templates:
  Ct values
FOXP2W 32.7
FOXP2M 0
Embodiment 3:
1st, the sensitivity of the present invention is detected with genetic engineering recombinant plasmid, through genetic engineering structure with COMT mutators For plasmid as detection object, plasmid pCOMTM is the plasmid with RS4680 mutation;Plasmid pCOMTW is with wild type COMT The plasmid of gene.These plasmids are dissolved in TE buffer solutions(10mMTris-HCl, 1mMEDTA, PH=8.0)In, through ultraviolet spectrometry light Degree meter quality measurement and concentration, calculates plasmid copy number, diluted with TE buffer solutions the pCOMTM that obtains 100 copies/ul and PCOMTW plasmid solutions, then as PCR reaction templates.
2nd, the synthesis of COMT specific primers and probe:According to people's COMT gene mutation sites, 2 probes, 5 ' end marks are designed FAM (green fluorescence) or VIC (yellow fluorescence), 3 ' end mark MGB quenching groups;The limited public affairs of brilliant molecular biosciences science and technology are dodged by Shanghai Department's synthesis and mark.Probe sequence and mark are the same as embodiment 1.
3rd, Fluorescence PCR:Using 100 good copies of above-mentioned dilution/ul pCOMTM and pCOMTW plasmids as template, respectively Take 0.5ul, 1ul, 2ul, 4ul to do to react, to detect the sensitivity of this kit.For example above-mentioned embodiment 1 of reaction system, simply add The template entered is different with ddH2O.
Reacted using ABI7500 line fluorescent quantitative PCR apparatus, specific response procedures set as follows:
94℃,5min; (94℃,20s;60℃,30s) x40;The detection of Fam/VIC fluorescence signals is set at 72 degree
Analysis of test results:
Confirm non-selected correction fluorescence reference, amplification curve is analyzed.According to image adjustment Baseline after analysis Start values, End values(User can voluntarily adjust according to actual conditions, and Start values can may be provided in 5 in 3~15, End values~ 20), Threshold values(Rn)Select at the flex point for amplification curve rise(Have just enter into increased logarithmic phase), click on Analyze Analyzed, then to the Ct values each reacted are recorded under Plate windows, result judgement is carried out according to criterion.Each mould Plate has 2 reactions, that is, has 2 Ct values, Ct values<35 for the positive, 35<Ct<40 be critical value(Gray area), no Ct values for the moon Property.If Ct values fall in gray area, it is necessary to the experiment that tries again again, to reaffirm.Ct=0 of 0.5ul templates is added, greatly In 0.5ul, there are Ct values, show the detection sensitivity of the kit between 100-500copy;
As a result it is as follows:
COMTwp probes, pCOMTW templates:
    Ct values
0.5ul 50copy 0
1ul 100copy 33. 84
2ul 200copy 32.41
4ul 400copy 31.86
COMTmp probes, pCOMTM templates:
    Ct values
0.5ul 50copy 0
1ul 100copy 33.33
2ul 200copy 32.13
4ul 400copy 31.26
4. the rs1456031 sites of FOXP2 genes, the implementation of sensitivity technique experiment is similar with the above method, detection sensitivity It is and very high.
Embodiment 4
1st, the stability of the present invention is detected with genetic engineering recombinant plasmid, COMT mutators are carried through genetic engineering structure Plasmid as detection object, plasmid pCOMTM is the plasmid with RS4680 mutation;Plasmid pCOMTW is with wild type The plasmid of COMT genes.These plasmids are dissolved in TE buffer solutions(10mMTris-HCl, 1mMEDTA, PH=8.0)In, through ultraviolet point Light photometric determination quality and concentration, calculate plasmid copy number, with TE buffer solutions dilute obtain 1000 copies/ul pCOMTM and PCOMTW plasmid solutions, then as PCR reaction templates.
2nd, the synthesis of COMT specific primers and probe:According to people's COMT gene mutation sites, 2 probes, 5 ' end marks are designed FAM (green fluorescence) or VIC (yellow fluorescence), 3 ' end mark MGB quenching groups;The limited public affairs of brilliant molecular biosciences science and technology are dodged by Shanghai Department's synthesis and mark.Probe sequence and mark such as embodiment 2.
3rd, Fluorescence PCR:Using 1000 good copies of above-mentioned dilution/ul pCOMTM and pCOMTW plasmids as template, point Do not take 5ul to do to react, 10 multiple holes are done in each reaction, to detect the repeatability of this kit.For example above-mentioned embodiment of reaction system 1, the template simply added is different with ddH2O.
Reacted using ABI7500 line fluorescent quantitative PCR apparatus, specific response procedures set as follows:
94℃,5min; (94℃,20s;60℃,30s) x40;The detection of Fam/VIC fluorescence signals is set at 72 degree
Analysis of test results:
Confirm non-selected correction fluorescence reference, amplification curve is analyzed.According to image adjustment Baseline after analysis Start values, End values(User can voluntarily adjust according to actual conditions, and Start values can may be provided in 5 in 3~15, End values~ 20), Threshold values(Rn)Select at the flex point for amplification curve rise(Have just enter into increased logarithmic phase), click on Analyze Analyzed, then to the Ct values each reacted are recorded under Plate windows, result judgement is carried out according to criterion.Each mould Plate has 2 reactions, that is, has 2 Ct values, Ct values<35 for the positive, 35<Ct<40 be critical value(Gray area), no Ct values for the moon Property.If Ct values fall in gray area, it is necessary to the experiment that tries again again, to reaffirm.Final Ct values are basically identical, and difference is not To 0. 5 circulations, the result shows stabilization of kit, repeatability very well.
As a result it is as follows:
COMTwp probes, pCOMTW templates:
5ul,5000copy Ct values
Parallel 1 28.34
Parallel 2 28.48
Parallel 3 28.35
Parallel 4 28.24
Parallel 5 28.44
Parallel 6 28.27
Parallel 7 28.49
Parallel 8 28.15
Parallel 9 28.23
Parallel 10 28.71
COMTmp probes, pCOMTM templates:
5ul,5000copy Ct values
Parallel 1 28.24
Parallel 2 28.66
Parallel 3 28.63
Parallel 4 28.34
Parallel 5 28.42
Parallel 6 28.28
Parallel 7 28.63
Parallel 8 28.15
Parallel 9 28.41
Parallel 10 28.46
4. the rs1456031 sites of FOXP2 genes, the implementation of Detection of Stability experiment is similar with the above method, as a result and steady It is qualitative fine.
Embodiment 5:
1st, 10 people's samples through the authenticated rs4680 sites of direct sequencing are extracted(From swab, fresh and freezing whole blood With the source such as body fluid), it is as follows to detect rs4680 catastrophes through direct sequencing:
  RS4680 sites
Clinical sample 1 Saltant type
Clinical sample 2 Saltant type
Clinical sample 3 Wild type
Clinical sample 4 Wild type
Clinical sample 5 Wild type
Clinical sample 6 Saltant type
Clinical sample 7 Wild type
Clinical sample 8 Saltant type
Clinical sample 9 Wild type
Clinical sample 10 Saltant type
2nd, it is as follows using specific primer and fluorescence probe detection the clinical sample step of the present invention:
(1)The acquisition of genomic DNA:Extracted according to QIAGEN poba gene group extracts kits operation instruction, the DNA matter of acquisition Amount is qualified through UV spectrophotometer measuring, then by each sample genomic dna concentration dilution to 30ng/ul, as follow-up PCR Template.
(2)Real-time fluorescence PCR reacts:With reference to embodiment 1,2,3
Reacted using ABI7500 line fluorescent quantitative PCR apparatus, specific response procedures set as follows:
94℃,5min; (94℃,20s;60℃,30s) x40;The detection of Fam/VIC fluorescence signals is set at 72 degree.
Analysis of test results:
Confirm non-selected correction fluorescence reference, amplification curve is analyzed.According to image adjustment Baseline after analysis Start values, End values(User can voluntarily adjust according to actual conditions, and Start values can may be provided in 5 in 3~15, End values~ 20), Threshold values(Rn)Select at the flex point for amplification curve rise(Have just enter into increased logarithmic phase), click on Analyze Analyzed, then to the Ct values each reacted are recorded under Plate windows, result judgement is carried out according to criterion.Each mould Plate has 2 reactions, that is, has 2 Ct values, Ct values<35 for the positive, 35<Ct<40 be critical value(Gray area), no Ct values for the moon Property.If Ct values fall in gray area, it is necessary to the experiment that tries again again, to reaffirm.
As a result it is as follows:
  RS4680W RS4680M
Clinical sample 1 0 25.42
Clinical sample 2 0 27.38
Clinical sample 3 27.77 0
Clinical sample 4 25.56 0
Clinical sample 5 26.93 0
Clinical sample 6 0 24.41
Clinical sample 7 26.74 0
Clinical sample 8 0 25.22
Clinical sample 9 25.46 0
Clinical sample 10 0 25.85
Testing result shows:The mutation that the COMT mutational sites obtained with the primer and probe of the present invention obtain with direct sequencing Site is consistent.Compared with direct sequencing, the present invention can complete to detect in 80 minutes, experimental result concordance rate 100%, but Experimental period at least saves 2-3 days.
The rs1456031 sites of FOXP2 genes, the implementation of actual sample test experience is similar with the above method, as a result Comply fully with PCR sequencing PCR.
Primer probe sequence list:
SEQIDNo.1 COMTF ACCCAGCGGATGGTGGAT
SEQIDNo.2 COMTR ACAACGGGTCAGGCATGC
SEQIDNo.3 COMTwp CGCTGGCATGAAGGAC
SEQIDNo.4 COMTmp CGCTGGCgTGAAGGAC
SEQIDNo.5 FOXP2F TTACATGCTTCCCTTTAGTTAATAAT
SEQIDNo.6 FOXP2R TCTGCTATCCTGTAATAATAAGCATAC
SEQIDNo.7 FOXP2wp TTGTGATTGTACGCCTACAAA
SEQIDNo.8 FOXP2mp TTGTGATTGCACGCCTACAAA

Claims (9)

1. the probe in the rs4680 sites for detecting COMT genes, it is characterised in that the probe is for COMT genes The design of rs4680 sites, its sequence is:
COMTwp:Fam+CGCTGGCATGAAGGAC+MGB, as shown in SEQIDNo.3 or its complementary strand;And COMTmp: VIC+ CGCTGGCgTGAAGGAC+MGB, as shown in SEQIDNo.4 or its complementary strand;
The probe is used for the RS4680 mutation for detecting COMT genes, by analyzing amplification curve, records each reaction Ct values, come judgement sample whether occur COMT genes RS4680 mutation.
2. the primer of the RS4680 mutation for detecting COMT genes, it is characterised in that the primer is for COMT genes The design of RS4680 sites, its sequence is:
COMTF:ACCCAGCGGATGGTGGAT, as shown in SEQIDNo.1;
COMTR:ACAACGGGTCAGGCATGC, as shown in SEQIDNo.2;
The primer is used for the RS4680 mutation for detecting COMT genes, by analyzing amplification curve, records each reaction Ct values, come judgement sample whether occur COMT genes RS4680 mutation.
3. the probe in the rs1456031 sites for detecting FOXP2 genes, it is characterised in that the probe is to be directed to FOXP2 genes Rs1456031 sites design, its sequence is:
FOXP2wp:Fam+TTGTGATTGTACGCCTACAAA+MGB, as shown in SEQIDNo.7 or its complementary strand;With FOXP2mp:VIC+TTGTGATTGCACGCCTACAAA+MGB, as shown in SEQIDNo.8 or its complementary strand;
The probe is used for the rs1456031 site mutations for detecting FOXP2 genes, by analyzing amplification curve, record The Ct values each reacted, carry out the rs1456031 site mutations whether judgement sample occurs FOXP2 genes.
4. the primer of the rs1456031 site mutations for detecting FOXP2 genes, it is characterised in that the primer is to be directed to FOXP2 The rs1456031 sites design of gene, its sequence is:
FOXP2F:TTACATGCTTCCCTTTAGTTAATAAT, as shown in SEQIDNo.5;
FOXP2R:TCTGCTATCCTGTAATAATAAGCATAC, as shown in SEQIDNo.6;
The primer is used for the rs1456031 site mutations for detecting FOXP2 genes, by analyzing amplification curve, record The Ct values each reacted, carry out the rs1456031 site mutations whether judgement sample occurs FOXP2 genes.
A kind of 5. PCR amplifications of the rs1456031 site mutations of RS4680 mutation for being used to detect COMT genes and FOXP2 genes Kit, it includes dNTP, Mg2+, Taq DNA polymerase, Tris-HCl systems, specific primer, wild-type probe, saltant type Probe, it is characterised in that:
The wild-type probe, saltant type probe are the probe as described in claim 1, claim 3.
6. the specific primer is the primer as described in claim 2, claim 4.
7. the kit is used for RS4680 mutation and the rs1456031 site mutations of FOXP2 genes for detecting COMT genes, lead to Cross and amplification curve is analyzed, record the Ct values each reacted, carry out judgement sample the RS4680 of COMT genes whether occurs to dash forward Become the rs1456031 site mutations with FOXP2 genes.
8. application of the probe in inborn gene detecting kit as described in claim 1, claim 3.
9. application of the primer in inborn gene detecting kit as described in claim 2, claim 4.
CN201710839183.XA 2017-10-30 2017-10-30 A kind of probe, primer and kit for detecting inborn gene Pending CN107447032A (en)

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CN106086179A (en) * 2016-06-16 2016-11-09 北京东方亚美基因科技研究院有限公司 A kind of gene tester assessing child's natural endowment ability
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Application publication date: 20171208