CN106831991A - The nano antibody of anti-c Myc labels - Google Patents

The nano antibody of anti-c Myc labels Download PDF

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CN106831991A
CN106831991A CN201710100436.1A CN201710100436A CN106831991A CN 106831991 A CN106831991 A CN 106831991A CN 201710100436 A CN201710100436 A CN 201710100436A CN 106831991 A CN106831991 A CN 106831991A
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涂追
付金衡
吴红静
许杨
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Abstract

本发明属于基因工程领域,具体为针对c‑Myc标签的单域重链抗体,其具有SEQ ID NO.:1所示的氨基酸序列,可用于免疫检测、抗原富集纯化等领域。本发明所提供的氨基酸序列可以作为前体,通过随机或定点突变技术进行改造,能够获得性质(亲和性、特异性、稳定性等)更好的突变体,用来发展进一步用于医药、工业、农业的蛋白质或多肽。The invention belongs to the field of genetic engineering, specifically a single-domain heavy chain antibody directed against the c-Myc tag, which has the amino acid sequence shown in SEQ ID NO.: 1, and can be used in the fields of immunoassay, antigen enrichment and purification, and the like. The amino acid sequence provided by the present invention can be used as a precursor to be modified by random or site-directed mutagenesis techniques to obtain mutants with better properties (affinity, specificity, stability, etc.) for development and further use in medicine, Industrial, agricultural proteins or peptides.

Description

抗c-Myc标签的纳米抗体Nanobodies against c-Myc tag

技术领域technical field

本发明涉及单域重链抗体技术(又称纳米抗体技术),以及基因工程抗体技术,特别是针对c-Myc标签的单域重链抗体或多肽。The present invention relates to single domain heavy chain antibody technology (also known as nanobody technology), and genetic engineering antibody technology, especially single domain heavy chain antibody or polypeptide directed at c-Myc tag.

技术背景technical background

c-Myc标签蛋白的发现源于1985年Evan制备获得了一株针对人原癌基因产物Myc蛋白的单克隆抗体9E10,此后研究发现该抗体识别的表位由10个氨基酸残基组成,其序列为Glu-Gln-Lys-Leu-Ile-Ser-Glu-Glu-Asp-Leu,并且这10个氨基酸与其它蛋白融合表达后依然能够保持很强的抗原活性,可以被相应抗体识别,而且不受到蛋白框架的影响。因此,c-Myc标签系统广泛应用于免疫学检测、细胞成像、亲和纯化以及蛋白质工程等领域。The discovery of the c-Myc tagged protein originated in 1985 when Evan prepared a monoclonal antibody 9E10 against the human proto-oncogene product Myc protein. Later studies found that the epitope recognized by the antibody consists of 10 amino acid residues, and its sequence It is Glu-Gln-Lys-Leu-Ile-Ser-Glu-Glu-Asp-Leu, and these 10 amino acids can still maintain strong antigenic activity after fusion expression with other proteins, and can be recognized by corresponding antibodies without being affected by The effect of the protein framework. Therefore, the c-Myc tag system is widely used in the fields of immunological detection, cell imaging, affinity purification and protein engineering.

本发明公开了一种可以与c-Myc标签特异性结合的单域重链抗体(即纳米抗体,下同),可用于c-Myc标签融合蛋白的检测及纯化。The invention discloses a single-domain heavy chain antibody (ie nanobody, the same below) that can specifically bind to a c-Myc tag, which can be used for detection and purification of c-Myc tag fusion proteins.

目前市场上已经有针对c-Myc标签的单克隆或多克隆抗体用于检测,但单克隆抗体的研发和生产过程及其繁琐和复杂,多克隆抗体来源有限。相比之下,单域重链抗体仅由一个结构域组成,具有耐酸碱、耐高温、特异性高、分子量小和可大规模生产等优点,用单域重链抗体作为配基制备的纯化介质具有成本低、可重复使用等优点,应用前景广阔。At present, there are monoclonal or polyclonal antibodies against c-Myc tag in the market for detection, but the development and production process of monoclonal antibodies is extremely cumbersome and complicated, and the sources of polyclonal antibodies are limited. In contrast, single-domain heavy-chain antibodies consist of only one domain, and have the advantages of acid and alkali resistance, high temperature resistance, high specificity, small molecular weight, and large-scale production. The purification medium has the advantages of low cost and reusability, and has broad application prospects.

发明内容Contents of the invention

本发明的目的是提供针对c-Myc标签的单域重链抗体,可以被用于制备检测和纯化c-Myc标签的试剂和工具。The purpose of the present invention is to provide a single domain heavy chain antibody against c-Myc tag, which can be used to prepare reagents and tools for detecting and purifying c-Myc tag.

本发明提供一个针对c-Myc标签的单域重链抗体(即本发明一种针对c-Myc标签的纳米抗体,下同),具有SEQ ID NO.:1所示的氨基酸序列。其氨基酸序列的IMGT编号和结构域的划分包括四个框架区(Framework region,FR)和三个互补决定区(Complementarity-determining region,CDR)。The present invention provides a single-domain heavy chain antibody against c-Myc tag (that is, a nanobody against c-Myc tag according to the present invention, the same below), which has the amino acid sequence shown in SEQ ID NO.:1. The IMGT numbering of its amino acid sequence and the division of structural domains include four framework regions (Framework region, FR) and three complementarity-determining regions (Complementarity-determining region, CDR).

本发明提供一个核酸分子,其特征是编码SEQ ID NO.:1,通过遗传密码子可以随时获得该核酸分子的具体序列。The present invention provides a nucleic acid molecule, which is characterized in that it encodes SEQ ID NO.: 1, and the specific sequence of the nucleic acid molecule can be obtained at any time through the genetic code.

本发明还提供一个核酸分子,其特征是编码SEQ ID NO.:1部分结构域,通过遗传密码子可以随时获得该核酸分子的具体序列。可以为SEQ ID NO.:2核酸分子。The present invention also provides a nucleic acid molecule, which is characterized in that it encodes a partial structural domain of SEQ ID NO.: 1, and the specific sequence of the nucleic acid molecule can be obtained at any time through the genetic code. It may be the nucleic acid molecule of SEQ ID NO.:2.

本发明所提供的核苷酸序列或者至少部分序列可以通过合适的表达系统进行表达以得到相应的蛋白质或多肽。这些表达系统包括细菌,酵母菌,丝状真菌,动物细胞,昆虫细胞,植物细胞,或无细胞表达系统。The nucleotide sequence or at least a part of the sequence provided by the present invention can be expressed through a suitable expression system to obtain the corresponding protein or polypeptide. These expression systems include bacteria, yeast, filamentous fungi, animal cells, insect cells, plant cells, or cell-free expression systems.

本发明还提供一种载体,包含所述核酸序列。由于遗传密码子具有简并性,该核酸序列可以根据不同的应用目的而不同。The present invention also provides a vector comprising the nucleic acid sequence. Due to the degeneracy of the genetic code, the nucleic acid sequence may vary according to different application purposes.

本发明还提供一种宿主细胞,包括所述蛋白质或表达载体。The present invention also provides a host cell including the protein or expression vector.

本发明还提供一种检测c-Myc标签的方法,含有本发明所述针对c-Myc标签的单域重链抗体。基于本发明提供的针对c-Myc标签的单域重链抗体与c-Myc标签特异性结合的能力,建立c-Myc标签的检测方法。其中,优选的方法包括酶联免疫吸附法(Enzyme-linkedimmunosorbent assay,ELISA),荧光免疫法(Fluoroimmunoassay,FIA),免疫芯片法,亲和层析法和免疫层析法等。The present invention also provides a method for detecting c-Myc tag, comprising the single domain heavy chain antibody against c-Myc tag of the present invention. A c-Myc tag detection method is established based on the ability of the c-Myc tag-specific single domain heavy chain antibody provided by the present invention to specifically bind to the c-Myc tag. Among them, preferred methods include enzyme-linked immunosorbent assay (Enzyme-linkedimmunosorbent assay, ELISA), fluorescence immunoassay (Fluoroimmunoassay, FIA), immunochip method, affinity chromatography and immunochromatography, etc.

本发明所提供的氨基酸序列可以作为前体,通过随机或定点突变技术进行改造,能够获得性质(水溶性、稳定性、亲和力以及特异性等)更好的突变体,该突变体能与c-Myc标签特异性结合。The amino acid sequence provided by the present invention can be used as a precursor to be modified by random or site-directed mutagenesis to obtain mutants with better properties (water solubility, stability, affinity and specificity, etc.), which can interact with c-Myc Tag-specific binding.

本发明还涉及前述针对c-Myc标签的单域重链抗体在免疫检测、富集以及纯化中的应用。这些免疫检测指的是非疾病诊断治疗目的的免疫检测。The present invention also relates to the application of the aforementioned single domain heavy chain antibody against c-Myc tag in immunodetection, enrichment and purification. These immunoassays refer to immunoassays for non-disease diagnosis and treatment purposes.

本发明还涉及针对c-Myc标签的免疫亲和吸附材料,包括载体,搭载在载体上的配基,其特征在于该材料以针对c-Myc标签的纳米抗体作为配基,所述针对c-Myc标签的纳米抗体具有SEQ ID NO.:1所示的氨基酸序列。载体材料不限于琼脂糖凝胶,也可以选用硅球、纳米磁珠等。The present invention also relates to an immunoaffinity adsorption material for c-Myc tag, including a carrier, and a ligand carried on the carrier, which is characterized in that the material uses a nanobody for c-Myc tag as a ligand, and the c-Myc tag is used as a ligand. The Myc-tagged nanobody has the amino acid sequence shown in SEQ ID NO.:1. The carrier material is not limited to agarose gel, and silicon spheres, nano magnetic beads, etc. can also be used.

本发明所叙述的一些术语具有如下含义:Some terms described in the present invention have the following meanings:

结构域:蛋白质三级结构的基本结构单位,通常具有一定的功能。Domain: The basic structural unit of the tertiary structure of a protein, usually with a certain function.

IMGT编号:IMGT数据库(The International ImMunoGeneTics Datbase)中的一种已经标准化的抗体氨基酸序列编号方法。具体编号方法可以参考文献(Ehrenman,F.,Q.Kaas,et.al.(2010).IMGT/3D structure-DB and IMGT/DomainGapAlign:adatabaseand a tool for immunoglobulins or antibodies,T cell receptors,MHC,IgSF and MhcSF.Nucleic Acids Res 38(Database issue):D301-307.Lefranc,M.P.,C.Pommie,et al.(2003).IMGT unique numbering for immunoglobulin and T cellreceptor variable domains and Igsuperfamily V-like domains Dev comp Immunol27(1):55-77.)中的描述。IMGT numbering: A standardized antibody amino acid sequence numbering method in the IMGT database (The International ImMunoGeneTics Datbase). For the specific numbering method, please refer to the literature (Ehrenman, F., Q.Kaas, et.al. (2010). IMGT/3D structure-DB and IMGT/DomainGapAlign: adatabase and a tool for immunoglobulins or antibodies, T cell receptors, MHC, IgSF and MhcSF.Nucleic Acids Res 38(Database issue):D301-307.Lefranc,M.P.,C.Pommie,et al.(2003).IMGT unique numbering for immunoglobulin and T cell receptor variable domains and Igsuperfamily V-like domains Dev comp Immunol27 (1):55-77.) described in.

密码子(codon):又称为三连体密码子(triplet code),指对应于某种氨基酸的核苷酸三联体。在转译过程中决定该种氨基酸插入生长中多肽链的位置。Codon: also known as triplet codon (triplet code), refers to a nucleotide triplet corresponding to a certain amino acid. The insertion of this amino acid into the growing polypeptide chain is determined during translation.

具体实施方式detailed description

下面通过单域重链抗体(多肽)的制备、分析及应用,对本发明做进一步说明,这些具体实施例不应以任何方式被解释为限制本发明的应用范围。The present invention will be further described through the preparation, analysis and application of single domain heavy chain antibody (polypeptide) below, and these specific examples should not be interpreted as limiting the scope of application of the present invention in any way.

实施例1:Example 1:

抗c-Myc标签单域重链抗体(即针对c-Myc标签的单域重链抗体)免疫文库的构建Construction of an immune library of anti-c-Myc tag single domain heavy chain antibody (ie single domain heavy chain antibody against c-Myc tag)

将c-Myc标签与牛血清白蛋白(Bovine serum albumin,BSA)共价偶联,得到c-Myc人工抗原c-Myc-BSA,取300μg c-Myc-BSA与弗氏完全佐剂乳化后,对羊驼(Lama pacos)进行皮下多点注射免疫。加强免疫采用150μg c-Myc-BSA与弗氏不完全佐剂乳化,间隔2周进行,每次免疫7天后静脉取血,采用间接ELISA法测定血清效价,选择血清效价最高的样品分离淋巴细胞,提取RNA。The c-Myc tag was covalently coupled to bovine serum albumin (BSA) to obtain the c-Myc artificial antigen c-Myc-BSA. After emulsifying 300 μg of c-Myc-BSA with Freund's complete adjuvant, Alpacas (Lama pacos) were immunized by subcutaneous multipoint injection. For booster immunization, 150 μg c-Myc-BSA was emulsified with Freund's incomplete adjuvant at intervals of 2 weeks. Blood was collected from the vein 7 days after each immunization, and the serum titer was determined by indirect ELISA method. The sample with the highest serum titer was selected to separate lymphocytes. cells, RNA was extracted.

RNA的提取参照TAKARA公司RNAiso试剂说明书进行。以RNA为模板,oligo dT为引物,参照TAKARA公司反转录酶说明书合成cDNA第一链。The extraction of RNA was carried out according to the instruction manual of RNAiso reagent from TAKARA company. Using RNA as a template and oligo dT as a primer, the first strand of cDNA was synthesized according to the instructions of TAKARA reverse transcriptase.

采用PrimeSTAR高保真DNA聚合酶,经巢式PCR获得重链抗体的可变区编码基因(采用的引物见表1)。第一轮PCR分别以引物AlpVh-LD和CH2-R扩增cDNA,反应条件为,98℃,10s,55℃,20s,72℃,1min,20个循环,98℃,10s,68℃,1min,72℃延伸10min。The gene encoding the variable region of the heavy chain antibody was obtained by nested PCR using PrimeSTAR high-fidelity DNA polymerase (see Table 1 for the primers used). In the first round of PCR, primers AlpVh-LD and CH2-R were used to amplify cDNA respectively, and the reaction conditions were 98°C, 10s, 55°C, 20s, 72°C, 1min, 20 cycles, 98°C, 10s, 68°C, 1min , 72°C for 10 min.

将第一轮PCR产物用1.2%的琼脂糖凝胶电泳,回收600bp~750bp的DNA片段,作为第二轮PCR的模板,分别用引物AlpVh-SfiI和AlpVHHR1-NotI,AlpVh-SfiI和AlpVHHR2-NotI,进行扩增,反应条件为,98℃,10s,50℃,20s,72℃,40s,5个循环,98℃,10s,68℃,40s,30个循环,72℃延伸10min。经DNA片段回收试剂盒回收、定量,于-20℃保存备用。将噬菌粒pHEN1和PCR扩增产物分别用Sfi I、Not I双酶切,经琼脂糖凝胶回收、定量后,以1∶3摩尔比,在16℃,过夜连接。Use 1.2% agarose gel electrophoresis on the first round of PCR products to recover DNA fragments of 600bp to 750bp as templates for the second round of PCR, using primers AlpVh-SfiI and AlpVHHR1-NotI, AlpVh-SfiI and AlpVHHR2-NotI respectively , amplified, the reaction conditions are, 98°C, 10s, 50°C, 20s, 72°C, 40s, 5 cycles, 98°C, 10s, 68°C, 40s, 30 cycles, 72°C extension 10min. The DNA fragments were recovered and quantified by a DNA fragment recovery kit, and stored at -20°C for future use. The phagemid pHEN1 and the PCR amplification product were digested with Sfi I and Not I respectively, recovered and quantified by agarose gel, then ligated overnight at 16°C at a molar ratio of 1:3.

表1文库构建及鉴定所用的引物Table 1 Primers used for library construction and identification

注:下划线表示限制性内切酶识别序列Note: The underline indicates the restriction endonuclease recognition sequence

连接产物经乙醇沉淀后,溶于10μL无菌水,分十次进行电穿孔转化大肠杆菌TG1。取10μL电击、培养后的菌液倍比稀释,涂布氨苄青霉素2×YT培养板,计算库容。其余部分全部涂布于24cm×24cm氨苄青霉素2×YT培养板,37℃,倒置培养13~16h。用10mL,2×YT培养基将培养板上的菌苔刮洗后,加入终浓度20~30%甘油,分装,-80℃保存备用。After ethanol precipitation, the ligated product was dissolved in 10 μL sterile water, and electroporated ten times to transform Escherichia coli TG1. Take 10 μL of the electroshocked and cultured bacterial solution and dilute it in multiples, spread ampicillin on a 2×YT culture plate, and calculate the storage capacity. All the rest were spread on a 24cm×24cm ampicillin 2×YT culture plate, cultured upside down at 37°C for 13-16 hours. Scrape and wash the bacterial lawn on the culture plate with 10 mL of 2×YT medium, add glycerol with a final concentration of 20-30%, aliquot, and store at -80°C for later use.

根据计算的库容量结果,接种10倍库容量的活细胞于20mL的2×YT(含2%葡萄糖,100μg/mL氨苄青霉素),37℃,200r/min培养至OD600达0.5,按感染复数20∶1加入辅助噬菌体,37℃,200r/min,60min。将培养物离心,用50mL的2×YT(含100μg/mL氨苄青霉素和50μg/mL卡那霉素)重悬沉淀,37℃,200r/min过夜培养后,8000rpm离心取上清,加入5×PEG/NaCl溶液,冰上放置1.5h或4℃过夜,8000rpm离心30min,重悬沉淀于含10%甘油的磷酸缓冲液(PBS,0.01M,pH 7.4),即得到抗c-Myc标签单域重链抗体免疫文库,取10μL测定滴度,其余分装于-80℃保存备用。According to the calculated pool capacity results, inoculate 10 times the pool volume of living cells in 20 mL of 2×YT (containing 2% glucose, 100 μg/mL ampicillin), and culture at 37°C and 200 r/min until the OD 600 reaches 0.5, according to the multiplicity of infection Add helper phage 20:1, 37°C, 200r/min, 60min. Centrifuge the culture, resuspend the pellet with 50mL of 2×YT (containing 100μg/mL ampicillin and 50μg/mL kanamycin), cultivate overnight at 37°C, 200r/min, centrifuge at 8000rpm to take the supernatant, add 5× PEG/NaCl solution, put it on ice for 1.5h or overnight at 4°C, centrifuge at 8000rpm for 30min, resuspend the pellet in phosphate buffer solution (PBS, 0.01M, pH 7.4) containing 10% glycerol, and obtain the anti-c-Myc tag single domain For the heavy chain antibody immune library, take 10 μL to measure the titer, and store the rest at -80°C for future use.

实施例2:Example 2:

抗c-Myc标签单域重链抗体的淘选与鉴定Panning and Identification of Anti-c-Myc Tag Single Domain Heavy Chain Antibody

采用固相亲和淘选的方法从实施例1所得抗c-Myc标签单域重链抗体免疫文库中淘选针对c-Myc标签的单域重链抗体。向每个酶标孔中加入120μL用PBS稀释的Myc-GST融合蛋白(Myc标签与谷胱甘肽融合的蛋白),4℃,包被过夜,每轮淘选的包被浓度分别为100,75,50μg/mL;吸出包被液,PBS洗板5次,每孔加入300μL 3%BSA-PBS,37℃,封闭2h;PBS洗板5次,加入100μL噬菌体抗体文库(约含1×1011CFU),37℃,孵育2.0h;吸出未结合的噬菌体,用PBST(含0.5%Tween-20)洗板3-5次(逐轮增加5次),再用PBS洗板15-25次;以100μL洗脱液(甘氨酸-盐酸,pH 2.2)洗脱吸附在酶标孔中的噬菌体,用35μL Tris-HCl(1mol/L,pH8.0)中和洗脱物,取10μL用于滴度测定,其余125μL洗脱物扩增后用于下一轮淘选。The single domain heavy chain antibody against c-Myc tag was panned from the anti-c-Myc tag single domain heavy chain antibody immune library obtained in Example 1 by solid phase affinity panning. Add 120 μL of Myc-GST fusion protein (a protein fused with Myc tag and glutathione) diluted with PBS to each enzyme-labeled well, and coat overnight at 4°C. The coating concentration for each round of panning is 100, 75, 50 μg/mL; aspirate the coating solution, wash the plate 5 times with PBS, add 300 μL 3% BSA-PBS to each well, block for 2 hours at 37°C; wash the plate 5 times with PBS, add 100 μL phage antibody library (about 1×10 11 CFU), 37°C, incubate for 2.0 h; aspirate unbound phage, wash the plate with PBST (containing 0.5% Tween-20) for 3-5 times (increase 5 times for each round), and then wash the plate with PBS for 15-25 times ;Elute the phage adsorbed in the enzyme-labeled well with 100 μL eluent (glycine-hydrochloric acid, pH 2.2), neutralize the eluate with 35 μL Tris-HCl (1mol/L, pH 8.0), take 10 μL for drop The remaining 125 μL of the eluate was amplified and used for the next round of panning.

经四轮淘选后,采用辅助噬菌体KM13对随机挑取的单克隆进行救援,分别得到展示抗体可变区的噬菌体颗粒,再用间接phage-ELISA测定噬菌体颗粒的结合活性和特异性,实验设定对照,具体加样步骤见表2。After four rounds of panning, the helper phage KM13 was used to rescue the randomly selected monoclonals to obtain phage particles displaying antibody variable regions, and then the binding activity and specificity of the phage particles were determined by indirect phage-ELISA. For the control, see Table 2 for the specific sample addition steps.

表2间接phage-ELISA加样表Table 2 Indirect phage-ELISA loading table

将ELISA阳性克隆送生物技术服务公司进行序列测定,得到插入片段的DNA序列,其编码针对c-Myc标签的单域重链抗体。The ELISA positive clones were sent to the Biotechnology Service Company for sequence determination to obtain the DNA sequence of the insert fragment, which encodes a single domain heavy chain antibody against the c-Myc tag.

DNA序列(SEQ ID NO.:2):DNA sequence (SEQ ID NO.: 2):

CAGTTGCAGCTCGTGGAGTCAGGGGGAGGCTTGGTGCAGCCTGGGGAGTCACTGACGCTCACCTGTGTAGCCTCAGGCGGCACTTTGGAGAATTGGGATATAGCCTGGTTCCGTCAGGCCCCAGGGAAGGAGCGTGAGGGGGTCGCATATTTTAGTAGTGATGGTATTAGAAATTATGGAGACTCCATGAGGGGCCGATTCAAAATCTCTAGAGACAACGCCAAGAACACAGCGTGGCTGCAGATGAATCGCCTGAGCGTTGAAGACACGTCCACATATTATTGTGCGGCCAAAGAAAGGGTCGGACGTGCATGGCGAAATGATGGACTTTACCGCTACTGGGGCCAGGGGACCCAGGTCACCGTCTCCTCACAGTTGCAGCTCGTGGAGTCAGGGGGAGGCTTGGTGCAGCCTGGGGAGTCACTGACGCTCACCTGTGTAGCCTCAGGCGGCACTTTGGAGAATTGGGATATAGCCTGGTTCCGTCAGGCCCCAGGGAAGGAGCGTGAGGGGGTCGCATATTTTAGTAGTGATGGTATTAGAAATTATGGAGACTCCATGAGGGGCCGATTCAAAATCTCTAGAGACAACGCCAAGAACACAGCGTGGCTGCAGATGAATCGCCTGAGCGTTGAAGACACGTCCACATATTATTGTGCGGCCAAAGAAAGGGTCGGACGTGCATGGCGAAATGATGGACTTTACCGCTACTGGGGCCAGGGGACCCAGGTCACCGTCTCCTCA

编码具有SEQ ID NO.:1所示的氨基酸序列:The encoding has the amino acid sequence shown in SEQ ID NO.:1:

QLQLVESGGGLVQPGESLTLTCVASGGTLENWDIAWFRQAPGKEREGVAYFSSDGIRNYGDSMRGRFKISRDNAKNTAWLQMNRLSVEDTSTYYCAAKERVGRAWRNDGLYRYWGQGTQVTVSS。QLQLVESGGGLVQPGESLTLTTCVASGGTLENWDIAWFRQAPGKEREGVAYFSSDGIRNYGDSMRGRFKISRDNAKNTAWLQMNRLSVEDTSTYYCAAKERVGRAWRNDGLYRYWGQGTQVTVSS.

实施例3:Example 3:

抗c-Myc标签单域重链抗体的规模制备Scale Production of Anti-c-Myc Tag Single Domain Heavy Chain Antibody

编码抗c-Myc标签单域重链抗体的DNA片段的获取:1.采用限制性内切酶SfiI/NotI,双酶切噬菌粒pHEN-anti-c-Myc单域重链抗体基因,琼脂糖凝胶电泳回收抗c-Myc标签单域重链抗体基因;2.直接将抗c-Myc标签单域重链抗体编码序列送生物技术服务公司进行化学合成;3.设计特异性引物,通过PCR技术从羊驼(Lama pacos)来源的cDNA库中扩增。Obtaining the DNA fragment encoding the anti-c-Myc tag single-domain heavy-chain antibody: 1. Using restriction endonuclease SfiI/NotI, double-digest the phagemid pHEN-anti-c-Myc single-domain heavy-chain antibody gene, and agar Glycogel electrophoresis to recover the anti-c-Myc tag single domain heavy chain antibody gene; 2. Directly send the anti-c-Myc tag single domain heavy chain antibody coding sequence to a biotechnology service company for chemical synthesis; 3. Design specific primers, through PCR technology amplifies from a cDNA library derived from alpaca (Lama pacos).

将得到的抗c-Myc标签标签单域重链抗体基因片段克隆至表达载体pET25-flag(已将载体本身所带c-Myc标签替换为Flag标签:DYKDDDDK),经PCR和酶切鉴定,构建完成抗c-Myc标签单域重链抗体的大肠杆菌表达质粒。The obtained anti-c-Myc tag single domain heavy chain antibody gene fragment was cloned into the expression vector pET25-flag (the c-Myc tag carried by the vector itself was replaced with the Flag tag: DYKDDDDK), identified by PCR and enzyme digestion, and constructed Complete the E. coli expression plasmid of anti-c-Myc tag single domain heavy chain antibody.

将表达质粒转化至大肠杆菌rosetta,挑取单菌落进行诱导表达。将单菌落接入5mL LB-A(Luria-Bertani broth with 100μg/mL ampicillin)液体培养基中,37℃、220r/min振荡培养12h;以1%培养基体积的接种量将其转接到50mL LB-A液体培养基中,37℃、220r/min振荡培养至OD600达到0.5(约需3~3.5h),加入终浓度0.1mM的IPTG,30℃、200r/min诱导培养。The expression plasmid was transformed into Escherichia coli rosetta, and a single colony was picked for induced expression. Insert a single colony into 5mL LB-A (Luria-Bertani broth with 100μg/mL ampicillin) liquid medium, shake at 37°C and 220r/min for 12h; transfer it to 50mL In LB-A liquid medium, shake culture at 37°C and 220r/min until OD 600 reaches 0.5 (about 3-3.5h), add IPTG with a final concentration of 0.1mM, induce culture at 30°C and 200r/min.

诱导培养物8000r/min离心,在细胞沉淀中加入25mL磷酸缓冲液(pH 7.4)混匀,8000r/min离心,去上清,保留细胞沉淀;在细胞沉淀中加入15mL相同缓冲液,混匀,冰上超声波细胞破碎处理,超声破碎条件为200W,破碎2s,间歇5s,共250个循环,在4℃下对细胞破碎物8000r/min离心15min,取上清进行亲和层析纯化和SDS-PAGE电泳分析,或在上清中加入终浓度20%的甘油,混匀,保存于-20℃冰柜待用。Induce the culture to centrifuge at 8000r/min, add 25mL of phosphate buffer (pH 7.4) to the cell pellet and mix well, then centrifuge at 8000r/min, remove the supernatant and keep the cell pellet; add 15mL of the same buffer to the cell pellet, mix well, Ultrasonic cell disruption treatment on ice, the condition of ultrasonic disruption is 200W, 2s, 5s, 250 cycles in total, centrifuge the cell disrupted product at 8000r/min for 15min at 4°C, take the supernatant for affinity chromatography purification and SDS- For PAGE electrophoresis analysis, or add glycerol with a final concentration of 20% to the supernatant, mix well, and store in a -20°C freezer until use.

通过优化诱导表达条件(如宿主菌、表达载体、诱导培养时间、温度以及IPTG浓度等),可以进一步提高目的蛋白(单域重链抗体)表达量,为大量制备抗c-Myc标签单域重链抗体提供了途径。By optimizing the induced expression conditions (such as host bacteria, expression vectors, induction culture time, temperature, and IPTG concentration, etc.), the expression of the target protein (single domain heavy chain antibody) can be further increased, and it is possible to prepare a large number of anti-c-Myc tag single domain heavy chain antibodies. Chain antibodies provide access.

实施例4:Example 4:

抗c-Myc标签单域重链抗体的融合表达Fusion Expression of Anti-c-Myc Tag Single Domain Heavy Chain Antibody

将本发明抗c-Myc标签单域重链抗体基因克隆至融合表达载体pAP(含有碱性磷酸酶基因),经PCR和酶切鉴定,构建完成抗c-Myc标签单域重链抗体的碱性磷酸酶融合表达质粒。The anti-c-Myc tag single domain heavy chain antibody gene of the present invention is cloned into the fusion expression vector pAP (containing alkaline phosphatase gene), identified by PCR and enzyme digestion, and the base of the anti c-Myc tag single domain heavy chain antibody is constructed Sex phosphatase fusion expression plasmid.

碱性磷酸酶可以非特异性催化磷酸单酯水解生成无机磷酸和相应的醇、酚或糖类化合物。该酶常作为信号元件用于ELISA、免疫印迹、组织化学等检测方法。融合表达质粒将抗c-Myc标签单域重链抗体融合于碱性磷酸酶的N端,参考应用实例3中的表达方法,可以在大肠杆菌中表达、纯化出融合蛋白AP-anti-c-Myc标签单域重链抗体。Alkaline phosphatase can non-specifically catalyze the hydrolysis of phosphate monoesters to generate inorganic phosphate and corresponding alcohols, phenols or sugar compounds. This enzyme is often used as a signal element in detection methods such as ELISA, western blot, and histochemistry. Fusion expression plasmid The anti-c-Myc tag single domain heavy chain antibody is fused to the N-terminal of alkaline phosphatase, referring to the expression method in Application Example 3, the fusion protein AP-anti-c- Myc tag single domain heavy chain antibody.

实施例5:Example 5:

抗c-Myc标签单域重链抗体用于亲和纯化材料的制备Preparation of Anti-c-Myc Tag Single Domain Heavy Chain Antibody for Affinity Purification

1)c-Myc标签免疫亲和磁珠的小量制备1) Small-scale preparation of c-Myc-labeled immunoaffinity magnetic beads

采用纳米磁珠作为载体,偶联抗c-Myc标签单域重链抗体后,得到c-Myc标签免疫磁珠,具体制备方法如下:Using nano-magnetic beads as the carrier, after coupling the anti-c-Myc tag single domain heavy chain antibody, the c-Myc tag immunomagnetic beads are obtained. The specific preparation method is as follows:

取1mg羧基修饰的磁珠于离心管中,加入500μl活化缓冲液(10mM,NaH2PO4,pH6.0),涡旋混合均匀,磁力架回收磁珠,再用活化缓冲液洗涤3遍。分别加入2mg碳二亚胺(EDC)和N-羟基琥珀酰亚胺(NHS),涡旋混合后,静置25min。用偶联缓冲液(10mM,Na2HPO4,pH7.4)洗涤磁珠3遍,加入溶于偶联缓冲液的抗c-Myc标签单域重链抗体1mg,室温反应3.5h,用偶联缓冲液洗涤磁珠5次,加入500μl含1%(w/v)牛血清白蛋白(BSA)或1%(w/v)卵清蛋白(OVA)的偶联缓冲液封闭未反应的活性基团,室温反应35min。用偶联缓冲液洗涤磁珠5次,PBS溶液(10mM,pH 7.2,0.02%w/v,Na3N)重悬后保存于4℃。Take 1mg of carboxy-modified magnetic beads in a centrifuge tube, add 500μl activation buffer (10mM, NaH 2 PO 4 , pH 6.0), vortex to mix evenly, recover the magnetic beads with a magnetic stand, and wash 3 times with activation buffer. Add 2 mg of carbodiimide (EDC) and N-hydroxysuccinimide (NHS) respectively, vortex and mix, and let stand for 25 min. Wash the magnetic beads 3 times with coupling buffer (10 mM, Na 2 HPO 4 , pH 7.4), add 1 mg of anti-c-Myc tag single domain heavy chain antibody dissolved in coupling buffer, react at room temperature for 3.5 h, use coupling Wash the magnetic beads 5 times with coupling buffer, add 500 μl coupling buffer containing 1% (w/v) bovine serum albumin (BSA) or 1% (w/v) ovalbumin (OVA) to block unreacted activity Group, react at room temperature for 35 minutes. The magnetic beads were washed 5 times with coupling buffer, resuspended in PBS solution (10 mM, pH 7.2, 0.02% w/v, Na 3 N) and stored at 4°C.

2)c-Myc标签免疫亲和吸附材料及亲和柱的制备2) Preparation of c-Myc-labeled immunoaffinity adsorption material and affinity column

采用琼脂糖微球作为载体,偶联抗c-Myc标签单域重链抗体,具体制备方法如下:Using agarose microspheres as a carrier, coupled with anti-c-Myc tag single domain heavy chain antibody, the specific preparation method is as follows:

将CNBr活化的干胶用0.1M HCl洗涤10次,每次平衡5min。用偶联缓冲液(10mM,Na2HPO4,pH 7.2)洗涤10次,加入抗c-Myc标签单域重链抗体(2mg/每克琼脂糖微球),室温反应3.5h,使抗c-Myc标签单域重链抗体与CNBr活化的琼脂糖凝胶微球共价偶联。用偶联缓冲液(10mM,Na2HPO4,pH 7.2)洗涤3次后,加入封闭液室温反应2.5h以封闭未反应的活性基团。用6倍胶体积的磷酸缓冲液(10mM,pH 7.2)和醋酸缓冲液(0.1M,pH 4.5)交替洗涤3次,得到共价偶联了抗c-Myc标签单域重链抗体的免疫亲和吸附材料。取0.2ml上述免疫亲和吸附材料于容量为1ml的层析柱,8~10倍柱床体积的PBS(10mM,pH 7.2)洗涤后,加入20%乙醇溶液,4℃保存。The CNBr-activated dry gel was washed 10 times with 0.1M HCl, equilibrated for 5 min each time. Wash 10 times with coupling buffer (10 mM, Na 2 HPO 4 , pH 7.2), add anti-c-Myc tag single domain heavy chain antibody (2 mg/gram of agarose microspheres), react at room temperature for 3.5 h, and allow anti-c-Myc - Myc-tagged single-domain heavy-chain antibody covalently coupled to CNBr-activated Sepharose microspheres. After washing 3 times with coupling buffer (10 mM, Na 2 HPO 4 , pH 7.2), a blocking solution was added to react at room temperature for 2.5 h to block unreacted active groups. Wash 3 times alternately with phosphate buffer (10 mM, pH 7.2) and acetate buffer (0.1 M, pH 4.5) with 6 gel volumes to obtain an immunophile covalently coupled to the anti-c-Myc tag single domain heavy chain antibody. and adsorbent materials. Take 0.2ml of the above immunoaffinity adsorption material on a chromatographic column with a capacity of 1ml, wash with 8 to 10 times the column bed volume of PBS (10mM, pH 7.2), add 20% ethanol solution, and store at 4°C.

3)c-Myc标签免疫亲和吸附材料及亲和柱的制备3) Preparation of c-Myc-labeled immunoaffinity adsorption material and affinity column

采用硅胶微球作为载体,偶联抗c-Myc标签单域重链抗体,具体制备方法如下:Using silica gel microspheres as a carrier, coupled with anti-c-Myc tag single domain heavy chain antibody, the specific preparation method is as follows:

取2g硅胶微球用纯水和磷酸缓冲液(PBS,10mM,pH 6.5)交替洗涤6~10次,用10mlPBS缓冲液悬浮硅胶微球,加入5mg抗c-Myc标签单域重链抗体,混匀,加入终浓度5mg/ml的碳二亚胺(EDC),迅速混匀,4℃搅拌反应12~20h,得到共价偶联了抗c-Myc标签单域重链抗体的免疫亲和吸附材料。取0.2ml上述免疫亲和吸附材料于容量为1ml的层析柱,58~10倍柱床体积的PBS(10mM,pH 6.5)洗涤后,加入含0.02%(w/v)Na3N的PBS(10mM,pH 6.5),4℃保存。Take 2 g of silica gel microspheres and wash them alternately with pure water and phosphate buffer (PBS, 10 mM, pH 6.5) for 6 to 10 times, suspend the silica gel microspheres with 10 ml of PBS buffer, add 5 mg of anti-c-Myc tag single domain heavy chain antibody, mix Add carbodiimide (EDC) at a final concentration of 5 mg/ml, mix quickly, and react with stirring at 4°C for 12-20 hours to obtain an immunoaffinity adsorption covalently coupled to an anti-c-Myc tag single domain heavy chain antibody Material. Take 0.2ml of the above-mentioned immunoaffinity adsorption material on a chromatographic column with a capacity of 1ml, wash with PBS (10mM, pH 6.5) of 58 to 10 times the column bed volume, and then add PBS containing 0.02% (w/v) Na 3 N (10mM, pH 6.5), stored at 4°C.

4)c-Myc标签亲和层析柱的吸附量、重复使用测定4) Determination of the adsorption capacity and repeated use of the c-Myc tag affinity chromatography column

用6倍柱床体积PBS(10mM,pH 7.2)清洗柱子,加入蛋白样品溶液,流出液重新过柱。然后用3倍柱床体积纯水淋洗,再用甘氨酸盐酸(pH 2.2)洗脱特异性吸附的含c-Myc标签重组蛋白,收集的洗脱液,即为纯化后的蛋白溶液。实验结果表明,装填有1mL1)、2)、3)制备的亲和柱/磁珠可以特异性吸附目的蛋白。重复使用10次之后,回收率仍然大于80%。可以通过生物学方法大量培养生产配基为单域重链抗体,避免了人工抗体等繁琐生产方法,大大降低了生产成本,并且可重复使,应用前景广阔。The column was washed with 6 times the column bed volume of PBS (10mM, pH 7.2), the protein sample solution was added, and the effluent was passed through the column again. Then rinse with 3 times the column bed volume of pure water, and then use glycine hydrochloric acid (pH 2.2) to elute the specifically adsorbed recombinant protein containing the c-Myc tag, and the collected eluate is the purified protein solution. The experimental results show that the affinity column/magnetic beads prepared with 1 mL of 1), 2), and 3) can specifically adsorb the target protein. After repeated use 10 times, the recovery rate is still greater than 80%. The single-domain heavy-chain antibody can be cultured and produced in large quantities through biological methods, avoiding cumbersome production methods such as artificial antibodies, greatly reducing production costs, and can be used repeatedly, with broad application prospects.

实施例6:Embodiment 6:

抗c-Myc标签的纳米抗体的耐热实验Heat resistance experiment of nanobodies against c-Myc tag

通过ELISA实验对纳米抗体热稳定性进行测定,实验方法如下:The nanobody thermal stability is determined by ELISA experiment, and the experimental method is as follows:

取浓度为5μg/mL Myc-GST蛋白,以每孔100μL加入96孔酶标板中,4℃包被过夜;0.05%PBST洗板3次;3%的脱脂牛奶37℃封闭l h;加入稀释后的c-Myc纳米抗体,每孔100μL,37℃,孵育1h;加入1:2000工作浓度HRP标记的抗His标签二抗,每孔加入100μL,37℃,孵育1h;加入TMB显色液,每孔加入100μL;在多组不同在温度下孵育30min;反应结束后,加入2M硫酸终止反应,每孔加入50μL,混匀终止反应后测定450nm吸光值。Take the Myc-GST protein at a concentration of 5 μg/mL, add 100 μL per well into a 96-well ELISA plate, and coat overnight at 4°C; wash the plate three times with 0.05% PBST; block with 3% skimmed milk at 37°C for 1 h; c-Myc nanobody, 100 μL per well, 37°C, incubate for 1 h; add 1:2000 working concentration of HRP-labeled anti-His tag secondary antibody, add 100 μL per well, 37°C, incubate for 1 h; add TMB chromogenic solution, each Add 100 μL to the well; incubate at different temperatures for 30 min in multiple groups; after the reaction, add 2M sulfuric acid to terminate the reaction, add 50 μL to each well, mix well to terminate the reaction, and measure the absorbance at 450 nm.

结果显示即使温度高达70℃、80℃、90℃,蛋白活性依然具有生物活性,OD450值分别为1.5、1.3、1.1,具有较好的耐热性。The results showed that even when the temperature was as high as 70°C, 80°C, and 90°C, the protein activity still had biological activity, and the OD 450 values were 1.5, 1.3, and 1.1, respectively, showing good heat resistance.

SEQUENCE LISTINGSEQUENCE LISTING

<110> 南昌大学<110> Nanchang University

<120> 抗c-Myc标签的纳米抗体<120> Nanobodies against c-Myc tag

<130> 2017<130> 2017

<160> 9<160> 9

<170> PatentIn version 3.3<170> PatentIn version 3.3

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<213> 人工序列<213> Artificial sequence

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1 5 10 151 5 10 15

Ser Leu Thr Leu Thr Cys Val Ala Ser Gly Gly Thr Leu Glu Asn TrpSer Leu Thr Leu Thr Cys Val Ala Ser Gly Gly Thr Leu Glu Asn Trp

20 25 30 20 25 30

Asp Ile Ala Trp Phe Arg Gln Ala Pro Gly Lys Glu Arg Glu Gly ValAsp Ile Ala Trp Phe Arg Gln Ala Pro Gly Lys Glu Arg Glu Gly Val

35 40 45 35 40 45

Ala Tyr Phe Ser Ser Asp Gly Ile Arg Asn Tyr Gly Asp Ser Met ArgAla Tyr Phe Ser Ser Asp Gly Ile Arg Asn Tyr Gly Asp Ser Met Arg

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Gly Arg Phe Lys Ile Ser Arg Asp Asn Ala Lys Asn Thr Ala Trp LeuGly Arg Phe Lys Ile Ser Arg Asp Asn Ala Lys Asn Thr Ala Trp Leu

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acctgtgtag cctcaggcgg cactttggag aattgggata tagcctggtt ccgtcaggcc 120acctgtgtag cctcaggcgg cactttggag aattgggata tagcctggtt ccgtcaggcc 120

ccagggaagg agcgtgaggg ggtcgcatat tttagtagtg atggtattag aaattatgga 180ccagggaagg agcgtgaggg ggtcgcatat tttagtagtg atggtattag aaattatgga 180

gactccatga ggggccgatt caaaatctct agagacaacg ccaagaacac agcgtggctg 240gactccatga ggggccgatt caaaatctct agagacaacg ccaagaacac agcgtggctg 240

cagatgaatc gcctgagcgt tgaagacacg tccacatatt attgtgcggc caaagaaagg 300cagatgaatc gcctgagcgt tgaagacacg tccacatatt attgtgcggc caaagaaagg 300

gtcggacgtg catggcgaaa tgatggactt taccgctact ggggccaggg gacccaggtc 360gtcggacgtg catggcgaaa tgatggactt taccgctact ggggccagggg gacccaggtc 360

accgtctcct ca 372accgtctcct ca 372

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<220><220>

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<210> 5<210> 5

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cgagtgcggc cgcggggtct tcgctgtggt gcg 33cgagtgcggc cgcggggtct tcgctgtggt gcg 33

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<212> DNA<212>DNA

<213> 人工序列<213> Artificial sequence

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<212> DNA<212>DNA

<213> 人工序列<213> Artificial sequence

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gccccattca gatcctcttc 20gccccattca gatcctcttc 20

Claims (9)

1.一种针对c-Myc标签的纳米抗体,具有SEQ ID NO.:1所示的氨基酸序列。1. A nanobody directed at the c-Myc tag, having the amino acid sequence shown in SEQ ID NO.:1. 2.一种核酸分子,其特征是编码权利要求1中所述氨基酸序列。2. A nucleic acid molecule, characterized in that it encodes the amino acid sequence described in claim 1. 3.根据权利要求2所述的核酸分子,其特征在于序列如SEQ ID NO.:2。3. The nucleic acid molecule according to claim 2, characterized in that the sequence is as SEQ ID NO.:2. 4.一种包含权利要求2所述的核酸序列的载体。4. A vector comprising the nucleic acid sequence of claim 2. 5.一种包含权利要求4所述的载体的宿主细胞。5. A host cell comprising the vector of claim 4. 6.权利要求1所述的针对c-Myc标签的纳米抗体在免疫检测、富集纯化c-Myc标签中的应用。6. The application of the Nanobody against c-Myc tag described in claim 1 in immunodetection, enrichment and purification of c-Myc tag. 7.权利要求1所述的针对c-Myc标签的纳米抗体在制备c-Myc标签免疫检测、富集以及纯化试剂或材料中的应用。7. The application of the nanobody against c-Myc tag described in claim 1 in the preparation of c-Myc tag immunodetection, enrichment and purification reagents or materials. 8.权利要求1所述的针对c-Myc标签的纳米抗体通过随机或定点突变技术进行改造所获得的能与c-Myc标签特异性结合的抗体。8. The nanobody against c-Myc tag according to claim 1 is modified by random or site-directed mutagenesis technology and can specifically bind to c-Myc tag. 9.一种针对c-Myc标签的免疫亲和吸附材料,包括载体,搭载在载体上的配基,其特征在于该材料以针对c-Myc标签的纳米抗体作为配基,所述针对c-Myc标签的纳米抗体具有SEQ ID NO.:1所示的氨基酸序列。9. An immunoaffinity adsorption material directed at c-Myc label, comprising a carrier, a ligand carried on the carrier, characterized in that the material uses a nanobody directed at the c-Myc label as the ligand, and the c-Myc label is directed against The Myc-tagged nanobody has the amino acid sequence shown in SEQ ID NO.:1.
CN201710100436.1A 2017-02-23 2017-02-23 Nano antibody of anti-c-Myc label Expired - Fee Related CN106831991B (en)

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Cited By (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN113061611A (en) * 2021-03-08 2021-07-02 广东省第二人民医院(广东省卫生应急医院) Encoding gene of drosophila MYC (MYC) nano antibody, preparation method and application

Cited By (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN113061611A (en) * 2021-03-08 2021-07-02 广东省第二人民医院(广东省卫生应急医院) Encoding gene of drosophila MYC (MYC) nano antibody, preparation method and application
CN113061611B (en) * 2021-03-08 2022-02-01 广东省第二人民医院(广东省卫生应急医院) Encoding gene of drosophila MYC (MYC) nano antibody, preparation method and application

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