CN106800573B - Nucleotide phosphonate monohydrate, preparation method and medical application thereof - Google Patents
Nucleotide phosphonate monohydrate, preparation method and medical application thereof Download PDFInfo
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- CN106800573B CN106800573B CN201610973798.7A CN201610973798A CN106800573B CN 106800573 B CN106800573 B CN 106800573B CN 201610973798 A CN201610973798 A CN 201610973798A CN 106800573 B CN106800573 B CN 106800573B
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- monohydrate
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Images
Classifications
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07F—ACYCLIC, CARBOCYCLIC OR HETEROCYCLIC COMPOUNDS CONTAINING ELEMENTS OTHER THAN CARBON, HYDROGEN, HALOGEN, OXYGEN, NITROGEN, SULFUR, SELENIUM OR TELLURIUM
- C07F9/00—Compounds containing elements of Groups 5 or 15 of the Periodic Table
- C07F9/02—Phosphorus compounds
- C07F9/547—Heterocyclic compounds, e.g. containing phosphorus as a ring hetero atom
- C07F9/6561—Heterocyclic compounds, e.g. containing phosphorus as a ring hetero atom containing systems of two or more relevant hetero rings condensed among themselves or condensed with a common carbocyclic ring or ring system, with or without other non-condensed hetero rings
- C07F9/65616—Heterocyclic compounds, e.g. containing phosphorus as a ring hetero atom containing systems of two or more relevant hetero rings condensed among themselves or condensed with a common carbocyclic ring or ring system, with or without other non-condensed hetero rings containing the ring system having three or more than three double bonds between ring members or between ring members and non-ring members, e.g. purine or analogs
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- Chemical & Material Sciences (AREA)
- Organic Chemistry (AREA)
- Health & Medical Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Biochemistry (AREA)
- General Health & Medical Sciences (AREA)
- Molecular Biology (AREA)
- Pharmaceuticals Containing Other Organic And Inorganic Compounds (AREA)
Abstract
Description
Technical Field
The invention relates to a nucleotide phosphonate monohydrate, a preparation method and a medical application thereof, in particular to a monohydrate of a compound (I), a preparation method and a composition thereof and an application thereof in preparing a medicament for treating virus infectious diseases.
Background
Hepatitis B is one of the worldwide diseases, and is caused by hepatitis B virus. One third of the world's population is infected to some extent with hepatitis B virus, including 3 billion to 5 million chronic carriers. In some asian and african countries, hepatitis b has become an epidemic disease, especially in china. Hepatitis b virus causes acute and chronic infections, with acute infections usually accompanied by liver inflammation, vomiting, jaundice, and very individually death, while chronic infections may induce cirrhosis and liver cancer. Although hepatitis B virus infection can be prevented by vaccines at present, there is no effective method for treating chronic hepatitis B disease.
Tenofovir (tenofovir), chemical name [ (1R) -2- (6-aminopurine-9-yl) -1-methyl-ethoxy ] methylphosphonic acid (PMPA), is a nucleotide reverse transcriptase inhibitor, and has anti-HBV and anti-HIV activity; but because it contains phosphate group, it has large polarity, poor biological membrane penetration ability, poor bioavailability in vivo and other disadvantages. To overcome this disadvantage, phosphonate or phosphonamide prodrug forms can be prepared. In 2002, Viread (tenofovir disoproxil fumarate) which is a marketed drug is developed by Gilidde corporation and is used as a prodrug mode of PMPA, and the phosphonate prepared by the Viread mode greatly improves the bioavailability. Viread plays an important role in the treatment of HIV and HBV. Meanwhile, another PMPA prodrug of this company, tenofoviralafenamide (taf), has been FDA approved for use in treating HIV infection in combination with emtricitabine/cobicistat/elvitegravir (trade name Genvoya). Tenofovir alafenamide, taken alone, is currently in clinical phase 3 for the treatment of HBV infection.
The invention provides a novel PMPA prodrug hydrate, which can be used for treating viral infectious diseases, wherein the viral infectious diseases comprise infectious diseases caused by HBV and HIV viruses.
Disclosure of Invention
The present invention provides a monohydrate of compound (I):
in a preferred embodiment of the present invention, the monohydrate of compound (I) is a monoclinic compound determined by single crystal diffraction structure analysis, and has a space group of P21Cell parameter of α γ 90 ° and β 95.086(5 °), the ratio of crystal axes a/b 0.8391, b/c 0.4076 and c/a 2.9237, Z2,
the invention provides a method for preparing a monohydrate of a compound (I), which is to dissolve the compound (I) in a mixed solvent of acetonitrile and water, and volatilize the solvent at a proper temperature to prepare the monohydrate of the compound (I).
In a preferred embodiment of the present invention, the method for preparing the monohydrate of the compound (I) is to dissolve the compound (I) in a mixed solvent of acetonitrile and water, and volatilize the solvent at a suitable temperature, wherein the suitable temperature is preferably 10 to 30 ℃.
In a preferred embodiment of the present invention, the monohydrate of the compound (I) is prepared by dissolving the compound (I) in a mixed solvent of acetonitrile and water, and volatilizing the solvent at a suitable temperature, wherein the volume ratio of acetonitrile to water is 10:1 to 2:1, preferably 10:1 to 1:1, more preferably 5:1 to 1:1, further preferably 4:1, and the suitable temperature is preferably 10 to 30 ℃.
The present invention provides a pharmaceutical composition comprising a therapeutically effective amount of a monohydrate of compound (I) as defined in any one of the above, together with a pharmaceutically acceptable carrier or excipient.
The invention provides an application of the monohydrate of the compound (I) or the composition thereof in preparing a medicament for treating viral infectious diseases, wherein the viral infectious diseases are preferably infectious diseases caused by HBV and HIV.
Unless stated to the contrary, the terms used in the specification and claims have the following meanings.
The elemental carbon, hydrogen, oxygen, sulfur, nitrogen or halogen referred to in the groups and compounds of the invention all include their isotopes, and the elemental carbon, hydrogen, oxygen, sulfur or nitrogen referred to in the groups and compounds of the invention are optionally further replaced by one or more of their corresponding isotopes, wherein isotopes of carbon include12C、13C and14c, isotopes of hydrogen including protium (H), deuterium (D, also called deuterium), tritium (T, also called deuterium), isotopes of oxygen including16O、17O and18isotopes of O, sulfur including32S、33S、34S and36isotopes of S, nitrogen include14N and15isotopes of N, F19Isotopes of F, chlorine including35Cl and37cl, isotopes of bromine including79Br and81Br。
"pharmaceutical composition" means a mixture of one or more compounds described herein or a physiologically/pharmaceutically acceptable salt thereof with other ingredients, wherein the other ingredients comprise physiologically/pharmaceutically acceptable carriers and excipients.
"carrier" refers to a carrier or diluent that does not cause significant irritation to an organism and does not abrogate the biological activity and properties of the administered compound.
"excipient" refers to an inert substance added to a pharmaceutical composition to further depend on the administration of the compound. Examples of excipients include, but are not limited to, calcium carbonate, calcium phosphate, various sugars and different types of starch, cellulose derivatives (including microcrystalline cellulose), gelatin, vegetable oils, polyethylene glycols, diluents, granulating agents, lubricants, binders, disintegrating agents, and the like.
Drawings
FIG. 1 is a single crystal diffraction pattern of monohydrate of Compound (I).
Detailed Description
The following detailed description is provided for the purpose of illustrating the embodiments and the advantageous effects thereof, and is not intended to limit the scope of the present disclosure.
The structure of the compounds is determined by Nuclear Magnetic Resonance (NMR) or (and) Mass Spectrometry (MS). NMR shift (. delta.) of 10-6The units in (ppm) are given. NMR was measured using (Bruker Avance III 400 and Bruker Avance 300) nuclear magnetic instrument in deuterated dimethyl sulfoxide (DMSO-d)6) Deuterated chloroform (CDCl)3) Deuterated methanol (CD)3OD), internal standard Tetramethylsilane (TMS).
MS was measured by Agilent 6120B (ESI) and Agilent 6120B (APCI).
HPLC was carried out using an Agilent 1260DAD high pressure liquid chromatograph (Zorbax SB-C18100X 4.6 mm).
The thin layer chromatography silica gel plate adopts HSGF254 of tobacco yellow sea or GF254 of Qingdao, the specification of the silica gel plate used by Thin Layer Chromatography (TLC) is 0.15 mm-0.20 mm, and the specification of the thin layer chromatography separation and purification product is 0.4 mm-0.5 mm.
The column chromatography generally uses 200-300 mesh silica gel of the Tibet Huanghai silica gel as a carrier.
Known starting materials of the present invention can be synthesized by or according to methods known in the art, or can be purchased from companies such as Tatan technology, Annaiji chemistry, Shanghai Demer, Chengdong chemical, Shaoshan far chemical technology, and Bailingwei technology.
The nitrogen atmosphere means that the reaction flask is connected with a nitrogen balloon with a volume of about 1L.
The hydrogen atmosphere refers to a reaction flask connected with a hydrogen balloon with a volume of about 1L.
The hydrogenation reaction was usually evacuated and charged with hydrogen and repeated 3 times.
In the examples, the reaction was carried out under a nitrogen atmosphere without specific mention.
In the examples, the solution means an aqueous solution unless otherwise specified.
In the examples, the reaction temperature is room temperature, unless otherwise specified.
The room temperature is the most suitable reaction temperature and is 20-30 ℃.
Example 1
Thiopropyl (2S) -2- [ [ [ (1R) -2- (6-aminopurine-9-yl) -1-methylethoxy ] methyl-phenoxy-phosphoryl ] amino ] propanoate monohydrate (Compound 1, optically pure Rp-1)
S-isopropyl
(2S)-2-[[[(1R)-2-(6-aminopurin-9-yl)-1-methyl-ethoxy]methyl-phenoxy-phosphoryl]amino]propanethioatehydrate
The first step is as follows: (S) -Thioisopropyl 2- (tert-Butoxycarbonyl) aminopropionate (1B)
(S)-S-isopropyl 2-((tert-butoxycarbonyl)amino)propanethioate
N-tert-butoxycarbonyl-L-alanine (1A) (5g,26.4mmol) was dissolved in tetrahydrofuran (40mL), and N, N' -Carbonyldiimidazole (CDI) (4.7g, 29.1mmol) was added and stirred at room temperature for 2 hours. Thioisopropanol (6.2g,79.3mmol) was added and the reaction was allowed to proceed overnight at room temperature. 4mol/L sodium hydroxide solution (30mL) was added, extraction was performed with dichloromethane (50 mL. times.4), the organic layers were combined, dried over anhydrous sodium sulfate, concentrated, and the residue was separated and purified with a silica gel column (petroleum ether: ethyl acetate (v/v) ═ 1:0 to 9:1) to give the title compound (S) -thioisopropyl 2- (tert-butoxycarbonyl) aminopropionate (1B) as a pale yellow liquid (4g, 61% yield).
1H NMR(400MHz,CDCl3)δ3.61(m,1H),2.37–2.16(m,1H),1.46(s,9H),1.36(d,3H),1.30(d,6H)。
The second step is that: (S) -2-Aminopropionic acid Thioisopropyl trifluoroacetate (1C)
(S)-S-isopropyl 2-aminopropanethioate triflouroacetate
Thiopropyl (S) -2- (tert-butoxycarbonyl) aminopropionate (1B) (4g,16.2mmol) was dissolved in methylene chloride (10mL), and trifluoroacetic acid (10mL) was added and the mixture was stirred at room temperature for 4 hours. Concentration under reduced pressure to dryness gave crude (S) -2-aminopropionic acid thioisopropyl ester trifluoroacetate (1C) (4g) which was used directly in the next step.
The third step: [ [ (1R) -2- (6-aminopurin-9-yl) -1-methylethoxy ] methyl ] phenoxyphosphinic acid (1E)
[(1R)-2-(6-aminopurin-9-yl)-1-methyl-ethoxy]methyl-phenoxy-phosphinicacid
[ [ (1R) -2- (6-aminopurine-9-yl) -1-methylethoxy ] methyl ] phosphoric acid (i.e., PMPA) (1D) (5g,17.4mmol) was added to a three-necked flask under nitrogen, and after addition of acetonitrile (40mL), triethylamine (3.5g,34.8mmol), 4-dimethylaminopyridine (i.e., DMAP) (2.1g, 17.4mmol) and triphenyl phosphite (8.1g, 26.1mmol), the flask was heated to an internal temperature of 80 ℃ for two days. The reaction mixture was concentrated under reduced pressure to remove acetonitrile, ethyl acetate (10mL) and water (15mL) were added to the residue, the layers were separated, the aqueous layer was extracted with ethyl acetate (10 mL. times.2), the aqueous layers were combined, the pH of the aqueous layer was adjusted to 3 with concentrated hydrochloric acid, stirred at room temperature for 10 minutes, adjusted to 2 with concentrated hydrochloric acid, cooled to 10 ℃ with ice water, stirred for two hours, allowed to stand overnight, filtered, the filter cake was washed with water (10mL), the filter cake was collected, and the title compound [ [ (1R) -2- (6-aminopurine-9-yl) -1-methylethoxy ] methyl ] phenoxy hypophosphorous acid (1E), (3.5g, 56% yield) was oven dried.
1H NMR(400MHz,DMSO)δ8.16(s,1H),8.14(s,1H),7.55(s,2H),7.32–7.25(m,2H),7.09(m,3H),4.30(dd,1H),4.19(dd,1H),3.97(m,1H),3.87–3.69(m,2H),1.05(d,3H)。
31P NMR(400MHz,DMSO)δ16.66。
The fourth step: [ [ (1R) -2- (6-aminopurin-9-yl) -1-methylethoxy ] methyl ] phenoxyphosphoryl chloride (1F)
9-[(2R)-2-[[chloro(phenoxy)phosphoryl]methoxy]propyl]purin-6-amine
[ [ (1R) -2- (6-aminopurine-9-yl) -1-methylethoxy ] methyl ] phenoxy-phosphinic acid (1E) (2g, 5.5mmol) was suspended in acetonitrile (20mL), thionyl chloride (2.6g, 22.0mmol) was added, the reaction was heated to an internal temperature of 85 ℃ for 4 hours, and the reaction was concentrated under reduced pressure to give a crude product which was used directly in the next step.
The fifth step: thiopropyl (1G) (optically pure Rp-1) of (2S) -2- [ [ (1R) -2- (6-aminopurine-9-yl) -1-methylethoxy ] methyl ] phenoxyphosphorylaminopropionate
S-isopropyl(2S)-2-[[[(1R)-2-(6-aminopurin-9-yl)-1-methyl-ethoxy]methyl-phenoxy-phosphoryl]amino]propanethioate
(S) -2-Aminopropionic acid thioisopropyl ester trifluoroacetate (1C) (4g,16.2mmol) was dissolved in dry dichloromethane (20mL), cooled to-50 ℃ under nitrogen, triethylamine (5mL, 35.8mmol) was added dropwise, the mixture was stirred for 10 minutes, a suspension of [ [ (1R) -2- (6-aminopurine-9-yl) -1-methylethoxy ] methyl ] phenoxyphosphoryl chloride (1F) (2.1g, 5.5mmol) in dichloromethane (20mL) was added dropwise, and after completion, the temperature was naturally raised to room temperature for 1 hour. Adding water (20mL) to the reaction solution, separating, washing the organic layer once with water (10mL), drying over anhydrous sodium sulfate, concentrating under reduced pressure, dissolving the residue in ethyl acetate (50mL), adjusting the pH to 2 with 4mol/L hydrochloric acid under ice-bath cooling, separating, extracting the aqueous layer with ethyl acetate (20mL), collecting the aqueous layer, adding dichloromethane (50mL), adding saturated aqueous sodium bicarbonate solution under ice-bath cooling to adjust the pH to 8, separating, extracting the aqueous layer with dichloromethane (20mL), combining the organic layers, washing with saturated sodium chloride (10mL), drying over anhydrous sodium sulfate, concentrating under reduced pressure to obtain a mixture of two diastereomers of (2S) -2- [ [ (1R) -2- (6-aminopurine-9-yl) -1-methylethoxy ] methyl ] phenoxy ] phosphoryl amino propionic acid thioisopropyl ester (1G) (300mg, yield 11%), the mixture was resolved by HPLC to give 1G (optically pure Rp-1)), compound 1G being peak 1 after HPLC resolution.
The separation and analysis method comprises the following steps: instrument, Thar analytical SFC; column, ChiralPak AS-H, 250X 4.6 mm; mobile phase, A is CO2And B is Methanol (0.05% DEA); gradient, B40%; flow rate, 2.4 mL/min; back pressure, 100 bar; column temperature, 35 ℃; wavelength, 220 nm.
The preparation and separation method comprises the following steps: instrument, MG ii preparatory SFC; column, ChiralPak AS-H,250 × 30 mmi.d.; mobile phase, A is CO2And B is Methanol; gradient, B40%; flow rate, 40 mL/min; back pressure, 100 bar; the column temperature is 38 ℃; wavelength, 220 nm; cycle, 5.5 min.
Sample preparation 1G of a mixture of two diastereomers (300mg) was dissolved in methanol to prepare a solution having a sample concentration of 10mg/mL, and 3 mL/needle was injected, and two optical isomer compounds were obtained after separation, wherein peak 1 was compound 1G (retention time: 2.21min, 106mg, white solid, ee%: 100%) and peak 2 was diastereoisomer 1G' of compound 1G (retention time: 3.82min, 109mg, white solid, ee%: 100%).
Compound 1G
1H NMR(400MHz,CDCl3)δ8.31(s,1H),8.01(s,1H),7.32(t,2H),7.21–7.11(m,3H),6.04(s,2H),4.47(dd,1H),4.21–4.13(m,1H),4.13–4.06(m,1H),4.06–3.96(m,2H),3.69(dd,1H),3.54–3.39(m,2H),1.28–1.17(m,12H)。
31P NMR(162MHz,CDCl3)δ23.15。
LC-MS M/Z(ESI):493.1[M+1]。
Diastereomer 1G 'of Compound 1G'
1H NMR(400MHz,CDCl3)δ8.35(s,1H),7.97(s,1H),7.25–7.17(m,2H),7.13–7.05(m,1H),7.03–6.95(m,2H),5.90(s,2H),4.34(dd,1H),4.16–4.03(m,2H),3.99–3.89(m,2H),3.84(t,1H),3.76–3.52(m,2H),1.33–1.20(m,12H)。
31P NMR(162MHz,CDCl3)δ22.12。
LC-MS M/Z(ESI):493.1[M+1]。
And a sixth step: thiopropyl (2S) -2- [ [ [ (1R) -2- (6-aminopurine-9-yl) -1-methylethoxy ] methyl-phenoxy-phosphoryl ] amino ] propanoate monohydrate (Compound 1, optically pure Rp-1)
S-isopropyl(2S)-2-[[[(1R)-2-(6-aminopurin-9-yl)-1-methyl-ethoxy]methyl-phenoxy-phosphoryl]amino]propanethioate hydrate
About 5mg of thioisopropyl (2S) -2- [ [ (1R) -2- (6-aminopurine-9-yl) -1-methylethoxy ] methyl ] phenoxy phosphoryl ] aminopropionate (1G) (optically pure Rp-1)) was placed in a glass vial, sonicated with acetonitrile (1.6mL) and water (0.4mL) and evaporated in a small well at room temperature to give a bulk crystal, i.e., (2S) -2- [ [ [ (1R) -2- (6-aminopurine-9-yl) -1-methylethoxy ] methyl-phenoxy-phosphoryl ] amino ] propionate monohydrate (compound 1, optically pure Rp-1).
Example 2: single crystal X-ray crystallography measurements of Compound 1 (optically pure Rp-1) (shown in FIG. 1)
1. Instrument information and detection method parameters
2 data of single crystal structure
3. Compound 1 (optically pure Rp-1) atomic coordinate (x 10)4) Equivalent isotropic displacement parameterAnd U (eq)
U (eq) is defined as one third (U (eq) of the orthogonal Uij tensor track of the orthogonal as one third of the orthogonal as of the orthogonal Uijtensor)
4. Compound 1 (optically pure Rp-1) Hydrogen atom coordinate (x 10)4) Equivalent isotropic displacement parameterAnd U (eq)
The anisotropy displacement factor index takes the form-2 π2[h2a*2U11+...+2h k a*b*U12]。
Biological test example
Screening for anti-hepatitis B Virus Activity
The anti-hepatitis B virus activity of the compounds was determined using HepG2.2.15 cells. The materials and instruments used were as follows: HepG2.2.15 cells, RPMI 1640 medium, fetal bovine serum, 96-well plates, DMSO, QIAamp 96DNAblood Kit, Cell-titer blue, microplate reader, Applied Biosystems 7900real-time PCR system.
Compound 1 (optically pure Rp-1) was dissolved in DMSO to 20mM, stored at-20 ℃ and a 20mM stock solution of compound 1 (optically pure Rp-1) was diluted in DMSO in a 3-fold gradient for a total of 9 concentrations. Then diluted 200-fold with 2.0% FBS-containing RPMI 1640 medium. The highest final concentration tested for the compound was 100M. Experimental procedures referring to the QIAamp 96DNA Blood Kit (QIAGEN51161) instructions, the qpCR method was used to determine the anti-hepatitis B virus activity of the compounds and to calculate the EC50(half the effective inhibitory concentration). Data analysis and calculation of percent inhibition: percent inhibition was calculated using the following formula: inhibition (%) - (total amount of HBV in DMSO control group-total amount of HBV in test sample group)/total amount of HBV in DMSO control group × 100. Finally, EC of the compound was calculated using GraphPad Prism software50The value is obtained.
Cell-titer blue method for determining cytotoxicity of compounds and calculating CC50(resulting in a 50% cytotoxic concentration). Analysis of data and calculation of relative cell viability: the percentage of cell activity was calculated using the following formula: cell viability (%) × (fluorescence value of test sample-background fluorescence value)/(fluorescence value of DMSO control group-background fluorescence value) × 100. Finally CC of the compound was calculated using GraphPad Prism software50The value is obtained. The results are shown in the following table:
compound numbering | EC50(nM) | CC50(μM) |
Compound 1 (optical purity Rp-1) | 8 | >100 |
Claims (8)
2. compound (I) monohydrate according to claim 1, characterized in that it belongs to the monoclinic system, determined by single crystal diffraction structure analysis, as space group P21Cell parameter of α γ 90 ° and β 95.086(5 °), the ratio of crystal axes a/b 0.8391, b/c 0.4076 and c/a 2.9237, Z2,
3. the method for preparing the monohydrate of the compound (I) according to claim 1, which is characterized in that the monohydrate of the compound (I) is prepared by dissolving the compound (I) in a mixed solvent of acetonitrile and water and volatilizing the solvent at 10-30 ℃.
4. A process according to claim 3, characterized in that the volume ratio of acetonitrile to water is from 10:1 to 2: 1.
5. The process according to claim 4, characterized in that the volume ratio of acetonitrile to water is 4: 1.
6. A pharmaceutical composition comprising a therapeutically effective amount of a monohydrate of compound (I) according to any one of claims 1 to 2, together with a pharmaceutically acceptable carrier or excipient.
7. Use of the monohydrate of claim 1 or 2 or the pharmaceutical composition of 6 for the preparation of a medicament for the treatment of a viral infectious disease.
8. The use according to claim 7, wherein the viral infectious diseases include infectious diseases caused by HBV and HIV.
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