CN106755332A - A kind of Shigella detection method of content - Google Patents

A kind of Shigella detection method of content Download PDF

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Publication number
CN106755332A
CN106755332A CN201611069304.9A CN201611069304A CN106755332A CN 106755332 A CN106755332 A CN 106755332A CN 201611069304 A CN201611069304 A CN 201611069304A CN 106755332 A CN106755332 A CN 106755332A
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China
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dna
shigella
dilution
added
detection method
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CN201611069304.9A
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Inventor
周合
张根义
张进
周朱晨
杨敏
胡彬
吴念绮
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100 Olson Jiangsu Food Safety Technology Co Ltd
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100 Olson Jiangsu Food Safety Technology Co Ltd
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Priority to CN201611069304.9A priority Critical patent/CN106755332A/en
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    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6844Nucleic acid amplification reactions
    • C12Q1/6851Quantitative amplification

Abstract

The invention discloses a kind of Shigella detection method of content, comprise the following steps:(1)The measuring samples containing Shigella are taken, genomic DNA is extracted:3g measuring samples to 5 10min of concussion that in the centrifuge tube of the 50mL for filling 27mLGN enrichment liquids, are vortexed are weighed, is well mixed to obtain mixture;Take 0.5mLGN enrichment liquids dilution mix mixture be added to through sterilizing 4.5mLGN enrichment liquids in obtain each dilution gradient, if 57 dilution factors;Using three pipes or five pipe parallel methods, each dilution factor sets 35 repeating samples, and 18 24h are cultivated in 37 DEG C, until mixed liquor only stops culture, referred to as bacterium solution in slight haze in test tube.The shortcomings of the inventive method can overcome the detection cycle that traditional microculture detection method is present long, complex steps, waste time and energy, detection time is set to greatly shorten by 23 days, operating procedure and labour intensity also greatly reduce, and reach time saving and energy saving, rapid sensitive requirement.

Description

A kind of Shigella detection method of content
Technical field
The present invention relates to a kind of detection method, specifically a kind of Shigella detection method of content.
Background technology
Shigella(Shigella)Bacterium is generally called shigella dysenteriae, is triggering each opportunistic pathogen institute of China's infectious diarrhea disease Ranked first in accounting example, be that a class has hyperinfection and the serious Gram-negative enteric pathogenic bacteria of harm.The annual whole world Therefore bacterium infection is ill 1.6 hundred million people, there are about 1,100,000 people death, and the overwhelming majority is less than 5 years old children.Due in sanitary sewage Containing many pathogenic microorganisms, such as bacterium from enteron aisle, virus, protozoan, parasite etc., these microorganisms portion big absolutely Divide all will enter excess sludge with sewage disposal, during the Agricultural land use of sludge, by polluted surface water, underground Water, form the number of ways such as aerosol and be diffused into environment.These are with sludge into the pathogenic microorganism in environment to human body Health and Environmental security cause huge potential threat, therefore, the Shigella in sludge is quickly and accurately detected, to preventing Shigella Spreading and diffusion tool is of great significance.The detection of Shigella generally uses microbiological test of food hygiene National standard(GB4789.5–2003), i.e., using the identification of differential medium combination Physiology and biochemistry.But this method is applied to sludge It is another on the one hand because sludge composition is complicated, produce interference to the sensitivity for detecting containing a large amount of microorganisms during sample detection There is the shortcomings of detection cycle is long, loss is high, program is complicated, required reagent is various in aspect.
The content of the invention
It is an object of the invention to provide a kind of Shigella detection method of content, to solve to be proposed in above-mentioned background technology Problem.
To achieve the above object, the present invention provides following technical scheme:
A kind of Shigella detection method of content, comprises the following steps:(1)The measuring samples containing Shigella are taken, gene is extracted Group DNA:3g measuring samples to the concussion 5-10min that in the centrifuge tube of the 50mL for filling 27mLGN enrichment liquids, is vortexed are weighed, mixing is equal It is even to obtain mixture;Take 0.5mLGN enrichment liquids dilution mix mixture be added to through sterilizing 4.5mLGN enrichment liquids in obtain Each dilution gradient, if 5-7 dilution factor;Using three pipes or five pipe parallel methods, each dilution factor sets 3-5 repeating sample, in 37 DEG C of culture 18-24h, until mixed liquor only stops culture, referred to as bacterium solution in slight haze in test tube;(2)Selective enrichment Culture:Removing step(1)Bacterium solution 0.5mL is added in Shigella increasing bacterial context soup in each pipe of gained, 37 DEG C of culture 18-24h; (3)DNA is extracted:Removing step(2)Bacterium solution 2mL is added in 10mL centrifuge tubes in each pipe of gained, 10000g centrifugation 3min, is discarded Supernatant;1mL sterile PBS buffers are added, uniform, 10000g centrifugation 3min, abandoning supernatant is gently blown and beaten;Add 10 μ L Ultra-pure water, liquid nitrogen frozen and boiling water bath multigelation 3 times, then 10000g centrifugations 3min take supernatant, complete DNA and extract;Carry 4 DEG C of preservations in the DNA short time after taking, for a long time -20 DEG C of preservations;(4)Set up the real-time fluorescence list primer isothermal of Shigella Expand 25 μ L reaction systems:RNA/DNA combination primers 5.6 μm of ol/L, Blocker0.36 μm of ol/L, 10 × BstBuffer2.5 μ L、BstDNApolymerase20U、10×RNaseHBuffer2.5μL、RNaseH5U、dNTPs0.2mmol/L、 MgCl23.5mmol/L, RNaseInhibitor16U, the μ L of DNA profiling 1, the μ L of SYBERGreen II 0.3, remaining uses sterilizing DEPC Water supplies system;The SYBERGreen II is 300 times of dilutions;By DNA profiling, combination primer, Blocker and reaction buffer Mixed liquor through 99 DEG C, be cooled to 60 DEG C after 90s treatment, be rapidly added RNaseH and BstDNA polymerases, it is fixed in real-time fluorescence 58 DEG C of reaction 40min, real-time monitoring fluorescence signal in course of reaction in amount PCR instrument;(5)Detection and analysis:Analysis detecting data.
As further scheme of the invention:The primer selects GCUUAGUGA-TTTGATGGTGTC, 5 ' end 9nt synthesis It is RNA sequence, 3 ' end 12nt synthesize DNA sequence dna;Blocker selects TTAGATAATGTGGTA, 3 ' end biotin modifications, It is middle random plus five XNA modifications.
As further scheme of the invention:The IXNA includes the one kind in A, C, G, T, U or mC Liu Zhong yu bases.
As further scheme of the invention:Step(1)The extraction DNA methods use common pyrolysis method, albumen Enzyme K methods, saturated phenol method or WATER-WASHING METHOD combination commercial kit method.
Compared with prior art, the beneficial effects of the invention are as follows:The inventive method can overcome traditional microculture to examine Survey method exist detection cycle is long, complex steps, the shortcomings of waste time and energy, detection time is greatly shortened 2-3 days, operation Step and labour intensity also greatly reduce, and reach time saving and energy saving, rapid sensitive requirement.
Specific embodiment
The technical scheme in the embodiment of the present invention is clearly and completely described below.
In the embodiment of the present invention, a kind of Shigella detection method of content comprises the following steps:(1)Take containing Shigella Measuring samples, extract genomic DNA:3g measuring samples are weighed in the centrifuge tube of the 50mL for filling 27mLGN enrichment liquids, whirlpool Rotation concussion 5-10min, is well mixed to obtain mixture;The mixture for taking the dilution mixing of 0.5mLGN enrichment liquids is added to by sterilizing 4.5mLGN enrichment liquids in obtain each dilution gradient, if 5-7 dilution factor;Using three pipes or five pipe parallel methods, each is dilute Degree of releasing sets 3-5 repeating sample, and 18-24h is cultivated in 37 DEG C, until mixed liquor only stops culture in slight haze in test tube, referred to as It is bacterium solution;(2)Selective enrichment culture:Removing step(1)Bacterium solution 0.5mL is added to Shigella increasing bacterial context soup in each pipe of gained In, 37 DEG C of culture 18-24h;(3)DNA is extracted:Removing step(2)Bacterium solution 2mL is added in 10mL centrifuge tubes in each pipe of gained, 10000g is centrifuged 3min, abandoning supernatant;1mL sterile PBS buffers are added, uniform, 10000g centrifugation 3min are gently blown and beaten, Abandoning supernatant;Add 10 μ L ultra-pure waters, liquid nitrogen frozen and boiling water bath multigelation 3 times, then 10000g centrifugations 3min take Clear liquid, completes DNA and extracts;4 DEG C of preservations in the DNA short time after extraction, for a long time -20 DEG C of preservations;(4)Set up Shigella The μ L reaction systems of real-time fluorescence list primer isothermal duplication 25:5.6 μm of ol/L, Blocker0.36 μm of ol/ of RNA/DNA combination primers L、10×BstBuffer2.5μL、BstDNApolymerase20U、10×RNaseHBuffer2.5μL、RNaseH5U、 DNTPs0.2mmol/L, MgCl23.5mmol/L, RNaseInhibitor16U, the μ L of DNA profiling 1, the μ L of SYBERGreen II 0.3, Remaining supplies system with sterilizing DEPC water;The SYBERGreen II is 300 times of dilutions;By DNA profiling, combination primer, The mixed liquor of Blocker and reaction buffer is cooled to 60 DEG C through 99 DEG C after 90s treatment, is rapidly added RNaseH and BstDNA Polymerase, 58 DEG C of reaction 40min, real-time monitoring fluorescence signal in course of reaction on real-time fluorescence quantitative PCR instrument;(5)Detection Analysis:Analysis detecting data.The primer selects GCUUAGUGA-TTTGATGGTGTC, 5 ' end 9nt to synthesize RNA sequence, 3 ' End 12nt synthesizes DNA sequence dna;Blocker selects TTAGATAATGTGGTA, and 3 ' end biotin modifications, centre adds at random Five XNA modifications.The IXNA includes the one kind in A, C, G, T, U or mC Liu Zhong yu bases.Step(1)The extraction DNA methods Using common pyrolysis method, proteinase-K pathway, saturated phenol method or WATER-WASHING METHOD combination commercial kit method.
Embodiment 1:
Shigella detection method of content of the present invention, comprises the following steps:(1)The measuring samples containing Shigella are taken, base is extracted Because of a group DNA:3g measuring samples to the concussion 5min that in the centrifuge tube of the 50mL for filling 27mLGN enrichment liquids, is vortexed are weighed, mixing is equal It is even to obtain mixture;Take 0.5mLGN enrichment liquids dilution mix mixture be added to through sterilizing 4.5mLGN enrichment liquids in obtain Each dilution gradient, if 5-7 dilution factor;Using three pipes or five pipe parallel methods, each dilution factor sets 3 repeating samples, in 37 DEG C culture 18-24h, until mixed liquor only stops culture, referred to as bacterium solution in slight haze in test tube;(2)Selective enrichment is trained Support:Removing step(1)Bacterium solution 0.5mL is added in Shigella increasing bacterial context soup in each pipe of gained, 37 DEG C of culture 18h;(3)DNA Extract:Removing step(2)Bacterium solution 2mL is added in 10mL centrifuge tubes in each pipe of gained, 10000g centrifugation 3min, supernatant discarded Liquid;1mL sterile PBS buffers are added, uniform, 10000g centrifugation 3min, abandoning supernatant is gently blown and beaten;Add 10 μ L ultrapure Water, liquid nitrogen frozen and boiling water bath multigelation 3 times, then 10000g centrifugations 3min take supernatant, complete DNA and extract;After extraction The DNA short time in 4 DEG C preservation, for a long time -20 DEG C preservation;(4)Set up the real-time fluorescence list primer isothermal duplication of Shigella 25 μ L reaction systems:RNA/DNA combinations primer 5.6 μm of ol/L, Blocker0.36 μm of ol/L, 10 × BstBuffer2.5 μ L, BstDNApolymerase20U、10×RNaseHBuffer2.5μL、RNaseH5U、dNTPs0.2mmol/L、 MgCl23.5mmol/L, RNaseInhibitor16U, the μ L of DNA profiling 1, the μ L of SYBERGreen II 0.3, remaining uses sterilizing DEPC Water supplies system;The SYBERGreen II is 300 times of dilutions;By DNA profiling, combination primer, Blocker and reaction buffer Mixed liquor through 99 DEG C, be cooled to 60 DEG C after 90s treatment, be rapidly added RNaseH and BstDNA polymerases, it is fixed in real-time fluorescence 58 DEG C of reaction 40min, real-time monitoring fluorescence signal in course of reaction in amount PCR instrument;(5)Detection and analysis:Analysis detecting data.Institute Stating primer selects GCUUAGUGA-TTTGATGGTGTC, 5 ' end 9nt to synthesize RNA sequence, and 3 ' end 12nt synthesize DNA sequence dna; Blocker selects TTAGATAATGTGGTA, and 3 ' end biotin modifications are middle random plus five XNA modifications.The IXNA Including the one kind in A, C, G, T, U or mC Liu Zhong yu bases.Step(1)The extraction DNA methods use common pyrolysis method, albumen Enzyme K methods, saturated phenol method or WATER-WASHING METHOD combination commercial kit method.
Embodiment 2:
Shigella detection method of content of the present invention, comprises the following steps:(1)The measuring samples containing Shigella are taken, base is extracted Because of a group DNA:3g measuring samples to the concussion 10min that in the centrifuge tube of the 50mL for filling 27mLGN enrichment liquids, is vortexed are weighed, mixing is equal It is even to obtain mixture;Take 0.5mLGN enrichment liquids dilution mix mixture be added to through sterilizing 4.5mLGN enrichment liquids in obtain Each dilution gradient, if 7 dilution factors;Using three pipes or five pipe parallel methods, each dilution factor sets 5 repeating samples, in 37 DEG C Culture 24h, until mixed liquor only stops culture, referred to as bacterium solution in slight haze in test tube;(2)Selective enrichment culture:Move Take step(1)Bacterium solution 0.5mL is added in Shigella increasing bacterial context soup in each pipe of gained, 37 DEG C of culture 24h;(3)DNA is extracted: Removing step(2)Bacterium solution 2mL is added in 10mL centrifuge tubes in each pipe of gained, 10000g centrifugation 3min, abandoning supernatant;Again plus Enter 1mL sterile PBS buffers, gently blow and beat uniform, 10000g centrifugation 3min, abandoning supernatant;Add 10 μ L ultra-pure waters, liquid nitrogen Freezing and boiling water bath multigelation 3 times, then 10000g centrifugations 3min take supernatant, complete DNA and extract;DNA after extraction is short 4 DEG C of preservations in time, for a long time -20 DEG C of preservations;(4)Set up the μ L of real-time fluorescence list primer isothermal duplication 25 reactions of Shigella System:RNA/DNA combinations primer 5.6 μm of ol/L, Blocker0.36 μm of ol/L, 10 × BstBuffer2.5 μ L, BstDNApolymerase20U、10×RNaseHBuffer2.5μL、RNaseH5U、dNTPs0.2mmol/L、 MgCl23.5mmol/L, RNaseInhibitor16U, the μ L of DNA profiling 1, the μ L of SYBERGreen II 0.3, remaining uses sterilizing DEPC Water supplies system;The SYBERGreen II is 300 times of dilutions;By DNA profiling, combination primer, Blocker and reaction buffer Mixed liquor through 99 DEG C, be cooled to 60 DEG C after 90s treatment, be rapidly added RNaseH and BstDNA polymerases, it is fixed in real-time fluorescence 58 DEG C of reaction 40min, real-time monitoring fluorescence signal in course of reaction in amount PCR instrument;(5)Detection and analysis:Analysis detecting data.Institute Stating primer selects GCUUAGUGA-TTTGATGGTGTC, 5 ' end 9nt to synthesize RNA sequence, and 3 ' end 12nt synthesize DNA sequence dna; Blocker selects TTAGATAATGTGGTA, and 3 ' end biotin modifications are middle random plus five XNA modifications.The IXNA Including the one kind in A, C, G, T, U or mC Liu Zhong yu bases.Step(1)The extraction DNA methods use common pyrolysis method, albumen Enzyme K methods, saturated phenol method or WATER-WASHING METHOD combination commercial kit method.
Embodiment 3:
Shigella detection method of content of the present invention, comprises the following steps:(1)The measuring samples containing Shigella are taken, base is extracted Because of a group DNA:3g measuring samples to the concussion 8min that in the centrifuge tube of the 50mL for filling 27mLGN enrichment liquids, is vortexed are weighed, mixing is equal It is even to obtain mixture;Take 0.5mLGN enrichment liquids dilution mix mixture be added to through sterilizing 4.5mLGN enrichment liquids in obtain Each dilution gradient, if 6 dilution factors;Using three pipes or five pipe parallel methods, each dilution factor sets 3-5 repeating sample, in 37 DEG C culture 20h, until mixed liquor only stops culture, referred to as bacterium solution in slight haze in test tube;(2)Selective enrichment culture: Removing step(1)Bacterium solution 0.5mL is added in Shigella increasing bacterial context soup in each pipe of gained, 37 DEG C of culture 20h;(3)DNA is carried Take:Removing step(2)Bacterium solution 2mL is added in 10mL centrifuge tubes in each pipe of gained, 10000g centrifugation 3min, abandoning supernatant; 1mL sterile PBS buffers are added, uniform, 10000g centrifugation 3min, abandoning supernatant is gently blown and beaten;10 μ L ultra-pure waters are added, Liquid nitrogen frozen and boiling water bath multigelation 3 times, then 10000g centrifugations 3min take supernatant, complete DNA and extract;After extraction 4 DEG C of preservations in the DNA short time, for a long time -20 DEG C of preservations;(4)Set up the μ of real-time fluorescence list primer isothermal duplication 25 of Shigella L reaction systems:RNA/DNA combinations primer 5.6 μm of ol/L, Blocker0.36 μm of ol/L, 10 × BstBuffer2.5 μ L, BstDNApolymerase20U、10×RNaseHBuffer2.5μL、RNaseH5U、dNTPs0.2mmol/L、 MgCl23.5mmol/L, RNaseInhibitor16U, the μ L of DNA profiling 1, the μ L of SYBERGreen II 0.3, remaining uses sterilizing DEPC Water supplies system;The SYBERGreen II is 300 times of dilutions;By DNA profiling, combination primer, Blocker and reaction buffer Mixed liquor through 99 DEG C, be cooled to 60 DEG C after 90s treatment, be rapidly added RNaseH and BstDNA polymerases, it is fixed in real-time fluorescence 58 DEG C of reaction 40min, real-time monitoring fluorescence signal in course of reaction in amount PCR instrument;(5)Detection and analysis:Analysis detecting data.Institute Stating primer selects GCUUAGUGA-TTTGATGGTGTC, 5 ' end 9nt to synthesize RNA sequence, and 3 ' end 12nt synthesize DNA sequence dna; Blocker selects TTAGATAATGTGGTA, and 3 ' end biotin modifications are middle random plus five XNA modifications.The IXNA Including the one kind in A, C, G, T, U or mC Liu Zhong yu bases.Step(1)The extraction DNA methods use common pyrolysis method, albumen Enzyme K methods, saturated phenol method or WATER-WASHING METHOD combination commercial kit method.
It is obvious to a person skilled in the art that the invention is not restricted to the details of above-mentioned one exemplary embodiment, Er Qie In the case of without departing substantially from spirit or essential attributes of the invention, the present invention can be in other specific forms realized.Therefore, no matter From the point of view of which point, embodiment all should be regarded as exemplary, and be nonrestrictive, the scope of the present invention is by appended power Profit requires to be limited rather than described above, it is intended that all in the implication and scope of the equivalency of claim by falling Change is included in the present invention.Moreover, it will be appreciated that although the present specification is described in terms of embodiments, not each Implementation method only includes an independent technical scheme, and this narrating mode of specification is only this area for clarity Specification an as entirety, the technical scheme in each embodiment should can also be formed this by technical staff through appropriately combined Art personnel may be appreciated other embodiment.

Claims (4)

1. a kind of Shigella detection method of content, it is characterised in that comprise the following steps:(1)Take containing the to be checked of Shigella Sample, extracts genomic DNA:Weigh 3g measuring samples to the concussion that in the centrifuge tube of the 50mL for filling 27mLGN enrichment liquids, is vortexed 5-10min, is well mixed to obtain mixture;The mixture for taking the dilution mixing of 0.5mLGN enrichment liquids is added to by sterilizing Each dilution gradient is obtained in 4.5mLGN enrichment liquids, if 5-7 dilution factor;Using three pipes or five pipe parallel methods, each dilution Degree sets 3-5 repeating sample, and 18-24h is cultivated in 37 DEG C, until mixed liquor only stops culture in slight haze in test tube, referred to as Bacterium solution;(2)Selective enrichment culture:Removing step(1)Bacterium solution 0.5mL is added to Shigella increasing bacterial context soup in each pipe of gained In, 37 DEG C of culture 18-24h;(3)DNA is extracted:Removing step(2)Bacterium solution 2mL is added in 10mL centrifuge tubes in each pipe of gained, 10000g is centrifuged 3min, abandoning supernatant;1mL sterile PBS buffers are added, uniform, 10000g centrifugation 3min are gently blown and beaten, Abandoning supernatant;Add 10 μ L ultra-pure waters, liquid nitrogen frozen and boiling water bath multigelation 3 times, then 10000g centrifugations 3min take Clear liquid, completes DNA and extracts;4 DEG C of preservations in the DNA short time after extraction, for a long time -20 DEG C of preservations;(4)Set up Shigella The μ L reaction systems of real-time fluorescence list primer isothermal duplication 25:5.6 μm of ol/L, Blocker0.36 μm of ol/ of RNA/DNA combination primers L、10×BstBuffer2.5μL、BstDNApolymerase20U、10×RNaseHBuffer2.5μL、RNaseH5U、 DNTPs0.2mmol/L, MgCl23.5mmol/L, RNaseInhibitor16U, the μ L of DNA profiling 1, the μ L of SYBERGreen II 0.3, Remaining supplies system with sterilizing DEPC water;The SYBERGreen II is 300 times of dilutions;By DNA profiling, combination primer, The mixed liquor of Blocker and reaction buffer is cooled to 60 DEG C through 99 DEG C after 90s treatment, is rapidly added RNaseH and BstDNA Polymerase, 58 DEG C of reaction 40min, real-time monitoring fluorescence signal in course of reaction on real-time fluorescence quantitative PCR instrument;(5)Detection Analysis:Analysis detecting data.
2. Shigella detection method of content according to claim 1, it is characterised in that the primer is selected GCUUAGUGA-TTTGATGGTGTC, 5 ' end 9nt synthesize RNA sequence, and 3 ' end 12nt synthesize DNA sequence dna;Blocker is selected TTAGATAATGTGGTA, 3 ' end biotin modifications are middle random plus five XNA modifications.
3. Shigella detection method of content according to claim 2, it is characterised in that the IXNA include A, C, G, T, One kind in U or mC Liu Zhong yu bases.
4. Shigella detection method of content according to claim 1, it is characterised in that step(1)The extraction DNA side Method uses common pyrolysis method, proteinase-K pathway, saturated phenol method or WATER-WASHING METHOD combination commercial kit method.
CN201611069304.9A 2016-11-29 2016-11-29 A kind of Shigella detection method of content Pending CN106755332A (en)

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EP2418286A1 (en) * 2010-08-10 2012-02-15 QIAGEN GmbH Improved method for isothermal amplification of nucleic acids
CN101993954A (en) * 2010-12-01 2011-03-30 江南大学 Fast quantitative detection method of shigella contained in sludge
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