CN106755172B - New way for synthesizing acetyl coenzyme A and derivative products thereof by using glycolaldehyde - Google Patents

New way for synthesizing acetyl coenzyme A and derivative products thereof by using glycolaldehyde Download PDF

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CN106755172B
CN106755172B CN201611167145.6A CN201611167145A CN106755172B CN 106755172 B CN106755172 B CN 106755172B CN 201611167145 A CN201611167145 A CN 201611167145A CN 106755172 B CN106755172 B CN 106755172B
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transaldolase
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马红武
杨雪
袁倩倩
江会锋
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Abstract

The invention discloses a new way for synthesizing acetyl coenzyme A and derivative products thereof by using glycolaldehyde, which comprises a reaction of reacting glycolaldehyde with 3-glyceraldehyde phosphate to generate 5-arabinose phosphate under enzyme catalysis, wherein the enzyme is selected from aldolase, transaldolase, isozyme and mutase thereof. The method has the advantages of high catalytic rate, high reaction efficiency, low cost, strong affinity with substrates and high catalytic activity of auxiliary enzymes Rpi A and Rpe from a pentose phosphate pathway, high catalytic rate, carbon theoretical yield of a reaction route of 100 percent, no carbon loss, recycling of G3P, enzyme and coenzyme, and the like. The method of the preparation method can play a more obvious role in the production process of controllable substrate level, such as in-vitro continuous multi-enzyme catalysis, fed-batch fermentation, continuous fermentation and the like.

Description

利用乙醇醛合成乙酰辅酶A及其衍生产品的新途径A New Approach to Synthesize Acetyl-CoA and Its Derivatives Using Glycolaldehyde

技术领域technical field

本发明涉及生物医药技术领域,具体涉及一种利用乙醇醛合成乙酰辅酶A及其衍生产品的方法。The invention relates to the technical field of biomedicine, in particular to a method for synthesizing acetyl-CoA and derivatives thereof by using glycolaldehyde.

背景技术Background technique

乙酰辅酶A(AcCoA)是合成必要的生物化合物的关键中间体,该必要生物化合物包括聚酮化合物、脂肪酸、类异戊二烯、生物碱、维生素和氨基酸等。来源于AcCoA的代谢产物为初级和次级代谢物,其包括工业效用的化合物。AcCoA可以由乙酰磷酸(AcP)生成(如可通过磷酸乙酰转移酶Pta(EC 2.3.1.8)催化得到),继而生成一系列以AcCoA为平台的生物产品,广泛应用于生物催化等领域。AcP的合成方法有:Acetyl coenzyme A (AcCoA) is a key intermediate in the synthesis of essential biological compounds, including polyketides, fatty acids, isoprenoids, alkaloids, vitamins, and amino acids. Metabolites derived from AcCoA are primary and secondary metabolites, which include compounds of industrial utility. AcCoA can be generated from acetyl phosphate (AcP) (eg, catalyzed by phosphoacetyltransferase Pta (EC 2.3.1.8)), and then generate a series of biological products based on AcCoA, which are widely used in biocatalysis and other fields. The synthetic methods of AcP are as follows:

专利申请WO2015/144447A1公开了一种利用磷酸转酮酶(EC 4.1.2.9、果糖-6-磷酸磷酸转酮酶EC4.1.2.22)或磺基乙醛乙酰转移酶(EC 2.3.3.15)催化甲醛生产乙酰磷酸的方法,反应方程如下:Patent application WO2015/144447A1 discloses a method utilizing phosphoketolase (EC 4.1.2.9, fructose-6-phosphate phosphoketolase EC4.1.2.22) or sulfoacetaldehyde acetyltransferase (EC 2.3.3.15) catalyzed Formaldehyde produces the method for acetylphosphoric acid, reaction equation is as follows:

2CH2O+磷酸→乙酰磷酸+H2O。2CH 2 O+phosphoric acid→acetylphosphoric acid+H 2 O.

上述制备反应使用的磷酸转酮酶,与甲醛的亲和力差,催化效率不及转化其最适底物5-磷酸木酮糖时的百分之一,并且微生物细胞对于甲醛的耐受能力普遍较差,可应用拓展的空间较小。The phosphoketolase used in the above preparation reaction has poor affinity with formaldehyde, the catalytic efficiency is less than 1% of the conversion of its optimum substrate 5-phosphate xylulose, and the tolerance of microbial cells to formaldehyde is generally poor. , the applicable expansion space is small.

专利申请WO2015/181074A1公开了利用磷酸转酮酶(EC 4.1.2.9、果糖-6-磷酸磷酸转酮酶EC4.1.2.22)催化D-果糖生产D-赤藓糖和乙酰磷酸的方法,该方法还包括将D-赤藓糖转化为乙醇醛,然后再进一步转化为乙酰磷酸,反应过程如下:Patent application WO2015/181074A1 discloses a method for catalyzing D-fructose to produce D-erythrose and acetyl phosphate using phosphoketolase (EC 4.1.2.9, fructose-6-phosphate phosphoketolase EC 4.1.2.22), which The method also includes converting D-erythrose into glycolaldehyde, which is further converted into acetyl phosphate, and the reaction process is as follows:

Figure BDA0001182764410000021
Figure BDA0001182764410000021

上述乙酰磷酸的制备方法的反应速率较低,磷酸转酮酶对于果糖的转化数Kcat仅为0.1/s,效率很低,并且反应时间较长(18h)会对酶和产物的稳定性提出考验。另外,第三步D-erythrose裂解为乙醇醛的反应是可逆过程,其反应速率受到裂解后的乙醇醛浓度的影响,使体系中很难积累高浓度的乙醇醛,这会导致乙酰磷酸的生成速率难以保证。第二步酶促反应生成的乙酰磷酸很可能会由于产物抑制而影响最后一步酶促反应的收率,如果第二步酶促反应生成乙酰磷酸后即时除去,会使整个制备工艺操作复杂化。The reaction rate of the above-mentioned preparation method of acetyl phosphate is low, the conversion number K cat of phosphoketolase to fructose is only 0.1/s, the efficiency is very low, and the reaction time is long (18h), which will raise the stability of the enzyme and the product. test. In addition, the third step of the cleavage of D-erythrose into glycolaldehyde is a reversible process, and its reaction rate is affected by the concentration of glycolaldehyde after the cleavage, making it difficult to accumulate high concentrations of glycolaldehyde in the system, which will lead to the formation of acetyl phosphate The rate is not guaranteed. The acetyl phosphate generated in the second enzymatic reaction is likely to affect the yield of the last enzymatic reaction due to product inhibition. If the acetyl phosphate generated in the second enzymatic reaction is removed immediately, the entire preparation process will be complicated.

发明内容SUMMARY OF THE INVENTION

为克服现有技术的不足,本发明一方面提供一种5-磷酸阿拉伯糖(Ara5P)的制备方法,所述方法包括在酶催化下乙醇醛和3-磷酸甘油醛反应生成Ara5P,所述的酶选自:醛缩酶、转醛醇酶、及其同工酶、突变酶。In order to overcome the deficiencies of the prior art, one aspect of the present invention provides a method for preparing arabinose 5-phosphate (Ara5P), the method comprising the reaction of glycolaldehyde and glyceraldehyde 3-phosphate under enzyme catalysis to generate Ara5P, the The enzyme is selected from the group consisting of aldolase, transaldolase, and isoenzymes and mutant enzymes thereof.

优选的,所述的制备的反应是通过微生物来进行的;Preferably, the reaction of the preparation is carried out by microorganisms;

优选的,所述的醛缩酶为果糖二磷酸醛缩酶(EC 4.1.2.13);Preferably, the aldolase is fructose bisphosphate aldolase (EC 4.1.2.13);

优选的,所述的转醛醇酶为大肠杆菌Escherichia coli来源的转醛醇酶(EC2.2.1.2)的突变酶Tal BF178YPreferably, the transaldolase is a mutant enzyme Tal B F178Y of the transaldolase (EC2.2.1.2) derived from Escherichia coli.

本发明另一方面还提供一种用于制备Ara5P的组合物,包括:Another aspect of the present invention also provides a composition for preparing Ara5P, comprising:

(1)乙醇醛,(1) Glycoaldehyde,

(2)3-磷酸甘油醛,(2) glyceraldehyde 3-phosphate,

(3)醛缩酶、转醛醇酶、或其同工酶、突变酶;(3) aldolase, transaldolase, or its isoenzyme, mutant enzyme;

或,or,

(1)乙醇醛,(1) Glycoaldehyde,

(2)3-磷酸甘油醛,(2) glyceraldehyde 3-phosphate,

(3)表达醛缩酶、转醛醇酶、或其同工酶、突变酶的微生物;(3) Microorganisms expressing aldolase, transaldolase, or isozymes or mutant enzymes thereof;

优选的,所述的醛缩酶为果糖二磷酸醛缩酶(EC 4.1.2.13);Preferably, the aldolase is fructose bisphosphate aldolase (EC 4.1.2.13);

优选的,所述的转醛醇酶为大肠杆菌Escherichia coli来源的转醛醇酶(EC2.2.1.2)的突变酶Tal BF178YPreferably, the transaldolase is a mutant enzyme Tal B F178Y of the transaldolase (EC2.2.1.2) derived from Escherichia coli.

本发明另一方面提供一种乙酰磷酸(AcP)的制备方法,所述方法包括上述Ara5P的制备方法步骤;优选的,所述的AcP的制备方法还包括Ara5P转化为5-磷酸木酮糖(Xu5P)再进一步转化为AcP的步骤;Another aspect of the present invention provides a preparation method of acetyl phosphate (AcP), the method comprises the steps of the above-mentioned preparation method of Ara5P; preferably, the preparation method of AcP further comprises the conversion of Ara5P into xylulose-5-phosphate ( Xu5P) is further converted into the step of AcP;

优选的,所述的Ara5P转化为Xu5P的步骤包括Ara5P转化为5-磷酸核酮糖(Ru5P)再进一步转化为Xu5P的步骤;Preferably, the step of converting Ara5P into Xu5P comprises the step of converting Ara5P into ribulose 5-phosphate (Ru5P) and further converting it into Xu5P;

优选的,所述的Xu5P转化为AcP的反应包括Xu5P和磷酸在磷酸转酮酶催化下生成AcP的步骤;Preferably, the reaction of converting Xu5P into AcP comprises the step of generating AcP under the catalysis of phosphoketolase by Xu5P and phosphoric acid;

更优选的,所述的磷酸转酮酶为磷酸转酮酶(EC 4.1.2.9)或果糖-6-磷酸磷酸转酮酶(EC 4.1.2.22);More preferably, the phosphoketolase is phosphoketolase (EC 4.1.2.9) or fructose-6-phosphate phosphoketolase (EC 4.1.2.22);

所述的磷酸转酮酶可来自各种种属的微生物表达、人工合成及纯化过程,特别是来源于微生物如优选来源于Pseudomonas stutzeri(如施氏假单胞菌Pseudomonasstutzeri A1501)和Bifidobacterium adolescentis菌株的磷酸转酮酶在上述反应中均可发挥良好的催化作用;The phosphoketolase can be derived from the microorganism expression, artificial synthesis and purification process of various species, especially derived from microorganisms such as preferably derived from Pseudomonas stutzeri (such as Pseudomonas stutzeri Pseudomonas stutzeri A1501) and Bifidobacterium adolescentis strains. Phosphotransketolase can play a good catalytic role in the above reactions;

优选的,Xu5P转化为AcP的反应体系中还包括磷酸转酮酶的辅酶,如焦磷酸硫胺素;Preferably, the reaction system for converting Xu5P into AcP also includes a coenzyme of phosphoketolase, such as thiamine pyrophosphate;

优选的,所述的制备的反应是通过微生物来进行的。Preferably, the reaction of the preparation is carried out by microorganisms.

本发明另一方面提供一种用于制备AcP的组合物,包括上述用于制备Ara5P的组合物;Another aspect of the present invention provides a composition for preparing AcP, including the above-mentioned composition for preparing Ara5P;

优选的,上述用于制备AcP的组合物还包括磷酸、磷酸转酮酶;Preferably, the above-mentioned composition for preparing AcP also includes phosphoric acid and phosphoketolase;

更优选的,上述用于制备AcP的组合物还包括磷酸转酮酶辅酶;More preferably, the above-mentioned composition for preparing AcP also includes phosphoketolase coenzyme;

优选的,上述用于制备AcP的组合物还包括可催化Ara5P生成Xu5P的酶,该酶可为一种酶,也可为两种以上的酶的组合,优选为核糖-5-磷酸异构酶和核酮糖-磷酸3-异构酶的组合;Preferably, the above-mentioned composition for preparing AcP also includes an enzyme that can catalyze Ara5P to generate Xu5P, the enzyme can be one kind of enzyme, or a combination of two or more kinds of enzymes, preferably ribose-5-phosphate isomerase in combination with ribulose-phosphate 3-isomerase;

在本发明的一个优选实施例中,上述用于制备AcP的组合物包括:In a preferred embodiment of the present invention, the above-mentioned composition for preparing AcP comprises:

(1)乙醇醛,(1) Glycoaldehyde,

(2)3-磷酸甘油醛,(2) glyceraldehyde 3-phosphate,

(3)醛缩酶、转醛醇酶、或其同工酶、突变酶,(3) Aldolase, transaldolase, or its isoenzyme, mutant enzyme,

(4)核糖-5-磷酸异构酶,(4) ribose-5-phosphate isomerase,

(5)核酮糖-磷酸3-异构酶,(5) Ribulose-phosphate 3-isomerase,

(6)磷酸、磷酸转酮酶、辅酶。(6) Phosphate, phosphoketolase, coenzyme.

优选的,所述的醛缩酶为果糖二磷酸醛缩酶(EC 4.1.2.13);Preferably, the aldolase is fructose bisphosphate aldolase (EC 4.1.2.13);

优选的,所述的转醛醇酶为大肠杆菌Escherichia coli来源的转醛醇酶(EC2.2.1.2)的突变酶Tal BF178YPreferably, the transaldolase is the mutant enzyme Tal B F178Y of the transaldolase (EC2.2.1.2) derived from Escherichia coli;

优选的,所述的磷酸转酮酶为磷酸转酮酶(EC 4.1.2.9)或果糖-6-磷酸磷酸转酮酶(EC 4.1.2.22);Preferably, the phosphoketolase is phosphoketolase (EC 4.1.2.9) or fructose-6-phosphate phosphoketolase (EC 4.1.2.22);

优选的,所述的磷酸转酮酶辅酶为焦磷酸硫胺素;Preferably, the phosphoketolase coenzyme is thiamine pyrophosphate;

在本发明的一个更优选实施例中,上述用于制备AcP的组合物包括:In a more preferred embodiment of the present invention, the above-mentioned composition for preparing AcP comprises:

(1)乙醇醛,(1) Glycoaldehyde,

(2)3-磷酸甘油醛,(2) glyceraldehyde 3-phosphate,

(3)果糖二磷酸醛缩酶(EC 4.1.2.13)或大肠杆菌Escherichia coli来源的转醛醇酶(Tal B)的突变酶Tal BF178Y(3) Fructose bisphosphate aldolase (EC 4.1.2.13) or a mutant enzyme Tal B F178Y of Escherichia coli-derived transaldolase (Tal B),

(4)核糖-5-磷酸异构酶(EC 5.3.1.6),(4) ribose-5-phosphate isomerase (EC 5.3.1.6),

(5)核酮糖-磷酸3-异构酶(EC 5.1.3.1),(5) Ribulose-phosphate 3-isomerase (EC 5.1.3.1),

(6)磷酸、磷酸转酮酶(EC 4.1.2.9)或果糖-6-磷酸磷酸转酮酶(EC4.1.2.22)及焦磷酸硫胺素。(6) Phosphate, phosphoketolase (EC 4.1.2.9) or fructose-6-phosphate phosphoketolase (EC 4.1.2.22) and thiamine pyrophosphate.

AcP的稳定性较差,在实际应用中常做成乙酰磷酸盐的形式,本发明另一方面提供一种乙酰磷酸盐的制备方法,所述方法包括上述Ara5P的制备方法步骤;The stability of AcP is poor, and it is often made into the form of acetyl phosphate in practical applications. On the other hand, the present invention provides a preparation method of acetyl phosphate, which comprises the above-mentioned steps of the preparation method of Ara5P;

优选的,所述的乙酰磷酸盐的制备方法包括上述AcP的制备方法步骤;Preferably, the preparation method of the acetyl phosphate salt comprises the steps of the above-mentioned preparation method of AcP;

优选的,所述的乙酰磷酸盐包括:乙酰磷酸二锂盐、乙酰磷酸二钠盐、乙酰磷酸二铵盐。Preferably, the acetyl phosphate includes: acetyl phosphate dilithium salt, acetyl phosphate disodium salt, acetyl phosphate diammonium salt.

本发明另一方面提供一种乙酰辅酶A(AcCoA)的制备方法,所述方法包括上述Ara5P的制备方法步骤;优选的,所述的AcCoA的制备方法包括上述AcP的制备方法步骤;Another aspect of the present invention provides a method for preparing acetyl coenzyme A (AcCoA), the method comprising the steps of the above-mentioned preparation method of Ara5P; preferably, the above-mentioned preparation method of AcCoA comprises the steps of the above-mentioned preparation method of AcP;

优选的,所述的AcCoA的制备方法还包括在乙酰磷酸转移酶(Pta)作用下AcP转化为AcCoA的步骤;Preferably, the preparation method of AcCoA further comprises the step of converting AcP into AcCoA under the action of acetyl phosphotransferase (Pta);

优选的,所述的制备的反应是通过微生物来进行的。Preferably, the reaction of the preparation is carried out by microorganisms.

本发明另一方面提供一种AcCoA衍生化合物的制备方法,所述方法包括上述Ara5P的制备方法步骤,优选的,上述AcP的制备方法步骤,更优选的,上述AcCoA的制备方法步骤;在本发明的一个优选实施例中,所述的AcCoA衍生化合物选自:丙酮、异丙醇、乙酸、L-谷氨酸、L-谷氨酰胺、L-脯氨酸、L-精氨酸、L-亮氨酸、L-半胱氨酸、琥珀酸酯和聚羟基脂肪酸酯;Another aspect of the present invention provides a method for preparing an AcCoA derivative compound, the method comprising the steps of the above-mentioned preparation method of Ara5P, preferably, the above-mentioned steps of the preparation method of AcP, more preferably, the above-mentioned steps of the preparation method of AcCoA; in the present invention In a preferred embodiment, the AcCoA derivative compound is selected from: acetone, isopropanol, acetic acid, L-glutamic acid, L-glutamine, L-proline, L-arginine, L- Leucine, L-cysteine, succinate and polyhydroxyalkanoate;

在本发明的另一个优选实施例中,所述的AcCoA衍生化合物为聚3-羟基丁酸酯(PHB);In another preferred embodiment of the present invention, the AcCoA derivative compound is poly-3-hydroxybutyrate (PHB);

优选的,所述的制备的反应是通过微生物来进行的。Preferably, the reaction of the preparation is carried out by microorganisms.

上述Ara5P、AcP、乙酰磷酸盐、AcCoA、AcCoA衍生化合物的制备方法中所述的3-磷酸甘油醛可采用商购,也可采用现有技术中已知的方法制备得到,如利用葡萄糖、甘油、磷酸二羟基丙酮等制备得到,例如磷酸二羟基丙酮可以在丙糖磷酸异构酶作用下转化为3-磷酸甘油醛;也可在上述制备方法的反应体系中加入3-磷酸甘油醛的制备反应物,实现在线制备;3-磷酸甘油醛的来源并不会限制本发明的范围。The glyceraldehyde-3-phosphate described in the preparation method of the above-mentioned Ara5P, AcP, acetyl phosphate, AcCoA, AcCoA derivative compounds can be purchased commercially, and can also be prepared by methods known in the prior art, such as using glucose, glycerol , dihydroxyacetone phosphate, etc., for example, dihydroxyacetone phosphate can be converted into glyceraldehyde 3-phosphate under the action of triose phosphate isomerase; also can be prepared by adding glyceraldehyde 3-phosphate in the reaction system of the above preparation method The reactants are prepared online; the source of glyceraldehyde-3-phosphate does not limit the scope of the present invention.

上述Ara5P、AcP、乙酰磷酸盐、AcCoA、AcCoA衍生化合物的制备方法中所述的乙醇醛可由现有技术中已知的方法制备得到,如,乙醛的卤代反应、糖类的裂解反应等,其中,利用甲醛制备乙醇醛的成本较低,优选的,上述乙醇醛是利用甲醛按照现有技术优选如“甲醛合成乙醇醛研究及其应用进展”中记载的乙醇醛的制备方法和工艺(辛坤,李青松,贾冰,等.甲醛合成乙醇醛研究及其应用进展.天然气化工·C1化学与化工,2016(41):88-94)制备得到。Glycolaldehyde described in the preparation method of above-mentioned Ara5P, AcP, acetyl phosphate, AcCoA, AcCoA derivative compound can be prepared by methods known in the prior art, such as, the halogenation reaction of acetaldehyde, the cleavage reaction of carbohydrates, etc. , wherein, the cost that utilizes formaldehyde to prepare glycolaldehyde is lower, preferably, above-mentioned glycolaldehyde is to utilize formaldehyde according to prior art preferably as the preparation method and the technique of the glycolaldehyde recorded in " formaldehyde synthesizes glycolaldehyde research and its application progress ". Xin Kun, Li Qingsong, Jia Bing, et al. Research progress on the synthesis of glycolaldehyde from formaldehyde and its application. Natural gas chemical industry·C1 chemistry and chemical industry, 2016(41): 88-94) Prepared.

本发明另一方面提供一种上述醛缩酶、转醛醇酶或其同工酶、突变酶在制备Ara5P、AcP、乙酰磷酸盐、AcCoA、AcCoA衍生化合物中的应用。Another aspect of the present invention provides the use of the above-mentioned aldolase, transaldolase or its isoenzyme and mutant enzyme in the preparation of Ara5P, AcP, acetylphosphate, AcCoA, and AcCoA derivative compounds.

本发明另一方面还提供一种表达上述醛缩酶、转醛醇酶或其同工酶、突变酶的微生物在制备Ara5P、AcP、乙酰磷酸盐、AcCoA、AcCoA衍生化合物中的应用。Another aspect of the present invention also provides the use of a microorganism expressing the above-mentioned aldolase, transaldolase or its isoenzyme and mutant enzyme in the preparation of Ara5P, AcP, acetylphosphate, AcCoA, and AcCoA derivative compounds.

本发明涉及的酶可来自各种微生物来源及人工改造获得的同工酶、突变酶。The enzymes involved in the present invention can be derived from various microbial sources, isoenzymes and mutant enzymes obtained by artificial transformation.

上述制备的反应通过微生物来进行,如反应中涉及的反应物中的一种或两种以上,和/或,酶的一种或两种以上可由微生物在线生产。The reaction of the above preparation is carried out by microorganisms, such as one or more than two of the reactants involved in the reaction, and/or one or more than two kinds of enzymes can be produced online by microorganisms.

本发明提供的Ara5P的制备方法中醛缩酶或转醛醇酶不依赖于辅酶,催化效率较高(Vmax大于50U/mg),且醛缩酶及转醛醇酶的种类繁多,可优化空间很大。本发明中磷酸转酮酶的催化底物为5-磷酸木酮糖,是其最适底物,亲和力和酶活很高(Km约为10-45mM,Vmax为90-800U/mg),并且作为最后一步反应,该催化过程不可逆,使体系不受反应平衡的限制,既可以拉动醛缩酶和转醛醇酶的速率,又可以最大限度地提高乙酰磷酸的收率及促进3-磷酸甘油醛的回补。提供的AcP的制备方法,催化速率较高,反应路线的碳理论得率为100%,没有碳损失,G3P和酶均可循环使用,反应效率较高,成本有所降低,另外,来自磷酸戊糖途径的辅助酶RpiA及Rpe,与底物亲和力强、稳定性好、催化活性高。上述制备方法的该方法在补料发酵、连续发酵等可控制底物水平的生产过程中会发挥更为明显的优势。In the preparation method of Ara5P provided by the present invention, aldolase or transaldolase does not depend on coenzyme, the catalytic efficiency is high (V max is greater than 50U/mg), and there are many kinds of aldolase and transaldolase, which can be optimized Lots of space. The catalytic substrate of phosphoketolase in the present invention is xylulose 5-phosphate, which is the most suitable substrate, with high affinity and enzyme activity (K m is about 10-45 mM, V max is 90-800 U/mg) , and as the last step of the reaction, the catalytic process is irreversible, so that the system is not limited by the reaction equilibrium, which can not only drive the rate of aldolase and transaldolase, but also maximize the yield of acetyl phosphate and promote 3- Replenishment of glyceraldehyde phosphate. The preparation method of AcP provided has a high catalytic rate, the theoretical carbon yield of the reaction route is 100%, there is no carbon loss, G3P and enzymes can be recycled, the reaction efficiency is high, and the cost is reduced. The auxiliary enzymes RpiA and Rpe of the sugar pathway have strong affinity with the substrate, good stability and high catalytic activity. The method of the above preparation method will exert more obvious advantages in the production process of controlled substrate level, such as fed-feed fermentation and continuous fermentation.

附图说明Description of drawings

图1所示为本发明实施例1提供的生物合成途径示意图。Figure 1 shows a schematic diagram of the biosynthetic pathway provided in Example 1 of the present invention.

图2所示为本发明实施例6提供的GC-MS检测结果。Figure 2 shows the GC-MS detection results provided in Example 6 of the present invention.

具体实施方式Detailed ways

下面将结合本发明实施例中的附图,对本发明实施例中的技术方案进行清楚、完整地描述,显然,所描述的实施例仅是本发明一部分实施例,而不是全部的实施例。基于本发明中的实施例,本领域普通技术人员在没有作出创造性劳动前提下所获得的所有其他实施例,都属于本发明保护的范围。The technical solutions in the embodiments of the present invention will be clearly and completely described below with reference to the accompanying drawings in the embodiments of the present invention. Obviously, the described embodiments are only a part of the embodiments of the present invention, but not all of the embodiments. Based on the embodiments of the present invention, all other embodiments obtained by those of ordinary skill in the art without creative efforts shall fall within the protection scope of the present invention.

本发明的具体实施方式中涉及的利用乙醇醛生物合成乙酰磷酸的途径如图1所示,反应过程中涉及的反应物、中间体及酶的信息详见表1和2。The biosynthesis of acetyl phosphate using glycolaldehyde involved in the specific embodiment of the present invention is shown in FIG. 1 , and the information on the reactants, intermediates and enzymes involved in the reaction process is shown in Tables 1 and 2.

表1本发明中涉及的代谢物信息表Table 1 Metabolite information table involved in the present invention

Figure BDA0001182764410000081
Figure BDA0001182764410000081

表2本发明中涉及的酶信息表Table 2 Enzyme information table involved in the present invention

Figure BDA0001182764410000082
Figure BDA0001182764410000082

Figure BDA0001182764410000091
Figure BDA0001182764410000091

实施例1Example 1

乙醇醛为15mM的初始浓度下,在大肠杆菌Escherichia coli来源的Transaldolase Tal B的突变酶Tal BF178Y(在原酶基础上第178位氨基酸残基由F突变为Y)作用下,添加5mM G3P,进行Ara5的制备反应,反应1h后,将反应液冻干、衍生处理后,通过GC-MS定量检测到的Ara5P含量为2.5mM,Ara5P的平均合成速率为52.1μmol(Ara5P)/min/mg(酶蛋白)。Under the initial concentration of glycolaldehyde of 15mM, under the action of the mutant enzyme Tal B F178Y of Transaldolase Tal B derived from Escherichia coli (the 178th amino acid residue was mutated from F to Y on the basis of the original enzyme), 5mM G3P was added to carry out. The preparation reaction of Ara5, after 1 h of reaction, the reaction solution was lyophilized and derivatized, the content of Ara5P quantitatively detected by GC-MS was 2.5mM, and the average synthesis rate of Ara5P was 52.1 μmol (Ara5P)/min/mg (enzyme protein).

实施例2Example 2

乙醇醛在15mM的初始浓度下,ThDP浓度为1mM,PO4 3+浓度为2mM,加入Bifidobacterium adolescentis来源的Fpk(EC 4.1.2.22)、大肠杆菌来源的aldolase(Fsa,EC 4.1.2.13)、2mM G3P和微量的Rpi A、Rpe,进行AcP的制备反应。经过检测,乙醇醛的转化速率为16.3μmol(乙醇醛)/min/mg(酶蛋白)。At the initial concentration of 15 mM, Glycolaldehyde, ThDP concentration of 1 mM, PO 4 3+ concentration of 2 mM, Bifidobacterium adolescentis derived Fpk (EC 4.1.2.22), Escherichia coli derived aldolase (Fsa, EC 4.1.2.13), 2 mM were added G3P and a small amount of Rpi A and Rpe were used to prepare AcP. After testing, the conversion rate of glycolaldehyde was 16.3 μmol (glycolaldehyde)/min/mg (enzyme protein).

以上数据为反应体系进行3h的平均速率。The above data is the average rate of the reaction system for 3h.

实施例3Example 3

乙醇醛在15mM的初始浓度下,ThDP浓度为1mM,PO4 3+浓度为2mM,加入施氏假单胞菌Pseudomonas stutzeri A1501来源的Xpk(EC 4.1.2.9)、大肠杆菌Escherichia coli来源的Transaldolase(Tal B,EC 2.2.1.2)的突变酶Tal BF178Y、2mM G3P和微量的Rpi A、Rpe,进行AcP的制备反应。经过检测,乙醇醛的转化速率为19.7μmol(乙醇醛)/min/mg(酶蛋白)。Glycoaldehyde was added at an initial concentration of 15 mM, ThDP at 1 mM and PO 4 3+ at 2 mM, adding Xpk (EC 4.1.2.9) derived from Pseudomonas stutzeri A1501, Transaldolase (EC 4.1.2.9) derived from Escherichia coli Tal B, EC 2.2.1.2) mutant enzyme Tal B F178Y , 2 mM G3P and trace amounts of Rpi A and Rpe, were used to prepare AcP. After testing, the conversion rate of glycolaldehyde was 19.7 μmol (glycolaldehyde)/min/mg (enzyme protein).

以上数据为反应体系进行3h的平均速率。The above data is the average rate of the reaction system for 3h.

实施例4Example 4

乙醇醛在20mM的初始浓度下,ThDP浓度为1mM,PO4 3+浓度为2mM,加入施氏假单胞菌Pseudomonas stutzeri A1501来源的Xpk、大肠杆菌Escherichiacoli来源的Transaldolase(tal B,EC 2.2.1.2)的突变酶Tal BF178Y、4mM DHAP和微量的Rpi A、Rpe、TpiA,进行AcP的制备反应。经过检测,乙醇醛的转化速率为26.5μmol(乙醇醛)/min/mg(酶蛋白)。Glycoaldehyde at an initial concentration of 20 mM, ThDP concentration of 1 mM, PO 4 3+ concentration of 2 mM, added Xpk derived from Pseudomonas stutzeri A1501, Transaldolase derived from Escherichia coli (tal B, EC 2.2.1.2 ) of the mutant enzyme Tal B F178Y , 4 mM DHAP and a small amount of Rpi A, Rpe, TpiA, to carry out the preparation reaction of AcP. After testing, the conversion rate of glycolaldehyde was 26.5 μmol (glycolaldehyde)/min/mg (enzyme protein).

以上数据为反应体系进行3h的平均速率。The above data is the average rate of the reaction system for 3h.

实施例5Example 5

将合成磷酸转酮酶的基因整合到大肠杆菌Escherichia coli K-12 MG1655的基因组中,然后将含有用于合成聚3-羟基丁酸酯(PHB)的基因(PhaA、PhaB和PhaC)以及TalBF178Y的基因的质粒转入到上述菌株中,上述质粒选择I PTG诱导型启动子(其余需要的酶,在大肠杆菌中均已存在)。将上述菌株在LB培养基中进行培养,培养2.5h后,菌体OD600值达到0.8-1.0时,添加IPTG至终浓度0.5mM,诱导(22℃,6h)表达上述质粒上的目标酶蛋白。离心(4℃、8000r/min、5min)收集菌体后,用不添加碳源和氮源的M9培养基悬浮菌体后,重新离心收集菌体,此悬浮、离心过程重复三次,用于除去菌体中残留的碳源。将最终收集的菌体以上述M9培养基重新悬浮后,均分3份,分别添加0.02g、0.45g、0.9g乙醇醛(菌体中含有中间代谢物G3P,不需做额外添加),以上述M9培养基统一定容至30mL,发酵20h,观察发酵过程中细胞生长情况,发酵结束后收集菌体并检测发酵液中PHB含量。The genes for the synthesis of phosphoketolase were integrated into the genome of Escherichia coli K-12 MG1655, and then the genes for the synthesis of poly-3-hydroxybutyrate (PHB) (PhaA, PhaB and PhaC) and TalB F178Y were incorporated The plasmid of the gene is transferred into the above strain, and the above plasmid selects the IPTG inducible promoter (the rest of the required enzymes are already present in E. coli). The above strains were cultured in LB medium. After culturing for 2.5 hours, when the OD 600 value of the bacteria reached 0.8-1.0, IPTG was added to a final concentration of 0.5mM to induce (22°C, 6h) to express the target enzyme protein on the above plasmid . After centrifugation (4°C, 8000r/min, 5min) to collect the cells, use the M9 medium without carbon and nitrogen sources to suspend the cells, and then re-centrifuge to collect the cells. This suspension and centrifugation process is repeated three times to remove the cells. Residual carbon source in bacteria. After the final collected cells were resuspended in the above-mentioned M9 medium, they were equally divided into 3 parts, and 0.02g, 0.45g and 0.9g of glycolaldehyde were added respectively (the cells contained the intermediate metabolite G3P, no additional addition was required), The above-mentioned M9 medium was uniformly adjusted to 30 mL, fermented for 20 h, and the cell growth during the fermentation was observed. After the fermentation, the cells were collected and the PHB content in the fermentation broth was detected.

PHB的检测:将发酵液离心获得菌体后,冻干称重。利用体积比1:1的氯仿及酯化液(主要成分为甲醇)混合液4mL在100℃下对菌体冻干粉衍生4h,然后添加2mL超纯水,静置分层后,除去甲醇及细胞碎片等,取下层的3-羟基丁酸甲酯氯仿溶液,利用气质联用仪GC-MS对氯仿中的3-羟基丁酸甲酯进行定量检测。Detection of PHB: After centrifuging the fermentation broth to obtain bacterial cells, freeze-dried and weighed. Use 4 mL of a mixture of chloroform and esterification solution (the main component is methanol) with a volume ratio of 1:1 to derivatize the bacterial cell freeze-dried powder at 100 °C for 4 hours, then add 2 mL of ultrapure water, stand for stratification, remove methanol and Cell debris, etc., the lower layer of methyl 3-hydroxybutyrate chloroform solution was removed, and the methyl 3-hydroxybutyrate in chloroform was quantitatively detected by GC-MS.

实验结果:在上述发酵过程中,菌体可以进行正常的生长、繁殖;发酵结束后,相应的菌体干重分别为0.025g、0.076g、0.131g;经与标准品比对,测得样品中3-羟基丁酸的总含量分别为0.005g、0.066g、0.089g,碳源转化率在10%-20%之间。结果表明,菌体可以利用乙醇醛和自身含有的G3P、酶进行乙酰磷酸、乙酰辅酶A的合成,并继续生成乙酰辅酶A的衍生物PHB用于自身的碳源储备,乙醇醛在发酵过程中未表现出明显的细胞毒性,并可维持菌体正常的代谢消耗。Experimental results: During the above fermentation process, the bacteria can grow and reproduce normally; after the fermentation, the corresponding dry weights of the bacteria are 0.025g, 0.076g, and 0.131g respectively; after comparing with the standard product, the samples were measured. The total content of 3-hydroxybutyric acid was 0.005g, 0.066g and 0.089g respectively, and the conversion rate of carbon source was between 10% and 20%. The results show that the bacteria can use glycolaldehyde and G3P and enzymes contained in it to synthesize acetyl phosphate and acetyl-CoA, and continue to generate PHB, a derivative of acetyl-CoA, for its own carbon source storage. It does not show obvious cytotoxicity and can maintain the normal metabolic consumption of the bacteria.

实施例6Example 6

采用不同途径制备乙酰磷酸和AcCoA,反应2h,反应结束后检测Ara5P和AcCoA的含量,AcCoA的含量也可间接表示乙酰磷酸的合成量,反应物、酶及其添加量如表3所示。Acetyl phosphate and AcCoA were prepared in different ways, and reacted for 2 h. After the reaction, the contents of Ara5P and AcCoA were detected. The content of AcCoA can also indirectly represent the synthetic amount of acetyl phosphate. The reactants, enzymes and their additions are shown in Table 3.

Ara5P的检测:取50μL反应液,将反应液冻干后,利用30μL甲氧胺盐酸盐和90μL三甲基硅基三氟乙酰胺分别衍生1h后,衍生温度为37℃,利用GC-MS检测Ara5P含量。Detection of Ara5P: Take 50 μL of the reaction solution, freeze-dry the reaction solution, and derivatize it with 30 μL of methoxyamine hydrochloride and 90 μL of trimethylsilyl trifluoroacetamide for 1 h, respectively, at a derivatization temperature of 37 °C. Detection of Ara5P content.

AcCoA的检测:取50μL反应液,经10%的硫酸溶液终止反应后,用0.22μm的滤膜除去杂质后,进行液相检测,流动相A为0.2M、pH=5的磷酸二氢钠溶液,流动相B为乙腈,AcCoA的最大吸收峰出现在254nm。Detection of AcCoA: Take 50 μL of the reaction solution, stop the reaction with 10% sulfuric acid solution, remove impurities with a 0.22 μm filter membrane, and perform liquid phase detection. Mobile phase A is 0.2 M sodium dihydrogen phosphate solution with pH=5 , the mobile phase B was acetonitrile, and the maximum absorption peak of AcCoA appeared at 254 nm.

产物含量检测结果如表3所示。The product content detection results are shown in Table 3.

表3结果表明,上述反应体系中不添加醛缩酶或转醛醇酶时,没有Ara5P生成,AcCoA的生成量也非常少,反应转化率非常低;上述反应体系中添加醛缩酶或转醛醇酶和G3P后,可生成Ara5P,且反应转化率较高;在同时添加RpiA和Rpe后,生成的Ara5P会在RpiA、Rpe和F/Xpk作用下转化为乙酰磷酸,进一步被磷酸乙酰转移酶转化为AcCoA,且由Ara5P和AcCoA的检测结果可知,反应转化率非常高;在体系中同时添加DHAP和TpiA,替代G3P,也可获得与直接添加G3P相似的效果,达到较高的转化率。The results in Table 3 show that when aldolase or transaldolase is not added to the above reaction system, no Ara5P is generated, the amount of AcCoA produced is also very small, and the reaction conversion rate is very low; adding aldolase or transaldolase to the above reaction system After alcoholase and G3P, Ara5P can be generated, and the reaction conversion rate is high; after adding RpiA and Rpe at the same time, the generated Ara5P will be converted into acetyl phosphate under the action of RpiA, Rpe and F/Xpk, and further by phosphate acetyltransferase It is converted into AcCoA, and the detection results of Ara5P and AcCoA show that the reaction conversion rate is very high; adding DHAP and TpiA to the system at the same time, instead of G3P, can also obtain similar effects as directly adding G3P, and achieve a higher conversion rate.

表3体系的物质添加和代谢物生成情况表Table 3 Substance addition and metabolite generation in the system

(反应物或产物浓度单位:mM;酶用量单位:μg) (unit of concentration of reactant or product: mM; unit of enzyme dosage: μg)

Figure BDA0001182764410000121
Figure BDA0001182764410000121

备注:缓冲液中包含Tris、NaCl及MgCl2三种主要成分,pH7.5,37℃。Remarks: The buffer contains three main components, Tris, NaCl and MgCl 2 , pH7.5, 37℃.

另外,在含有反应物如GA、Phos、G3P、ThDP等的相同反应体系中,分别:A:不添加醛缩酶或转醛醇酶;B:添加Tal BF178Y;C:添加Tal BF178Y和F/Xpk;D:添加Tal BF178Y、F/Xpk以及Rpi A;E:添加Tal BF178Y、F/Xpk以及Rpi A和Rpe。GC-MS检测Ara5P含量,结果如图2中A-E图所示(Ara5P的出峰时间为37min)。由图2中各图及其对应的反应条件可以看出,仅在添加醛缩酶后,Ara5P生成;仅在同时添加Rpi A和Rpe时,生成的Ara5P才会被磷酸转酮酶较为彻底的分解。In addition, in the same reaction system containing reactants such as GA, Phos, G3P, ThDP, etc., respectively: A: without adding aldolase or transaldolase; B: adding Tal B F178Y ; C: adding Tal B F178Y and F/Xpk; D: Add Tal B F178Y , F/Xpk and Rpi A; E: Add Tal B F178Y , F/Xpk and Rpi A and Rpe. The content of Ara5P was detected by GC-MS, and the results were shown in the AE diagram in Figure 2 (the peak time of Ara5P was 37 min). It can be seen from the graphs in Fig. 2 and the corresponding reaction conditions that Ara5P is generated only after the addition of aldolase; only when Rpi A and Rpe are added at the same time, the generated Ara5P will be completely destroyed by phosphoketolase. break down.

以上所述仅为本发明的较佳实施例而已,并不用以限制本发明,凡在本发明的精神和原则之内,所作的任何修改、等同替换等,均应包含在本发明的保护范围之内。The above descriptions are only preferred embodiments of the present invention, and are not intended to limit the present invention. Any modifications, equivalent replacements, etc. made within the spirit and principles of the present invention shall be included in the protection scope of the present invention. within.

Claims (26)

1. A method for preparing 5-arabinose phosphate, which comprises reacting glycolaldehyde with 3-glyceraldehyde phosphate under the catalysis of an enzyme to produce the 5-arabinose phosphate, wherein the enzyme is selected from the group consisting of: aldolase, transaldolase, isozymes thereof, and mutant enzymes thereof.
2. The method of claim 1, wherein the reaction of preparation is carried out by a microorganism.
3. The method of claim 1, wherein the aldolase is fructose bisphosphate aldolase (EC4.1.2.13); and/or the presence of a gas in the gas,
the transaldolase is mutant enzyme TalB of transaldolase (EC2.2.1.2) derived from Escherichia coliF178Y
4. The process according to any one of claims 1 to 3, wherein the glycolaldehyde is prepared from formaldehyde.
5. The method of any one of claims 1-3, wherein the glyceraldehyde-3-phosphate is prepared from dihydroxyacetone phosphate.
6. A composition for preparing arabinose 5-phosphate comprising:
(1) the reaction product of the alcohol aldehyde and the alcohol aldehyde,
(2) the 3-phosphoric acid of the glyceraldehyde is taken as a raw material,
(3) aldolase, transaldolase, or isozyme or mutant enzyme thereof;
or the like, or, alternatively,
(1) the reaction product of the alcohol aldehyde and the alcohol aldehyde,
(2) the 3-phosphoric acid of the glyceraldehyde is taken as a raw material,
(3) a microorganism expressing an aldolase, transaldolase, or an isozyme or a mutant enzyme thereof.
7. The composition of claim 6, wherein said aldolase is fructose bisphosphate aldolase (EC4.1.2.13); and/or the presence of a gas in the gas,
the transaldolase is mutant enzyme TalB of transaldolase derived from Escherichia coliF178Y
8. A method for producing acetyl phosphate, which comprises the method for producing arabinose 5-phosphate according to any one of claims 1 to 5.
9. The method of claim 8, wherein the reaction of preparation is carried out by a microorganism.
10. The method of claim 8, further comprising the step of converting arabinose 5-phosphate to xylulose 5-phosphate and further to acetyl phosphate.
11. The method of claim 10, wherein the step of converting arabinose 5-phosphate to xylulose 5-phosphate comprises the step of converting arabinose 5-phosphate to ribulose 5-phosphate and further to xylulose 5-phosphate; and/or the presence of a gas in the gas,
the reaction for converting xylulose 5-phosphate into acetyl phosphate comprises the step of generating acetyl phosphate by xylulose 5-phosphate and phosphoric acid under the catalysis of phosphoketolase.
12. The method of claim 11, wherein said phosphoketolase is phosphoketolase (EC4.1.2.9) or fructose-6-phosphate phosphoketolase (EC4.1.2.22).
13. A composition for preparing acetyl phosphate comprising the composition for preparing arabinose 5-phosphate according to claim 6.
14. The composition of claim 13, wherein the composition further comprises a phosphate, phosphoketolase.
15. The composition of claim 14, wherein the composition further comprises a phosphoketolase coenzyme; and/or the presence of a gas in the gas,
the composition also includes an enzyme that catalyzes the production of xylulose-5-phosphate from arabinose-5-phosphate.
16. The composition of claim 15, wherein the composition comprises:
(1) the reaction product of the alcohol aldehyde and the alcohol aldehyde,
(2) the 3-phosphoric acid of the glyceraldehyde is taken as a raw material,
(3) aldolase, transaldolase, or isozymes, mutant enzymes thereof,
(4) a ribose-5-phosphate isomerase enzyme,
(5) a ribulose-phosphate 3-isomerase,
(6) phosphoric acid, phosphoketolase and coenzyme.
17. The composition of claim 16, wherein said aldolase is fructose bisphosphate aldolase (EC4.1.2.13); and/or the presence of a gas in the gas,
the transaldolase is mutant enzyme TalB of transaldolase derived from Escherichia coliF178Y(ii) a And/or the presence of a gas in the gas,
the phosphoketolase is phosphoketolase (EC4.1.2.9) or fructose-6-phosphoketolase (EC4.1.2.22).
18. A method for preparing an acetyl phosphate, the method comprising the method for preparing arabinose 5-phosphate according to any one of claims 1 to 5 or the method for preparing acetyl phosphate according to any one of claims 8 to 12.
19. The method of claim 18, wherein said acetyl phosphate comprises: lithium acetyl phosphate, disodium acetyl phosphate and diammonium acetyl phosphate.
20. A method for producing acetyl-coa, which comprises the method for producing arabinose 5-phosphate according to any one of claims 1 to 5 or the method for producing acetyl phosphate according to any one of claims 8 to 12.
21. The method of claim 20, wherein the reaction of preparation is carried out by a microorganism.
22. A method for producing an acetyl-coa derivative compound, which comprises the method for producing arabinose 5-phosphate according to any one of claims 1 to 5 or the method for producing acetyl phosphate according to any one of claims 8 to 12 or the method for producing acetyl-coa according to claim 20 or 21.
23. The method of claim 22, wherein said acetyl-CoA derivative compound is selected from the group consisting of acetone, isopropanol, acetic acid, L-glutamic acid, L-glutamine, L-proline, L-arginine, L-leucine, L-cysteine, succinate, and polyhydroxyalkanoates.
24. The method of claim 22, wherein said acetyl-coa derived compound is poly-3-hydroxybutyrate.
25. The method of claim 22, wherein the reaction of preparation is carried out by a microorganism.
26. Use of an aldolase, transaldolase or an isozyme or a mutant thereof, or a microorganism expressing an aldolase, transaldolase or an isozyme or a mutant thereof, for the preparation of arabinose-5-phosphate, acetyl-coa derived compounds.
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