CN106399135A - Protein high-yielding Saccharomyces cerevisiae C20140911, and breeding and culturing method and application thereof - Google Patents
Protein high-yielding Saccharomyces cerevisiae C20140911, and breeding and culturing method and application thereof Download PDFInfo
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Abstract
本发明公开了一株高产蛋白酵母菌株(Saccharomyces cerevisiae) C20140911及其筛选方法及应用,并提供了其选育、培养方法和应用。本发明的有益效果为:本发明公开的酵母菌株其发酵液蛋白质含量和种类远高于出发菌,从该菌株发酵液中共鉴定到肽段241个,蛋白质组121个;分别比出发菌提高了254.4%和157.4%;该菌株发酵液不仅蛋白含量高,且参与的代谢通路也多,参与较多的碳水化合物代谢及能量代谢;具有唯一具有电子载体活性和转运子活性的蛋白质,可能行使着生物调控、刺激反应和定位进程等功能,该发明的菌株发酵液中蛋白功能和参与的代谢途径远多于出发菌,本发明的菌株可用于制备饲料添加剂及微生态制剂,提高动物生产性能,降低断奶仔猪腹泻,效果优于出发菌。The invention discloses a high-yield protein yeast strain (Saccharomyces cerevisiae) C20140911 and its screening method and application, and provides its breeding, cultivation method and application. The beneficial effects of the present invention are as follows: the protein content and type of the fermentation liquid of the yeast strain disclosed in the present invention are much higher than that of the starting bacteria, and a total of 241 peptides and 121 proteomes were identified from the fermentation liquid of the strain; 254.4% and 157.4%; the fermentation liquid of this strain not only has high protein content, but also participates in many metabolic pathways, and participates in more carbohydrate metabolism and energy metabolism; it has the only protein with electron carrier activity and transporter activity, which may exercise Functions such as biological regulation, stimulus response and positioning process, the protein function and involved metabolic pathways in the fermentation liquid of the bacterial strain of the invention are far more than those of the original bacteria, the bacterial strain of the present invention can be used to prepare feed additives and microecological preparations, improve animal production performance, The effect of reducing diarrhea in weaned piglets is better than that of starting bacteria.
Description
技术领域technical field
本发明涉及动物饲料添加剂技术领域,具体涉及一株高产蛋白酵母菌株酿酒酵母(Saccharomyces cerevisiae)C20140911及其选育、培养方法和应用。The invention relates to the technical field of animal feed additives, in particular to a high-yielding yeast strain Saccharomyces cerevisiae (Saccharomyces cerevisiae) C20140911 and its selection, cultivation method and application.
背景技术Background technique
酵母菌是一种真核单细胞微生物,具有典型的细胞结构,有细胞核、胞浆膜、细胞壁、细胞浆及其它内含物等。因酵母富含优质蛋白质、氨基酸、完整的B族维生素、以生命结合态形式存在的多种矿物质和功能膳食纤维,广泛应用于生产实际。酵母是人类应用比较早的,也是应用最为广泛的微生物,人们经常利用它的发酵作用制造各种发面食品和酿酒,如啤酒酵母应用于啤酒生产;富硒、富锌酵母作为有机微量元素的载体,使微量元素更易吸收等;在畜牧业中酵母主要作为单细胞蛋白在饲料中添加,以减少其它蛋白原料的使用。同时,也有将酵母培养物(Yeast Culture,YC)作为微生态制剂的研究报道。酵母培养物是一种酵母培养的产品,是指经过严格控制条件的发酵后连同培养基一起加工制得的产品,其中的主要成分是培养基、酵母菌以及酵母菌的代谢产物。酵母代谢产物中蛋白质含量很少,但它含有其它“未知促生长因子”,用来调节动物肠道的微生态平衡,提高饲料的利用率,增加抗病力及抗应激能力,促进生长,从而提高动物的生产性能。酵母培养物在畜牧业的应用,有许多优点,因为它既不会干扰抗生素的作用,同时可以减少抗生素的使用,在呼唤食品安全,限制抗生素使用的今天,酵母产品将有更广阔的应用前景。Yeast is a eukaryotic unicellular microorganism with a typical cell structure, including nucleus, cytoplasmic membrane, cell wall, cytoplasm and other inclusions. Yeast is widely used in production because it is rich in high-quality protein, amino acids, complete B vitamins, various minerals in the form of life-combined forms, and functional dietary fiber. Yeast is the earliest and most widely used microbe used by humans. People often use its fermentation function to make various dough foods and brew wine. For example, beer yeast is used in beer production; selenium-rich and zinc-rich yeast are used as organic trace elements Carrier, making trace elements easier to absorb, etc.; in animal husbandry, yeast is mainly added to feed as single-cell protein to reduce the use of other protein raw materials. At the same time, there are also research reports on the use of yeast culture (Yeast Culture, YC) as a probiotic. Yeast culture is a product of yeast culture, which refers to the product processed together with the medium after fermentation under strictly controlled conditions. The main components are medium, yeast and yeast metabolites. The protein content in yeast metabolites is very small, but it contains other "unknown growth-promoting factors", which are used to regulate the micro-ecological balance of the intestinal tract of animals, improve feed utilization, increase disease resistance and stress resistance, and promote growth. Thereby improving animal performance. The application of yeast culture in animal husbandry has many advantages, because it will not interfere with the action of antibiotics, and at the same time can reduce the use of antibiotics. Today, when food safety is called for and the use of antibiotics is restricted, yeast products will have a broader application prospect .
发明内容Contents of the invention
本发明的目的就是针对上述现有技术中的缺陷,为了提高菌株产蛋白水平,用以制备更好的微生态制剂及饲料添加剂,以期增强其临床使用效果,为食品安全及畜牧业生产服务,提供了一株高产蛋白酵母菌株酿酒酵母(Saccharomyces cerevisiae)C20140911及其选育、培养方法和应用。The purpose of the present invention is to address the defects in the above-mentioned prior art, in order to improve the protein production level of bacterial strains, to prepare better microecological preparations and feed additives, in order to enhance its clinical use effect, and serve food safety and animal husbandry production. Provided is a high-yield protein yeast strain Saccharomyces cerevisiae C20140911 and its selection, cultivation methods and applications.
为了实现上述目的,本发明提供的技术方案为:一株高产蛋白酵母菌株酿酒酵母(Saccharomyces cerevisiae)C20140911,其在中国微生物菌种保藏管理委员会普通微生物中心的保藏编号为CGMCC No.9675,保藏时间为2014年9月18日。In order to achieve the above object, the technical solution provided by the present invention is: a high-yield protein yeast strain Saccharomyces cerevisiae (Saccharomyces cerevisiae) C20140911, its preservation number in the General Microbiology Center of China Microbiological Culture Collection Management Committee is CGMCC No.9675, and the preservation time is for September 18, 2014.
上述的高生物量的富蛋白酵母菌株是在原有啤酒酵母菌Saccharomycescerevisia的基础上经过长期驯化所得。The above-mentioned protein-rich yeast strain with high biomass is obtained through long-term domestication on the basis of the original beer yeast Saccharomycescerevisia.
本发明的第二个目的是提供了上述一株高产蛋白酵母菌株(Saccharomycescerevisiae)C20140911的选育方法,所述选育方法是以14g麦芽汁粉状培养基、1g蛋白胨、100ml双蒸水为培养基,将培养基高压灭菌,无菌环境调初始培养液pH为5.8,接入1ml初始出发菌培养液,温度为27.3℃,转速120r/min,振摇48-72H,恒温摇床培养,反复传代;从低剂量1%的蛋白胨开始,对酵母菌株(Saccharomyces cerevisiae)进行生长耐受驯化,逐步增加蛋白胨剂量至8%,经过多次复筛和传代试验,筛选出高产蛋白酵母菌株;The second object of the present invention is to provide a breeding method for the above-mentioned high-yield protein yeast strain (Saccharomycescerevisiae) C20140911, said breeding method is to use 14g wort powdery medium, 1g peptone, 100ml double distilled water as the medium , the culture medium is autoclaved, and the pH of the initial culture solution is adjusted to 5.8 in a sterile environment, and 1ml of the initial starting bacteria culture solution is inserted, the temperature is 27.3°C, the speed is 120r/min, shaken for 48-72H, and the constant temperature shaking table is cultivated repeatedly. Subculture: start with a low dose of 1% peptone, grow tolerance and domesticate yeast strains (Saccharomyces cerevisiae), gradually increase the peptone dose to 8%, and screen out high protein-producing yeast strains after multiple re-screening and passage tests;
本发明的第三个目的是提供了上述一株高产蛋白酵母菌株(Saccharomycescerevisiae)C20140911的培养方法,是将麦芽汁培养基14.0g,蛋白胨8g,双蒸水100ml,高压灭菌;无菌环境调初始培养液pH为5.8,接入种子菌1ml,在温度为27.3℃,转速120r/min,恒温摇床培养。The third object of the present invention is to provide a culture method for the above-mentioned high-yield protein yeast strain (Saccharomycescerevisiae) C20140911, which is 14.0g of wort medium, 8g of peptone, 100ml of double distilled water, and autoclaving; The pH of the initial culture solution was 5.8, 1ml of the seed bacteria was inserted, and the temperature was 27.3°C, the rotation speed was 120r/min, and the culture was carried out on a constant temperature shaker.
本发明的第四个目的是提供了上述一株高产蛋白酵母菌株(Saccharomycescerevisiae)C20140911在制备动物高蛋白饲料添加剂中的应用。The fourth object of the present invention is to provide the application of the above-mentioned high-yielding yeast strain (Saccharomycescerevisiae) C20140911 in the preparation of animal high-protein feed additives.
本发明公开的高产蛋白酵母菌株,其发酵液蛋白质含量和种类多高于原有出发菌株。The high-yield protein yeast strain disclosed by the invention has a higher protein content and type in the fermented liquid than the original starting strain.
本发明公开的高产蛋白酵母菌株发酵液蛋白含量为0.329mg/ml,比出发菌发酵液的0.304ml/mg提高了8.2%。The protein content of the fermented liquid of the high-yielding yeast strain disclosed by the invention is 0.329 mg/ml, which is 8.2% higher than the 0.304 ml/mg of the starting bacterium fermented liquid.
本发明所述高产蛋白酵母菌株发酵液中共鉴定到肽段241个,蛋白组121个;原有出发菌株发酵液共鉴定到肽段68个,蛋白组47个,分别高出254.4%和157.4%。A total of 241 peptides and 121 protein groups were identified in the fermentation liquid of the high-yielding yeast strain of the present invention; a total of 68 peptides and 47 protein groups were identified in the fermentation liquid of the original starting strain, which were 254.4% and 157.4% higher than .
本发明质谱鉴定到有注释的蛋白共计109个,所述高产蛋白酵母菌株发酵液中已鉴定出特有蛋白63个,出发菌特有蛋白11个,接近出发菌的6倍;与出发菌共有蛋白35个。A total of 109 annotated proteins were identified by the mass spectrometry of the present invention. 63 unique proteins have been identified in the fermentation broth of the high-yielding yeast strain, and 11 proteins are unique to the starting bacteria, which is nearly 6 times that of the starting bacteria; 35 proteins are shared with the starting bacteria. indivual.
本发明公开的一株高产蛋白酵母菌株发酵液不仅蛋白含量高,蛋白功能和参与的代谢途径远多于出发菌。参与较多的碳水化合物代谢及能量代谢,具有唯一具有电子载体活性和转运子活性的蛋白质,可能行使着生物调控、刺激反应和定位进程等功能。The fermented liquid of a high-yielding yeast strain disclosed by the invention not only has high protein content, but also has far more protein functions and involved metabolic pathways than the starting bacteria. It is involved in more carbohydrate metabolism and energy metabolism, and it is the only protein with electron carrier activity and transporter activity, which may perform functions such as biological regulation, stimulus response and localization process.
本发明特有蛋白WEGO功能注释聚类分析表明,所述高产蛋白酵母菌株发酵液中63种特有蛋白,参与生物进程(biological progress)的蛋白共105条注释,参与分子功能(molecular function)的蛋白注释77种,细胞学组分(Cellular component)的蛋白注释41种。原有菌株发酵液11种中的特有蛋白,参与生物进程(biological progress)的蛋白共12条注释,参与分子功能(molecular function)的蛋白注释7种,细胞学组分(Cellularcomponent)的蛋白注释5种。The WEGO functional annotation clustering analysis of the specific proteins of the present invention shows that there are 63 specific proteins in the fermentation broth of the high-yielding yeast strain, 105 annotations of proteins involved in biological progress, and annotations of proteins involved in molecular functions (molecular function) 77 kinds, 41 kinds of protein annotations of cellular components. There are 12 unique proteins in the fermentation broth of the original strain, 12 annotations of proteins involved in biological progress, 7 annotations of proteins involved in molecular function, and 5 annotations of proteins in cellular components kind.
本发明特有蛋白GO功能注释表明,所述高产蛋白酵母菌株发酵液的特有蛋白中,生物进程(Biological Process)分类中主要参与有细胞过程(cellular process)的蛋白注释有33种,参与代谢过程(metabolic process)蛋白注释有32种,单一生物过程(single-organism process)有10种蛋白注释,细胞生物合成的(cellular componentorganization or biogenesis)有8种,其余的参与有定位(localization)5种、应激反应(response to stimulus)2种、生物调节(biogical regulation)6种等。参与分子功能(Molecular Function)的主要有催化活性(catalytic activity)蛋白注释30种,结合蛋白(binding)注释27种,分子结构蛋白(structural molecule)注释6种,其余有转运蛋白(transporter)3种、具有转录因子活性的结合蛋白(protein binding transcriptionfactor activity)1种、具有转录活性的核酸(nucleic acid binding transcriptionfactor activity)1种等注释;以及抗氧化活性(ntioxidant activity)注释1种,电子载体活性(electron carrier activity)1种。参与Cellular Component分类中注释蛋白有细胞(cell)的18种,细胞器(organelle)9种,大分子化合物(macromolecular complex)9种,胞外区(extracellular region)4种,细胞膜(membrane)4种,膜封闭腔(membrane-enclosedlumen)1种。The GO function annotation of the specific protein of the present invention shows that among the specific proteins of the fermentation broth of the high-yielding yeast strain, there are 33 protein annotations mainly involved in the cellular process (cellular process) in the classification of the biological process (Biological Process), and participate in the metabolic process ( There are 32 annotations for metabolic process proteins, 10 annotations for single-organism processes, 8 annotations for cellular component organization or biogenesis, and 5 annotations for the rest involved in localization. There are 2 types of response to stimulus, 6 types of biological regulation, etc. Participating in molecular function (Molecular Function) mainly includes 30 annotations of catalytic activity proteins, 27 annotations of binding proteins, 6 annotations of structural molecules, and 3 types of transporters in the rest , 1 protein binding transcription factor activity with transcription factor activity, 1 nucleic acid binding transcription factor activity with transcription activity, etc.; and 1 antioxidant activity (ntioxidant activity) annotation, electron carrier activity ( electron carrier activity) 1 type. Annotated proteins participating in the Cellular Component classification include 18 types of cells, 9 types of organelles, 9 types of macromolecular complexes, 4 types of extracellular regions, and 4 types of membranes. One type of membrane-enclosed lumen.
出发菌株发酵液特有蛋白中,生物进程(Biological Process)分类中主要参与代谢过程(metabolic process)的有8种蛋白注释,单一生物过程(single-organismprocess)有5种蛋白注释,细胞过程(cellular process)的蛋白注释有4种,其余有参与应激反应(response to stimulus)的2种、定位(localization)的1种、细胞的生物合成(cellular component organization or biogenesis)的1种等。分子功能(MolecularFunction)分类中注释蛋白主要有参与催化活性(catalytic activity)6种,结合蛋白(binding)6种,转运活性(transporter activity)1种。细胞组成(Cellular Component)分类中注释蛋白有参与细胞(cell)组成的2种,细胞器(organelle)组成的1种,大分子化合物(macromolecular complex)组成的1种,胞外区(extracellular region)组成1种,细胞膜(membrane)组成的4种。Among the proteins unique to the fermentation broth of the starting strain, there are 8 protein annotations in the Biological Process category that are mainly involved in the metabolic process, 5 protein annotations for the single-organism process, and 5 protein annotations for the cellular process (cellular process). ), there are 4 types of protein annotations, and the rest include 2 types involved in response to stimulus, 1 type in localization, and 1 type in cellular component organization or biogenesis, etc. In the category of Molecular Function, there are 6 kinds of annotated proteins involved in catalytic activity (catalytic activity), 6 kinds of binding protein (binding), and 1 kind of transport activity (transporter activity). In the classification of Cellular Component, there are 2 types of annotated proteins involved in the composition of cells, 1 type composed of organelles, 1 type composed of macromolecular complexes, and 1 type composed of extracellular regions. 1 type, 4 types of cell membrane (membrane) composition.
本发明KEGG通路注释表明,所述高产蛋白酵母菌株发酵液特有蛋白在KEGG数据库中进行比对分析后,得到其中一些匹配蛋白的代谢途径,剩余蛋白因研究有限,还无法找到其匹配的信息,匹配蛋白共参与24条代谢途径:分别为嘌呤代谢(Purine metabolism)4种,糖酵解(Glycolysis/Gluconeogenesis)4种,光合固碳作用(Carbon fixation inphotosynthenic organisms)2种,氮代谢(Nitrogen metabolism)2种,丙氨酸,天门冬氨酸和谷氨酸代谢(Alanine,asparatate and glutamate metabolism)2种,原核固碳作用(Carbon fixation pathways in prokaryotes)2种,丙酮酸代谢(Pyruvate metabolism)1种,磷酸肌醇代谢(inositol phosphate metabolism)1种,泛酸盐和CoA生物合成(Pantothenate and CoA biosynthesis)1种,乙醛酸盐和二羧酸途径(Glyoxylate anddicarboxylate metabolism)1种,柠檬酸盐循环(Citrate cycle(TCA cycle)1种,缬氨酸,亮氨酸和异亮氨酸的生物合成(Valine,leucine and isoleucine biosynthesis)1种,甘氨酸,丝氨酸和苏氨酸代谢(Glycine,serine and threonine metabolism)1种,氨基糖和核苷酸糖代谢(Amino sugar and nucleotide sugar metabolism)1种,半胱氨酸和蛋氨酸代谢(Cysteine and methionine metabolism)1种,细胞色素P450药物代谢(Drugmetabolism-cytochrome P450)1种,果糖和甘露糖代谢(Fructose and mannosemetabolism)1种,精氨酸和脯氨酸代谢(Arginine and proline metabolism)1种,细胞色素P450外源性化学物质代谢(Metabolism of xenobiotics by cytochrome P450)1种,萘降解(Naphthalene degradation)1种,氯代烷和氯烯烃的降解(Chloroalkane andchloroalkene degradation)1种,脂肪酸降解(Fatty acid degradation)1种,酪氨酸代谢(Tyrosine metabolism)1种,维生素A代谢(Retinol metabolism)1种。The KEGG pathway annotation of the present invention shows that the metabolic pathways of some of the matching proteins are obtained after comparison and analysis of the specific proteins of the fermentation broth of the high-yielding yeast strains in the KEGG database, and the matching information of the remaining proteins cannot be found due to limited research. The matching proteins participated in 24 metabolic pathways: 4 kinds of purine metabolism (Purine metabolism), 4 kinds of glycolysis (Glycolysis/Gluconeogenesis), 2 kinds of photosynthetic carbon fixation (Carbon fixation in photosynthetic organsisms), nitrogen metabolism (Nitrogen metabolism) 2 types, 2 types of alanine, asparatate and glutamate metabolism (Alanine, asparatate and glutamate metabolism), 2 types of prokaryotic carbon fixation (Carbon fixation pathways in prokaryotes), 1 type of pyruvate metabolism (Pyruvate metabolism) ,1 inositol phosphate metabolism,1 pantothenate and CoA biosynthesis,1 glyoxylate and dicarboxylate metabolism,citrate cycle (Citrate cycle (TCA cycle) 1 species, valine, leucine and isoleucine biosynthesis (Valine, leucine and isoleucine biosynthesis) 1 species, glycine, serine and threonine metabolism (Glycine, serine and threonine Metabolism) 1 species, amino sugar and nucleotide sugar metabolism (Amino sugar and nucleotide sugar metabolism) 1 species, cysteine and methionine metabolism (Cysteine and methionine metabolism) 1 species, cytochrome P450 drug metabolism (Drugmetabolism-cytochrome P450 ) 1 type, Fructose and mannose metabolism (Fructose and mannose metabolism) 1 type, arginine and proline metabolism (Arginine and proline metabolism) 1 type, cytochrome P450 exogenous chemical substance metabolism (Metabolism of xenobiotics by cytochrome P450 ) 1 species, naphthalene degradation (Napht halene degradation) 1 type, chloroalkane and chloroalkene degradation (Chloroalkane and chloroalkene degradation) 1 type, fatty acid degradation (Fatty acid degradation) 1 type, tyrosine metabolism (Tyrosine metabolism) 1 type, vitamin A metabolism (Retinol metabolism) 1 species.
原有菌株发酵液特有蛋白信息在KEGG数据库中进行比对分析,共参与8条代谢途径:其中果糖甘露糖代谢(Fructose and mannose metabolism)1种,嘌呤代谢(Purinemetabolism)1种,糖酵解(Glycolysis/Gluconeogenesis)1种,核黄素代谢(Riboflavinmetabolism)1种,甲烷代谢(Methane metabolism)1种,戊糖磷酸途径(Pentose phosphatepathway)1种,氨基苯甲酸降解(Aminobenzoate degradation)1种,光合固碳作用(Carbonfixation in photosynthenic organisms)1种)。The unique protein information of the fermentation broth of the original strain was compared and analyzed in the KEGG database, and a total of 8 metabolic pathways were involved: 1 kind of fructose and mannose metabolism (Fructose and mannose metabolism), 1 kind of purine metabolism (Purine metabolism), glycolysis ( Glycolysis/Gluconeogenesis) 1 species, riboflavin metabolism (Riboflavin metabolism) 1 species, methane metabolism (Methane metabolism) 1 species, pentose phosphate pathway (Pentose phosphate pathway) 1 species, aminobenzoate degradation (Aminobenzoate degradation) 1 species, photosynthetic solid Carbon effect (Carbonfixation in photosynthenic organisms) 1 kind).
本发明的有益效果为:本发明公开的酵母菌株其发酵液蛋白质含量和种类远高于出发菌。该菌株发酵液中蛋白质含量为0.329mg/ml,比出发菌发酵液的0.304ml/mg提高了8.2%。从该菌株发酵液中共鉴定到肽段241个,蛋白质组121个;出发菌发酵液共鉴定到肽段68个,蛋白质组47个,分别比出发菌提高了254.4%和157.4%。已鉴定出的蛋白中该菌发酵液特有蛋白63个,出发菌特有蛋白11个,与出发菌共有蛋白35个。该菌株发酵液不仅蛋白含量高,且参与的代谢通路也多,参与较多的碳水化合物代谢及能量代谢;具有唯一具有电子载体活性和转运子活性的蛋白质,可能行使着生物调控、刺激反应和定位进程等功能。该发明的菌株发酵液中蛋白功能和参与的代谢途径远多于出发菌。本发明的菌株可用于制备饲料添加剂及微生态制剂,提高动物生产性能,降低断奶仔猪腹泻,效果优于出发菌。The beneficial effects of the present invention are: the protein content and type of the fermented liquid of the yeast strain disclosed by the present invention are much higher than those of the starting bacteria. The protein content in the fermented liquid of the bacterial strain is 0.329 mg/ml, which is 8.2% higher than the 0.304 ml/mg of the fermented liquid of the starting bacterium. A total of 241 peptides and 121 proteomes were identified from the fermentation broth of the strain; 68 peptides and 47 proteomes were identified in the fermentation broth of the original strain, which were 254.4% and 157.4% higher than the original strain, respectively. Among the identified proteins, there are 63 unique proteins in the fermentation broth of the bacterium, 11 proteins unique to the starting bacterium, and 35 proteins shared with the starting bacterium. The fermentation liquid of this strain not only has high protein content, but also participates in many metabolic pathways, and participates in more carbohydrate metabolism and energy metabolism; it has the only protein with electron carrier activity and transporter activity, which may exercise biological regulation, stimulation response and Positioning process and other functions. The protein functions and involved metabolic pathways in the bacterial strain fermentation liquid of the invention are far more than those of the starting bacteria. The bacterial strain of the invention can be used to prepare feed additives and microecological preparations, improve animal production performance, and reduce diarrhea of weaned piglets, and the effect is better than that of the original bacteria.
附图说明Description of drawings
图1为分子生物学鉴定中的凝胶电泳图。Figure 1 is a gel electrophoresis image in molecular biology identification.
图2为ESI质谱鉴定的色谱图结果。Fig. 2 is the chromatogram result identified by ESI mass spectrometry.
其中,上图为原有出发菌株发酵液色谱图,下图为本发明菌株发酵液色谱图。Among them, the upper figure is the chromatogram of the fermentation liquid of the original starting strain, and the lower figure is the chromatogram of the fermentation liquid of the strain of the present invention.
图3为共有蛋白组WEGO功能注释聚类分析图。Figure 3 is a cluster analysis diagram of the consensus protein group WEGO functional annotation.
图4为共有组蛋白GO功能注释中的Biological Progress分类图。Figure 4 is a classification map of Biological Progress in the consensus histone GO functional annotation.
图5为共有组蛋白GO功能注释中的Molecular Function分类图。Figure 5 is the Molecular Function classification map in the consensus histone GO functional annotation.
图6为共有组蛋白GO功能注释中的Cell Component分类图。Figure 6 is a classification diagram of Cell Component in the consensus histone GO functional annotation.
图7为特有蛋白组WEGO功能注释聚类分析图。Figure 7 is a cluster analysis diagram of the WEGO functional annotation of the unique proteome.
图8为特有蛋白GO功能注释中的Biological Progress分类图。Figure 8 is a classification map of Biological Progress in the GO functional annotation of specific proteins.
图9为特有蛋白GO功能注释中的Molecular Function分类图。Figure 9 is the Molecular Function classification map in the GO functional annotation of specific proteins.
图10为特有蛋白GO功能注释中的Cell Component分类图。Figure 10 is a classification diagram of Cell Component in the GO functional annotation of specific proteins.
具体实施方式detailed description
实施例1:Example 1:
培养选育方法Breeding method
1、一株富蛋白酵母菌株(Saccharomyces cerevisiae)C20140911,其在中国微生物菌种保藏管理委员会普通微生物中心的保藏编号为CGMCC No.9675,保藏日期为2014年9月18日。1. A strain of protein-rich yeast (Saccharomyces cerevisiae) C20140911, its preservation number in the General Microbiology Center of China Microbiological Culture Collection Management Committee is CGMCC No.9675, and the preservation date is September 18, 2014.
上述的高生物量的富蛋白酵母菌株是在原有啤酒酵母菌Saccharomycescerevisia的基础上经过长期驯化所得。The above-mentioned protein-rich yeast strain with high biomass is obtained through long-term domestication on the basis of the original beer yeast Saccharomycescerevisia.
上述高蛋白菌株的选育方法,是以14.0g麦芽汁粉状培养基、1g蛋白胨、100ml双蒸水为培养基(高压灭菌,无菌环境调初始培养液pH为5.8),接入1ml初始出发菌培养液,恒温摇床培养,温度为27.3℃,转速120r/min,振摇48-72H,反复传代。The breeding method of the above-mentioned high-protein strains is to use 14.0g of wort powdery medium, 1g of peptone, and 100ml of double distilled water as the medium (autoclaved, the pH of the initial culture solution is adjusted to 5.8 in a sterile environment), and 1ml of the initial The starting bacterial culture solution was cultured on a constant temperature shaker at a temperature of 27.3°C, a rotation speed of 120r/min, shaking for 48-72H, and repeated passage.
为培养驯化出产高蛋白的菌株,从低剂量1%的蛋白胨开始,对酵母菌株Saccharomyces cerevisiae进行生长耐受驯化,逐步增加蛋白胨剂量至8%,经过多次复筛和传代试验,筛选出高生物量富蛋白酵母菌株。In order to cultivate and domesticate high-protein strains, starting from a low dose of 1% peptone, the yeast strain Saccharomyces cerevisiae was acclimatized for growth and tolerance, and gradually increased the peptone dose to 8%. Quantitative protein-rich yeast strains.
培养条件:麦芽汁培养基(14g),蛋白胨(8g),双蒸水(100ml),高压灭菌;无菌环境调初始培养液pH为5.8,恒温摇床培养:温度为27.3℃,转速120r/min。Culture conditions: Wort medium (14g), peptone (8g), double distilled water (100ml), autoclaved; aseptic environment to adjust the pH of the initial culture solution to 5.8, constant temperature shaker culture: temperature 27.3 ℃, speed 120r /min.
检测存活条件:恒温培养72h,用生理盐水稀释10倍后,用血细胞计数板检测活菌数目,可达到108/ml。Detection of survival conditions: culture at constant temperature for 72 hours, dilute 10 times with normal saline, and use a hemocytometer to detect the number of viable bacteria, which can reach 10 8 /ml.
该培养物中菌种为啤酒工业生产菌种,不是动植物病原;培养基中麦芽汁、蛋白胨都无毒无害,不会污染环境。The bacteria in the culture are produced in the beer industry and are not animal or plant pathogens; the wort and peptone in the culture medium are non-toxic and harmless, and will not pollute the environment.
上述一株富蛋白酵母菌株(Saccharomyces cerevisiae)C20140911主要应用在制备动物高蛋白饲料添加剂中。(可否对此部分进行详细描述,如何添加,添加量为多少,能带来何种有益效果灯)The above-mentioned protein-rich yeast strain (Saccharomyces cerevisiae) C20140911 is mainly used in the preparation of animal high-protein feed additives. (Can you describe this part in detail, how to add it, how much to add, and what beneficial effects it can bring)
实施例2:菌种的鉴定Embodiment 2: the identification of strain
1.形态学鉴定:1. Morphological identification:
在麦芽汁琼脂培养基上菌落为乳白色,形态为圆形,边缘整齐,有光泽,平坦;显微镜观察时,菌株细胞多呈椭圆形或长卵形,细胞为芽殖,不形成菌丝,无掷孢子和子囊子孢子。On the malt juice agar medium, the colonies are milky white, round in shape, with neat edges, shiny, and flat; when observed under a microscope, the cells of the strain are mostly oval or long oval, and the cells are budding, without hyphae, and without Throw spores and ascospores.
2.生理生化鉴定:2. Physiological and biochemical identification:
试验方法:菌悬液法:取一内盛2ml无菌水试管,用接种针从平板上挑取已纯化单个菌落至无菌水中稀释制成0.5麦氏浊度的均一细菌悬液,滴入需要试验的微量生化鉴定管中,每管1滴。(注:如内容物为半固体或斜面,则进行穿刺接种)Test method: Bacterial suspension method: take a test tube containing 2ml of sterile water, use an inoculation needle to pick a single colony that has been purified from the plate, and dilute it into sterile water to make a uniform bacterial suspension with a McFarland turbidity of 0.5, drop it into 1 drop in each micro-biochemical identification tube that needs to be tested. (Note: If the content is semi-solid or inclined, perform puncture inoculation)
试验结果:test results:
发酵试验,发酵葡萄糖、半乳糖、蔗糖、麦芽糖、和棉子糖;不发酵:乳糖、木糖、纤维二糖和海藻糖。Fermentation test, fermentation of glucose, galactose, sucrose, maltose, and raffinose; non-fermentation of: lactose, xylose, cellobiose, and trehalose.
碳同化试验,同化:葡萄糖、麦芽糖、蔗糖、半乳糖和甘露糖;不同化:纤维二糖、D-木糖、密二糖、海藻糖和L-阿拉伯糖。Carbon assimilation test, assimilation: glucose, maltose, sucrose, galactose and mannose; dissimilation: cellobiose, D-xylose, melibiose, trehalose and L-arabinose.
氮同化试验,同化:(NH4)2SO4;不同化:KNO3。Nitrogen assimilation test, assimilation: (NH 4 ) 2 SO 4 ; assimilation: KNO 3 .
醇类同化试验,同化:乙醇;不同化:山梨醇。Alcohol assimilation test, assimilation: ethanol; dissimilation: sorbitol.
上述实验结果表明,该菌株为酵母菌。The above experimental results showed that the strain was yeast.
3.分子生物学鉴定:3. Molecular biological identification:
3.1 试验方法:菌液培养——DNA提取——PCR——电泳——测序——NCBI blast比对。3.1 Test method: Bacteria culture—DNA extraction—PCR—electrophoresis—sequencing—NCBI blast comparison.
①菌液培养:挑取斜面上酵母保存株,加入事先准备的液体麦芽汁培养基5ml中,摇床23℃培养48h,备用。① Bacterial liquid culture: Pick the preserved yeast strain on the slope, add it to 5ml of the liquid wort medium prepared in advance, and culture it on a shaking table at 23°C for 48 hours, and set it aside.
②DNA提取:OMEGA BIO-TEK试剂盒步骤进行提取。② DNA extraction: OMEGA BIO-TEK kit steps for extraction.
③PCR:引物制备:正向引物NL-1:5'-GCATAT CAA TAA GCG GAG GAAAAG-3',反向引物NL-4:5'-GGT CCGTGTTTCAAGACGG-3',由上海生工制备。③PCR: Primer preparation: forward primer NL-1:5'-GCATAT CAA TAA GCG GAG GAAAAG-3', reverse primer NL-4:5'-GGT CCGTGTTTCAAGACGG-3', prepared by Shanghai Sangong.
反应体系25μL:2×Taq Master Mix12.50μL,NL-1 1.00μL,NL-4 1.00μL,DNA模板l.00μL,ddH20 9.50μL,TOTAL25.00μL。Reaction system 25 μL: 2×Taq Master Mix 12.50 μL, NL-1 1.00 μL, NL-4 1.00 μL, DNA template 1.00 μL, ddH 2 0 9.50 μL, TOTAL 25.00 μL.
反应条件(35cycles):预变性:94℃,4min;变性:94℃,30s;复性:58℃,30s;T1:72℃,45s;T2:72℃,l0min;保存:15℃,∞。Reaction conditions (35cycles): pre-denaturation: 94°C, 4min; denaturation: 94°C, 30s; refolding: 58°C, 30s; T1: 72°C, 45s; T2: 72°C, 10min; storage: 15°C, ∞.
④电泳条件:1.4%的琼脂糖凝胶进行电泳,点样:6×Loading Buffer(点样缓冲液)2.5μL,DNA5μL,电泳:点样后设定电泳条件为电压150V 25min。④ Electrophoresis conditions: 1.4% agarose gel for electrophoresis, spotting: 2.5 μL of 6×Loading Buffer (sampling buffer), 5 μL of DNA, electrophoresis: after spotting, set the electrophoresis condition to voltage 150V for 25 minutes.
⑤电泳条带较亮产物送至上海生工测序部进行测序。⑤The products with brighter electrophoresis bands were sent to Shanghai Sangon Sequencing Department for sequencing.
⑥将测序结果输入www.NCBI.nlm.nih.gov,利用BLAST软件,将测得的基因序列与Genbank数据库的序列进行同源性比较。⑥Enter the sequencing results into www.NCBI.nlm.nih.gov, and use BLAST software to compare the homology between the measured gene sequence and the sequence in the Genbank database.
3.2 试验结果:3.2 Test results:
①电泳图如图1所示。(长度约600bp,1,2为酵母原始菌株,3,4为驯化富蛋白酵母菌株)① The electrophoresis diagram is shown in Figure 1. (about 600bp in length, 1, 2 are original yeast strains, 3, 4 are domesticated protein-rich yeast strains)
②BLAST对比结果:Saccharomyces cerevisiae S288c,NC_001144.5,chromosomeXII.② BLAST comparison results: Saccharomyces cerevisiae S288c, NC_001144.5, chromosomeXII.
上述实验结果表明:该发明所提供的菌株为酵母菌株。The above-mentioned experimental results show that: the bacterial strain provided by the invention is a yeast strain.
实施例3:菌株蛋白含量测定Embodiment 3: Determination of strain protein content
1.试验方法:1. Test method:
样品1组:原始出发酵母菌株发酵液样品;2组:高产蛋白酵母菌株发酵液。Sample group 1: fermentation liquid samples of original starting yeast strains; group 2: fermentation liquid samples of high protein-producing yeast strains.
1.1 样品处理及SDS-PAGE:1.1 Sample processing and SDS-PAGE:
将酵母发酵液100ml经3000rpm离心10min,取上清,再经7830rpm,4℃离心30min后取15ml样品,3KDa过夜透析,透析液为100mM碳酸氢铵溶液。透析后样品用3KDa超滤管,7830rpm,4℃超滤至体积小于2ml。Bradford法测定浓度,取20μl进行SDS-PAGE电泳,考马斯亮蓝染色。Centrifuge 100ml of yeast fermentation broth at 3000rpm for 10min, take the supernatant, then centrifuge at 7830rpm at 4°C for 30min, take 15ml sample, dialyze overnight at 3KDa, and the dialysate is 100mM ammonium bicarbonate solution. After dialysis, the sample was ultrafiltered with a 3KDa ultrafiltration tube at 7830 rpm at 4°C until the volume was less than 2ml. The concentration was determined by Bradford method, 20 μl was taken for SDS-PAGE electrophoresis, and Coomassie brilliant blue staining.
1.2 溶液内酶解:1.2 Enzymatic hydrolysis in solution:
每组取50μl样品,加入DTT至终浓度为10mM。加入IAA至终浓度为50mM,避光反应30min。加入LysC 37℃反应3小时。加入4倍体积25mM碳酸氢铵溶液。加入4μg Trypin 37℃过夜反应,0.1%TFA酸化终止反应。C18-SD Extraction Disk Cartridge脱盐处理,真空冻干。加35μl 0.1%FA复溶沉淀。Take 50 μl samples from each group and add DTT to a final concentration of 10 mM. Add IAA to a final concentration of 50 mM, and react in the dark for 30 min. Add LysC and react at 37°C for 3 hours. Add 4 volumes of 25 mM ammonium bicarbonate solution. Add 4 μg Trypin to react overnight at 37°C, and acidify with 0.1% TFA to terminate the reaction. C18-SD Extraction Disk Cartridge desalted, vacuum freeze-dried. Add 35 μl 0.1% FA to re-dissolve the pellet.
1.3 毛细管高效液相色谱:1.3 Capillary high performance liquid chromatography:
采用纳升流速HPLC液相系统Easy nLC进行分离。缓冲液:A液为0.1%甲酸水溶液,B液为0.1%甲酸乙腈水溶液(乙腈为84%)。色谱柱以95%的A液平衡。样品由自动进样器上样到上样柱Thermo scientific EASY column(2cm*100μm 5μm-C18),再经分析柱Thermoscientific EASY column(75μm*100mm 3μm-C18)分离,流速为300nl/min。相关液相梯度如下:0分钟-50分钟,B液线性梯度从0%到50%;50分钟-54分钟,B液线性梯度从50%到100%;54分钟-60分钟,B液维持在100%。The nanoliter flow rate HPLC liquid phase system Easy nLC was used for separation. Buffer solution: solution A is 0.1% formic acid aqueous solution, and solution B is 0.1% formic acid acetonitrile aqueous solution (acetonitrile is 84%). The chromatographic column is equilibrated with 95% liquid A. The sample is loaded from the autosampler to the loading column Thermo scientific EASY column (2cm*100μm 5μm-C18), and then separated by the analytical column Thermoscientific EASY column (75μm*100mm 3μm-C18) at a flow rate of 300nl/min. The relevant liquid phase gradient is as follows: from 0 minutes to 50 minutes, the linear gradient of B solution is from 0% to 50%; from 50 minutes to 54 minutes, the linear gradient of B solution is from 50% to 100%; from 54 minutes to 60 minutes, the B solution is maintained at 100%.
1.4 ESI质谱鉴定:1.4 ESI mass spectrometry identification:
样品经毛细管高效液相色谱分离后用Q-Exactive质谱仪(ThermoFinnigan)进行质谱分析。分析时长:60min,检测方式:正离子,母离子扫描范围:300-1800m/z,一级质谱分辨率:70,000at m/z 200,AGC target:3e6,一级Maximum IT:10ms,Number of scanranges:1,Dynamic exclusion:3.0s。多肽和多肽的碎片的质量电荷比按照下列方法采集:每次全扫描(full scan)后采集10个碎片图谱(MS2scan),MS2Activation Type:HCD,Isolation window:2m/z,二级质谱分辨率:17,500at m/z 200,Microscans:1,二级Maximum IT:60ms,Normalized collision energy:27eV,Underfill ratio:0.1%。The samples were separated by capillary high-performance liquid chromatography and then analyzed by Q-Exactive mass spectrometer (ThermoFinnigan). Analysis time: 60min, detection method: positive ion, precursor ion scanning range: 300-1800m/z, primary mass spectrometry resolution: 70,000at m/z 200, AGC target: 3e6, primary maximum IT: 10ms, Number of scanranges :1, Dynamic exclusion: 3.0s. The mass-to-charge ratio of polypeptides and polypeptide fragments is collected according to the following method: 10 fragment spectra (MS2scan) are collected after each full scan, MS2Activation Type: HCD, Isolation window: 2m/z, secondary mass spectrometry resolution: 17,500at m/z 200, Microscans: 1, secondary Maximum IT: 60ms, Normalized collision energy: 27eV, Underfill ratio: 0.1%.
1.5 质谱数据分析1.5 Mass spectrometry data analysis
原始文件(MGF文件)通过Mascot软件进行数据库检索。数据库为下载于uniprot的数据库uniprot_saccharomyces_112806_20141020.fasta(收录序列112806条,下载时间为2014-10-20)。搜库参数设定如下:enzyme为trypsin;missed cleavage设为2;静态修饰设定Carbamidomethy C;动态修饰设定Oxidation M。Peptides tolerance设为20ppm,ms/mstolerance设为0.1Da,Ion score>20。The original file (MGF file) was searched by Mascot software. The database is the database uniprot_saccharomyces_112806_20141020.fasta downloaded from uniprot (112806 sequences were included, and the download time was 2014-10-20). The search parameters were set as follows: enzyme was trypsin; missed cleavage was set to 2; static modification was set to Carbamidomethy C; dynamic modification was set to Oxidation M. Peptides tolerance is set to 20ppm, ms/mstolerance is set to 0.1Da, Ion score>20.
1.6 生物信息学分析1.6 Bioinformatics analysis
通过国际权威的数据库UniProt knowledgebase(Swiss-Prot/TrEMBL,www.expasy.org)和Gene Ontology(GO)Database(http://www.geneontology.org/)进行检索,初步探究鉴定到的差异表达蛋白的亚细胞定位情况、发挥的生物学功能和参与的细胞进程。Search through the internationally authoritative database UniProt knowledgebase (Swiss-Prot/TrEMBL, www.expasy.org) and Gene Ontology (GO) Database (http://www.geneontology.org/), and initially explore the identified differentially expressed proteins The subcellular localization, biological functions and cellular processes involved.
2.试验结果2. Test results
2.1 蛋白质定量结果:2.1 Protein quantitative results:
经SDS-PAGE电泳,证明两组发酵液中存在丰富的蛋白,样品蛋白质定量结果如表3-1所示。SDS-PAGE electrophoresis proved that there were abundant proteins in the fermentation broths of the two groups, and the quantitative results of the samples were shown in Table 3-1.
表3-1Table 3-1
2.2.2 ESI质谱鉴定结果:2.2.2 ESI mass spectrometry identification results:
样品蛋白质鉴定结果统计如表3-2所示。The statistics of the sample protein identification results are shown in Table 3-2.
表3-2Table 3-2
从图2的两幅色谱图中可以看出,两组样品的蛋白色谱吸收峰都较丰富,证明蛋白含量及种类较多,而通过比较分析可知,2组的蛋白吸收峰面积较1组大,吸收峰也较多,初步说明2组样品中的蛋白含量较丰富。From the two chromatograms in Figure 2, it can be seen that the protein chromatographic absorption peaks of the two groups of samples are richer, which proves that the protein content and types are more, and through comparative analysis, it can be seen that the protein absorption peak area of the 2 groups is larger than that of the 1 group , and there were more absorption peaks, preliminarily indicating that the protein content in the samples of the two groups was relatively rich.
2.3 生物信息学分析——GO分析及KEGG代谢通路初步分析:2.3 Bioinformatics analysis - GO analysis and preliminary analysis of KEGG metabolic pathways:
利用本地化序列比对软件NCBI BLAST+(ncbi-blast-2.2.28+-win32.ext)将鉴定到的蛋白质与NCBI nr数据库中的蛋白质序列进行比对。根据相似性原理,所得的同源蛋白的功能信息可以用于目标蛋白的功能注释。我们仅保留排名前10条且Evalue≤1e-3的比对序列进行后续的分析。所得的比对相似性范围为50-100%,其中大部分目标蛋白序列的比对相似性为98%或以上。The identified proteins were compared with the protein sequences in the NCBI nr database using the localized sequence alignment software NCBI BLAST+ (ncbi-blast-2.2.28+-win32.ext). According to the principle of similarity, the obtained functional information of homologous proteins can be used for functional annotation of target proteins. We only keep the top 10 aligned sequences with Evalue≤1e-3 for subsequent analysis. The resulting alignment similarities ranged from 50-100%, with most of the target protein sequences having an alignment similarity of 98% or above.
原始数据中质谱鉴定到有注释的蛋白共计109个,其中1组特有蛋白11个,2组特有蛋白63个,两组共有蛋白35个。所鉴定到的蛋白质序列信息批量提取自UniProtKB数据库(http://www.uniprot.org)(版本号:Release 2014_10),以FASTA格式保存。A total of 109 annotated proteins were identified by mass spectrometry in the original data, including 11 proteins unique to group 1, 63 proteins unique to group 2, and 35 proteins shared by both groups. The identified protein sequence information was extracted in batches from the UniProtKB database (http://www.uniprot.org) (version number: Release 2014_10) and saved in FASTA format.
此外,通过检索数据库UniProt knowledgebase(Swiss-Prot/TrEMBL,www.expasy.org)和Gene Ontology(GO)Database(http://www.geneontology.org/),对这三组蛋白质所参与的细胞功能进程和涉及的生物细胞学功能进行了初步分析。In addition, by searching the database UniProt knowledgebase (Swiss-Prot/TrEMBL, www.expasy.org) and Gene Ontology (GO) Database (http://www.geneontology.org/), the cellular functions involved in these three groups of proteins The processes and the biological cellular functions involved were initially analyzed.
2.3.1 两组发酵液共有蛋白分析:2.3.1 Analysis of common proteins in two groups of fermentation broths:
利用Blast2GO(Version 2.8.0)中的Mapping功能对所有鉴定到的蛋白的比对序列所关联的GO功能条目进行提取,共提取到与其中27个蛋白序列(77.14%)相关的126条GO功能条目,本次项目中,共25条蛋白序列被78条GO功能条目注释,平均GO层次为5.41。经过补充注释,最终的注释统计结果为:共27条蛋白序列被91条GO功能条目注释。Using the Mapping function in Blast2GO (Version 2.8.0) to extract the GO function entries associated with the aligned sequences of all identified proteins, a total of 126 GO functions related to 27 protein sequences (77.14%) were extracted Items, in this project, a total of 25 protein sequences were annotated by 78 GO function items, with an average GO level of 5.41. After supplementary annotation, the final statistical result of annotation is: a total of 27 protein sequences were annotated by 91 GO functional entries.
共有组蛋白WEGO功能注释聚类分析:Consensus histone WEGO functional annotation cluster analysis:
在共有组35个蛋白质中,根据蛋白WEGO功能注释聚类分析,其中,参与生物学途径过程(biological progress)的蛋白注释占51%,分子功能(molecular function)的蛋白注释28%,细胞学组件分析(cell component)注释占20%。利用WEGO软件对鉴定到的蛋白质的主要功能类别完成GO功能富集度计算与图示化结果如图3所示。Among the 35 proteins in the total group, according to the clustering analysis of protein WEGO functional annotations, the annotations of proteins involved in biological process (biological progress) accounted for 51%, the annotations of proteins of molecular function (molecular function) accounted for 28%, and the annotations of cytological components Analysis (cell component) annotations account for 20%. Using WEGO software to complete the GO functional enrichment calculation and graphical representation of the main functional categories of the identified proteins, the results are shown in Figure 3.
共有组蛋白GO功能注释Consensus histone GO functional annotation
其中,如图4所示,在Biological Progress图分类中,参与代谢过程(metabolicprocess)的有20种蛋白注释,占总BP数量39.2%,细胞过程(cellular process)有15种蛋白注释,占BP总数的29.4%,剩余的参与到生物调节(biological regulation)、信号通路(signaling)、多种生物进程(single-organism process/multi-organism process)、细胞原件组分生物合成途径(cellular component organization or biogenesis)、应激反应(response to stimulus)等过程中;在Molecular Function分类图(图5)中,具有催化活性(catalytic activity)的有18种蛋白注释,占MF总数的64.3%,剩余蛋白分别参与到结合蛋白(binding)、分子结构活性(structural molecule activity)、分子转运活性(molecular transducer activity)等过程中;如图6所示,在Cell Component分类中,细胞组分(cell)共7种蛋白序列,占CC总量的35%,其余的蛋白分别参与到胞外活性(extracellular region)、细胞器(organelle)、细胞膜(membrane)、大分子混合物(macromolecular complex)等过程中。Among them, as shown in Figure 4, in the Biological Progress graph classification, there are 20 protein annotations involved in the metabolic process, accounting for 39.2% of the total BP, and 15 protein annotations in the cellular process, accounting for the total BP 29.4% of them, and the rest are involved in biological regulation, signaling, multiple biological processes (single-organism process/multi-organism process), cellular component organization or biogenesis ), stress response (response to stimulus) and other processes; in the Molecular Function classification map (Figure 5), there are 18 proteins with catalytic activity (catalytic activity), accounting for 64.3% of the total MF, and the remaining proteins are involved in In the process of binding protein (binding), molecular structure activity (structural molecule activity), molecular transport activity (molecular transducer activity), etc.; as shown in Figure 6, in the Cell Component classification, there are 7 kinds of proteins in the cell component (cell) Sequences account for 35% of the total CC, and the rest of the proteins are involved in processes such as extracellular regions, organelles, membranes, and macromolecular complexes.
KEGG通路注释:KEGG pathway annotation:
这些蛋白通过在KEGG数据库中查询比对,参与到的代谢有糖酵解途径Glycolysis/Gluconeogenesis(4),光合固碳作用Carbon fixation in photosyntheticorganisms(3),淀粉蔗糖代谢Starch and sucrose metabolism(2),甲烷代谢Methanemetabolism(1)。These proteins are queried and compared in the KEGG database, and the metabolisms involved include Glycolysis/Gluconeogenesis (4), Carbon fixation in photosynthetic organisms (3), Starch and sucrose metabolism of starch and sucrose metabolism (2), Methane metabolism Methanemetabolism (1).
2.3.2 两组发酵液特有蛋白分析:2.3.2 The specific protein analysis of the two groups of fermentation broth:
利用Blast2GO(Version 2.8.0)中的Mapping功能对所有鉴定到的蛋白的比对序列所关联的GO功能条目进行提取,共提取到与其中56个蛋白序列(75.68%)相关的296条GO功能条目。本项目中,共54条蛋白序列被182条GO功能条目注释,平均GO层次为6.775。经过补充注释,最终的注释统计结果为:共59条蛋白序列被225条GO功能条目注释。Using the Mapping function in Blast2GO (Version 2.8.0) to extract the GO function entries associated with the aligned sequences of all identified proteins, a total of 296 GO functions related to 56 protein sequences (75.68%) were extracted entry. In this project, a total of 54 protein sequences were annotated by 182 GO functional entries, with an average GO level of 6.775. After supplementary annotation, the final statistical result of annotation is: a total of 59 protein sequences were annotated by 225 GO functional entries.
特有蛋白WEGO功能注释聚类分析:WEGO functional annotation cluster analysis of specific proteins:
特有蛋白WEGO功能注释聚类分析如图7所示:其中,1组特有蛋白共11种,参与生物进程(biological progress)的蛋白共12条注释,占50.0%,参与分子功能(molecularfunction)的蛋白注释7种,占29.2%,细胞学组分(cell component)的蛋白注释5种,占20.8%;2组特有蛋白63种,参与生物进程(biological progress)的蛋白共105条注释,占46.1%,参与分子功能(molecular function)的蛋白注释77种,占33.8%,细胞学组分(cell component)的蛋白注释41种,占17.9%。The clustering analysis of WEGO functional annotation of unique proteins is shown in Figure 7: Among them, there are 11 kinds of unique proteins in a group, and 12 annotations of proteins involved in biological progress (biological progress), accounting for 50.0%, proteins involved in molecular function (molecular function) Annotated 7 kinds, accounting for 29.2%, 5 kinds of protein annotations of cell component, accounting for 20.8%; 63 kinds of unique proteins in 2 groups, 105 annotations of proteins involved in biological progress, accounting for 46.1% , 77 proteins involved in molecular function were annotated, accounting for 33.8%, and 41 proteins were annotated in cell component, accounting for 17.9%.
特有蛋白GO功能注释:Functional annotation of specific protein GO:
如图8-10所示,其中,在1组特有蛋白中,Biological Process分类中主要参与代谢过程(metabolic process)的有8种蛋白注释,占BP总量的47.1%,单一生物过程(single-organism process)有5种蛋白注释,占BP 29.4%,细胞过程(cellular process)的蛋白注释有4种,占BP 23.5%,其余有应激反应(response to stimulus)(2),定位(localization)(1),细胞的生物合成(cellular component organization orbiogenesis)(1)等;Molecular Function分类中主要有催化活性(catalytic activity)(6),结合蛋白(binding)(6),转运活性(transporter activity)(1)等蛋白注释;CellularComponent分类中蛋白有细胞(cell)(2),细胞器(organelle)(1),大分子化合物(macromolecular complex)(1),胞外区(extracellular region)(1),细胞膜(membrane)(4).As shown in Figure 8-10, among the 1 group of unique proteins, there are 8 protein annotations that are mainly involved in the metabolic process (metabolic process) in the Biological Process classification, accounting for 47.1% of the total BP, and the single biological process (single- Organism process) has 5 protein annotations, accounting for 29.4% of BP, cellular process (cellular process) has 4 protein annotations, accounting for 23.5% of BP, and the rest have stress response (response to stimulus) (2), localization (localization) (1), cell biosynthesis (cellular component organization orbiogenesis) (1), etc.; Molecular Function classification mainly includes catalytic activity (catalytic activity) (6), binding protein (binding) (6), transporter activity (transporter activity) (1) Protein annotation; CellularComponent classification includes cell (2), organelle (1), macromolecular complex (1), extracellular region (1), Cell membrane (membrane) (4).
在2组特有蛋白中,Biological Process分类中主要有细胞过程(cellularprocess)的蛋白注释有33种,占BP总量的34.7%,代谢过程(metabolic process)蛋白注释有32种,占BP总量的33.7%,单一生物过程(single-organism process)有10种蛋白注释,细胞生物合成的(cellular component organization or biogenesis)有8种,其余的有定位(localization)(5),应激反应(response to stimulus)(2),生物调节(biogicalregulation)(6)等;Molecular Function分类中主要有催化活性(catalytic activity)蛋白注释30种,占MF总量的45.5%,结合蛋白(binding)注释27种,占MF的40.9%,其余有分子结构蛋白(structural molecule)(6),转运蛋白(transporter)(3),具有转录因子活性的结合蛋白(protein binding transcription factor activity)(1),具有转录活性的核酸(nucleic acid binding transcription factor activity)(1)等注释;以及抗氧化活性(antioxidant activity)(1),电子载体活性(electron carrier activity)(1);CellularComponent分类中注释蛋白有细胞(cell)的18种,占CC总量的40.9%,细胞器(organelle)有9种,占CC的20.5%,大分子化合物(macromolecular complex)(9),胞外区(extracellular region)(4),细胞膜(membrane)(4),膜封闭腔(membrane-enclosedlumen)(1)。Among the two groups of unique proteins, there are 33 annotations of cellular process proteins in the Biological Process classification, accounting for 34.7% of the total BP, and 32 annotations of metabolic process proteins, accounting for 10% of the total BP. 33.7%, single-organism process has 10 kinds of protein annotations, cell biosynthesis (cellular component organization or biogenesis) has 8 kinds, and the rest have localization (localization) (5), stress response (response to stimulus) (2), biological regulation (biological regulation) (6), etc.; in the Molecular Function classification, there are mainly 30 annotations of catalytic activity proteins, accounting for 45.5% of the total MF, and 27 annotations of binding proteins, Accounting for 40.9% of MF, the rest include molecular structural protein (structural molecule) (6), transporter (transporter) (3), binding protein with transcription factor activity (protein binding transcription factor activity) (1), transcriptional activity Nucleic acid binding transcription factor activity (1) and other annotations; and antioxidant activity (antioxidant activity) (1), electron carrier activity (electron carrier activity) (1); the annotation protein in the CellularComponent classification has cell (cell) 18 species, accounting for 40.9% of the total CC, 9 organelles, accounting for 20.5% of the CC, macromolecular complex (9), extracellular region (4), cell membrane (membrane ) (4), membrane-enclosed lumen (membrane-enclosed lumen) (1).
KEGG通路注释:KEGG pathway annotation:
1组特有蛋白信息在KEGG数据库中进行比对分析,得到其中一些匹配蛋白的代谢途径,剩余蛋白因研究有限,还无法找到其匹配的信息,本组蛋白共参与8条代谢途径:果糖甘露糖代谢Fructose and mannose metabolism(1),嘌呤代谢Purine metabolism(1),糖酵解Glycolysis/Gluconeogenesis(1),核黄素代谢Riboflavin metabolism(1),甲烷代谢Methane metabolism(1),戊糖磷酸途径Pentose phosphate pathway(1),氨基苯甲酸降解Aminobenzoate degradation(1),光合固碳作用Carbon fixation in photosynthenicorganisms(1)。A group of unique protein information was compared and analyzed in the KEGG database, and the metabolic pathways of some of the matching proteins were obtained. Due to limited research, the matching information of the remaining proteins could not be found. This group of proteins participated in 8 metabolic pathways: fructomannose Fructose and mannose metabolism(1), Purine metabolism(1), Glycolysis/Gluconeogenesis(1), Riboflavin metabolism(1), Methane metabolism(1), Pentose phosphate pathway Phosphate pathway(1), Aminobenzoate degradation(1), Carbon fixation in photosynthenicorganisms(1).
2组特有蛋白KEGG数据库中进行比对分析后,匹配蛋白共参与24条代谢途径:嘌呤代谢Purine metabolism(4),糖酵解Glycolysis/Gluconeogenesis(4),光合固碳作用Carbon fixation in photosynthenic organisms(2),氮代谢Nitrogen metabolism(2),丙氨酸,天门冬氨酸和谷氨酸代谢Alanine,asparatate and glutamate metabolism(2),原核固碳作用Carbon fixation pathways in prokaryotes(2),丙酮酸代谢Pyruvatemetabolism(1),磷酸肌醇代谢inositol phosphate metabolism(1),泛酸盐和CoA生物合成Pantothenate and CoA biosynthesis(1),乙醛酸盐和二羧酸途径Glyoxylate anddicarboxylate metabolism(1),柠檬酸盐循环Citrate cycle(TCA cycle)(1),缬氨酸,亮氨酸和异亮氨酸的生物合成Valine,leucine and isoleucine biosynthesis(1),甘氨酸,丝氨酸和苏氨酸代谢Glycine,serine and threonine metabolism(1),氨基糖和核苷酸糖代谢Amino sugar and nucleotide sugar metabolism(1),半胱氨酸和蛋氨酸代谢Cysteine and methionine metabolism(1),细胞色素P450药物代谢Drug metabolism-cytochrome P450(1),果糖和甘露糖代谢Fructose and mannose metabolism(1),精氨酸和脯氨酸代谢Arginine and proline metabolism(1),细胞色素P450外源性化学物质代谢Metabolism of xenobiotics by cytochrome P450(1),萘降解Naphthalene degradation(1),氯代烷和氯烯烃的降解Chloroalkane and chloroalkene degradation(1),脂肪酸降解Fatty acid degradation(1),酪氨酸代谢Tyrosine metabolism(1),维生素A代谢Retinol metabolism(1)。After comparing and analyzing the two groups of unique proteins in the KEGG database, the matching proteins participated in 24 metabolic pathways: Purine metabolism (4), glycolysis/Glycolysis/Gluconeogenesis (4), and photosynthetic carbon fixation (Carbon fixation in photosynthetic organisms ( 2), nitrogen metabolism Nitrogen metabolism (2), alanine, aspartate and glutamate metabolism Alanine, asparatate and glutamate metabolism (2), prokaryotic carbon fixation Carbon fixation pathways in prokaryotes (2), pyruvate metabolism Pyruvate metabolism (1), inositol phosphate metabolism (1), Pantothenate and CoA biosynthesis (1), glyoxylate and dicarboxylate pathway Glyoxylate and dicarboxylate metabolism (1), citrate Citrate cycle (TCA cycle) (1), Valine, leucine and isoleucine biosynthesis (1), Glycine, serine and threonine metabolism Glycine, serine and threonine metabolism (1), amino sugar and nucleotide sugar metabolism Amino sugar and nucleotide sugar metabolism (1), cysteine and methionine metabolism Cysteine and methionine metabolism (1), cytochrome P450 drug metabolism Drug metabolism-cytochrome P450 (1) , fructose and mannose metabolism Fructose and mannose metabolism (1), arginine and proline metabolism Arginine and proline metabolism (1), cytochrome P450 metabolism of exogenous chemical substances Metabolism of xenobiotics by cytochrome P450 (1), naphthalene Degradation of Naphthalene degradation(1), Chloroalkane and chloroalkene degradation(1), Fatty acid degradation tty acid degradation (1), tyrosine metabolism Tyrosine metabolism (1), vitamin A metabolism Retinol metabolism (1).
3 结论:3 Conclusions:
1组中共鉴定到肽段68个,蛋白组47个;2组共鉴定到肽段241个,蛋白组121个。原始数据中鉴定到有注释的蛋白共计109个,其中1组特有蛋白11个,2组特有蛋白63个,两组共有蛋白35个。说明两组发酵液中均存在丰富的蛋白质,但该发明中的高产蛋白酵母菌株发酵液中蛋白含量及种类均高于出发菌。A total of 68 peptides and 47 proteins were identified in group 1; 241 peptides and 121 proteins were identified in group 2. A total of 109 annotated proteins were identified in the original data, including 11 proteins unique to group 1, 63 proteins unique to group 2, and 35 proteins shared by both groups. It shows that there is abundant protein in the fermented liquids of the two groups, but the protein content and types in the fermented liquids of the high-yielding yeast strains in this invention are higher than those of the starting bacteria.
2组发酵液较1组中不仅蛋白含量较丰富,且参加的代谢通路也较多。同时,发酵液中普遍存在较高的碳水化合物代谢和能量代谢,还参与影响了少量生物学通路等,2组有唯一具有电子载体活性和转运子活性的蛋白质,可能行使着生物调控、刺激反应和定位进程等功能。该发明的菌株发酵液中蛋白功能和参与的代谢途径远多于出发菌。Compared with group 1, the fermented liquid of group 2 not only has richer protein content, but also participates in more metabolic pathways. At the same time, high carbohydrate metabolism and energy metabolism generally exist in the fermentation broth, and they also participate in and affect a small number of biological pathways. The two groups have the only protein with electron carrier activity and transporter activity, which may exercise biological regulation and stimulate response. And positioning process and other functions. The protein functions and involved metabolic pathways in the bacterial strain fermentation liquid of the invention are far more than those of the starting bacteria.
实施例4:响应面法优化培养条件Embodiment 4: Optimization of culture conditions by response surface methodology
1.响应面分析因素水平的选择1. Selection of factor levels for response surface analysis
表4-1显示为响应面分析因素与水平。Table 4-1 shows the factors and levels for response surface analysis.
表4-1Table 4-1
3.2 响应面试验设计与结果3.2 Response surface test design and results
Box-Behnken试验设计与结果如表4-2所示。采用Design-Expert软件对表2试验数据进行多元回归分析,得到酵母菌菌落数与各因素变量的二次回归模型为:Y=2.87+0.13A-0.085B+0.015C+0.025AB+5.000E-003AC+0.000BC+2.000E-003A2-0.29B2+2.000E-003C2。Box-Behnken test design and results are shown in Table 4-2. Using Design-Expert software to carry out multiple regression analysis on the test data in Table 2, the quadratic regression model of the number of yeast colonies and each factor variable is: Y=2.87+0.13A-0.085B+0.015C+0.025AB+5.000E- 003AC+0.000BC+2.000E-003A2-0.29B2+2.000E-003C2.
表4-2Table 4-2
运用软件对模型进行方差分析,结果如表4-3所示。Use the software to analyze the variance of the model, and the results are shown in Table 4-3.
表4-3Table 4-3
3.3 模型方程的验证实验:3.3 Verification experiment of the model equation:
通过软件Design-Expert.V8.0.6求出回归模型的极值点,即最佳培养条件:初始pH为5.8,培养温度为27.26℃,装液量为100.00mL,酵母菌菌落数理论预测最大值为2.89*108CFU/mL。为检验响应面分析法的可靠性,选择最佳培养条件验证实验,考虑到实际操作方便,调整最佳培养条件为:初始pH为5.8,培养温度为27.30℃,装液量为100.00mL。在此条件下,进行3次平行试验,酵母菌菌落数为3.00*108CFU/mL。与理论预测值相近,说明该模型是可信的,响应面分析法用于酵母菌制剂培养条件的优化是可行的。Use the software Design-Expert.V8.0.6 to find the extreme point of the regression model, that is, the best culture conditions: the initial pH is 5.8, the culture temperature is 27.26°C, the liquid volume is 100.00mL, and the theoretically predicted maximum number of yeast colonies It is 2.89*10 8 CFU/mL. In order to test the reliability of the response surface analysis method, the best culture conditions were selected for the verification experiment. Considering the convenience of practical operation, the best culture conditions were adjusted as follows: the initial pH was 5.8, the culture temperature was 27.30 °C, and the liquid volume was 100.00 mL. Under these conditions, three parallel experiments were carried out, and the number of yeast colonies was 3.00*10 8 CFU/mL. It is close to the theoretical prediction value, which shows that the model is credible, and the response surface analysis method is feasible for the optimization of yeast preparation culture conditions.
最佳培养条件为:初始pH为5.8,培养温度为27.30℃,装液量为100.00mLThe optimal culture conditions are: the initial pH is 5.8, the culture temperature is 27.30°C, and the liquid volume is 100.00mL
实施例5:C20140911菌株发酵液对仔猪肠道微生物区系的影响Example 5: Effect of C20140911 Strain Fermentation Broth on the Intestinal Microflora of Piglets
1 材料与方法1 Materials and methods
1.1 材料1.1 Materials
1.1.1 试剂与仪器1.1.1 Reagents and instruments
C20140911发酵液;原有酵母发酵液;麦康凯(杭州微生物试剂有限公司);SS琼脂(杭州微生物试剂有限公司);MRS(OXOID,ENGLAND);血平板(兰州荣昌生物制品公司)。C20140911 fermentation broth; original yeast fermentation broth; MacConkey (Hangzhou Microbial Reagent Co., Ltd.); SS agar (Hangzhou Microbial Reagent Co., Ltd.); MRS (OXOID, ENGLAND); blood plate (Lanzhou Rongchang Biological Products Co., Ltd.).
1.1.2 试验动物1.1.2 Experimental animals
试验在榆中某猪场进行,选取健康的20d仔猪9窝,每窝6头,共54头(杜洛克×约克×长白三元杂交猪),随机分为3组,每组3窝,每窝为1重复。试验期间动物按常规进行管理,自由采食,自由饮水,试验期间腹泻不用药物治疗。The experiment was carried out in a pig farm in Yuzhong. Nine litters of healthy 20-day piglets were selected, with six pigs in each litter. A total of 54 piglets (Duroc×York×Landrace three-way hybrid pigs) were randomly divided into 3 groups, with 3 litters in each group. The litter was 1 replicate. During the test period, the animals were managed according to the routine, free to eat and drink water, and the diarrhea was not treated with drugs during the test period.
1.2.试验设计1.2. Experimental design
试验为3处理3重复单因子试验,3处理分别为第1组(C20140911发酵液组)、第2组(原有酵母菌株发酵液组)和第3组(空白对照组),试验动物从20d开始连续观察3天,无异常则开始口服发酵液,连续5天,28d断奶,分别于23d、28d、35d、42d于各处理重复中随机选1头进行剖杀,对回肠、盲肠、结肠两端结扎,在一定部位无菌采取肠道内容物。内容物-20℃厌氧保存,用于微生物区系检测。The test was 3 treatments and 3 repeated single factor experiments. The 3 treatments were the first group (C20140911 fermentation broth group), the second group (the original yeast strain fermentation broth group) and the third group (blank control group). Start to observe continuously for 3 days, if there is no abnormality, start to take the fermentation liquid orally, continue for 5 days, wean on 28d, and randomly select 1 head in each treatment repetition on 23d, 28d, 35d, and 42d for dissection. The end is ligated, and the intestinal contents are aseptically collected at a certain site. The contents are stored anaerobically at -20°C for microbial flora detection.
1.3 试验方法1.3 Test method
1.3.1 常规方法分离计数1.3.1 Separation and counting by conventional methods
分别取回肠内容物约0.2g,加入约1.8ml生理盐水中,摇匀;盲肠和结肠内容物约0.5g,加入4.5ml生理盐水中,摇匀.然后生理盐水10倍梯度稀释,取0.1ml加入到不同平板分类计数.每份样品平行做两遍,选取菌落数(CFU)在30~300之间的培养皿计数,算平均值,计算出每克内容物的细菌数,并以其对数值表示。其中包括乳杆菌(MRS)、双歧杆菌(培养基自制)、大肠杆菌(麦康凯)、沙门氏菌(SS)及需氧菌总数和厌氧菌总数(鲜血平板)的测定。Take about 0.2g of ileal content, add about 1.8ml of normal saline, and shake well; about 0.5g of cecum and colon content, add about 4.5ml of normal saline, and shake well. Then the normal saline is diluted 10 times, take 0.1 mL was added to different plates for classification and counting. Each sample was performed twice in parallel, and the number of culture dishes with a colony number (CFU) between 30 and 300 was selected for counting, and the average value was calculated to calculate the number of bacteria per gram of content, and the logarithmic representation. These include the determination of Lactobacillus (MRS), Bifidobacterium (self-made culture medium), Escherichia coli (McConkey), Salmonella (SS) and the total number of aerobic bacteria and anaerobic bacteria (fresh blood plate).
2 结果2 results
2.1 发酵液对回肠微生物区系的影响2.1 Effect of fermentation broth on ileum microflora
2.1.1 对大肠杆菌数量的影响2.1.1 Effects on the number of E. coli
表5-1 各处理组对仔猪回肠内容物大肠杆菌的影响Table 5-1 Effects of each treatment group on Escherichia coli in piglet ileum
注:1)表中数据单位为lgCFU/g湿内容物;2)表中数据为均值±标准误;3)肩注字母表示相同肠段、相同日龄的比较;下同。Note: 1) The unit of the data in the table is lgCFU/g wet content; 2) The data in the table is the mean ± standard error; 3) The letters on the shoulder indicate the comparison of the same intestinal segment and the same age; the same below.
试验1组和试验2组回肠内容物大肠杆菌数随日龄增加有所降低,对照组随日龄增加升高。试验1组、试验2组与对照组42日龄时差异显著(p<0.05)(p<0.01)试验1组与试验2组差异不显著。The number of Escherichia coli in the ileum of the test group 1 and test 2 decreased with the increase of age, while that of the control group increased with the increase of age. There was a significant difference between the test group 1, the test group 2 and the control group at 42 days of age (p<0.05) (p<0.01). The difference between the test group 1 and the test group 2 was not significant.
2.1.2 对沙门氏菌数量的影响2.1.2 Effect on the number of Salmonella
在试验过程中,试验1组与试验2组回肠内容物沙门氏菌数随日龄增加而降低,对照组断奶后沙门氏菌数量增加,且始终高于其它两组。两试验组与对照组相比,28d、35d差异不显著,42d差异极显著(p<0.01),但两者之间无差异显著性。During the test, the number of Salmonella in the ileum of the test group 1 and test 2 decreased with the increase of age, and the number of Salmonella in the control group increased after weaning, and was always higher than that of the other two groups. Compared with the control group, the difference between the two test groups was not significant at 28d and 35d, and the difference was extremely significant at 42d (p<0.01), but there was no significant difference between the two groups.
表5-2 各处理组对仔猪回肠内容物沙门氏菌的影响Table 5-2 Effect of each treatment group on Salmonella in piglet ileum content
2.1.3 对需氧菌数量的影响2.1.3 Effect on the number of aerobic bacteria
表5-3 各处理组对仔猪回肠内容物总需氧菌的影响Table 5-3 The effect of each treatment group on the total aerobic bacteria in piglet ileum
在试验过程中,试验1组和试验2组回肠需氧菌数量整体呈下降趋势,而对照组则随日龄增加而上升。试验1组与试验2组无显著差异;试验1组与对照组相比,28d、35d差异不显著,42d差异显著(p<0.05);试验2组与对照组相比,28d、35d差异不显著,42d差异显著(p<0.05)。During the test, the number of aerobic bacteria in the ileum of the test 1 and test 2 groups showed an overall downward trend, while that of the control group increased with the increase of age. There was no significant difference between the test group 1 and the test group 2; compared with the control group, the difference was not significant at 28d and 35d, but the difference was significant at 42d (p<0.05); compared with the control group, the difference was not significant at 28d and 35d. Significantly, the 42d difference was significant (p<0.05).
从上述结果可以看出:各处理组在28d、35d时对回肠有害菌影响的差异不显著,42d时试验1组、试验2组有害菌数量显著低于对照组(p<0.05),而试验1组与试验2组之间差异不显著。由此说明本发明菌株发酵液与原有酵母发酵液作用相似,均可以有效降低有害菌数量From the above results, it can be seen that the difference of each treatment group on the harmful bacteria in the ileum was not significant at 28 days and 35 days, and the number of harmful bacteria in the test group 1 and test group 2 was significantly lower than that of the control group at 42 days (p<0.05), while the test group There was no significant difference between group 1 and group 2. This shows that the fermented liquid of the bacterial strain of the present invention is similar to the effect of the original yeast fermented liquid, and can effectively reduce the number of harmful bacteria
2.1.4 对双歧杆菌数量的影响2.1.4 Effect on the number of bifidobacteria
表5-4 各处理组对仔猪回肠内容物双歧杆菌的影响Table 5-4 The effect of each treatment group on the content of bifidobacteria in piglet ileum
由表5-4可知,回肠内容物双歧杆菌数,在28日龄试验1组显著高于对照组(p<0.05),其它日龄各组之间差异不显著;但随着日龄的增加各组呈上升趋势As can be seen from Table 5-4, the number of bifidobacteria in the ileum content was significantly higher than that of the control group (p<0.05) in the 28-day-old test group 1, and the difference between the other groups was not significant; Increasing each group showed an upward trend
2.1.5 对乳酸杆菌数量的影响2.1.5 Effect on the number of Lactobacillus
表5-5 各处理组对仔猪回肠内容物乳酸杆菌的影响Table 5-5 The effect of each treatment group on the content of Lactobacillus in the ileum of piglets
由表5-5可知,回肠内容物乳酸杆菌数随着日龄的增加,试验1组和试验2组呈上升趋势。在整个试验期间试验1组和试验2组显著高于对照组(p<0.05);试验1组和试验2组差异不显著。It can be seen from Table 5-5 that the number of Lactobacillus in the ileum content increased with the increase of age, and the test group 1 and test 2 showed an upward trend. During the whole test period, the experimental group 1 and the experimental group 2 were significantly higher than the control group (p<0.05); the difference between the experimental group 1 and the experimental group 2 was not significant.
2.1.6.对厌氧菌数量的影响2.1.6. Effect on the number of anaerobic bacteria
表5-6 各处理组对仔猪回肠内容物总厌氧菌的影响Table 5-6 The effect of each treatment group on the total anaerobic bacteria in piglet ileum content
由表5-6可知,在整个试验过程中,回肠内容物总厌氧菌数随着日龄的增加,试验1组和试验2组呈上升趋势,对照组保持平稳。试验1组和试验2组总厌氧菌数始终高于对照组,但各组之间差异不显著。It can be seen from Table 5-6 that during the whole test process, the total anaerobic bacteria count in the ileum content increased with the age, and the test group 1 and test 2 showed an upward trend, while the control group remained stable. The total number of anaerobic bacteria in the test group 1 and the test group 2 was always higher than that in the control group, but there was no significant difference between the groups.
2.2 发酵液对盲肠微生物区系的影响2.2 Effect of fermentation broth on cecum microflora
2.2.1 对大肠杆菌数量的影响2.2.1 Effects on the number of E. coli
表5-7 各处理组对仔猪盲肠内容物大肠杆菌的影响Table 5-7 Effects of each treatment group on Escherichia coli in piglet cecum contents
在盲肠,随着日龄增加,试验1组和试验2组大肠杆菌数量均有所下降,对照组在28d时下降,随后开始上升,整个试验期间对照组均高于试验1组和试验2组。试验1组与试验2组之间差异不显著,与对照组35d差异显著(p<0.05),42d差异极显著(p<0.01);试验2组与对照组35d、42d差异极显著(p<0.01)。In the cecum, with the increase of age, the number of E. coli in the test group 1 and the test group 2 decreased, the control group decreased at 28 days, and then began to rise, and the control group was higher than the test group 1 and test 2 during the whole test period . The difference between the test group 1 and the test group 2 was not significant, but it was significantly different from the control group at 35 days (p<0.05), and the difference at 42 days was extremely significant (p<0.01); the difference between test group 2 and the control group at 35 days and 42 days was very significant (p<0.05) 0.01).
2.2.2 对沙门氏菌数量的影响2.2.2 Effect on the number of Salmonella
表5-8 各处理组对盲肠内容物中沙门氏菌的影响Table 5-8 Effect of each treatment group on Salmonella in cecal contents
试验中,试验1组与试验2组盲肠内容物中沙门氏菌数量呈下降趋势;对照组断奶后上升,到42d时略有下降,但仍然高于其它两组。试验1组低于试验2组,但差异不显著;低于对照组35d差异显著(p<0.05),42d差异极显著(p<0.01)。试验2组与对照组相比,35d差异显著(p<0.05),42d差异极显著(p<0.01)。In the test, the number of Salmonella in the cecal contents of the test group 1 and the test group 2 showed a downward trend; the control group increased after weaning, and decreased slightly at 42 days, but was still higher than the other two groups. The test group 1 was lower than the test group 2, but the difference was not significant; the test group was lower than the control group at 35 days with a significant difference (p<0.05), and at 42 days with a very significant difference (p<0.01). Compared with the control group, there was a significant difference at 35 days (p<0.05), and a very significant difference at 42 days (p<0.01).
2.2.3 对需氧菌数量的影响2.2.3 Effect on the number of aerobic bacteria
试验中,试验1组与试验2组盲肠内容物需氧菌数量随日龄增加而降低,但试验1组42d较35d有所增加,高于试验2组;对照组随日龄增加而升高,35d、42d均高于其余两组。试验1组与试验2组相比,42d时高于试验2组,且差异显著(p<0.05);试验1组与对照组相比42d时差异极显著(p<0.01);试验2组与对照组相比,42d时差异极显著(p<0.01),其余不显著.In the test, the number of aerobic bacteria in the cecum content of the test group 1 and the test group 2 decreased with age, but the number of test group 1 increased at 42 days compared with 35 days, which was higher than that of test group 2; the control group increased with age , 35d, 42d were higher than the other two groups. Compared with the test group 2, the test group 1 was higher than the test group 2 at 42 days, and the difference was significant (p<0.05); the test group 1 was significantly different from the control group at 42 days (p<0.01); Compared with the control group, the difference was extremely significant at 42 days (p<0.01), and the rest were not significant.
表5-9 各处理组对仔猪盲肠内容物总需氧菌的影响Table 5-9 Effect of each treatment group on the total aerobic bacteria in piglet cecum contents
Sheet3-9 Effect of different treatment on aerobic bacterial in cecumof pigletsSheet3-9 Effect of different treatment on aerobic bacteria in cecum of piglets
从上述结果看出,在盲肠试验1组与试验2组酵母在35d、42d均可降低有害菌数量,二者作用相似,效果比回肠好;且试验2组控制需氧菌数量的效果优于试验1组。From the above results, it can be seen that the yeast in the cecum test group 1 and the test group 2 can reduce the number of harmful bacteria at 35 days and 42 days, and the effects of the two are similar, and the effect is better than that of the ileum; and the effect of controlling the number of aerobic bacteria in the test group 2 is better than that of the ileum Test 1 group.
2.2.4 对双歧杆菌数量的影响2.2.4 Effect on the number of bifidobacteria
表5-10 各处理组对仔猪盲肠内容物双歧杆菌的影响Table 5-10 Effects of each treatment group on bifidobacteria in piglet cecum contents
由表5-10可知,盲肠内容物双歧杆菌数随着日龄的增加试验1组和试验2组呈上升趋势,对照组略有下降。试验期间,试验1组与试验2组始终高于对照组;28日龄和42日龄差异显著(p<0.05);试验1组高于试验2组,但差异不显著。It can be seen from Table 5-10 that the number of bifidobacteria in the cecal contents increased with the increase of the age in the test group 1 and test 2, and decreased slightly in the control group. During the test, the test group 1 and the test group 2 were always higher than the control group; the difference between the age of 28 days and the age of 42 days was significant (p<0.05); the test group 1 was higher than the test group 2, but the difference was not significant.
2.2.5 对乳酸杆菌数量的影响2.2.5 Effect on the number of Lactobacillus
表5-11 各处理组对仔猪盲肠内容物乳酸杆菌的影响Table 5-11 The effect of each treatment group on the content of lactobacilli in piglet cecum
由表5-11可知,盲肠内容物乳酸杆菌数随着日龄的增加试验1组和试验2组呈上升趋势。试验期间,试验1组和试验2组始终高于对照组,28日龄差异极显著,42日龄差异显著。试验1组高于试验2组,但差异不显著。It can be seen from Table 5-11 that the number of Lactobacillus in the cecum content increased with the increase of the age in the test group 1 and the test group 2. During the test, the test 1 and test 2 groups were always higher than the control group, the difference was extremely significant at 28 days, and the difference at 42 days was significant. Test 1 group was higher than test 2 group, but the difference was not significant.
2.2.6.对厌氧菌数量的影响2.2.6. Effect on the number of anaerobic bacteria
表5-12 各处理组对仔猪盲肠内容物总厌氧菌的影响Table 5-12 Effects of each treatment group on the total anaerobic bacteria in piglet cecal contents
从5-12看出:试验1组和试验2组盲肠内容物总厌氧菌数随着日龄的增加呈上升趋势,对照组略有下降,基本保持平稳。试验1组和试验2组始终高于对照组,28日龄差异显著(p<0.05),35-42日龄差异极显著(p<0.01);试验1组高于试验2组,差异不显著。From 5-12, it can be seen that the total anaerobic bacteria count in the cecal contents of the test group 1 and test group 2 showed an upward trend with the increase of the age, while the control group decreased slightly and basically remained stable. The test group 1 and test group 2 were always higher than the control group, the difference was significant at 28 days (p<0.05), and the difference at 35-42 days was extremely significant (p<0.01); the test group 1 was higher than test group 2, the difference was not significant .
从上述结果看出(表5-10~5-12):C20140911发酵液和原有酵母菌株发酵液均可有效提高盲肠有益菌数量,说明二者作用相似,但C20140911发酵液效果优于原有酵母菌株发酵液。It can be seen from the above results (Table 5-10~5-12): Both the C20140911 fermentation broth and the original yeast strain fermentation broth can effectively increase the number of beneficial bacteria in the cecum, indicating that the two have similar effects, but the C20140911 fermentation broth is better than the original Yeast strain fermentation broth.
2.3 断发酵液对结肠微生物区系的影响2.3 The effect of broken fermentation broth on the colonic microflora
2.3.1 对大肠杆菌数量的影响2.3.1 Effects on the number of E. coli
随着日龄的增加试验1组和试验2组结肠内容物中大肠杆菌数量呈下降趋势,对照组28d有所下降,35d上升。整个试验过程中,对照组均高于其它两组,与对试验1组相比42d差异显著(p<0.05);与试验2组相比35d、42d差异均显著(p<0.05);试验1组与试验2组差异不显著The number of Escherichia coli in the colon contents of the test group 1 and the test group 2 showed a downward trend with the increase of the age, the control group decreased at 28 days, and increased at 35 days. Throughout the test process, the control group was higher than the other two groups, and compared with the test 1 group, the 42d difference was significant (p<0.05); compared with the test 2 group, the 35d and 42d differences were significant (p<0.05); the test 1 There was no significant difference between the group and the test 2 groups
表5-13 各处理组对仔猪结肠内容物大肠杆菌的影响Table 5-13 Effects of each treatment group on Escherichia coli in piglet colon contents
2.3.2 对沙门氏菌数量的影响2.3.2 Effect on the number of Salmonella
表5-14 各处理组对结肠内容物沙门氏菌的影响Table 5-14 Effects of each treatment group on Salmonella in colonic contents
从上图可以看出,试验期间试验1组、试验2组结肠内容物沙门氏菌数整体呈下降趋势,试验1组在35d略有上升,但低于对照组,对照组在断奶后处于上升状态。试验1组与试验2组差异不显著,与对照组相比42d差异显著(p<0.05),其余时间不显著。试验2组与对照组相比35d、42d差异显著(p<0.05)。It can be seen from the figure above that during the test period, the number of Salmonella in the colon contents of the test group 1 and the test group 2 showed an overall downward trend, and the test group 1 increased slightly at 35 days, but was lower than the control group, and the control group was on the rise after weaning. The difference between test 1 group and test 2 group was not significant, compared with the control group, the difference was significant at 42 days (p<0.05), and the rest of the time was not significant. Compared with the control group, there was a significant difference in the 35d and 42d of the test group 2 (p<0.05).
2.3.3 对需氧菌数量的影响2.3.3 Effect on the number of aerobic bacteria
试验1组结肠需氧菌在断奶后略有上升,整个试验期间变化不大;试验2组在35d以前呈下降趋势,低于试验1组,42d上升高于试验1组;对照组随日龄增加而上升,到42d略有下降。试验1组与试验2组试验结果差异不显著;试验1组35d显著低于对照组(p<0.05);试验2组35d时极显著低于对照组(p<0.01)。Colonic aerobic bacteria in test group 1 increased slightly after weaning, and did not change much during the whole test period; test group 2 showed a downward trend before 35 days, which was lower than test group 1, and increased higher than test group 1 at 42 days; Increase and rise, to 42d a slight decline. There was no significant difference in test results between test group 1 and test group 2; test group 1 was significantly lower than control group at 35 days (p<0.05); test group 2 was extremely significantly lower than control group at 35 days (p<0.01).
表5-15 各处理组对结肠内容物需氧菌的影响Table 5-15 Effects of each treatment group on aerobic bacteria in colon contents
从上述结果看出(表5-14--5-15):在结肠试验1组与试验2组在35d、42d都可以有效控制有害菌数量,说明二者作用相似。It can be seen from the above results (Table 5-14--5-15): In colon test group 1 and test group 2, the number of harmful bacteria can be effectively controlled at 35 days and 42 days, which shows that the effects of the two are similar.
2.3.4 对双歧杆菌数量的影响2.3.4 Effect on the number of bifidobacteria
表5-16 各处理组对仔猪结肠内容物双歧杆菌的影响Table 5-16 Effects of each treatment group on bifidobacteria in colon content of piglets
由表5-16可知,结肠内容物中双歧杆菌数随着日龄的增加各组呈上升的趋势。在28日龄和35日龄,试验1组和试验2组显著高于对照组(p<0.05);42日龄试验1组显著高于对照组(p<0.05),试验2组与对照组差异不显著。实验期间试验1组高于试验2组,但差异不显著。It can be seen from Table 5-16 that the number of bifidobacteria in the colon content increases with the increase of age in each group. At the age of 28 days and 35 days, the test group 1 and the test group 2 were significantly higher than the control group (p<0.05); at the age of 42 days, the test group 1 was significantly higher than the control group (p<0.05), and the test group 2 was significantly higher than the control group (p<0.05). The difference was not significant. During the experiment, the test 1 group was higher than the test 2 group, but the difference was not significant.
2.3.5 对乳酸杆菌数量的影响2.3.5 Effect on the number of Lactobacillus
由表5-17可知,试验1组和试验2组结肠内容物中乳酸杆菌数随着日龄的增加呈上升趋势,对照组有所下降。28日龄,试验1组和试验2组极显著高于对照组(p<0.01),35~42日龄,试验1组和试验2组显著高于对照组(p<0.05);实验期间,试验1组在35-42日龄高于试验2组,但差异不显著。It can be seen from Table 5-17 that the number of lactobacilli in the colonic contents of test group 1 and test group 2 increased with the increase of age, while that of the control group decreased. At the age of 28 days, the test group 1 and the test group 2 were significantly higher than the control group (p<0.01), at the age of 35 to 42 days, the test group 1 and the test group 2 were significantly higher than the control group (p<0.05); during the experiment, Test 1 group was higher than test 2 group at 35-42 days old, but the difference was not significant.
表5-17 各处理组对仔猪结肠内容物乳酸杆菌的影响Table 5-17 Effects of each treatment group on lactobacilli in piglet colon contents
2.3.6.对厌氧菌数量的影响2.3.6. Effect on the number of anaerobic bacteria
表5-18 各处理组对仔猪结肠内容物总厌氧菌的影响Table 5-18 The effect of each treatment group on the total anaerobic bacteria in piglet colon content
由表5-18可知,结肠内容物总厌氧菌数随着日龄的增加,试验1组和试验2组呈上升趋势,对照组35日龄以前呈下降趋势,42日龄有所恢复;试验1组始终高于试验2组和对照组。试验1组在35-42日龄显著高于对照组(p<0.05),试验2组在35日龄显著高于对照组。试验1组与试验2组之间差异不显著。It can be seen from Table 5-18 that the total anaerobic bacteria count in the colon content increases with the increase of age, the test group 1 and the test group 2 showed an upward trend, the control group showed a downward trend before the age of 35 days, and recovered at the age of 42 days; The experimental group 1 was always higher than the experimental group 2 and the control group. The test group 1 was significantly higher than the control group at the age of 35-42 days (p<0.05), and the test group 2 was significantly higher than the control group at the age of 35 days. There was no significant difference between test 1 group and test 2 group.
综上所述(表5-16~3-18),C20140911菌株发酵液与原有酵母菌株发酵液均可不同程度增加结肠有益菌数量,C20140911菌株发酵液效果更好。In summary (Table 5-16-3-18), the fermentation broth of C20140911 strain and the original yeast strain can increase the number of beneficial bacteria in the colon to varying degrees, and the fermentation broth of C20140911 strain is better.
实施例6:C20140911菌株发酵液对仔猪生产性能的影响Example 6: Effect of C20140911 strain fermentation broth on piglet production performance
1.试验方法1. Test method
处理分组与实施例5相同,分别于21d、28d、35d、42d称重、记录采食量。The treatment groups were the same as in Example 5, and the animals were weighed and feed intake recorded on 21d, 28d, 35d, and 42d respectively.
表6-1 C20140911菌株发酵液对仔猪生产性能的影响Table 6-1 Effect of fermentation broth of C20140911 strain on piglet performance
注:表中数据采用平均数±标准误(X±SE)表示,同一行内比较。Note: The data in the table are expressed as mean ± standard error (X±SE), and are compared within the same row.
由表6-1可知,试验1组和试验2组较对照组均可显著提高断奶仔猪的日增重、日采食量,促进断奶仔猪生长,其中试验1组较试验2组日增重提高16.90%。试验1组仔猪体重与对照组相比,于35d差异显著(p<0.05),于42d试验末重差异极显著(p<0.01),日增重和日采食量亦极显著高于对照组(p<0.01),采食量有提高的趋势。而试验2组体重与对照组相比,在断乳后2周有明显增加的趋势,差异不显著;日增重和日采食量均极显著高于对照组(p<0.01)。料重比结果表明试验1组低于试验2组和对照组。It can be seen from Table 6-1 that compared with the control group, the test group 1 and the test group 2 can significantly increase the daily gain and daily feed intake of the weaned piglets, and promote the growth of the weaned piglets, and the test group 1 has a higher daily gain than the test group 2 16.90%. Compared with the control group, the weight of the piglets in the test group 1 was significantly different at 35 days (p<0.05), and at the end of the test at 42 days, the difference was extremely significant (p<0.01), and the daily weight gain and daily feed intake were also significantly higher than those of the control group (p<0.01), the feed intake tended to increase. Compared with the control group, the body weight of the test group 2 had a tendency to increase significantly at 2 weeks after weaning, and the difference was not significant; the daily weight gain and daily feed intake were significantly higher than those of the control group (p<0.01). The results of material to weight ratio showed that the test group 1 was lower than the test group 2 and the control group.
C20140911菌株发酵液与原有酵母菌株发酵液均可提高生产性能,但是C20140911菌株发酵液组效果优于原有酵母菌株发酵液。The fermentation broth of C20140911 strain and the fermentation broth of the original yeast strain can both improve the production performance, but the effect of the fermentation broth of the C20140911 strain is better than that of the original yeast strain.
最后应说明的是:以上所述仅为本发明的优选实施例而已,并不用于限制本发明,尽管参照前述实施例对本发明进行了详细的说明,对于本领域的技术人员来说,其依然可以对前述各实施例所记载的技术方案进行修改,或者对其中部分技术特征进行等同替换。凡在本发明的精神和原则之内,所作的任何修改、等同替换、改进等,均应包含在本发明的保护范围之内。Finally, it should be noted that: the above is only a preferred embodiment of the present invention, and is not intended to limit the present invention. Although the present invention has been described in detail with reference to the foregoing embodiments, for those skilled in the art, it still The technical solutions recorded in the foregoing embodiments may be modified, or some technical features thereof may be equivalently replaced. Any modifications, equivalent replacements, improvements, etc. made within the spirit and principles of the present invention shall be included within the protection scope of the present invention.
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WO2023098678A1 (en) | 2021-12-02 | 2023-06-08 | 安琪酵母股份有限公司 | High-protein saccharomyces cerevisiae and application thereof |
WO2024105627A1 (en) * | 2022-11-17 | 2024-05-23 | Nextferm Technologies Ltd. | High protein producing yeast strains and uses thereof |
WO2024170890A1 (en) * | 2023-02-13 | 2024-08-22 | Phenotypeca Limited | Engineered eukaryotic cell |
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