CN106324249A - Sample pretreatment method of secretory proteins in culture medium with serum - Google Patents

Sample pretreatment method of secretory proteins in culture medium with serum Download PDF

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Publication number
CN106324249A
CN106324249A CN201510387358.9A CN201510387358A CN106324249A CN 106324249 A CN106324249 A CN 106324249A CN 201510387358 A CN201510387358 A CN 201510387358A CN 106324249 A CN106324249 A CN 106324249A
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albumen
cell
protein
serum
culture fluid
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张丽华
翁叶靖
随志刚
杨开广
张玉奎
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Dalian Institute of Chemical Physics of CAS
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    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
    • G01N33/48Biological material, e.g. blood, urine; Haemocytometers
    • G01N33/50Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
    • G01N33/68Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving proteins, peptides or amino acids
    • G01N33/6803General methods of protein analysis not limited to specific proteins or families of proteins
    • G01N33/6848Methods of protein analysis involving mass spectrometry

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Abstract

The invention belongs to the field of biochemical analysis, and relates to a sample pretreatment method of secretory proteins in culture medium with serum. High abundance protein removing technology and protein fractionation technology are used for enriching secretory proteins, and furthermore mass spectrometry is used for identification. The method has the advantages of simple operation, time saving and high efficiency. The method is used for identification of quantity of secretory proteins in culture medium with serum, and the method compares favourably with serum-free culture technology.

Description

A kind of containing the sample pretreating method of secretory protein in serum free culture system liquid
Technical field
The present invention relates to biochemical analysis field, specifically, be by high-abundance proteins removal technology and Albumen classification technique enrichment secretory protein, and it is carried out mass spectral analysis qualification.
Background technology
Secretory protein refers to the class protein being secreted into extracellular function.Secretory protein includes Many somatomedin and cytokine, wide participation cellular signal transduction, immunne response, the increasing of cell Grow, the vital movement that numerous organisms such as regulation and control of differentiation and apoptosis are important.Secretory protein group deep Enter to study to contribute to us and find the biomarker the most relevant to morbid state, and dividing In sub-level, the generation to disease develops offer theoretical foundation.
It is the grinding of proteomics in recent years for the research of the secretory protein group of different excretory systems Study carefully focus, especially for cancerous cell dissimilar, different phase, there is highly important research meaning Justice.Traditional secretory protein group research strategy overwhelming majority uses the condition of culture of serum-free, to keep away Exempt from the very big ambient interferences that secretory protein itself is caused by high abundance plasma proteins group.But, for For cell, this Hunger stress of serum-free culture can change the secretion behavior of cell self, the most sharp Living cells apoptosis pathway.So, the secretory protein group reflection of qualification is under cell abnormal condition Secretory protein group.In order to solve this difficult problem, Eichelbaum collaboration person develops one Azido compound metabolic marker the strategy by click chemistry enrichment secretory protein, from blood serum medium In identify 325 proper secretory proteins, secretory protein selectivity reaches 71% (Eichelbaum et al.,Nat.Biotechnl.30,2012).But, the process employs nitrine chemical combination Thing metabolic marker with substitute methionine strategy, although the method broken away from serum starvation yoke but But it is the state of a kind of methionine hunger simultaneously for cell, the propagation of the growth of cell can be produced Raw unpredictable impact, it is impossible to reflect the cell under normal cultivation conditions.
Based on this, we have developed the secretory protein sample pretreatment of a kind of direct process serum free culture system liquid Method.Only by culture fluid being carried out the removal of high-abundance proteins and the classification of albumen, just can reach The purpose of Large scale identification secretory protein group, does not affect the normal physiological status of cell simultaneously.
Summary of the invention
For achieving the above object, the technical solution used in the present invention is:
Take the cell culture fluid containing serum, by centrifugation, filtration treatment, then utilize high-abundance proteins successively Removal technology and albumen classification technique process, and it is carried out enzymolysis.
The described cell culture fluid containing serum is containing 1%-30% hyclone and for cell cultivation SILAC culture fluid;Above-mentioned SILAC culture fluid is containing isotope-labeled lysine, and arginine is bright Propylhomoserin, isoleucine, methionine, the cell training of the combination of one or two or more kinds in agedoite Nutrient solution.
Described centrifugal, filtration treatment, is specially the centrifugal force first with 300-700g and removes cell, from The heart time is 1-60 minute;Take supernatant and remove cell debris with the centrifugal force of 2000-5000g again, from The heart time is 1-60 minute, takes the membrane filtration of supernatant 0.1-1.0 μm, takes filtrate.
It is antibody column removal technology or the one of protein balancing technique that described high-abundance proteins removes technology Or two kinds;It is to utilize several immobilized antibody to its specific high abundance egg that antibody column removes technology Realize the purpose that specificity capture reaches to remove in vain;Protein balancing technique is to utilize specific material pair Protein realizes equilibrium, to reduce high-abundance proteins content, improves low-abundance protein content.
Described albumen classification technique is albumen isoelectric point, IP classification technique or the one of molecular weight of albumen classification technique Plant or two kinds.Albumen isoelectric point, IP classification technique is that it is carried out by the isoelectric point, IP character utilizing protein different Separate;Molecular weight of albumen classification technique is that it is separated by the character utilizing protein different molecular weight.
Described enzymolysis is that albumen in the one of trypsin, serine protease or protein incision enzyme or is appointed Anticipate under the effect of two kinds, be peptide fragment by Proteolytic enzyme;The addition of enzyme be 1:1-1:200 (enzyme: albumen, Mass ratio);Enzymatic hydrolysis condition is 20-50 degree Celsius of lower enzymolysis 1-48 hour.
Particularly as follows: first collect cell culture fluid, then it is carried out the slow-revving centrifugal place of the first step Reason (300-700g) is to remove the cell of residual, then carries out the centrifugal treating of second step higher rotation speed (2000-5000g) to remove the cell debris of residual.Then, one is entered with the filter membrane of 0.1-1.0 μm Step removes the cell in culture fluid and cell debris.Then, utilize high-abundance proteins removal technology (anti- Scapus removes technology or protein balancing technique) remove the high-abundance proteins in cell culture fluid, and profit With albumen classification technique (albumen isoelectric point, IP classification technique or molecular weight of albumen classification technique) to process after Culture fluid carry out the classification of albumen.Then, to the albumen of different fractions respectively at trypsin, silk Enzyme is carried out under the effect of any one or more than one the combination of serine protease or protein incision enzyme Solve.Finally, to the peptide fragment flight time class mass spectrum obtained, ion trap class mass spectrum and track trap class matter One or more combination in spectrum carries out mass spectral analysis.
Compared with tradition serum-free culture enrichment secretory protein, the invention have the advantages that
(1) present invention can overcome the serum starvation impact on cell, maintains cell normal physiology shape State;
(2) present invention can reduce the broken to reduce the interference of cell nuclear protein of cell;
(3) legitimate reading of cell secretory protein under the conditions of the present invention can reflect normally.
Accompanying drawing explanation
Fig. 1 is the flow chart of the present invention.
Detailed description of the invention
The present invention presented below two kinds enrichment and the detailed description of the invention of qualification secretory protein.
Embodiment 1
Utilize ProteoMiner equalizer material and Gelfree 8100 albumen classification instrument that SILAC is marked The HeLa cell culture fluid of note realizes enrichment and the qualification of secretory protein.
First collecting the culture fluid of the HeLa cell of SILAC labelling (K6, R10), 500g is centrifuged To remove the cell of residual, take supernatant and carry out the centrifugal cell debris remained with removing of 3000g again.Connect , the filter membrane taking supernatant 0.22 μm carries out filtering to remove further cell debris, and collection flows through Component.Then, ProteoMiner equalizer processes is utilized to flow through component to remove high abundance egg therein White Sync enrichment low-abundance protein, albumen is carried out by the Gelfree 8100 of recycling Expedeon company The classification of molecular weight, and collect each fraction.Then, the albumen in each fraction adds 100 μ L 0.1M 56 degrees Celsius of degeneration reductase 12s hour of dithiothreitol, DTT, then lucifuge adds the iodacetyl of 100 μ L0.2M Amine room temperature alkylated reaction half an hour, it is subsequently added into the ammonium hydrogen carbonate of 1mL 50mM, adds pancreas egg White enzyme (1:50, enzyme: albumen, mass ratio) 37 degrees Celsius is hatched 16 hours, then with desalination post pair Sample desalination, finally carries out nano-ESI-LC-MS/MS mass spectral analysis.
ProteoMiner equalizer processes condition: first the albumen of 200 μ L60mg/ml is flowed through component With 100mg ProteoMiner equalizer material incubated at room under the conditions of 10mM HEPESpH=7.0 2h.After having hatched, flush three times with 10mM HEPES, with 300 μ L eluents (4%SDS, 25mM DTT) under the conditions of 95 DEG C, hatch 15min, then carry out 500g and be centrifuged eluted product. Eluent is the culture fluid after eliminating high-abundance proteins.
Gelfree 8100 albumen staged care condition: according to the operation instruction of instrument, takes 20 μ L SampleBuffer and 10 μ L Running Buffer (producer provides by instrument), two sulfur of 8 μ L 1M Threitol and the 112 pending sample mix of μ L are placed in the sample cell of instrument, the program recommended according to instrument Voltage arranges and sample is carried out classification, respectively 56.5, and 58.5,60.5,62.5,65.5,68.5, Within 73.5,80,90,120 minutes, collect fraction, collect altogether ten fractions.
Embodiment 2
Utilize MARS-14 antibody column and the size exclusion chromatography technology HeLa cell to SILAC labelling Culture fluid realizes enrichment and the qualification of secretory protein.
First collecting the culture fluid of the HeLa cell of SILAC labelling (K6), 500g is centrifugal to remove The cell of residual, takes supernatant and carries out the centrifugal cell debris remained with removing of 3000g again.Then, take The supernatant filter membrane of 0.45 μm carries out filtering to remove further cell debris, and collection flows through component. Then, the process of MARS-14 antibody column is utilized to flow through component to remove high-abundance proteins therein more sharp With size exclusion chromatography post (5 μm,) albumen is carried out the classification of molecular weight, and collect each Fraction.Then, the albumen in each fraction adds the dithiothreitol, DTT 56 degrees Celsius of 100 μ L 0.1M Degeneration reductase 12 hour, then lucifuge to add the iodoacetamide room temperature alkylated reaction half of 100 μ L 0.2M little Time, it is subsequently added into the ammonium hydrogen carbonate of 1mL 50mM, adds trypsin 1:50, enzyme: albumen, Mass ratio) 37 degrees Celsius hatch 16 hours, then with desalination post to sample desalination, finally carry out Nano-ESI-LC-MS/MS mass spectral analysis.
MARS-14 antibody column processes culture fluid: first 20 μ L flow through component and 40 μ LBuffer A (Agilent, 5185-5987) mixes, by liquid chromatographic system, with the flow velocity of 0.125mL/min Flow through antibody column, and collection flows through liquid.Flow through liquid and be the culture fluid after eliminating high-abundance proteins.
Size exclusion chromatography carries out molecular-weight gradation to albumen: 100 μ L are flowed through component 1 × PBS It is diluted 5 times, by liquid chromatographic system, flows through size exclusion color with the flow velocity of 0.3mL/min Spectrum post, and collect 15, the fraction of 17,19,21,23,25,27,29,31,33 minutes, collect altogether ten fractions.
Embodiment 3
Utilize ProteoPrep20 antibody column and the size exclusion chromatography technology HeLa to SILAC labelling Cell culture fluid realizes enrichment and the qualification of secretory protein.
First collecting the culture fluid of the HeLa cell of SILAC labelling (R10), 500g is centrifugal to remove Remove the cell of residual, take supernatant and carry out the centrifugal cell debris remained with removing of 3000g again.Then, The filter membrane taking supernatant 0.22 μm carries out filtering to remove further cell debris, and collection flows through group Point.Then, utilize ProteoPrep20 antibody column to process and flow through component to remove high abundance egg therein In vain, recycling size exclusion chromatography post (5 μm,) albumen is carried out the classification of molecular weight, and Collect each fraction.Then, the albumen in each fraction adds the dithiothreitol, DTT of 100 μ L 0.1M 56 degrees Celsius of degeneration reductase 12s hour, then lucifuge adds the iodoacetamide room temperature alkyl of 100 μ L 0.2M Change and react half an hour, be subsequently added into the ammonium hydrogen carbonate of 1mL 50mM, add trypsin 1:50, Enzyme: albumen, mass ratio) 37 degrees Celsius hatch 16 hours, then with desalination post to sample desalination, After carry out nano-ESI-LC-MS/MS mass spectral analysis.
ProteoPrep20 antibody column processes culture fluid: first 20 μ L flow through component and 40 μ L Buffer A (Agilent, 5185-5987) mixes, by liquid chromatographic system, with the flow velocity of 0.125mL/min Flow through antibody column, and collection flows through liquid.Flow through liquid and be the culture fluid after eliminating high-abundance proteins.
Size exclusion chromatography carries out molecular-weight gradation to albumen: 100 μ L are flowed through component 1 × PBS It is diluted 5 times, by liquid chromatographic system, flows through size exclusion color with the flow velocity of 0.3mL/min Spectrum post, and collect 15, the fraction of 17,19,21,23,25,27,29,31,33 minutes, collect altogether ten fractions.
Embodiment 4
Utilize SuperMix antibody column and Gelfree 8100 albumen classification instrument to SILAC labelling HeLa cell culture fluid realizes enrichment and the qualification of secretory protein.
First collecting the culture fluid of the HeLa cell of SILAC labelling (R6), 500g is centrifugal to remove The cell of residual, takes supernatant and carries out the centrifugal cell debris remained with removing of 3000g again.Then, take The supernatant filter membrane of 0.45 μm carries out filtering to remove further cell debris, and collection flows through component. Then, the process of SuperMix antibody column is utilized to flow through component to remove high-abundance proteins therein more sharp With the Gelfree 8100 of Expedeon company, albumen is carried out the classification of molecular weight, and collects each evaporating Point.Then, the albumen in each fraction adds the dithiothreitol, DTT 56 degrees Celsius change of 100 μ L 0.1M Property reductase 12 hour, then lucifuge adds the iodoacetamide room temperature alkylated reaction half an hour of 100 μ L 0.2M, It is subsequently added into the ammonium hydrogen carbonate of 1mL 50mM, adds trypsin 1:50, enzyme: albumen, matter Amount than) 37 degrees Celsius hatch 16 hours, then with desalination post to sample desalination, finally carry out Nano-ESI-LC-MS/MS mass spectral analysis.
SuperMix antibody column processes culture fluid: first 20 μ L flow through component and 40 μ L Buffer A (Agilent, 5185-5987) mixes, by liquid chromatographic system, with the flow velocity of 0.125mL/min Flow through antibody column, and collection flows through liquid.Flow through liquid and be the culture fluid after eliminating high-abundance proteins.
Gelfree 8100 albumen staged care condition: according to the operation instruction of instrument, takes 20 μ L SampleBuffer and 10 μ L Running Buffer (producer provides by instrument), two sulfur of 8 μ L 1M Threitol and the 112 pending sample mix of μ L are placed in the sample cell of instrument, the program recommended according to instrument Voltage arranges and sample is carried out classification, respectively 56.5, and 58.5,60.5,62.5,65.5,68.5, Within 73.5,80,90,120 minutes, collect fraction, collect altogether ten fractions.
Embodiment 5
Utilize ProteoMiner equalizer material and 3100Offgel Fractionator albumen classification instrument HeLa cell culture fluid to SILAC labelling realizes enrichment and the qualification of secretory protein.
First collecting the culture fluid of the HeLa cell of SILAC labelling (K6), 500g is centrifugal to remove The cell of residual, takes supernatant and carries out the centrifugal cell debris remained with removing of 3000g again.Then, take The supernatant filter membrane of 0.22 μm carries out filtering to remove further cell debris, and collection flows through component. Then, ProteoMiner equalizer processes is utilized to flow through component to remove high-abundance proteins therein simultaneously Enrichment low-abundance protein, albumen isoelectric point, IP is entered by recycling 3100Offgel Fractionator classification instrument The classification of row molecular weight, and collect each fraction.Then, the albumen in each fraction adds 100 μ L 0.1 56 degrees Celsius of degeneration reductase 12s hour of the dithiothreitol, DTT of M, then lucifuge adds the iodine of 100 μ L 0.2M Acetamide room temperature alkylated reaction half an hour, it is subsequently added into the ammonium hydrogen carbonate of 1mL 50mM, adds Trypsin 1:50, enzyme: albumen, mass ratio) 37 degrees Celsius hatch 16 hours, then use desalination Post, to sample desalination, finally carries out nano-ESI-LC-MS/MS mass spectral analysis.
ProteoMiner equalizer processes condition: first the albumen of 200 μ L 60mg/ml is flowed through component With 100mg ProteoMiner equalizer material incubated at room under the conditions of 10mM HEPES pH=7.0 2h.After having hatched, flush three times with 10mM HEPES, with 300 μ L eluents (4%SDS, 25mM DTT) under the conditions of 95 DEG C, hatch 15min, then carry out 500g and be centrifuged eluted product. Eluent is the culture fluid after eliminating high-abundance proteins.
3100Offgel Fractionator albumen staged care condition: according to the operation instruction of instrument, take 2.88mL 1.25 × OFFGEL storing solution (producer provides by instrument) and 0.72mL water, mix with pending sample Closing the sample cell being placed in instrument, use the adhesive tape of pH 3-10, the voltage recommended according to instrument arranges (200 V-1500V) sample is carried out classification in adhesive tape, collect altogether ten fractions.
Embodiment 6
Utilize ProteoPrep20 and 3100Offgel Fractionator albumen classification instrument that SILAC is marked The HeLa cell culture fluid of note realizes enrichment and the qualification of secretory protein.
First collecting the culture fluid of the HeLa cell of SILAC labelling (K6, R10), 500g is centrifuged To remove the cell of residual, take supernatant and carry out the centrifugal cell debris remained with removing of 3000g again.Connect , the filter membrane taking supernatant 0.45 μm carries out filtering to remove further cell debris, and collection flows through Component.Then, ProteoPrep20 process is utilized to flow through component same to remove high-abundance proteins therein Time enrichment low-abundance protein, recycling 3100Offgel Fractionator classification instrument to albumen isoelectric point, IP Carry out the classification of molecular weight, and collect each fraction.Then, the albumen in each fraction adds 100 μ L 56 degrees Celsius of degeneration reductase 12s hour of the dithiothreitol, DTT of 0.1M, then lucifuge adds 100 μ L 0.2M's Iodoacetamide room temperature alkylated reaction half an hour, it is subsequently added into the ammonium hydrogen carbonate of 1mL 50mM, then adds Enter trypsin 1:50, enzyme: albumen, mass ratio) 37 degrees Celsius hatch 16 hours, then with removing Salt plug, to sample desalination, finally carries out nano-ESI-LC-MS/MS mass spectral analysis.
ProteoPrep20 antibody column processes culture fluid: first 20 μ L flow through component and 40 μ L Buffer A (Agilent, 5185-5987) mixes, by liquid chromatographic system, with the flow velocity of 0.125mL/min Flow through antibody column, and collection flows through liquid.Flow through liquid and be the culture fluid after eliminating high-abundance proteins.
3100 Offgel Fractionator albumen staged care conditions: according to the operation instruction of instrument, take 2.88mL 1.25 × OFFGEL storing solution (producer provides by instrument) and 0.72mL water, and wait to locate Reason sample mix is placed in the sample cell of instrument, uses the adhesive tape of pH 3-10, the voltage recommended according to instrument (200V-1500V) is set sample is carried out classification in adhesive tape, collect altogether ten fractions.

Claims (6)

1. one kind contains the sample pretreating method of secretory protein in serum free culture system liquid, it is characterised in that:
Take the cell culture fluid containing serum, by centrifugation, filtration treatment, then utilize high-abundance proteins successively Removal technology and albumen classification technique process, and it is carried out enzymolysis.
The most in accordance with the method for claim 1, it is characterised in that: the described cell containing serum is cultivated Liquid be containing 1%-30% hyclone and for cell cultivate SILAC culture fluid;Above-mentioned SILAC trains Nutrient solution is containing isotope-labeled lysine, arginine, leucine, isoleucine, methionine, The cell culture fluid of the combination of one or two or more kinds in agedoite.
The most in accordance with the method for claim 1, it is characterised in that: described centrifugal, filtration treatment, Being specially the centrifugal force first with 300-700g and remove cell, centrifugation time is 1-60 minute;Take The clear centrifugal force using 2000-5000g again removes cell debris, and centrifugation time is 1-60 minute, takes Clear with the membrane filtration of 0.1-1.0 μm, take filtrate.
The most in accordance with the method for claim 1, it is characterised in that: described high-abundance proteins removes skill Art is one or both of antibody column removal technology or protein balancing technique;Above-mentioned antibody column removes skill Art is to utilize several immobilized antibody that its specific high-abundance proteins realizes specificity capture to reach The purpose removed;Above-mentioned protein balancing technique is to utilize specific material that protein is realized equilibrium, To reduce high-abundance proteins content, improve low-abundance protein content.
The most in accordance with the method for claim 1, it is characterised in that: described albumen classification technique is egg One or both of white isoelectric point, IP classification technique or molecular weight of albumen classification technique;Above-mentioned albumen isoelectric point, IP Classification technique is that it is separated by the isoelectric point, IP character utilizing protein different;Above-mentioned molecular weight of albumen Classification technique is that it is separated by the character utilizing protein different molecular weight.
The most in accordance with the method for claim 1, it is characterised in that: described enzymolysis is that albumen is at pancreas egg Under a kind of or effect of any two kinds of white enzyme, serine protease or protein incision enzyme, by albumen water Solve as peptide fragment;The addition of enzyme is by enzyme: 1:1-1:200 based on albumen quality ratio;Enzymatic hydrolysis condition is 20-50 Degree Celsius lower enzymolysis 1-48 hour.
CN201510387358.9A 2015-07-03 2015-07-03 Sample pretreatment method of secretory proteins in culture medium with serum Pending CN106324249A (en)

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Citations (2)

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Publication number Priority date Publication date Assignee Title
EP2309262A1 (en) * 2009-10-06 2011-04-13 Max-Planck-Gesellschaft zur Förderung der Wissenschaften e.V. Method for quantifying biomolecules
CN104170052A (en) * 2012-04-02 2014-11-26 塞莫费雪科学(不来梅)有限公司 Method and apparatus for improved quantitation by mass spectrometry

Patent Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
EP2309262A1 (en) * 2009-10-06 2011-04-13 Max-Planck-Gesellschaft zur Förderung der Wissenschaften e.V. Method for quantifying biomolecules
CN104170052A (en) * 2012-04-02 2014-11-26 塞莫费雪科学(不来梅)有限公司 Method and apparatus for improved quantitation by mass spectrometry

Non-Patent Citations (3)

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M.COLZANI ET AL.: "Metabolic Labeling and Protein Linearization Technology Allow the Study of Proteins Secreted by Cultured Cells in Serum-Containing Media", 《JOURNAL OF PROTEOME RESEARCH》 *
李贤煜等: "等电聚焦预分离用于肝癌细胞分泌蛋白质组的分级与鉴定", 《色谱》 *
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Application publication date: 20170111