CN105859810A - Closed-ring byproduct I of 1-(2-deoxidatoin-beta-ribofuranose-based)-5-iodine-2-pyrmodone and preparing method of closed-ring byproduct I - Google Patents

Closed-ring byproduct I of 1-(2-deoxidatoin-beta-ribofuranose-based)-5-iodine-2-pyrmodone and preparing method of closed-ring byproduct I Download PDF

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CN105859810A
CN105859810A CN201610242419.7A CN201610242419A CN105859810A CN 105859810 A CN105859810 A CN 105859810A CN 201610242419 A CN201610242419 A CN 201610242419A CN 105859810 A CN105859810 A CN 105859810A
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beta
pyrimidone
deoxidation
iodo
ribofuranosyl
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王晨光
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Shandong Libo Meihua Biological Medicine Technology Co Ltd
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Shandong Libo Meihua Biological Medicine Technology Co Ltd
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    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07HSUGARS; DERIVATIVES THEREOF; NUCLEOSIDES; NUCLEOTIDES; NUCLEIC ACIDS
    • C07H19/00Compounds containing a hetero ring sharing one ring hetero atom with a saccharide radical; Nucleosides; Mononucleotides; Anhydro-derivatives thereof
    • C07H19/02Compounds containing a hetero ring sharing one ring hetero atom with a saccharide radical; Nucleosides; Mononucleotides; Anhydro-derivatives thereof sharing nitrogen
    • C07H19/04Heterocyclic radicals containing only nitrogen atoms as ring hetero atom
    • C07H19/06Pyrimidine radicals
    • C07H19/073Pyrimidine radicals with 2-deoxyribosyl as the saccharide radical
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07HSUGARS; DERIVATIVES THEREOF; NUCLEOSIDES; NUCLEOTIDES; NUCLEIC ACIDS
    • C07H1/00Processes for the preparation of sugar derivatives
    • C07H1/06Separation; Purification

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Abstract

The invention relates to 1-(2-deoxidatoin-beta-ribofuranose-based)-5-iodine-2-pyrmodone, in particular to a closed-ring byproduct I of 1-(2-deoxidatoin-beta-ribofuranose-based)-5-iodine-2-pyrmodone and a preparing method of the closed-ring byproduct I. The XRPD reflection angle of the closed-ring byproduct I reaches characteristic peaks at 11.13 +/-0.2 degrees, 14.54 +/-0.2 degrees, 16.98 +/-0.2 degrees, 19.69 +/-0.2 degrees, 19.87 +/-0.2 degrees, 21.59 +/-0.2 degrees, 23.55 +/-0.2 degrees, 25.61 +/-0.2 degrees, 28.69 +/-0.2 degrees, 34.97 +/-0.2 degrees and 38.43 +/-0.2 degrees. Guidance is provided for studying the stability of 1-(2-deoxidatoin-beta-ribofuranose-based)-5-iodine-2-pyrmodone.

Description

Cyclization by-product I of 1-(2-deoxidation-beta-ribofuranosyl)-5-iodo-2-pyrimidone and preparation method thereof
Technical field
The present invention relates to 1-(2-deoxidation-beta-ribofuranosyl)-5-iodo-2-pyrimidone, be specifically related to a kind of 1-(2-deoxidation-beta-furan Mutter ribosyl) the cyclization by-product I of-5-iodo-2-pyrimidone and preparation method thereof.
Background technology
1-(2-deoxidation-beta-ribofuranosyl)-5-iodo-2-pyrimidone (IPdR) is the precursor of IUdR medicine, initially by as anti- Virus drugs is studied, and is presently believed to be a kind of potential oral TdR radiosensitizer, and IPdR can mix the swollen of fast breeding In oncocyte, the normal structure of fast breeding such as bone marrow and enterocyte also have incorporation.1994, Cheng et al. was nude mice Dorsal sc injection people source colon cancer cell (HCT-116), thus set up tumor model it was confirmed this assumes.IPdR is as list Medicine is used for treating lymphadenomatous I phase in late period clinic and completed (NCT01240577) in 2012, as the 0 of tumour radiotherapy sensitizer Phase clinic completed in NIH in 2013, reached expected results.
IPdR structural formula is as follows:
But, there is many problems in IPdR in terms of stability, particularly in high temperature, aqueous or alcohol system, once drops Solve formation by-product and will affect the using effect of IPdR.The most also find no the report in terms of the IPdR by-product of pass.
Summary of the invention
It is an object of the invention to provide the cyclization by-product I of a kind of 1-(2-deoxidation-beta-ribofuranosyl)-5-iodo-2-pyrimidone, for The stability of research 1-(2-deoxidation-beta-ribofuranosyl)-5-iodo-2-pyrimidone provides and instructs, and present invention simultaneously provides it the easiest OK, it is easy to accomplish preparation method.
The cyclization by-product I of 1-of the present invention (2-deoxidation-beta-ribofuranosyl)-5-iodo-2-pyrimidone, its nuclear magnetic resonance, NMR number According to as follows:
1H NMR (400MHz, DMSO) δ 9.28 (d, J=5.3Hz, 3H), 8.82 (d, J=3.1Hz, 1H), 8.69 (d, J =3.1Hz, 1H), 6.66 (d, J=5.4Hz, 3H), 6.05 (t, J=5.9Hz, 1H), 5.86 (d, J=5.4Hz, 3H), 5.43 (s, 3H), 5.39 5.26 (m, 2H), 5.16 (d, J=4.3Hz, 3H), 4.32 4.18 (m, 7H), 4.01 3.84 (m, 4H), 3.84 3.39 (m, 66H), 3.57 3.39 (m, 60H), 3.49 3.39 (m, 60H), 2.47 2.30 (m, 4H), 2.16 (dtd, J=9.8, 6.6,3.3Hz,4H)。
Angle of reflection 2 θ of its X-ray powder diffraction figure at 11.13 ± 0.2 °, 14.54 ± 0.2 °, 16.98 ± 0.2 °, 19.69 ± 0.2 °, 19.87 ± 0.2 °, 21.59 ± 0.2 °, 23.55 ± 0.2 °, 25.61 ± 0.2 °, 28.69 ± 0.2 °, 34.97 ± 0.2 °, at 38.43 ± 0.2 ° There is characteristic peak.
The preparation method of the cyclization by-product I of described 1-(2-deoxidation-beta-ribofuranosyl)-5-iodo-2-pyrimidone is divided into following two Kind:
One, first method:
1-(2-deoxidation-beta-ribofuranosyl)-5-iodo-2-pyrimidone is dissolved in solvent, stirring, filters, take filtrate and be positioned over tool Have in the container that the sealed membrane of passage seals, be placed under room temperature condition and volatilize, separate out solid.
Wherein:
Solvent is the mixture of acetonitrile and methanol, and both volume ratios are 1:3.
1-(2-deoxidation-beta-ribofuranosyl)-5-iodo-2-pyrimidone is 3:0.2~0.3 with the ratio of solvent, 1-(2-deoxidation-beta- Ribofuranosyl)-5-iodo-2-pyrimidone quality is in terms of mg, and solvent volume is in terms of ml.
Whipping temp 40~60 DEG C, mixing time 1~3h.
Two, second method:
Being dissolved in solvent by 1-(2-deoxidation-beta-ribofuranosyl)-5-iodo-2-pyrimidone, filter, under stirring, in filtrate, dropping is anti- Solvent separates out solid, or is transferred under room temperature condition separate out solid by the filtrate separated out without solid after dropping anti-solvent.
Wherein:
Solvent is methanol.
Anti-solvent is ethyl acetate, butanone or methyl tertiary butyl ether(MTBE).
1-(2-deoxidation-beta-ribofuranosyl)-5-iodo-2-pyrimidone is 1:0.05~0.1 with the ratio of solvent, 1-(2-deoxidation-beta- Ribofuranosyl)-5-iodo-2-pyrimidone quality is in terms of mg, and solvent volume is in terms of ml.
Solvent is 1~2:5~10 with the volume ratio of anti-solvent.
Beneficial effects of the present invention is as follows:
The present invention prepares cyclization by-product I, and the stability for research 1-(2-deoxidation-beta-ribofuranosyl)-5-iodo-2-pyrimidone carries Having supplied to instruct, the preparation method of the present invention is simple, it is easy to accomplish.
Accompanying drawing explanation
Fig. 1 is the nuclear magnetic resonance, NMR figure of (2-deoxidation-beta-the ribofuranosyl)-5-iodo-2-pyrimidone cyclization by-product I of 1-in embodiment 1;
Fig. 2 is the x-ray powder of (2-deoxidation-beta-the ribofuranosyl)-5-iodo-2-pyrimidone cyclization by-product I of 1-in embodiment 1 Diffraction pattern;
Fig. 3 is the nuclear magnetic resonance, NMR figure of 1-(2-deoxidation-beta-ribofuranosyl)-5-iodo-2-pyrimidone crystal formation A;
Fig. 4 is the X-ray powder diffraction figure of 1-(2-deoxidation-beta-ribofuranosyl)-5-iodo-2-pyrimidone crystal formation A;
Fig. 5 is the x-ray powder of (2-deoxidation-beta-the ribofuranosyl)-5-iodo-2-pyrimidone cyclization by-product I of 1-in embodiment 4 Diffraction pattern;
Fig. 6 is the x-ray powder of (2-deoxidation-beta-the ribofuranosyl)-5-iodo-2-pyrimidone cyclization by-product I of 1-in embodiment 5 Diffraction pattern;
Fig. 7 is the x-ray powder of (2-deoxidation-beta-the ribofuranosyl)-5-iodo-2-pyrimidone cyclization by-product I of 1-in embodiment 6 Diffraction pattern.
Detailed description of the invention
Below in conjunction with embodiment, the present invention is described further.
Embodiment 1
The preparation method of the cyclization by-product I of described 1-(2-deoxidation-beta-ribofuranosyl)-5-iodo-2-pyrimidone:
Weigh 1-(2-deoxidation-beta-the ribofuranosyl)-5-iodo-2-pyrimidone of 15mg in 3ml bottle, add the second of 1.0ml Nitrile and the mixture of methanol, wherein, acetonitrile is 1:3 with the volume ratio of methanol, after being placed in 50 DEG C of stirring 2h, crosses leaching clarification Liquid, equipped with the bottle of settled solution and pricks 5~6 apertures with ParafilmTM above, places and the most slowly volatilizees.3 After it, collecting gained solid, and carry out nuclear magnetic resonance, NMR, X-ray powder diffraction XRPD, result is as shown in Figure 1 and Figure 2.
The nuclear magnetic resonance data of cyclization by-product I is as follows:
1H NMR (400MHz, DMSO) δ 9.28 (d, J=5.3Hz, 3H), 8.82 (d, J=3.1Hz, 1H), 8.69 (d, J =3.1Hz, 1H), 6.66 (d, J=5.4Hz, 3H), 6.05 (t, J=5.9Hz, 1H), 5.86 (d, J=5.4Hz, 3H), 5.43 (s, 3H), 5.39 5.26 (m, 2H), 5.16 (d, J=4.3Hz, 3H), 4.32 4.18 (m, 7H), 4.01 3.84 (m, 4H), 3.84 3.39 (m, 66H), 3.57 3.39 (m, 60H), 3.49 3.39 (m, 60H), 2.47 2.30 (m, 4H), 2.16 (dtd, J=9.8, 6.6,3.3Hz,4H).
The X-ray powder diffraction data of cyclization by-product I are as shown in table 1 below:
The XRPD data peak of table 1 cyclization by-product I
Meanwhile, the crystal formation (named crystal formation A) to 1-(2-deoxidation-beta-ribofuranosyl)-5-iodo-2-pyrimidone original state Carry out nuclear magnetic resonance, NMR, X-ray powder diffraction, as shown in Figure 3,4.
Crystal formation A nuclear magnetic resonance data is as follows:
1H NMR (400MHz, DMSO) δ 8.75 (d, J=3.1Hz, 1H), 8.63 (d, J=3.1Hz, 1H), 5.98 (t, J= 5.9Hz, 1H), 5.33 5.18 (m, 2H), 4.28 4.16 (m, 1H), 3.88 (q, J=3.4Hz, 1H), 3.64 (dddd, J=45.7, 12.0,4.8,3.4Hz, 2H), 2.34 (ddd, J=13.4,6.3,5.1Hz, 1H), 2.10 (dt, J=13.4,5.9Hz, 1H).
The X-ray powder diffraction data of crystal formation A are as shown in table 2 below:
The XRPD data peak of table 2 crystal formation A
By Fig. 1-4 and table 1-2 it is clear that crystal formation A and cyclization by-product I has obvious difference.
Embodiment 2
The preparation method of the cyclization by-product I of described 1-(2-deoxidation-beta-ribofuranosyl)-5-iodo-2-pyrimidone:
Weigh 1-(2-deoxidation-beta-the ribofuranosyl)-5-iodo-2-pyrimidone of 15mg in 3ml bottle, add the second of 1.5ml Nitrile and the mixture of methanol, wherein, acetonitrile is 1:3 with the volume ratio of methanol, after being placed in 40 DEG C of stirring 3h, crosses leaching clarification Liquid, equipped with the bottle of settled solution and pricks 5~6 apertures with ParafilmTM above, places and the most slowly volatilizees, and 3 After it, collect gained solid.
Embodiment 3
The preparation method of the cyclization by-product I of described 1-(2-deoxidation-beta-ribofuranosyl)-5-iodo-2-pyrimidone:
Weigh 1-(2-deoxidation-beta-the ribofuranosyl)-5-iodo-2-pyrimidone of 15mg in 3ml bottle, add the second of 1.0ml Nitrile and the mixture of methanol, wherein, acetonitrile is 1:3 with the volume ratio of methanol, after being placed in 60 DEG C of stirring 1h, crosses leaching clarification Liquid, equipped with the bottle of settled solution and pricks 5~6 apertures with ParafilmTM above, places and the most slowly volatilizees.3 After it, collect gained solid.
Embodiment 4
The preparation method of the cyclization by-product I of described 1-(2-deoxidation-beta-ribofuranosyl)-5-iodo-2-pyrimidone:
Weigh 1-(2-deoxidation-beta-the ribofuranosyl)-5-iodo-2-pyrimidone of 20mg in 3ml bottle, add the first of 2.0ml Alcohol, filters, and drips ethyl acetate 10ml under stirring in filtrate, and the filtrate separated out without solid after dropping anti-solvent is transferred to room Solid is separated out under the conditions of temperature.And carrying out X-ray powder diffraction XRPD detection, result is as shown in Figure 5.Cyclization by-product I penetrates Line powder diffraction data is as shown in table 3 below:
The XRPD data peak of table 3 cyclization by-product I
2theta D is spaced Intensity %
6.615447 13.36145 7.60
11.131700 7.94865 22.47
12.506250 7.07794 7.08
14.543730 6.09063 10.68
16.984690 5.22042 13.20
19.693930 4.50795 18.95
19.871080 4.46816 9.69
21.586430 4.11682 100.00
22.577780 3.93826 7.62
23.553770 3.77723 53.30
24.543490 3.62711 1.25
25.605110 3.47908 7.04
26.659060 3.34389 1.96
27.150960 3.28441 1.86
28.687770 3.11187 13.74
31.893100 2.80606 6.05
32.529980 2.75256 4.36
32.918160 2.72098 4.23
33.911620 2.64351 1.39
34.973270 2.56566 6.28
36.434470 2.46605 4.56
37.600080 2.39224 1.63
38.194910 2.35634 4.00
38.433460 2.34226 4.50
Embodiment 5
The preparation method of the cyclization by-product I of described 1-(2-deoxidation-beta-ribofuranosyl)-5-iodo-2-pyrimidone:
Weigh 1-(2-deoxidation-beta-the ribofuranosyl)-5-iodo-2-pyrimidone of 20mg in 3ml bottle, add the first of 2.0ml Alcohol, filters, and drips butanone 10ml under stirring in filtrate, and the filtrate separated out without solid after dropping anti-solvent is transferred to room temperature bar Solid is separated out under part.And carrying out X-ray powder diffraction XRPD detection, result is as shown in Figure 6.Cyclization by-product I ray Powder diffraction data is as shown in table 4 below:
The XRPD data peak of table 4 cyclization by-product I
Embodiment 6
The preparation method of the cyclization by-product I of described 1-(2-deoxidation-beta-ribofuranosyl)-5-iodo-2-pyrimidone:
Weigh 1-(2-deoxidation-beta-the ribofuranosyl)-5-iodo-2-pyrimidone of 20mg in 3ml bottle, add the first of 2.0ml Alcohol, filters, and drips methyl tertiary butyl ether(MTBE) 10ml, separate out solid under stirring in filtrate.And carry out X-ray powder diffraction XRPD Detection, result is as shown in Figure 7.Cyclization by-product I ray powder diffraction data is as shown in table 5 below:
The XRPD data peak of table 5 cyclization by-product I
2theta D is spaced Intensity %
11.119020 7.95769 28.17
14.521190 6.10004 18.69
16.954950 5.22951 30.19
18.952840 4.68251 5.58
19.700490 4.50647 29.63
21.240600 4.18306 33.94
21.583060 4.11746 100.00
23.555410 3.77697 38.57
24.612870 3.61704 54.47
25.602700 3.47941 9.18
26.817310 3.32451 27.82
27.215830 3.27673 44.87
28.683420 3.11233 19.59
32.548150 2.75106 9.19
35.200240 2.54963 3.59

Claims (12)

1. the cyclization by-product I of 1-(2-deoxidation-beta-ribofuranosyl)-5-iodo-2-pyrimidone, it is characterised in that: its nuclear-magnetism Resonance data is as follows:
1H NMR (400MHz, DMSO) δ 9.28 (d, J=5.3Hz, 3H), 8.82 (d, J=3.1Hz, 1H), 8.69 (d, J =3.1Hz, 1H), 6.66 (d, J=5.4Hz, 3H), 6.05 (t, J=5.9Hz, 1H), 5.86 (d, J=5.4Hz, 3H), 5.43 (s, 3H), 5.39 5.26 (m, 2H), 5.16 (d, J=4.3Hz, 3H), 4.32 4.18 (m, 7H), 4.01 3.84 (m, 4H), 3.84 3.39 (m, 66H), 3.57 3.39 (m, 60H), 3.49 3.39 (m, 60H), 2.47 2.30 (m, 4H), 2.16 (dtd, J=9.8, 6.6,3.3Hz,4H)。
The cyclization by-product I of 1-the most according to claim 1 (2-deoxidation-beta-ribofuranosyl)-5-iodo-2-pyrimidone, its Be characterised by: angle of reflection 2 θ of its X-ray powder diffraction figure at 11.13 ± 0.2 °, 14.54 ± 0.2 °, 16.98 ± 0.2 °, 19.69 ± 0.2 °, 19.87 ± 0.2 °, 21.59 ± 0.2 °, 23.55 ± 0.2 °, 25.61 ± 0.2 °, 28.69 ± 0.2 °, 34.97 ± 0.2 °, at 38.43 ± 0.2 ° There is characteristic peak.
3. the system of the cyclization by-product I of 1-(2-deoxidation-beta-the ribofuranosyl)-5-iodo-2-pyrimidone described in a claim 1 Preparation Method, it is characterised in that: 1-(2-deoxidation-beta-ribofuranosyl)-5-iodo-2-pyrimidone is dissolved in solvent, stirring, filters, Take in the container that filtrate is positioned over the sealed membrane sealing with passage, be placed under room temperature condition and volatilize, separate out solid.
The system of the cyclization by-product I of 1-the most according to claim 3 (2-deoxidation-beta-ribofuranosyl)-5-iodo-2-pyrimidone Preparation Method, it is characterised in that: solvent is the mixture of acetonitrile and methanol.
The system of the cyclization by-product I of 1-the most according to claim 4 (2-deoxidation-beta-ribofuranosyl)-5-iodo-2-pyrimidone Preparation Method, it is characterised in that: acetonitrile is with the mixture of methanol, and both volume ratios are 1:3.
The system of the cyclization by-product I of 1-the most according to claim 3 (2-deoxidation-beta-ribofuranosyl)-5-iodo-2-pyrimidone Preparation Method, it is characterised in that: 1-(2-deoxidation-beta-ribofuranosyl)-5-iodo-2-pyrimidone is 3:0.2~0.3 with the ratio of solvent, -5-iodo-2-pyrimidone quality is in terms of mg for 1-(2-deoxidation-beta-ribofuranosyl), and solvent volume is in terms of ml.
The system of the cyclization by-product I of 1-the most according to claim 3 (2-deoxidation-beta-ribofuranosyl)-5-iodo-2-pyrimidone Preparation Method, it is characterised in that: whipping temp 40~60 DEG C, mixing time 1~3h.
8. the system of the cyclization by-product I of 1-(2-deoxidation-beta-the ribofuranosyl)-5-iodo-2-pyrimidone described in a claim 1 Preparation Method, it is characterised in that: 1-(2-deoxidation-beta-ribofuranosyl)-5-iodo-2-pyrimidone is dissolved in solvent, filters, stirring The lower anti-solvent that drips in filtrate separates out solid, or the filtrate separated out without solid after dropping anti-solvent is transferred under room temperature condition Separate out solid.
The system of the cyclization by-product I of 1-the most according to claim 8 (2-deoxidation-beta-ribofuranosyl)-5-iodo-2-pyrimidone Preparation Method, it is characterised in that: solvent is methanol.
The cyclization by-product I's of 1-the most according to claim 8 (2-deoxidation-beta-ribofuranosyl)-5-iodo-2-pyrimidone Preparation method, it is characterised in that: anti-solvent is ethyl acetate, butanone or methyl tertiary butyl ether(MTBE).
The cyclization by-product I's of 11. 1-according to claim 8 (2-deoxidation-beta-ribofuranosyl)-5-iodo-2-pyrimidone Preparation method, it is characterised in that: the ratio of 1-(2-deoxidation-beta-ribofuranosyl)-5-iodo-2-pyrimidone and solvent be 1:0.05~ -5-iodo-2-pyrimidone quality is in terms of mg for 0.1,1-(2-deoxidation-beta-ribofuranosyl), and solvent volume is in terms of ml.
The cyclization by-product I's of 12. 1-according to claim 8 (2-deoxidation-beta-ribofuranosyl)-5-iodo-2-pyrimidone Preparation method, it is characterised in that: solvent is 1~2:5~10 with the volume ratio of anti-solvent.
CN201610242419.7A 2016-04-19 2016-04-19 Closed-ring byproduct I of 1-(2-deoxidatoin-beta-ribofuranose-based)-5-iodine-2-pyrmodone and preparing method of closed-ring byproduct I Pending CN105859810A (en)

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Citations (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US4895937A (en) * 1982-01-05 1990-01-23 The Research Foundation Of State University Of New York 5-ioso-2-pyrimidinone nucleoside

Patent Citations (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US4895937A (en) * 1982-01-05 1990-01-23 The Research Foundation Of State University Of New York 5-ioso-2-pyrimidinone nucleoside

Non-Patent Citations (1)

* Cited by examiner, † Cited by third party
Title
SIMON M. N. EFANGE,等: "Synthesis and Biological Activities of 2-Pyrimidinone Nucleosides. 2. 5-Halo-2-pyrimidinone 2’-Deoxyribonucleosides", 《J. MED. CHEM.》 *

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Application publication date: 20160817