CN105646655A - Specific peptide fragment group method for identification of Holothuria mexicana - Google Patents

Specific peptide fragment group method for identification of Holothuria mexicana Download PDF

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CN105646655A
CN105646655A CN201510968453.8A CN201510968453A CN105646655A CN 105646655 A CN105646655 A CN 105646655A CN 201510968453 A CN201510968453 A CN 201510968453A CN 105646655 A CN105646655 A CN 105646655A
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seqidno
polypeptide
holothuria mexicana
holothuria
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CN105646655B (en
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张鸿伟
张晓梅
王妍婷
赵雪
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Qingdao Customs Technology Center
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    • G01N33/68Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving proteins, peptides or amino acids
    • G01N33/6803General methods of protein analysis not limited to specific proteins or families of proteins
    • G01N33/6848Methods of protein analysis involving mass spectrometry
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
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    • G01N2333/435Assays involving biological materials from specific organisms or of a specific nature from animals; from humans
    • G01N2333/43504Assays involving biological materials from specific organisms or of a specific nature from animals; from humans from invertebrates

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Abstract

The invention relates to a specific peptide fragment group method for identification of Holothuria mexicana, and a contrast polypeptide group for the identification of Holothuria mexicana by mass spectrometry. The polypeptide has a sequence of SEQ ID NO. 1-6; the peptide fragment is unique in Holothuria Mexicana and does not express in other species.

Description

A kind of method using specificity peptide section group to differentiate Holothuria mexicana
Technical field
The invention belongs to biological technical field, specifically, it relates to a kind of method using specificity peptide section group to differentiate Holothuria mexicana (Holothuriamexicana).
Background technology
Sea cucumber is rich in acid mucopolysaccharide, and human body has the effects such as immunomodulator, anticoagulation, control blood sugar and reducing blood-fat. So, sea cucumber enjoys the good reputation of " nutrition treasure-house ", and modern is described as sea cucumber " first of seafood delights eight treasure ".
Sea cucumber is subordinate to Echinodermata (Echinodermata), trip is at subphylum (Eleutherozoa), sea cucumber guiding principle (Holothuroidea), it it is the general name of a big class invertebrates in ocean, kind is more than 1400 kinds, belonging to 160 genus, be distributed in the vast marine site in tideland and seabed, ocean, wherein marine site, torrid zone kind is enriched.
The sea cucumber of different varieties is compared, some glycosaminoglycan content height, is beneficial to by cardiovascular and cerebrovascular; Some saponin content height, to anticancer useful. Sea cucumber is the same with ginseng, if saponin content height, then pharmaceutical use height, but possibility smell bad; And some sea cucumber protein content height, such as eggplant ginseng and stichopus japonicus, it is possible to be used on hotel and family's dining table in a large number, provide the nutritive substance needed for health to potein deficiency, malnutritive crowd.
Holothuria mexicana (Holothuriamexicana) is the common sea cucumber kind in american torrid zone marine site, its nutritive value, pharmaceutical use and the sea cucumber kind originating in marine site, China temperate zone have very big difference, therefore, commercially to the differentiation of related products with differentiate just to seem very important.
The method especially effectively identifying sea cucumber kind owing to lacking at present, differentiate that the method for sea cucumber kind is also just by traditional visual inspection, lack the support of state of the art, cause many bad businessman to adulterate, pass a fake product off as a genuine one deception human consumer, it is thus desirable to the method for the qualification sea cucumber of a kind of efficiently and accurately.
Summary of the invention
The polypeptide of Holothuria mexicana (Holothuriamexicana) IsostichopusBadionotus has been studied by the present invention, establishes the technology differentiated by Holothuria mexicana from polypeptide level, has filled up the blank that domestic and international sea cucumber differentiates.
First the present invention relates to one group for detecting the polypeptide of Holothuria mexicana alone or in combination, and the sequence of described polypeptide is:
SEQIDNO.1:AGIALSDNFVK;
SEQIDNO.2:AQQTAENEMANLQR;
SEQIDNO.3:DAAEAAMK;
SEQIDNO.4:LTVTEEELQR;
SEQIDNO.5:DVYTPSGYTLDR;
SEQIDNO.6:YLTADMYAR.
The present invention also relates to a kind of method detecting Holothuria mexicana, and described method comprises the steps:
(1) sample to be tested is carried out mass spectrum pre-treatment, obtains polypeptide filtrate to be measured:
(2) the polypeptide composition of sample to be tested is checked by mass spectroscopy, the Holothuria mexicana composition in analyzing samples.
Described mass spectrum pre-treatment step is as follows:
(1) take the 1g sea cucumber powdered state of sample homogeneous, add 10mL protein extract (8M urea, 50mMNH4HCO3) concussion extraction albumen, high-speed low temperature centrifugal (20000r/min), gets supernatant liquor 200ul and transfers in 1mlEP pipe;
(2) get 2 �� L1mol/LDTT (0.154g disulfide group threitol DTT is dissolved in 1mL deionized water) and join in the 100 above-mentioned protein solutions of �� L 37 DEG C of reactions 1 hour;
(3) (accurately taking 0.185g iodo-acetamide IAA is dissolved in 1mL deionized water to get the IAA that 10 �� L now join, the IAA mother liquor being configured to 1mol/L is for subsequent use, configuration process needs lucifuge, matching while using) join in the above-mentioned reaction solution being cooled to room temperature, room temperature lucifuge reacts 1 hour;
(4) 10K filter membrane 20000g ultrafiltration 30 minutes is adopted, it may also be useful to 200 �� L50mmol/L ammonium bicarbonate solns are transferred in new EP pipe after repeatedly rinsing filter membrane upper strata 3 times;
(5) add 200 �� L ammonium bicarbonate solns again and repeat this step, merge solution and complete protein extraction under film;
(6) get 5ulTrypsin enzyme solution (the Trypsin enzyme solution of 1 �� g/ �� L) and join in above-mentioned protein solution 37 DEG C of enzymolysis 16-18 hour;
(7) adopt 10K filter membrane 14000g ultrafiltration 20 minutes, collect the peptide section filtrate of lower floor, treat machine testing.
Described mass spectroscopy is detected as, and adopts ABSCIEX5600 detections,
Mobile phase A: 0.1% formic acid-acetonitrile, Mobile phase B: 0.1% formic acid-water,
Flow velocity: 0.25mL/min,
TOF sweep limit: 350-1500Da,
Positive ion reaction pattern, GS1:35, GS2:45, CurtainGas:35, ISVF:5500, TEM:500, DP:100, CE:10.
Holothuria mexicana composition in described analyzing samples is, by the mass spectrogram of each bar specific polypeptide of the mass spectral results of testing sample contrast SEQIDNO.1��6, when the mass spectrometric detection spectrogram of each bar specific polypeptide of SEQIDNO.1��6 occurs, can judge that this tissue samples is Holothuria mexicana sample.
Accompanying drawing explanation
Fig. 1, AGIALSDNFVK be peptide section fracture on AB5600
Fig. 2, the AGIALSDNFVK mass spectrum in Holothuria mexicana
Fig. 3, AQQTAENEMANLQR be peptide section fracture on AB5600
Fig. 4, the AQQTAENEMANLQR mass spectrum in Holothuria mexicana
Fig. 5, DAAEAAMK be peptide section fracture on AB5600
Fig. 6, the DAAEAAMK mass spectrum in Holothuria mexicana
Fig. 7, LTVTEEELQR be peptide section fracture on AB5600
Fig. 8, the LTVTEEELQR mass spectrum in Holothuria mexicana
Fig. 9, DVYTPSGYTLDR be peptide section fracture on AB5600
Figure 10, the DVYTPSGYTLDR mass spectrum in Holothuria mexicana
Figure 11, YLTADMYAR be peptide section fracture on AB5600
Figure 12, the YLTADMYAR mass spectrum in Holothuria mexicana
Embodiment
Embodiment 1, the sequence source of specific polypeptide and comparison information
1. the source of the polypeptide A GIALSDNFVK that Holothuria mexicana is exclusive
The exclusive polypeptide A GIALSDNFVK of Holothuria mexicana comes from albumen glyceraldehyde-3-phosphatedehydrogenase, partial [Apostichopusjaponicus], its Accesionnumber on NCBI is gi | 334821165, shown in the following SEQIDNO.7 of sequence, analyze and find that AGIALNENFVK the 6th Asn has been mutated into Ser, 7th Glu has been mutated into Asp, obtains polypeptide A GIALSDNFVK. Through NCBIblast comparison, although it is consistent with it to find that there is the species such as plant, bacterium, but contrast stichopus japonicus, Haiti melon, U.S.'s meat ginseng, Mexico's ginseng, polypeptide A GIALSDNFVK is that Holothuria mexicana is exclusive:
SEQIDNO.7:
ATQKTVDGPSAKKWRDGRGAAQNIIPASTGAAKAVGKVIPDLNGKLTGMAFRVPVPD VSVVDLTVRLKKKASYDDIKAVIKKAASSTSLQSILGYTEDQVVSQDFRGDTRSSIFDAKAGIALNENFVKLVSWYDNEYGYSHRVIDLILYMAKK
Fig. 1 is AGIALSDNFVK peptide section fracture on AB5600
Fig. 2 is the mass spectrum of AGIALSDNFVK in Holothuria mexicana,
Its parent ion is 567.811,
Daughter ion is respectively: 893.473,822.436,709.352 and 622.320.
2. polypeptide A QQTAENEMANLQR, DAAEAAMK, LTVTEEELQR that Holothuria mexicana is exclusive originates
Exclusive polypeptide A QQTAENEMANLQR, DAAEAAMK, the LTVTEEELQR of Holothuria mexicana all comes from albumen tropomyosin [Apostichopusjaponicus], its Accesionnumber on NCBI is gi | 302340969, shown in the following SEQIDNO.8 of sequence, analyze and find that AQQTAEEEMANLQR the 7th Glu has been mutated into Asn, obtain polypeptide A QQTAENEMANLQR; DVAEASMK the 2nd Val has been mutated into Ala, and the 6th Ser has been mutated into Ala, obtains polypeptide DAAEAAMK; LTVTEEELAR the 9th Ala has been mutated into Gln, obtains polypeptide LTVTEEELQR; Through NCBIblast comparison, although to find that there is bacterium consistent with it for polypeptide DAAEAAMK, but contrast stichopus japonicus, Haiti melon, U.S.'s meat ginseng, Mexico's ginseng, polypeptide DAAEAAMK is that Holothuria mexicana is exclusive; Polypeptide A QQTAENEMANLQR, LTVTEEELQR do not find that species any with other are consistent, are the polypeptide that Holothuria mexicana is exclusive:
SEQIDNO.8:
MDTIKKKLSQLKADKEKALDEKDVAEASMKEAMERVEQVNDENKELQTRIKQLETELDDTSEKLNTTVIKCEAAEKAQQTAEEEMANLQRKLQLTEEELSRSEERVADLQSKYTDIEQSSEENERQRKVLESRSAADDERMSELETQVMSSKTSLEDSDRKYDEASRKLTVTEEELARSEERSAAFESSLSQMKEELHQLHNNVKSLEAQEEKFTENEEMYEKKVRDLEDKLKVAEDRADIAEESLKSLKTSLDQLEDELMIEKEKVREMTEEMERTIQELNFEV
Adopt ABSCIEX5600 mass spectrographs (AB5600) detect fracture and the mass spectrum of target peptide section
Fig. 3 is AQQTAENEMANLQR peptide section fracture on AB5600
Fig. 4 is the mass spectrum of AQQTAENEMANLQR in Holothuria mexicana,
Its parent ion is 802.378,
Daughter ion is respectively: 1175.547,975.468,861.425 and 872.375.
Fig. 5 is DAAEAAMK peptide section fracture on AB5600
Fig. 6 is the mass spectrum of DAAEAAMK in Holothuria mexicana,
Its parent ion is 403.689,
Daughter ion is respectively: 691.344,620.307,549.270 and 420.228.
Fig. 7 is LTVTEEELQR peptide section fracture on AB5600
Fig. 8 is the mass spectrum of LTVTEEELQR in Holothuria mexicana,
Its parent ion is 609.322,
Daughter ion is respectively: 1003.505,904.437,803.389 and 674.347.
3. the source of polypeptide DVYTPSGYTLDR, YLTADMYAR that Holothuria mexicana is exclusive
Exclusive polypeptide DVYTPSGYTLDR, the YLTADMYAR of Holothuria mexicana comes from albumen argininekinase [Apostichopusjaponicus], its Accesionnumber on NCBI is gi | 4586462, shown in the following SEQIDNO.9 of sequence, analyze and find that DVATPSGYTLDR the 3rd Ala has been mutated into Tyr, obtain polypeptide DVYTPSGYTLDR; YLTADMYAK the 9th Lys has been mutated into Arg, obtains polypeptide YLTADMYAR. Through NCBIblast comparison, polypeptide DVYTPSGYTLDR, YLTADMYAR do not find that species any with other are consistent, are the polypeptide that Holothuria mexicana is exclusive:
SEQIDNO.9:
MANLNQKKYPAKDDFPNFEGHKSLLSKYLTADMYAKLRDVATPSGYTLDRAIQNGVDNPDFHLGLLAGDEETYTVFADLFDPVIEEYHNGFKKTDNHKTDLDASKILDDVLDPAYVISSRVRTGRNIRGMALSPHVCRSERRAIEKMVSEALNSLAADLKGKYYSLMKMDEKTQQQLIDDHFLFDRPVSRHFTSGGMARDFPDGRGIWHNDKKNFLVWINEEDHTRIISMQMGGNMKEVFERFTRGLTEVEKHIKDKTGKEFMKNDHLGFVLTCPSNLGTGVRCSVHAKLPHMAKDKRFEEICTKMRLQKRGTSGEFTESVGGVYDISNLDRLGSSEVEQVNCVIKGVKVLIEMEKKLEKGESIDDLVPK
Fig. 9 is DVYTPSGYTLDR peptide section fracture on AB5600
Figure 10 is the mass spectrum of DVYTPSGYTLDR in Holothuria mexicana,
Its parent ion is 693.830,
Daughter ion is respectively: 1172.558,1009.495,908.447 and 811.395.
Figure 11 is YLTADMYAR peptide section fracture on AB5600
Figure 12 is the mass spectrum of YLTADMYAR in Holothuria mexicana,
Its parent ion is 552.263,
Daughter ion is respectively: 940.456,827.372,726.324 and 655.287.
Embodiment 2, sea cucumber sample process and detecting step
The step that sea cucumber sample to be measured is analyzed is comprised
(1) Sample pretreatment step:
(1) take the 1g sea cucumber powdered state of sample homogeneous, add 10mL protein extract (8M urea, 50mMNH4HCO3) concussion extraction albumen, high-speed low temperature centrifugal (20000r/min), gets supernatant liquor 200ul and transfers in 1mlEP pipe;
(2) get 2 �� L1mol/LDTT (0.154g disulfide group threitol DTT is dissolved in 1mL deionized water) and join in the 100 above-mentioned protein solutions of �� L 37 DEG C of reactions 1 hour;
(3) (accurately taking 0.185g iodo-acetamide IAA is dissolved in 1mL deionized water to get the IAA that 10 �� L now join, the IAA mother liquor being configured to 1mol/L is for subsequent use, configuration process needs lucifuge, matching while using) join in the above-mentioned reaction solution being cooled to room temperature, room temperature lucifuge reacts 1 hour;
(4) 10K filter membrane 20000g ultrafiltration 30 minutes is adopted, it may also be useful to 200 �� L50mmol/L ammonium bicarbonate solns are transferred in new EP pipe after repeatedly rinsing filter membrane upper strata 3 times;
(5) add 200 �� L ammonium bicarbonate solns again and repeat this step, merge solution and complete protein extraction under film;
(6) get 5ulTrypsin enzyme solution (the Trypsin enzyme solution of 1 �� g/ �� L) and join in above-mentioned protein solution 37 DEG C of enzymolysis 16-18 hour;
(7) adopt 10K filter membrane 14000g ultrafiltration 20 minutes, collect the peptide section filtrate of lower floor, treat machine testing.
(2) upper machine testing,
Adopt ABSCIEX5600 detections,
Mobile phase A: 0.1% formic acid-acetonitrile, Mobile phase B: 0.1% formic acid-water,
Flow velocity: 0.25mL/min,
TOF sweep limit: 350-1500Da,
Positive ion reaction pattern, GS1:35, GS2:45, CurtainGas:35, ISVF:5500, TEM:500, DP:100, CE:10.
The mass spectrogram of each bar specific polypeptide in detected result comparative example 1, when going out mass spectrometric detection spectrogram described in current embodiment 1, can judge that this tissue samples is Holothuria mexicana sample.
Through further qualification, described peptide section is the proprietary peptide section of Holothuria mexicana, and at other stichopus japonicus, Thelenota ananas (Jaeger)�� etc., different sea cucumber product are all has no expression.

Claims (5)

1. one group is used for separately or the polypeptide of arbitrary combination detection Holothuria mexicana (Holothuriamexicana), and the sequence of described polypeptide is:
SEQIDNO.1:AGIALSDNFVK;
SEQIDNO.2:AQQTAENEMANLQR;
SEQIDNO.3:DAAEAAMK;
SEQIDNO.4:LTVTEEELQR;
SEQIDNO.5:DVYTPSGYTLDR;
SEQIDNO.6:YLTADMYAR.
2. detecting a method for Holothuria mexicana, described method comprises the steps:
(1) sample to be tested is carried out mass spectrum pre-treatment, obtains polypeptide filtrate to be measured:
(2) the polypeptide composition of sample to be tested is checked by mass spectroscopy, the Holothuria mexicana composition in analyzing samples.
3. method according to claim 2, it is characterised in that, described mass spectrum pre-treatment step is as follows:
(1) take the sea cucumber powdered state of sample homogeneous, add protein extract (8M urea, 50mMNH4HCO3) concussion extraction albumen, high-speed low temperature is centrifugal, gets supernatant liquor and transfers in EP pipe;
(2) getting DTT joins in above-mentioned protein solution, and 37 DEG C are reacted 1 hour;
(3) IAA that enchashment is joined joins in the above-mentioned reaction solution being cooled to room temperature, and room temperature lucifuge reacts 1 hour;
(4) 10K filter membrane ultrafiltration 30 minutes is adopted, it may also be useful to ammonium bicarbonate soln is transferred in new EP pipe after repeatedly rinsing filter membrane upper strata 3 times;
(5) add ammonium bicarbonate soln again and repeat this step, merge solution and complete protein extraction under film;
(6) get Trypsin enzyme solution and join above-mentioned protein solution, in 37 DEG C of enzymolysis 16-18 hour;
(7) adopt 10K filter membrane ultrafiltration 20 minutes, collect the peptide section filtrate of lower floor, treat machine testing.
4. according to the method in claim 2 or 3, it is characterised in that, described mass spectroscopy is detected as, and adopts ABSCIEX5600 detections,
Mobile phase A: 0.1% formic acid-acetonitrile, Mobile phase B: 0.1% formic acid-water,
Flow velocity: 0.25mL/min,
TOF sweep limit: 350-1500Da,
Positive ion reaction pattern, GS1:35, GS2:45, CurtainGas:35, ISVF:5500, TEM:500, DP:100, CE:10.
5. according to the method in claim 2 or 3, it is characterized in that, Holothuria mexicana composition in described analyzing samples is, by the mass spectrogram of each bar specific polypeptide of the mass spectral results of testing sample contrast SEQIDNO.1��6, when the mass spectrometric detection spectrogram of each bar specific polypeptide of SEQIDNO.1��6 occurs, can judge that this tissue samples is Holothuria mexicana sample.
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Cited By (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2021143157A1 (en) * 2020-01-14 2021-07-22 大连深蓝肽科技研发有限公司 Peptide fragments, monoclonal antibody, colloidal gold test strip and detection method for detecting apostichopus japonicas oligopeptides

Citations (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN105116044A (en) * 2015-08-14 2015-12-02 中国海洋大学 Method for identifying thelenota ananas by means of special peptide fragment group

Patent Citations (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN105116044A (en) * 2015-08-14 2015-12-02 中国海洋大学 Method for identifying thelenota ananas by means of special peptide fragment group

Cited By (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2021143157A1 (en) * 2020-01-14 2021-07-22 大连深蓝肽科技研发有限公司 Peptide fragments, monoclonal antibody, colloidal gold test strip and detection method for detecting apostichopus japonicas oligopeptides

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