CN105548407B - The detection method of modified nucleoside in urine - Google Patents

The detection method of modified nucleoside in urine Download PDF

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CN105548407B
CN105548407B CN201610038315.4A CN201610038315A CN105548407B CN 105548407 B CN105548407 B CN 105548407B CN 201610038315 A CN201610038315 A CN 201610038315A CN 105548407 B CN105548407 B CN 105548407B
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urine
modified nucleoside
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filter paper
methanol
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CN105548407A (en
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童鸿斌
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Hangzhou Health-Bank Medical Laboratory Co Ltd
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Hangzhou Health-Bank Medical Laboratory Co Ltd
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    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N30/00Investigating or analysing materials by separation into components using adsorption, absorption or similar phenomena or using ion-exchange, e.g. chromatography or field flow fractionation
    • G01N30/02Column chromatography
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N30/00Investigating or analysing materials by separation into components using adsorption, absorption or similar phenomena or using ion-exchange, e.g. chromatography or field flow fractionation
    • G01N30/02Column chromatography
    • G01N2030/022Column chromatography characterised by the kind of separation mechanism
    • G01N2030/027Liquid chromatography

Abstract

The invention provides a kind of detection method of modified nucleoside in urine, following steps are specifically included:Urine pretreatment after be stored on filter paper, after by the way that sample to be tested is obtained by extraction;The sample to be tested is detected by LC-MS, the species and content of modified nucleoside are obtained.In the detection method that the present invention is provided, by the way that urine is stored on filter paper again by extraction process, with LC-MS method, qualitative and quantitative detection quickly and efficiently can be carried out to the modified nucleoside in urine.Due to urine is stored on filter paper, urine sample is converted into solid form and preserved, stability is greatly improved, so as to avoid microorganism pollution from detecting sample.Moreover, the method that provides of the present invention is also more simpler than existing freezing, conveniently.

Description

The detection method of modified nucleoside in urine
Technical field
The present invention relates to liquid spectrum mass spectrometric hyphenated technique field, in particular to a kind of detection of modified nucleoside in urine Method.
Background technology
Modified nucleoside is primarily present in RNA, be acted on after transcription by specific transmethylase and ligase it is many Poly- nucleoside molecule and form.RNA metabolism is required for specific enzyme to be catalyzed, normal nucleotide enzymolysis after degradable or phosphatideization again Utilize, and to be the glycosidic bond of normal nucleotide, base, sugared hydroxyl be modified or combine two-by-two the unique knot of generation to modified nucleoside Structure, due to highly being modified, the enzymatic activity that degraded modified nucleoside needs is higher, high specificity, and therefore, modified nucleoside is from cell Discharge, discharged eventually through urine.Therefore, the content of modified nucleoside can be used to evaluate the nucleoside metabolism shape of human body in urine Condition.
At present, have been reported and modified nucleoside in urine is detected using capillary electrophoresis, but this method is detected Modified nucleoside classification it is few.It is additionally, since in urine and contains multiple-microorganism.If preserved in liquid form for a long time, micro- life Thing will pollute urine, and it is all that will be deposited after urine sampling to be detected to influence in the accuracy of testing result, existing detection method Freezen protective in refrigerator is stored in, is thawed again during detection, refrigerating plant is not only needed, defrosting step also make it that detection time is elongated.
In view of this, it is special to propose the present invention.
The content of the invention
It is an object of the invention to provide a kind of detection method of modified nucleoside in urine.For detection sample easily by micro- life Urine is stored on filter paper in the shortcoming of thing pollution, the detection method that the present invention is provided, not only stabilizing it property is carried significantly It is high, it is to avoid the pollution of microorganism, but also with simple, convenient advantage.
In order to realize the above-mentioned purpose of the present invention, spy uses following technical scheme:
The detection method of modified nucleoside, comprises the following steps in urine:
(1) urine pretreatment after be stored on filter paper, after by the way that sample to be tested is obtained by extraction;
(2) sample to be tested is detected by LC-MS, obtains the species and content of modified nucleoside.
In the detection method that the present invention is provided, by the way that urine is stored on filter paper again by extraction process, with liquid Matter method for combined use, quickly and efficiently can carry out qualitative and quantitative detection to the modified nucleoside in urine.
Due to urine is stored on filter paper, urine sample is converted into solid form and preserved, stability is significantly Improve, so as to avoid microorganism pollution from detecting sample.Moreover, the method that the present invention is provided is also more simpler than existing freezing Easily, conveniently.
Preferably, specifically included in step (1), the step of the extraction:Filter paper is put into methanol water mixed solution Supernatant is taken as sample to be tested after ultrasound, centrifugation.
In the detection method that the present invention is provided, in order to which the urine specimen being stored on filter paper is fully reduced, by filter paper Piece be put into methanol water mixed solution carry out ultrasound so that each component on filter paper is fully dissolved into solution, after pass through again Centrifugation obtains supernatant, regard this supernatant as sample to be tested.
During actually detected, the filter paper for preserving urine can be punched, aperture is 3mm, obtains a diameter of 3mm's Filter paper dick, takes appropriate filter paper dick to be placed in centrifuge tube, adds and ultrasound, centrifugally operated are carried out after methanol aqueous solution.
In order to which each component ensured in filter paper fully can be dissolved in solution, methanol in methanol aqueous solution used Volume content be 5%-50%, ultrasonic time is 20-90min.
After ultrasound, modified nucleoside is not only contained in solution, also containing other solid impurities, the accurate of testing result is influenceed Property, in order to which impurity is removed as much as possible, in the detection method that the present invention is provided, the rotating speed of centrifugation is controlled in 10000- 18000rpm, the time is 5-30min.
In order to ensure in the stability for detecting sample, step (1), the step on filter paper is stored in after the urine pretreatment Suddenly specifically include:Add and dripped after the mixing of 8- bromines guanosines on filter paper into urine, and air-dry more than 3 hours.
In the above-mentioned methods, the 8- bromines guanosine of addition is as internal standard compound, to carry out quantitative analysis to modified nucleoside.
Preferably, step (2) is specifically included:
(21) standard items are weighed, are dissolved with methanol, the titer of various concentrations is obtained;
(22) weigh internal standard compound, be separately added into after being dissolved with methanol aqueous solution in the titer, after ultra-pure water constant volume from The heart, takes supernatant as titer to be measured;
(23) sample to be tested and the titer to be measured are detected by LC-MS, obtains the species of modified nucleoside And content.
In the detection method that the present invention is provided, the content of the modified nucleoside in urine is detected using internal standard method. In detection process, weigh standard items is completely dissolved it with methanol, obtains the titer of various concentrations, into titer in addition Mark thing after through processing obtain titer to be measured, to carry out LC-MS detection, respectively with the peak area of each modified nucleoside with it is interior The concentration for marking each modified nucleoside in the comparison urine sample of thing peak area carries out linear regression, obtains the linear equation of each modified nucleoside, For carrying out quantitative analysis to each modified nucleoside in urine.
In order to ensure the accuracy of LC-MS testing result, the present invention uses specific liquid-phase condition and Mass Spectrometry Conditions, Specifically, in step (23), the liquid-phase condition of the LC-MS detection is:The flow velocity of mobile phase is 0.1-1.0mL/min;Enter Sample amount 1-20 μ L;Bonded-phase chromatography post;20-40 DEG C of column temperature;A and B is methanol aqueous solution as mobile phase, wherein A, and B is formic acid Methanol solution, gradient elution program is as shown in table 1.
The gradient elution program of table 1
Mass Spectrometry Conditions are:Using ESI ion guns, cation MRM scannings, atomization gas flow velocity 8-20L/min, gas curtain gas velocity 8-20L/min, collision gas flow velocity 5-15L/min, ion source voltage 2000-4000V, 200-400 DEG C of ion source temperature.
After above-mentioned liquid chromatogram and Mass Spectrometer Method, effectively the modified nucleoside in urine can be carried out qualitative and quantitative Analysis.Also, analyze speed is fast, completing once analysis only needs 13 minutes.
Because modified nucleoside species is more, in order to guarantee as much as possible to separate the modified nucleoside in urine, further Preferably, in the liquid-phase condition, mobile phase A is 0.1-10% methanol aqueous solutions, and B is 0.1-10% formic acid methanol solutions.
Based on same consideration, in the liquid-phase condition, the bonded-phase chromatography post is C18/C8 chromatographic columns, and specification is (50-100) mm × (1.8-3) mm, (1.8-3) μm.
Preferably, in step (21), the standard items include pseudouridine, cytidine, M1A, urine Pyrimidine nucleoside, adenosine, inosine, guanosine, 1-methyl hypoxanthine nucleosides, 5-methyl-uridin, Huang Purine nucleosides, 3- methyluridines, M1G, 6- methyladenosines, M2G, N4- acetyl group cytidine and N2, N2- bis- Methylguanosine.
In the detection method that provides of the present invention, standard items used include 16 kinds, and determining for 16 kinds of modified nucleosides can be achieved Property and quantitative analysis so that detection range improve.
Preferably, in step (22), the internal standard compound is 8- bromine guanosines.
In the detection method that the present invention is provided, from 8- bromines guanosine as internal standard compound, good stability can be used in urine Modified nucleoside in liquid carries out quantitative analysis.
Compared with prior art, beneficial effects of the present invention are:
(1) urine is stored on filter paper by the present invention, and stabilizing it property is greatly improved, it is to avoid microorganism is to detection sample The pollution of product, solves the problem of urine can not for a long time be preserved, transported.
(2) present invention may be such that each component on filter paper is fully dissolved out by the optimization to extraction process, can be also The authenticity of original detection sample so that the accuracy of testing result is greatly improved.
(3) present invention is realized to urine by the optimization to liquid-phase condition and Mass Spectrometry Conditions in LC-MS detection process The qualitative and quantitative analysis of modified nucleoside in liquid, sensitivity is high, and accuracy is high, and analyze speed is fast.
(4) in the detection method that the present invention is provided, using 8- bromines guanosine as internal standard compound, using pseudouridine, born of the same parents Pyrimidine nucleoside, M1A, uridine (U), adenosine, inosine, guanosine, 1- methyl Xanthosine, 5-methyl-uridin, xanthosine, 3- methyluridines, M1G, 6- methyladenosines, M2G, N4- acetyl group cytidine and N2, N2- dimethylguanosine this modified nucleoside, can be to 16 kinds of modifications in urine as standard items in 16 Nucleosides carries out qualitative and quantitative analysis simultaneously, meet it is actually detected the need for.
Brief description of the drawings
In order to illustrate more clearly about the embodiment of the present invention or technical scheme of the prior art, below will be to embodiment or existing The accompanying drawing to be used needed for having technology description is briefly described.
Fig. 1 is the detection spectrogram of the embodiment of the present invention.
Embodiment
Embodiment of the present invention is described in detail below in conjunction with embodiment, but those skilled in the art will Understand, the following example is merely to illustrate the present invention, and is not construed as limiting the scope of the present invention.It is unreceipted specific in embodiment Condition person, the condition advised according to normal condition or manufacturer is carried out.Agents useful for same or the unreceipted production firm person of instrument, are The conventional products that can be obtained by commercially available purchase.
Embodiment
Instrument and material:
The tandem mass spectrometer of Agilent companies of the U.S. 6495, the liquid chromatographs of Angilent 1290, chromatographic column is Agilent C18 posts, specification is 50mm × 3.0mm, 2.7 μm.
Medicine and reagent:
Standard items:Pseudouridine, cytidine, M1A, uridine, adenosine, secondary Huang Purine nucleosides, guanosine, 1-methyl hypoxanthine nucleosides, 5-methyl-uridin, xanthosine, 3- methyluridines, 1- first Base guanosine, 6- methyladenosines, M2G, N4- acetyl group cytidine, N2, N2- dimethylguanosines are bought from Sigma- Aldrich.
Internal standard compound:8- bromines guanosine (8-Br-G), buys from Sigma-Aldrich companies.
Methanol:Chromatographically pure, Merck companies.
Formic acid:Chromatographically pure, Merck companies.
Ultra-pure water:Thermo companies.
Urine sample:Volunteer's urine sample.
Above-mentioned 16 kinds of standard items are accurately weighed, is dissolved respectively with methanol, 10mg/mL solution is configured to respectively, is remixed 10 μ g/mL hybrid standard product storing solution is into each standard concentration.
A certain amount of internal standard compound 8- bromine guanosines are accurately weighed, with 50% methanol water mixed solution (the i.e. volume of first alcohol and water Than for 1:1) dissolve and the storing solution for 0.3mg/mL is diluted with water, add water the internal standard solution for being diluted to that content is 0.15mg/mL.
Take respectively the μ L of hybrid standard product storing solution 5,10 μ L, 20 μ L, 50 μ L, 100 μ L, 200 μ L, 400 μ L, 800 μ L in In 1.5mL centrifuge tubes, and 20 μ L internal standard solutions are separately added into, 1mL is settled to respectively with ultra-pure water, be put into supercentrifuge and carry out Centrifugally operated, rotating speed is set to 12000rpm, and set of time is 5min.Centrifugation takes supernatant as titer to be measured after terminating.
Take urine 100ul, and add 20ul internal standard solution, fully mix, after mixed liquor is dropped on filter paper, room temperature wind It is dry more than 3 hours.
Punched on air-dried filter paper, aperture is 3mm, obtains a diameter of 3mm filter paper dick.Take 2 filter paper dicks It is placed in 1.5mL centrifuge tubes, with 5% methanol water dissolves, (i.e. the volume ratio of first alcohol and water is 5:95), and ultrasound 20-30 minutes, Place into afterwards and centrifugally operated is carried out in centrifuge, the rotating speed of centrifugation is controlled in 12000rpm, and the time is 20min.
Centrifugation takes supernatant as sample to be tested after terminating.
Obtained sample to be tested and titer sample introduction to be measured are detected into LC-MS instrument.
The liquid-phase condition of LC-MS detection is:Flow velocity is 0.1-1.0mL/min;Sample size 1-20 μ L;Column temperature 20- 40℃;A and B is as mobile phase, and wherein A is that (i.e. the volume ratio of first alcohol and water is 0.1 to 0.1% methanol aqueous solution:99.9), B is (i.e. the volume ratio of formic acid and methanol is 0.1 to 0.1% formic acid methanol solution:99.9), gradient elution program is as shown in table 1.
Mass Spectrometry Conditions are:Using ESI ion guns, cation MRM scannings, atomization gas flow velocity 10L/min, gas curtain gas velocity 10L/min, collision gas flow velocity 8L/min, ion source voltage 2500V, 400 DEG C of ion source temperature.
Its testing result is as shown in Figure 1.In Fig. 1 each numeral represent the component that represents as:
1:Pseudouridine;2:Cytidine;3:M1A;4:Uridine;5:Adenosine;6: Inosine;7:Guanosine;8:1-methyl hypoxanthine nucleosides;9:5-methyl-uridin;10:Xanthosine;11: 3- methyluridines;12:M1G;13:6- methyladenosines;14:M2G;15:N4- acetyl group cytidines;16:N2, N2- dimethylguanosines;17:The bromo- guanosines of 8-.
From figure 1 it appears that each component peak sequence is:Pseudouridine, cytidine, M1A, Uridine, adenosine, inosine, guanosine, 1-methyl hypoxanthine nucleosides, 5-methyl-uridin, Xanthosine, 3- methyluridines, M1G, 6- methyladenosines, M2G, N4- acetyl group cytidine, N2, N2- bis- Methylguanosine, 8- bromine guanosines.
By the peak area of each modified nucleoside detected in titer to be measured and the comparison work mark of the peak area of internal standard compound The concentration of each modified nucleoside carries out linear regression in quasi- liquid, obtains the standard curve of each modified nucleoside.Its result is as shown in table 2.
The standard curve and the content in urine sample of 2 16 kinds of modified nucleosides of table
According to the ratio between the peak area of each modified nucleoside of urine to be measured and internal standard compound peak area, the standard substituted into respectively in table 1 Curve, obtains the content of each modified nucleoside in urine.
Detection method reappearance analyzes (rate of recovery test)
Take 200 μ L samples to be tested, be separately added into the blank water of 100 μ L hybrid standard product storing solutions and same volume in In 1.5mL centrifuge tubes, then 20 μ L internal standard solutions are separately added into, are settled to 1mL respectively with ultra-pure water, are put into supercentrifuge 5min is centrifuged under 12000rpm rotating speed, it is sufficiently mixed.Centrifugation takes supernatant to carry out LC-MS detection after terminating.Liquid matter It is combined the liquid-phase condition and Mass Spectrometry Conditions be the same as Example 1 of detection.
By the working curve in the ratio between the peak area of each modified nucleoside detected and internal standard compound peak area substitution table 2, obtain To the content of each modified nucleoside.
Operation is repeated 3 times, as a result relative standard deviation 1.98%-3.67%, sample recovery rate is in 81%-98.7%, table The favorable reproducibility of bright detection method.
Detection method precision accuracy analysis (day internal difference difference analysis in the daytime)
Under the conditions of the identical liquid chromatography mass of be the same as Example 1, the hybrid standard product storing solution of different volumes is taken to carry out Detection, in 1 day in continuous sample introduction 3 times, 3 days daily sample introduction once, as a result in a few days CV is fluctuated in 1.98%-3.67%, in the daytime CV In 3.51%-11.24% fluctuations, meet the requirements.
The detection method analyze speed that the present invention is provided it can be seen from the above is fast, and completing once analysis only needs 13 Minute.16 kinds of modified nucleosides in urine can be carried out qualitative and fixed by the detection method provided using the present invention faster and betterly Amount analysis.
Although illustrate and describing the present invention with specific embodiment, but it will be appreciated that without departing substantially from the present invention's Many other changes and modification can be made in the case of spirit and scope.It is, therefore, intended that in the following claims Including belonging to all such changes and modifications in the scope of the invention.

Claims (1)

1. the detection method of modified nucleoside in urine, it is characterised in that comprise the following steps:
(1) urine pretreatment after be stored on filter paper, after by the way that sample to be tested is obtained by extraction;
(2) sample to be tested is detected by LC-MS, obtains the species and content of modified nucleoside;
Specifically included in step (1), the step of the extraction:Filter paper is put into methanol water mixed solution through ultrasound, centrifugation After take supernatant as sample to be tested;
Step (2) is specifically included:
(21) standard items are weighed, are dissolved with methanol, the titer of various concentrations is obtained;
(22) internal standard compound is weighed, is separately added into after being dissolved with methanol aqueous solution in the titer, centrifuges, takes after ultra-pure water constant volume Supernatant is used as titer to be measured;
(23) sample to be tested and the titer to be measured are detected by LC-MS, obtains the species of modified nucleoside and contain Amount;
In step (23), the liquid-phase condition of the LC-MS detection is:Flow velocity is 0.1-1.0mL/min;Sample size 1-20 μ L; Bonded-phase chromatography post;20-40 DEG C of column temperature;A and B is as mobile phase, and wherein A is methanol aqueous solution, and B is formic acid methanol solution, ladder Degree elution program is 0-0.5min, A:97%th, B:3%;0.5-3min, A:97~5%, B:3~95%;3-3.01min, A:5- 97%th, B:95-3%;3.01-11min, A:97%th, B:3%;11.01min, A:97%th, B:3%;13min, A:97%th, B: 3%;
Mass Spectrometry Conditions are:Using ESI ion guns, cation MRM scannings, atomization gas flow velocity 8-20L/min, gas curtain gas velocity 8- 20L/min, collision gas flow velocity 5-15L/min, ion source voltage 2000-4000V, 200-400 DEG C of ion source temperature;
In step (21), the standard items include pseudouridine, cytidine, M1A, uridine, gland Purine nucleosides, inosine, guanosine, 1-methyl hypoxanthine nucleosides, 5-methyl-uridin, xanthosine, 3- Methyluridine, M1G, 6- methyladenosines, M2G, N4- acetyl group cytidine and N2, N2- dimethylguanosine;
In step (22), the internal standard compound is 8- bromine guanosines;
In the liquid-phase condition, mobile phase A is 0.1-10% methanol aqueous solutions, and B is 0.1-10% formic acid methanol solutions;
In the liquid-phase condition, the bonded-phase chromatography post is C18 or C8 chromatographic columns, and specification is (50-100) mm × (1.8-3) Mm, (1.8-3) μm;
In step (1), the rotating speed of the centrifugation is 10000-18000rpm, and the time is 5-20min;
In step (1), the step being stored in after the urine pretreatment on filter paper is specifically included:8- bromine birds are added into urine Drip on filter paper, and air-dry more than 3 hours after glycosides mixing;
The modified nucleoside include pseudouridine, cytidine, M1A, uridine, adenosine, Inosine, guanosine, 1-methyl hypoxanthine nucleosides, 5-methyl-uridin, xanthosine, 3- methyluridines, M1G, 6- methyladenosines, M2G, N4- acetyl group cytidine and N2, N2- dimethylguanosine.
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