CN104762301B - A kind of kit and method for detecting liver cancer risk genes TSPYL5 methylation levels - Google Patents

A kind of kit and method for detecting liver cancer risk genes TSPYL5 methylation levels Download PDF

Info

Publication number
CN104762301B
CN104762301B CN201510200380.8A CN201510200380A CN104762301B CN 104762301 B CN104762301 B CN 104762301B CN 201510200380 A CN201510200380 A CN 201510200380A CN 104762301 B CN104762301 B CN 104762301B
Authority
CN
China
Prior art keywords
methylation
tspyl5
dna
kit
primer
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Active
Application number
CN201510200380.8A
Other languages
Chinese (zh)
Other versions
CN104762301A (en
Inventor
郑芳
杨国华
邱雪平
黄芳
黄一芳
邓冠华
高嘉嘉
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Wuhan University WHU
Original Assignee
Wuhan University WHU
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Wuhan University WHU filed Critical Wuhan University WHU
Priority to CN201510200380.8A priority Critical patent/CN104762301B/en
Publication of CN104762301A publication Critical patent/CN104762301A/en
Application granted granted Critical
Publication of CN104762301B publication Critical patent/CN104762301B/en
Active legal-status Critical Current
Anticipated expiration legal-status Critical

Links

Abstract

The invention discloses one kind to detect liver cancer risk genesTSPYL5The kit and method of methylation level, belong to biological technical field.DetectionTSPYL5The horizontal kit of gene methylation includes the primer pair B for the primer pair A of MSRE qPCR methods or for BSP methods, and these primer sequences are as shown in SEQ ID NO.1 22.Present invention findsTSPYL5The relevance that gene methylation occurs with liver cancer, and identifyTSPYL5Methylation sites.The present invention combines specific primer using specific methylation sensitive restriction enzyme, establishes the detection of quantitative fluorescent PCRTSPYL5Methylation method.Detected by kit of the present invention based on MSRE qPCR and methodTSPYL5Methylation level, for its high sensitivity up to 83.9%, specificity is up to 93.25%.

Description

A kind of kit and method for detecting liver cancer risk genes TSPYL5 methylation levels
Technical field
The present invention relates to biological technical field, and liver cancer risk genes are detected more particularly to one kindTSPYL5Methylation level Kit and method.
Background technology
DNA methylation is one of main contents of epigenetics research, and research is that gene base sequence does not change The reversible hereditary change occurred in the case of change, it is covalent modification mode after a kind of DNA molecular replicates.In eucaryote In, DNA methylation refers in dnmt rna(DNMTs)In the presence of, it is methyl donor by methyl using S-adenosylmethionine The process being transferred in the particular bases in DNA molecular, it is occurred mainly on cytimidine in CpG dinucleotides.In gene In group, the region of CpG dinucleotides distribution Relatively centralized is referred to as CpG islands(CpG islands, CGIs), size 100~ 1000bp, it is predominantly located at promoter region and the First Exon area of gene;The abnormal methylation on CpG islands can directly result in correlation The expression silencing of gene.The specific methylation patterns of DNA are for maintaining Genome stability and the correct spatial and temporal expression of gene to have Significant, the abnormal change of methylation patterns will directly participate in the human diseases even generation of cancer.
Methylation sensitive restriction enzyme combination PCR method(Methylation-sensitive Restriction enzyme digestion and PCR, MSRE-PCR)It is to be based on methylation sensitive restriction enzyme The characteristic that methylation sites are not cut, by DNA digestion to enter performing PCR amplification after different size of fragment again, produced according to electrophoresis Thing variance analysis methylation state.Concrete principle is referring to Fig. 1, to the restricted of specific DNA fragment methylated DNA fragments sensitivity After restriction endonuclease carries out digestion, enter performing PCR by amplification starting point of sequence on the outside of methylation sites to be measured.If the DNA fragmentation in the presence of Methylate, it will have amplified production appearance;If without methylating, any fragment amplification is not had and is occurred.When unwise with methylating When the endonuclease digestion product of sense is as pcr template, there should not be fragment to expand no matter whether the position methylates all.
Bisulfite cloning and sequencing(Bisulfite sequencing PCR, BSP)Method, the DNA of extraction is through Asia After disulfate modification, the cytosine deamination not methylated is transformed into urea pyrimidine, and the cytimidine to methylate is kept not Become.Thymidine is completely converted into by PCR urea pyrimidines.Glue purification is cut after PCR primer agarose electrophoresis, is subsequently attached to PMD18-T carriers, Escherichia coli are converted, single positive colony extraction plasmid is chosen after being incubated overnight and is sequenced, obtains each DNA The distribution map of molecule specific region methylation sites, so as to obtain the methylation state in each CpG sites in the region.This method is The method of the very high detection methylation state of a kind of reliability and accuracy, each CpG site in the fragment that can have a definite purpose Methylation state.On significant key CpG sites are found, there is the advantages of other method is incomparable.But the party Method expends time, fund and energy, and the clone of more than 10, which is at least sequenced, could obtain authentic data, it is necessary to substantial amounts of gram The sequencing of grand and plasmid extraction, process are relatively complicated, expensive.So it is difficult to realize high-throughout automatic detection in clinic, but Can be as the control methods of DNA methylation assay new method.
The proposed methylation sensitive restriction enzyme combination quantitative fluorescent PCR that is based on of this kit(MSRE-qPCR) Method, the subsequent detection of MSRE-PCR methods is changed to quantitative fluorescent PCR, can quantify detection the specific base of minim DNA sample Because of the methylation level in site.This method is easy to use, has well without carrying out bisulf iotate-treated, and to paraffin section Compatibility.
The content of the invention
Based on this, it is an object of the invention to provide the good detection liver cancer risk genes of a kind of high sensitivity, specificityTSPYL5The kit of methylation level.
The purpose of the present invention is achieved through the following technical solutions:
One kind is used to detectTSPYL5The method of the quantitative fluorescent PCR of gene methylation, comprises the following steps:1. extraction is treated Survey sample genomic dna;2. digestion is carried out to genomic DNA using methylation sensitive restriction enzyme;3. use primer Fluorescent quantitative PCR is carried out to digestion products to A;4. the Ct values of PCR primer are analyzed;5. judged according to analysis result In sampleTSPYL5The methylation level of gene.
Wherein, step 3. in primer pair A be preferably a pair in following four pairs of primers(Primer pair amplifies are represented in bracket The length of fragment):
AF1:5’-CCCCGCGAGCGCATATCAGAG -3’(176bp),
AR1:5’-GCAACCGCCGACGTCACGAAC-3’;
AF2:5’-ATATCAGAGAAACTCGCCGAG-3’(150bp),
AR2:5’-CACGAACGTACAACTGTACCG-3’;
AF3:5’-CAGAGAAACTCGCCGAGACCTA-3’(231bp),
AR3:5’-TTCAAAGACACGCTGTGACCCT-3’;
AF4:5’-AGCGCATATCAGAGAAACT-3’(140bp),
AR4:5’-GTACCGTCGCGAGAGGACGTGA-3’.
Above-mentioned primer designs to obtain by the following method:Obtained from UCSC databasesTSPYL5CpG island sequence, passes through The restriction enzyme site in the sequence is analyzed, using online primer-design software(http://simgene.com/Primer3)primer The designs of premier 3.0 include the PCR primer of 2-6 restriction enzyme site.Screen and verify by repetition test, obtained amplification effect Rate is high, specificity is good, can detect sampleTSPYL5The horizontal primer of gene methylation.
One kind is based on methylation sensitive restriction enzyme combination fluorescence quantitative PCR detectionTSPYL5Gene methylation water Flat kit A, include above-mentioned primer pair A.
Described kit A also includes methylation sensitive restriction enzyme.
Described kit A is also comprising methylate negative control and positive control.Preferably, negative control includes normal person Peripheral blood DNA, the unmethylated human genome DNA's control of commercialization;Positive control includes commercialized exhaustive methylation Human genome DNA, the liver cancer cell lines DNA of certified target fragment exhaustive methylation.
Described kit A also SYBR Green fluorescent dyes comprising quantitative fluorescent PCR etc..
Mentioned reagent box A application method, comprises the following steps:1. extract sample to be tested genomic DNA;2. use methyl Change sensitive restriction restriction endonuclease and digestion is carried out to genomic DNA;3. fluorescent quantitation is carried out to digestion products using primer pair A PCR is expanded;4. the analysis of Ct values is carried out to PCR primer.
The system of described digestion is preferably:DNA 300ng, Buffer(10×)5 μ L, methylation sensitive are restricted interior Enzyme cutting 30U, ddH2O complements to 50 μ L.
The reaction system of described PCR amplifications is preferably:SYBR Mix(2×)10 μ L, sense primer(F)0.5 μ L, downstream Primer(R)0.5 μ L, ddH2The μ L of O 7, the μ L of digestion products 2.
The reaction condition of described PCR amplifications is preferably:95℃ 5min;95 DEG C of 30s, 61 DEG C of 30s, 72 DEG C of 30s, 35-40 cycles。
Kit A of the present invention based on methylation sensitive restriction enzyme combination quantitative fluorescent PCR can be divided into inspection Two parts of examining system and monitoring system.Detecting system includes above-mentioned primer pair A, can by it is therein any one combine. Monitoring system then includes:1. negative control includes 2 kinds, the 1st kind be the region to be measured that has confirmed for it is non-methylate it is normal Human gene group DNA's template;2nd kind is the commercialized non-human genome DNA's control that methylates.All feminine genders are right under normal circumstances According to methylation level answer convergence 0, otherwise show sample-adding process have pollution or digestion it is incomplete.2. positive control is commercialization Exhaustive methylation human genome DNA, the liver cancer cell lines DNA of certified target fragment exhaustive methylation;Normally The methylation level of the lower positive control of reaction answers convergence 1, otherwise illustrates the failure of an experiment.
Another kind is used to detectTSPYL5The BSP of gene methylation method, comprises the following steps:1. extract sample to be tested Genomic DNA;2. genomic DNA is modified using sodium hydrogensulfite;3. the DNA after modification is carried out using primer pair B PCR is expanded;4. PCR primer cloning and sequencing analyzes the methylation status in each CG sites.
Wherein, step 3. in primer pair B include Outside primer(W)And inner primer(N), wherein Outside primer is following A pair of 3 centerings:
BWF1:5’-TAAGAGATAATTGGAGGA-3’(465bp),
BWR1:5’-ACCTTTACCCCGATTTTTA-3’;
BWF2:5’-ACGTTCGAGTATTTTTTTTA-3’(498bp),
BWR2:5’-GACCTTTACCCCAATTTTTA-3’;
BWF3:5’-AGATAATTGGAGGAGTTGAAGA-3’(526bp),
BWR3:5’-TACTATAAAAAATCCGAATCGC-3’;
Inner primer is a pair in following 4 pairs of primers:
BNF1:5’-AATAGGTGATGGGGGATAGGT-3’(376bp),
BNR1:5’-CCGCTCATAATAACGACGAAA-3’;
BNF2:5’-AGAAAATAGGTGATGGGGGA-3’(383bp),
BNR2:5’-CGACCGCTCATAATAACGAC-3’;
BNF3:5’-TTAGAAAATAGGTGATGGGGGATAG-3’(373bp),
BNR3:5’-ATAACGACGAAAACAACTTCAAAAA-3’;
BNF4:5’-AATAGGTGATGGGGGATAG-3’(378bp),
BNR4:5’-GACCGCTCATAATAACGAC-3’.
Above-mentioned primer designs to obtain by the following method:Obtained from UCSC databasesTSPYL5CpG island sequence, is used for The primer of BSP methods uses online methylated primers design software(http://www.urogene.org/methprimer/) MethPrimer is designed.Screen and verify by repetition test, obtained that amplification efficiency is high, specificity is good, sample can be detectedTSPYL5The horizontal BSP primers of gene methylation.
A kind of PCR detections based on sodium hydrogensulfite modificationTSPYL5The horizontal kit B of gene methylation, comprising above-mentioned Primer pair B.
Described kit B is also comprising methylate negative control and positive control.Preferably, negative control includes normal person Peripheral blood DNA, the non-human genome DNA's control to methylate of commercialization;Positive control includes the commercialized mankind's base that methylates Because of a group DNA, the liver cancer cell lines DNA of certified target fragment exhaustive methylation.
Described kit B also includes PCR reagent(DNTPs, archaeal dna polymerase, archaeal dna polymerase buffer etc.)And sulfurous Reagent needed for sour hydrogen sodium modification(Sodium hydrogensulfite, quinhydrones, sodium hydroxide, ammonium acetate, glycogen etc.).
Mentioned reagent box B application method, comprises the following steps:1. extract sample to be tested genomic DNA;2. use sulfurous Sour hydrogen sodium is modified genomic DNA;3. enter performing PCR amplification to the DNA after modification using primer pair B(Successively on the outside of use Primer and inner primer carry out Chao Shi PCR amplifications);4. PCR primer cloning and sequencing analyzes the methylation status in each CG sites.
The reaction system of described PCR amplifications is preferably:Buffer(10×)5 μ L, dNTPs(10mM)1 μ L, MgCl2 (25mM)4 μ L, Taq(1U/μL)2 μ L, sense primer(F)1 μ L, anti-sense primer(R)1 μ L, ddH2The μ L of O 32, the μ L of DNA profiling 4.
Described Chao Shi PCR expand outside, the reaction condition of inner side is both preferably:95 DEG C, 5min;95 DEG C, 30s, 68 DEG C- 56 DEG C, 2cycles/2 DEG C, 45s, 72 DEG C, 45s, annealing temperature carries out 25cycles when being down to 56 DEG C;72 DEG C, 10min.
Present invention findsTSPYL5The relevance that gene methylation occurs with liver cancer, and identifyTSPYL5Methylate Site, with reference to methylation sensitive restriction enzyme and specific primer, establish the detection method of quantitative fluorescent PCR.And And then this conclusion is verified using BSP method.
It is of the present inventionTSPYL5Up to 80.37%, specificity is up to the high sensitivity of gene methylation detection kit 93.25%。
This method is substantially increased detection efficiency, is reduced detection using fluorescence quantifying PCR method detection DNA methylation Cost.Testing result is simple, intuitively, and high flux, it once can detect many samples.
Brief description of the drawings
Fig. 1 is MSRE-PCR schematic diagrams;In figure, CH3 represents to methylate, and enz represents methylation sensitive restriction enzyme Enzyme;Without methylating, DNA is cut off left figure DNA, can not obtain PCR primer;Right figure DNA methylates, and DNA keeps complete, can be with Obtain PCR primer.
Fig. 2 is the amplification curve (a) of negative control and melting curve (b) figure in embodiment 1, wherein grey and black line point Do not represent enzyme-added with being not added with enzyme system, each two multiple holes of sample;RFU represents the fluorescent value of amplified reaction;- d (RFU)/dt is represented The negative one subderivative that fluorescence signal changes.
Fig. 3 is the positives control amplification curve (a) of embodiment 1 and melting curve (b) figure, wherein grey and black line point Do not represent enzyme-added with being not added with enzyme system, each two multiple holes of sample;RFU represents the fluorescent value of amplified reaction;- d (RFU)/dt is represented The negative one subderivative that fluorescence signal changes.
Fig. 4 is embodiment 1 using in MSRE-qPCR detection liver cancer and cancer beside organismTSPYL5The horizontal scatterplot of gene methylation Figure.
Fig. 5 is in embodiment 1TSPYL5Gene methylation is horizontal to distinguish liver cancer and cancer beside organism's ROC curve figure.
Fig. 6 is embodiment 2 using in BSP clone sequencings detection liver cancer and cancer beside organismTSPYL5Gene methylation is horizontal Case figure.
Fig. 7 is liver cancer and cancer beside organism in embodiment 2TSPYL5Each CpG sites of gene methylate bar chart.
Embodiment
In order to be more clearly understood that the technology contents of the present invention, described in detail especially exemplified by following examples.It should be understood that this A little embodiments are only illustrative of the invention and is not intended to limit the scope of the invention.
The experimental method of unreceipted actual conditions in the following example, generally according to normal condition, such as Sambrook etc. People, molecular cloning:Laboratory manual(New York: Cold Spring Harbor Laboratory Press, 1989)In Described condition, or according to the condition proposed by manufacturer.Used various conventional chemical reagent, are city in embodiment Sell product.Unless otherwise defined, the technical field of all technologies used in the present invention and scientific terminology with belonging to the present invention The implication that is generally understood that of technical staff it is identical.The term used in the description of the present invention is intended merely to describe specific reality The purpose of example is applied, is not used in the limitation present invention.
Embodiment 1TSPYL5Gene methylation fluorescent PCR detects 163 pairs of liver cancer and cancer beside organism's sample
Paraffin sample and frozen tissue sample genomic dna use the kit of Qiagen companies(QIAamp DNA FFPE Tissue kit;QIAamp DNA Mini Kit)Extraction.The concentration and purity of DNA sample use NanoDrop- 2000c is detected.
300ng DNA samples carry out digestion using methylation sensitive restriction enzyme(HinP1I), digestion system is: DNA 300ng, Buffer(10×)5 μ L, methylation sensitive restriction enzyme 30U, ddH2O complements to 50 μ L, and this is Enzyme-added group.Not enzyme-added group of processing removes and uses ddH2O is substituted outside restriction enzyme, and remaining is all identical with enzyme-added group.It is negative Control(It is commercialized the non-human genome DNA's control to methylate), positive control(The human gene of commercialized exhaustive methylation Group DNA)Also same processing is done.
PCR primer is designed for restriction enzyme site, using quantitative fluorescent PCR to being handled by digestion(Enzyme-added group)And non-digestion (Not enzyme-added group)DNA sample, negative control and positive control expanded(Two multiple holes of each sample).Amplification system is: SYBR Mix(2×)10 μ L, sense primer(F)0.5 μ L, anti-sense primer(R)0.5 μ L, ddH2The 2 μ L of μ L, DNA of O 7;On wherein Anti-sense primer is as follows:
Sense primer AF2:5 '-ATATCAGAGAAACTCGCCGAG-3 ',
Anti-sense primer AR2:5’-CACGAACGTACAACTGTACCG-3’;
Amplification condition is:95℃ 5min;95 DEG C of 30s, 61 DEG C of 30s, 72 DEG C of 30s, 35 cycles.
Using 100% × 2△ Cq (not enzyme-added group-enzyme-added group)Formula calculates the level to methylate, wherein △ Cq (not enzyme-added group-enzyme-added group) It is expressed as the average value of two multiple holes Cq values of average value-not enzyme-added group of enzyme-added group of two multiple holes Cq values.
As a result the methylation level for finding negative control is 0.00%(Fig. 2), the methylation level of positive control is 100.00%(Fig. 3).In cancerous tissueTSPYL5Gene methylation level is significantly higher than cancer beside organism(P<0.0001, Fig. 4), and ROC curve, which analyzes it and can be very good to distinguish cancer and cancer beside organism, its TG-AUC, can reach 91.4%(88.0%- 94.8%)(Fig. 5), when methylation level is cut off values with 7.015%, its sensitivity and specificity are respectively 80.37% He 93.25%。
The BSP clone sequencings of embodiment 2 are detected in liver cancer and cancer beside organismTSPYL5Gene methylation is horizontal
Paraffin sample and frozen tissue sample genomic dna use the kit of Qiagen companies(QIAamp DNA FFPE Tissue kit;QIAamp DNA Mini Kit)Extraction.The concentration and purity of DNA sample use NanoDrop- 2000c is detected.
2 μ g DNA samples are modified using sodium hydrogensulfite, negative control(It is commercialized the non-human genome to methylate DNA is compareed), positive control(The human genome DNA of commercialized exhaustive methylation)Also same processing is done, detailed process is such as Under:
(1)Take 2 μ g DNA to be placed in 2mL EP pipes, add appropriate autoclaving water and supply volume to 50 μ L;
(2)Add 5.5 μ L Fresh 3mol/L NaOH, 55 DEG C of water-bath 20min;
(3)Add the hydroquinone solution of Fresh(0.04mol/L)30 μ L and solution of sodium bisulfite(3.6 mol/L) 520 μ L, add 200 μ L paraffin oils, 55 DEG C of lucifuge water-baths 16 hours;
(4)Wizard DNA Clean-up System are purified(Carried out by operational manual);
(5)3mol/L NaOH 4 μ L, 37 DEG C of water-bath 15min are added into above-mentioned DNA after purification;
(6)22 μ L 10M ammonium acetates are added, 4 μ L 20g/L glycogens, 250 μ L ice absolute ethyl alcohols, -20 DEG C is placed in and precipitated Night;
(7)The DNA of precipitation is reclaimed, 70% ethanol is washed twice, is dissolved in after drying at room temperature in 50 μ L TE, is placed in -20 DEG C of guarantors Deposit.
For the sequences Design PCR primer after conversion, using Chao Shi PCR(Outside primer, inner primer, sequence are used successively Row are as follows)DNA after modification is expanded, primer sequence is specific as follows:
Outside primer:
Upstream BWF2:5 '-ACGTTCGAGTATTTTTTTTA-3 ',
Downstream BWR2:5’-GACCTTTACCCCAATTTTTA-3’;
Inner primer:
Upstream BNF2:5 '-AGAAAATAGGTGATGGGGGA-3 ',
Downstream BNR2:5’-CGACCGCTCATAATAACGAC-3’.
Interior outside PCR amplification conditions are:95 DEG C, 5min;95 DEG C, 30s, 68 DEG C -56 DEG C, 2cycles/2 DEG C, 45s, 72 DEG C, 45s, annealing temperature carries out 25cycles when being down to 56 DEG C;72 DEG C, 10min.
PCR primer is connected after cutting glue purification with pMD18-T carriers, then continues in DH5 α competence, in Amp (+) flat board It is incubated overnight rear 10 positive colony extraction plasmid order-checkings of picking.Sequencing result is analyzed, using 100 ×(Methylate The quantity of cytimidine quantity/all cytimidines)Calculate the methylation level of each site and each sample.
The present embodiment is by using BSP clone sequencings in the part liver cancer in embodiment 1 and cancer beside organismTSPYL5 Gene methylation level is detected.As a result cancerous tissue is foundTSPYL5The methylation level on gene promoter area CpG islands is high In cancer beside organism(P<0.0001, Fig. 6), and in cancerous tissueTSPYL5Each CpG sites methylates in gene amplification fragment Level is above cancer beside organism(Fig. 7).
Each technical characteristic of embodiment described above can be combined arbitrarily, to make description succinct, not to above-mentioned reality Apply all possible combination of each technical characteristic in example to be all described, as long as however, the combination of these technical characteristics is not deposited In contradiction, the scope that this specification is recorded all is considered to be.
Embodiment described above only expresses the several embodiments of the present invention, and its description is more specific and detailed, but simultaneously Can not therefore it be construed as limiting the scope of the patent.It should be pointed out that come for one of ordinary skill in the art Say, without departing from the inventive concept of the premise, various modifications and improvements can be made, these belong to the protection of the present invention Scope.

Claims (6)

1. one kind is horizontal based on methylation sensitive restriction enzyme combination fluorescence quantitative PCR detection TSPYL5 gene methylations Kit, it is characterised in that:Include following primer pair:
AF2:5 '-ATATCAGAGAAACTCGCCGAG-3 ',
AR2:5’-CACGAACGTACAACTGTACCG-3’;
Described methylation sensitive restriction enzyme is HinP1I.
2. kit according to claim 1, it is characterised in that:Also include methylation sensitive restriction enzyme.
3. kit according to claim 1, it is characterised in that:Also include quantitative fluorescent PCR reagent.
4. according to the kit described in claim any one of 1-3, it is characterised in that:Also comprising methylate negative control and methyl Change positive control.
5. kit according to claim 4, it is characterised in that:The described negative control that methylates includes Normal human peripheral Blood DNA, the non-human genome DNA to methylate.
6. kit according to claim 4, it is characterised in that:Described methylation positive control includes the people to methylate The liver cancer cell lines DNA that type genomic dna, target fragment methylate.
CN201510200380.8A 2015-04-24 2015-04-24 A kind of kit and method for detecting liver cancer risk genes TSPYL5 methylation levels Active CN104762301B (en)

Priority Applications (1)

Application Number Priority Date Filing Date Title
CN201510200380.8A CN104762301B (en) 2015-04-24 2015-04-24 A kind of kit and method for detecting liver cancer risk genes TSPYL5 methylation levels

Applications Claiming Priority (1)

Application Number Priority Date Filing Date Title
CN201510200380.8A CN104762301B (en) 2015-04-24 2015-04-24 A kind of kit and method for detecting liver cancer risk genes TSPYL5 methylation levels

Publications (2)

Publication Number Publication Date
CN104762301A CN104762301A (en) 2015-07-08
CN104762301B true CN104762301B (en) 2017-12-26

Family

ID=53644393

Family Applications (1)

Application Number Title Priority Date Filing Date
CN201510200380.8A Active CN104762301B (en) 2015-04-24 2015-04-24 A kind of kit and method for detecting liver cancer risk genes TSPYL5 methylation levels

Country Status (1)

Country Link
CN (1) CN104762301B (en)

Families Citing this family (10)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
KR101848803B1 (en) 2016-06-15 2018-04-17 한국원자력연구원 Method to block the growth of cancer stem cells via inhibiting the phosphorylation of 120th threonine residue in TSPYL5 and Peptide inhibitor and the use thereof
CN116064795A (en) * 2016-09-02 2023-05-05 梅约医学教育与研究基金会 Methods and kits for determining methylation status of differentially methylated regions
CN106916893A (en) * 2016-12-26 2017-07-04 中国科学院上海微系统与信息技术研究所 A kind of gene methylation degree quantitative approach based on digital pcr chip
CN106811523B (en) * 2017-01-17 2021-05-18 首都医科大学附属北京佑安医院 Methylation gene for screening liver cancer
CN109207618B (en) * 2017-06-30 2020-05-29 中国农业科学院植物保护研究所 Method and kit for determining methylation rate of target sequence in biological material
CN108103163A (en) * 2018-01-17 2018-06-01 湖南大地同年生物科技有限公司 A kind of detection method of gene methylation
CN108660217A (en) * 2018-07-09 2018-10-16 安徽达健医学科技有限公司 A kind of detection peripheral blood cells methylation state of DNA is used to analyze the kit of liver cancer
CN110257511A (en) * 2018-12-29 2019-09-20 武汉生命科技股份有限公司 A method of for detecting the quantitative fluorescent PCR of TSPYL5 gene methylation
CN113897434A (en) * 2021-11-02 2022-01-07 北京艾克伦医疗科技有限公司 Method and kit for identifying liver cancer status
CN116200499B (en) * 2023-03-23 2024-01-19 北京和瑞精湛医学检验实验室有限公司 Gene combination for liver cancer detection, related reagent and application

Non-Patent Citations (3)

* Cited by examiner, † Cited by third party
Title
Gene silencing of TSPYL5 mediated by aberrant promoter methylation in gastric cancers;Yeonjoo Jung et al.;《Laboratory Investigation》;20071203;第88卷(第2期);153-160 *
Genome-wide DNA Methylation Profiles in Hepatocellular Carcinoma;Jing Shen et al.;《Hepatology》;20120424;第55卷(第6期);1799-1808 *
Hypermethylation of ACP1, BMP4, and TSPYL5 in Hepatocellular Carcinoma and Their Potential Clinical Significance;Xueping Qiu et al.;《Dig Dis Sci》;20150919;第61卷(第6期);149-157 *

Also Published As

Publication number Publication date
CN104762301A (en) 2015-07-08

Similar Documents

Publication Publication Date Title
CN104762301B (en) A kind of kit and method for detecting liver cancer risk genes TSPYL5 methylation levels
CN106854679B (en) Methylated DNA detection method
Thirlwell et al. Genome-wide DNA methylation analysis of archival formalin-fixed paraffin-embedded tissue using the Illumina Infinium HumanMethylation27 BeadChip
Kitano et al. CpG island methylation of microRNAs is associated with tumor size and recurrence of non‐small‐cell lung cancer
Shojaei Saadi et al. An integrated platform for bovine DNA methylome analysis suitable for small samples
US20120208711A1 (en) Method for Analysis of DNA Methylation Profiles of Cell-Free Circulating DNA in Bodily Fluids
CN106687600B (en) Method for methylation analysis
US20100273151A1 (en) Genome-wide analysis of palindrome formation and dna methylation
EP2420578A1 (en) A method for screening cancer
CN104450872A (en) High-throughput multi-sample multi-target sing-base resolution methylation level detection method
Seeliger et al. CpG island methylation patterns in chronic lymphocytic leukemia
White-Al Habeeb et al. Integrated analysis of epigenomic and genomic changes by DNA methylation dependent mechanisms provides potential novel biomarkers for prostate cancer
AU2015336938B2 (en) Genome methylation analysis
CN116219020B (en) Methylation reference gene and application thereof
CN109385465B (en) DNA methylation quantitative system
CN105441558A (en) Primer probe system for MGMT (O&lt;6&gt;-methylguanine-DNA methyhransferase) gene methylation detection and kit adopting primer probe system
US20200283840A1 (en) Epigenetic discrimination of dna
EP3168310A1 (en) Methylation markers for colorectal cancer
CN109337973B (en) Primer design method, primer, kit, method and system for verifying copy number variation of specific DNA fragment
CN105441554A (en) Primer probe system for SEPT9 (septin-9) gene methylation detection and kit adopting primer probe system
EP3842552A1 (en) Kit for in vitro testing panel of genes in pap smear samples for endometriosis and method of non-invasively and qualitatively determining severity of endometriosis
CN114507719A (en) Quantitative analysis method for DNA methylation monitoring
Murphy et al. Main principles and outcomes of DNA methylation analysis
CN105441557A (en) Primer probe system for MLH1 (MutL homolog1) gene methylation detection and kit adopting primer probe system
CN105441555A (en) Primer probe system for MLH1 (MutL homolog1) gene promoter methylation detection and kit adopting primer probe system

Legal Events

Date Code Title Description
C06 Publication
PB01 Publication
EXSB Decision made by sipo to initiate substantive examination
SE01 Entry into force of request for substantive examination
GR01 Patent grant