Detect the method for BCL2L11 gene pleiomorphism
Technical field:
The present invention relates to biotechnology and medical field, molecular biology especially, polymerase chain reaction.
Background technology:
Tyrosine kinase inhibitor (TKI) is an important class anticancer targeting medicine, in the unusual oncotherapy of kinases, be widely applied, and effect is very good, such as the chronic myelocytic leukemia (CML) of breaking point bunch Ji Qu-cell abl oncogene (BCR-ABL) fusion, the nonsmall-cell lung cancer (NSCLC) of EGF-R ELISA (Epidermal growth factor receptor, EGFR) exons 1 9/21 sudden change.But along with the crowd's of use continuous increase, find to have the patient treatment effect of portion gene sudden change not remarkable, effect is fine when perhaps having some patients were to begin, but along with treatment is carried out, the effect of medicine weakens gradually.Wherein the T790M of EGFR extron 20 sudden change is the important reason that causes drug resistance, continuous expansion along with research, find EGF-R ELISA (Epidermal growth factor receptor, EGFR) other sudden changes of path also can cause drug effect, such as kirsten rat sarcoma virus proto-oncogene (Kirsten rat sarcoma viral oncogene homolog, kras) codon 12,13,61 sudden changes, echinoderms microtubule sample albumen 4-anaplastic lymphoma receptor tyrosine kinase (EML4-ALK) fusion etc.Certainly, it below all is the special sudden change of cancer cells, and B-Cell Chronic Lymphocytic Leukemia/lymphoma-2 sample 11(BCL2L11) also the tolerance with the TKI medicine is relevant for gene (having another name called BIM) polymorphism, and it belongs to germline mutation, just can carry out by the atraumatic detection, can judge to the suitability of TKI medicine in early days that treatment cost is saved in more effective treatment.
The BIM gene is apoptosis-related genes, participates in the apoptotic process that TKI induces.When being suppressed of BIM, the effect of meeting remarkably influenced TKI when expression level reduces.The polymorphism of BIM refer in its gene intron 2 can disappearance 2903bp dna sequence dna, cause the splicing mistake of BIM exon 3 and 4, obtain incomplete protein, make the BIM can not functionating.Incomplete statistics, this polymorphism has reached 12.3% in the crowd of East Asia, but does not also find this kind variation in Africa and European crowd.
About the detection of BIM gene pleiomorphism, relevant patent does not also have at present, and bibliographical information is also very limited.The detection method that adopts in the existing report is the dna sequence dna that needs one section 4226bp of amplification, and still, long sequence like this is in actually operating and be not easy realization, and failed probability is very high, can not be developed as the stable detection means of BIM gene pleiomorphism.And in the time can only obtaining person under inspection's paraffin-embedded tissue, its DNA has been fractured into the following small segment of 500bp owing to living through the processing of chemical reagent, can't adopt this kind method to detect.
In view of above problem, a kind of invention of method for quick new, that operating performance is higher is imperative.
Summary of the invention:
The technical problem to be solved in the present invention mainly is:
The polymorphism of BIM refer in its gene intron 2 can disappearance 2903bp dna sequence dna, cause the splicing mistake of BIM exon 3 and 4, obtain incomplete protein, make the BIM can not functionating.
The detection method that adopts in the existing report is the dna sequence dna that needs one section 4226bp of amplification, and still, long sequence like this is in actually operating and be not easy realization, and failed probability is very high, can not be developed as the stable detection means of BIM gene pleiomorphism.
And in the time can only obtaining person under inspection's paraffin-embedded tissue, its DNA has been fractured into the following small segment of 500bp owing to living through the processing of chemical reagent, can't adopt this kind method to detect.
In order to overcome the above problems, the technology of the present invention provides a kind of method of the BCL2L11 of detection gene pleiomorphism, and it comprises following performing step:
Designed two pairs of primers, mutant primer and wild-type primer, pair of primers are crossed over the disappearance zone of 2903bp, when this fragment does not lack, and experiment condition limited reactions, the fragment of the length like this that can not increase; When this fragment deletion, can amplify the fragment of a 261bp;
Pair of primers when this fragment does not lack, can amplify the fragment of a 365bp in the disappearance zone of 2903bp in addition.
The wild-type primer sequence of described amplification is:
Forward primer wmF:CAGAACAGACACTGGAACAAAATGA
Reverse primer wR:GGGAGCATTTTCATGAGTACAACAA
The mutant primer sequence of described amplification is:
Forward primer wmF:CAGAACAGACACTGGAACAAAATGA(is identical with wild-type F)
Reverse primer mR:GGTGGCCATACAAATCTAAGCCAG
Described concrete treatment step is as follows:
Sample process is got peripheral blood 2ml in the EDTA anticoagulant tube, gently puts upside down mixing, 4 ℃ of preservations;
DNA extraction is got 200 μ L anticoagulations and is extracted DNA with test kit, adopts the running gel imaging that DNA purity and concentration are detected;
The configuration of reaction system is in the certain reaction system of the aerial adding of each reaction;
Increase by certain program;
The electrophoresis detection amplification.
Below the described reaction system:
Describedly increase by following program:
95℃3min
94 ℃ of 30sec → (50-60 ℃) all right 30sec → 72 ℃ 30sec, 40 circulations
72℃5min→4℃
Described electrophoresis detection amplification step is as follows: join 2% sepharose, get 9 μ L(3) loading behind the product of amplification and the 10 times of concentration sample-loading buffer mixings, 120V electrophoresis 30min, ultraviolet judgement PCR result; When fragment deletion, can amplify the fragment of a 261bp; When this fragment does not lack, can amplify the fragment of a 365bp; If 261bp and 365bp product exist simultaneously, this sample is heterozygote.
The invention has the beneficial effects as follows: this technology two different products that in same reaction system, increase simultaneously, identify the sample genotype.And expanding fragment length is moderate, and the amplification condition wide scope uses instrument simple.
Description of drawings:
Fig. 1 is the schematic diagram of three primer positions of the present invention;
Embodiment:
The present invention is applied to biotechnology and medical field, molecular biology especially, molecular diagnosis, Real-time quantitative PCR.
As shown in Figure 1, the present invention has designed two pairs of primers in order to overcome the above problems, and pair of primers is crossed over the disappearance zone of this 2903bp, when this fragment does not lack, and experiment condition limited reactions, the fragment of the length like this that can not increase; When this fragment deletion, can amplify the fragment of a 261bp.
Pair of primers when this fragment does not lack, can amplify the fragment of a 365bp in the zone of this 2903bp in addition;
Amplification wild-type primer sequence:
Forward primer wmF:CAGAACAGACACTGGAACAAAATGA
Reverse primer wR:GGGAGCATTTTCATGAGTACAACAA
Amplification mutant primer sequence:
Forward primer wmF:CAGAACAGACACTGGAACAAAATGA(is identical with wild-type F)
Reverse primer mR:GGTGGCCATACAAATCTAAGCCAG
Concrete treatment step is as follows:
(6) sample process
Get peripheral blood 2ml in the EDTA anticoagulant tube, gently put upside down mixing, 4 ℃ of preservations.
(2) DNA extraction
Get 200 μ L anticoagulations and extract DNA with Q IAmp DNA Blood Mini Kit test kit.Adopt the running gel imaging that DNA purity and concentration are detected;
(3) configuration of reaction system
Add following reaction system (PCR reagent is bought from TaKaRa) in the air in each reaction:
(4) increase by following program:
95℃3min
94 ℃ of 30sec → (50-60 ℃) all right 30sec → 72 ℃ 30sec, 40 circulations
72℃5min→4℃
(5) electrophoresis detection amplification
Join 2% sepharose, get 9 μ L(3) loading behind the product of amplification and the 10 times of concentration sample-loading buffer mixings, 120V electrophoresis 30min, ultraviolet judgement PCR result.When fragment deletion, can amplify the fragment of a 261bp; When this fragment does not lack, can amplify the fragment of a 365bp; If 261bp and 365bp product exist simultaneously, this sample is heterozygote.
This technology two different products that increase simultaneously in same reaction system are identified the sample genotype.And expanding fragment length is moderate, and the amplification condition wide scope uses instrument simple.
Compare with other method, the technology of the present invention has high specific, highly sensitive and advantage conveniently; And flux is higher, and the single cost is lower!
The description of above preferred embodiment makes those skilled in the art can make or use the present invention.The various modifications of these embodiment are apparent for a person skilled in the art, and the General Principle of definition can be applied among other embodiment and do not deviate from the spirit or scope of the present invention here.Therefore, the present invention is not limited to shown here embodiment, and will meet the most wide in range scope consistent with the principle that discloses and novel feature here.