CN102912022A - Method for detecting polymorphism of BCL2L11 gene - Google Patents

Method for detecting polymorphism of BCL2L11 gene Download PDF

Info

Publication number
CN102912022A
CN102912022A CN2012104081189A CN201210408118A CN102912022A CN 102912022 A CN102912022 A CN 102912022A CN 2012104081189 A CN2012104081189 A CN 2012104081189A CN 201210408118 A CN201210408118 A CN 201210408118A CN 102912022 A CN102912022 A CN 102912022A
Authority
CN
China
Prior art keywords
fragment
primer
primers
amplification
amplify
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Granted
Application number
CN2012104081189A
Other languages
Chinese (zh)
Other versions
CN102912022B (en
Inventor
赵新泰
王明
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Shandong Guojiutang Pharmaceutical Group Co ltd
Original Assignee
Shanghai Saian Biological Medical Technology Co Ltd
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Shanghai Saian Biological Medical Technology Co Ltd filed Critical Shanghai Saian Biological Medical Technology Co Ltd
Priority to CN201210408118.9A priority Critical patent/CN102912022B/en
Publication of CN102912022A publication Critical patent/CN102912022A/en
Application granted granted Critical
Publication of CN102912022B publication Critical patent/CN102912022B/en
Expired - Fee Related legal-status Critical Current
Anticipated expiration legal-status Critical

Links

Images

Landscapes

  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)

Abstract

The invention provides a method for detecting polymorphism of a BCL2L11 gene. The method is characterized by comprising steps as follows: two pairs of primers are designed, namely a mutant type primer and a wild type primer; one pair of primers crosses a 2903bp deletion region, when a fragment is not deleted, a reaction is limited based on an experimental condition, so that a long fragment cannot be amplified; when the fragment is deleted, one 261bp fragment can be amplified; and another pair of primers crosses the 2903bp deletion region, when the fragment is not deleted, and one 365bp fragment can be amplified. According to the technology, two different products can be amplified in one same reaction system, so that a type of the gene of a sample can be identified; the amplified fragments are moderate in length, and an amplification condition is wide in range, and a used instrument is simple.

Description

Detect the method for BCL2L11 gene pleiomorphism
Technical field:
The present invention relates to biotechnology and medical field, molecular biology especially, polymerase chain reaction.
Background technology:
Tyrosine kinase inhibitor (TKI) is an important class anticancer targeting medicine, in the unusual oncotherapy of kinases, be widely applied, and effect is very good, such as the chronic myelocytic leukemia (CML) of breaking point bunch Ji Qu-cell abl oncogene (BCR-ABL) fusion, the nonsmall-cell lung cancer (NSCLC) of EGF-R ELISA (Epidermal growth factor receptor, EGFR) exons 1 9/21 sudden change.But along with the crowd's of use continuous increase, find to have the patient treatment effect of portion gene sudden change not remarkable, effect is fine when perhaps having some patients were to begin, but along with treatment is carried out, the effect of medicine weakens gradually.Wherein the T790M of EGFR extron 20 sudden change is the important reason that causes drug resistance, continuous expansion along with research, find EGF-R ELISA (Epidermal growth factor receptor, EGFR) other sudden changes of path also can cause drug effect, such as kirsten rat sarcoma virus proto-oncogene (Kirsten rat sarcoma viral oncogene homolog, kras) codon 12,13,61 sudden changes, echinoderms microtubule sample albumen 4-anaplastic lymphoma receptor tyrosine kinase (EML4-ALK) fusion etc.Certainly, it below all is the special sudden change of cancer cells, and B-Cell Chronic Lymphocytic Leukemia/lymphoma-2 sample 11(BCL2L11) also the tolerance with the TKI medicine is relevant for gene (having another name called BIM) polymorphism, and it belongs to germline mutation, just can carry out by the atraumatic detection, can judge to the suitability of TKI medicine in early days that treatment cost is saved in more effective treatment.
The BIM gene is apoptosis-related genes, participates in the apoptotic process that TKI induces.When being suppressed of BIM, the effect of meeting remarkably influenced TKI when expression level reduces.The polymorphism of BIM refer in its gene intron 2 can disappearance 2903bp dna sequence dna, cause the splicing mistake of BIM exon 3 and 4, obtain incomplete protein, make the BIM can not functionating.Incomplete statistics, this polymorphism has reached 12.3% in the crowd of East Asia, but does not also find this kind variation in Africa and European crowd.
About the detection of BIM gene pleiomorphism, relevant patent does not also have at present, and bibliographical information is also very limited.The detection method that adopts in the existing report is the dna sequence dna that needs one section 4226bp of amplification, and still, long sequence like this is in actually operating and be not easy realization, and failed probability is very high, can not be developed as the stable detection means of BIM gene pleiomorphism.And in the time can only obtaining person under inspection's paraffin-embedded tissue, its DNA has been fractured into the following small segment of 500bp owing to living through the processing of chemical reagent, can't adopt this kind method to detect.
In view of above problem, a kind of invention of method for quick new, that operating performance is higher is imperative.
Summary of the invention:
The technical problem to be solved in the present invention mainly is:
The polymorphism of BIM refer in its gene intron 2 can disappearance 2903bp dna sequence dna, cause the splicing mistake of BIM exon 3 and 4, obtain incomplete protein, make the BIM can not functionating.
The detection method that adopts in the existing report is the dna sequence dna that needs one section 4226bp of amplification, and still, long sequence like this is in actually operating and be not easy realization, and failed probability is very high, can not be developed as the stable detection means of BIM gene pleiomorphism.
And in the time can only obtaining person under inspection's paraffin-embedded tissue, its DNA has been fractured into the following small segment of 500bp owing to living through the processing of chemical reagent, can't adopt this kind method to detect.
In order to overcome the above problems, the technology of the present invention provides a kind of method of the BCL2L11 of detection gene pleiomorphism, and it comprises following performing step:
Designed two pairs of primers, mutant primer and wild-type primer, pair of primers are crossed over the disappearance zone of 2903bp, when this fragment does not lack, and experiment condition limited reactions, the fragment of the length like this that can not increase; When this fragment deletion, can amplify the fragment of a 261bp;
Pair of primers when this fragment does not lack, can amplify the fragment of a 365bp in the disappearance zone of 2903bp in addition.
The wild-type primer sequence of described amplification is:
Forward primer wmF:CAGAACAGACACTGGAACAAAATGA
Reverse primer wR:GGGAGCATTTTCATGAGTACAACAA
The mutant primer sequence of described amplification is:
Forward primer wmF:CAGAACAGACACTGGAACAAAATGA(is identical with wild-type F)
Reverse primer mR:GGTGGCCATACAAATCTAAGCCAG
Described concrete treatment step is as follows:
Sample process is got peripheral blood 2ml in the EDTA anticoagulant tube, gently puts upside down mixing, 4 ℃ of preservations;
DNA extraction is got 200 μ L anticoagulations and is extracted DNA with test kit, adopts the running gel imaging that DNA purity and concentration are detected;
The configuration of reaction system is in the certain reaction system of the aerial adding of each reaction;
Increase by certain program;
The electrophoresis detection amplification.
Below the described reaction system:
Figure BDA00002297064500041
Describedly increase by following program:
95℃3min
94 ℃ of 30sec → (50-60 ℃) all right 30sec → 72 ℃ 30sec, 40 circulations
72℃5min→4℃
Described electrophoresis detection amplification step is as follows: join 2% sepharose, get 9 μ L(3) loading behind the product of amplification and the 10 times of concentration sample-loading buffer mixings, 120V electrophoresis 30min, ultraviolet judgement PCR result; When fragment deletion, can amplify the fragment of a 261bp; When this fragment does not lack, can amplify the fragment of a 365bp; If 261bp and 365bp product exist simultaneously, this sample is heterozygote.
The invention has the beneficial effects as follows: this technology two different products that in same reaction system, increase simultaneously, identify the sample genotype.And expanding fragment length is moderate, and the amplification condition wide scope uses instrument simple.
Description of drawings:
Fig. 1 is the schematic diagram of three primer positions of the present invention;
Embodiment:
The present invention is applied to biotechnology and medical field, molecular biology especially, molecular diagnosis, Real-time quantitative PCR.
As shown in Figure 1, the present invention has designed two pairs of primers in order to overcome the above problems, and pair of primers is crossed over the disappearance zone of this 2903bp, when this fragment does not lack, and experiment condition limited reactions, the fragment of the length like this that can not increase; When this fragment deletion, can amplify the fragment of a 261bp.
Pair of primers when this fragment does not lack, can amplify the fragment of a 365bp in the zone of this 2903bp in addition;
Amplification wild-type primer sequence:
Forward primer wmF:CAGAACAGACACTGGAACAAAATGA
Reverse primer wR:GGGAGCATTTTCATGAGTACAACAA
Amplification mutant primer sequence:
Forward primer wmF:CAGAACAGACACTGGAACAAAATGA(is identical with wild-type F)
Reverse primer mR:GGTGGCCATACAAATCTAAGCCAG
Concrete treatment step is as follows:
(6) sample process
Get peripheral blood 2ml in the EDTA anticoagulant tube, gently put upside down mixing, 4 ℃ of preservations.
(2) DNA extraction
Get 200 μ L anticoagulations and extract DNA with Q IAmp DNA Blood Mini Kit test kit.Adopt the running gel imaging that DNA purity and concentration are detected;
(3) configuration of reaction system
Add following reaction system (PCR reagent is bought from TaKaRa) in the air in each reaction:
Figure BDA00002297064500061
Figure BDA00002297064500071
(4) increase by following program:
95℃3min
94 ℃ of 30sec → (50-60 ℃) all right 30sec → 72 ℃ 30sec, 40 circulations
72℃5min→4℃
(5) electrophoresis detection amplification
Join 2% sepharose, get 9 μ L(3) loading behind the product of amplification and the 10 times of concentration sample-loading buffer mixings, 120V electrophoresis 30min, ultraviolet judgement PCR result.When fragment deletion, can amplify the fragment of a 261bp; When this fragment does not lack, can amplify the fragment of a 365bp; If 261bp and 365bp product exist simultaneously, this sample is heterozygote.
This technology two different products that increase simultaneously in same reaction system are identified the sample genotype.And expanding fragment length is moderate, and the amplification condition wide scope uses instrument simple.
Compare with other method, the technology of the present invention has high specific, highly sensitive and advantage conveniently; And flux is higher, and the single cost is lower!
The description of above preferred embodiment makes those skilled in the art can make or use the present invention.The various modifications of these embodiment are apparent for a person skilled in the art, and the General Principle of definition can be applied among other embodiment and do not deviate from the spirit or scope of the present invention here.Therefore, the present invention is not limited to shown here embodiment, and will meet the most wide in range scope consistent with the principle that discloses and novel feature here.

Claims (7)

1. a method that detects the BCL2L11 gene pleiomorphism is characterized in that, it comprises following performing step:
Designed two pairs of primers, mutant primer and wild-type primer, pair of primers are crossed over the disappearance zone of 2903bp, when this fragment does not lack, and experiment condition limited reactions, the fragment of the length like this that can not increase; When this fragment deletion, can amplify the fragment of a 261bp;
Pair of primers when this fragment does not lack, can amplify the fragment of a 365bp in the disappearance zone of 2903bp in addition.
2. method according to claim 1, it is characterized in that: the wild-type primer sequence of described amplification is:
Forward primer wmF:CAGAACAGACACTGGAACAAAATGA
Reverse primer wR:GGGAGCATTTTCATGAGTACAACAA.
3. method according to claim 1, it is characterized in that: the mutant primer sequence of described amplification is:
Forward primer wmF:CAGAACAGACACTGGAACAAAATGA(is identical with wild-type F)
Reverse primer mR:GGTGGCCATACAAATCTAAGCCAG.
4. method according to claim 1, it is characterized in that: described concrete treatment step is as follows:
(1) sample process is got peripheral blood 2ml in the EDTA anticoagulant tube, gently puts upside down mixing, 4 ℃ of preservations;
(2) DNA extraction is got 200 μ L anticoagulations and is extracted DNA with test kit, adopts the running gel imaging that DNA purity and concentration are detected;
(3) configuration of reaction system is in the certain reaction system of the aerial adding of each reaction;
(4) increase by certain program;
(5) electrophoresis detection amplification.
5. method according to claim 4, it is characterized in that: described reaction system is as follows:
6. method according to claim 4 is characterized in that: describedly increase by following program:
95℃3min
94 ℃ of 30sec → (50-60 ℃) all right 30sec → 72 ℃ 30sec, 40 circulations
72℃5min→4℃。
7. method according to claim 4, it is characterized in that: described electrophoresis detection amplification step is as follows: join 2% sepharose, get 9 μ L(3) loading behind the product of amplification and the 10 times of concentration sample-loading buffer mixings, 120V electrophoresis 30min, ultraviolet judgement PCR result; When fragment deletion, can amplify the fragment of a 261bp; When this fragment does not lack, can amplify the fragment of a 365bp; If 261bp and 365bp product exist simultaneously, this sample is heterozygote.
CN201210408118.9A 2012-10-24 2012-10-24 Method for detecting polymorphism of BCL2L11 gene Expired - Fee Related CN102912022B (en)

Priority Applications (1)

Application Number Priority Date Filing Date Title
CN201210408118.9A CN102912022B (en) 2012-10-24 2012-10-24 Method for detecting polymorphism of BCL2L11 gene

Applications Claiming Priority (1)

Application Number Priority Date Filing Date Title
CN201210408118.9A CN102912022B (en) 2012-10-24 2012-10-24 Method for detecting polymorphism of BCL2L11 gene

Publications (2)

Publication Number Publication Date
CN102912022A true CN102912022A (en) 2013-02-06
CN102912022B CN102912022B (en) 2014-05-28

Family

ID=47610597

Family Applications (1)

Application Number Title Priority Date Filing Date
CN201210408118.9A Expired - Fee Related CN102912022B (en) 2012-10-24 2012-10-24 Method for detecting polymorphism of BCL2L11 gene

Country Status (1)

Country Link
CN (1) CN102912022B (en)

Cited By (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN112391465A (en) * 2019-08-19 2021-02-23 宁波爱她基因科技有限公司 Multi-gene mutation detection kit for lung cancer

Non-Patent Citations (1)

* Cited by examiner, † Cited by third party
Title
KING PAN NG ET AL: "A comon BIM deletion polymorphism mediates intrinsic resistance and inferior responses to tyrosine kinase inhibititors in cancer", 《NATURE MEDICINE》 *

Cited By (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN112391465A (en) * 2019-08-19 2021-02-23 宁波爱她基因科技有限公司 Multi-gene mutation detection kit for lung cancer

Also Published As

Publication number Publication date
CN102912022B (en) 2014-05-28

Similar Documents

Publication Publication Date Title
Xu et al. Circulating tumor DNA identified by targeted sequencing in advanced-stage non-small cell lung cancer patients
CN108048531B (en) Ultra-blocking fluorescent quantitative PCR method for detecting rare mutation with high sensitivity
JP7191140B2 (en) TERT promoter mutations in a subset of gliomas and tumors
Borczuk et al. Genome-wide analysis of abdominal and pleural malignant mesothelioma with DNA arrays reveals both common and distinct regions of copy number alteration
Hostetler et al. Independent origin and global distribution of distinct Plasmodium vivax Duffy binding protein gene duplications
CN104293913B (en) Multipoint mutation single tube method for quick and test kit
CN104450948B (en) Method for detecting cancer, kit and its application
CN110343748B (en) Method for analyzing tumor mutation load based on high-throughput targeted sequencing
CN104774962A (en) Kit for detecting BRAF gene mutation and detecting method thereof
CN104561250A (en) Method and primer for detecting imatinib targeted medication gene
Mariani et al. Concordant analysis of KRAS status in primary colon carcinoma and matched metastasis
Youssef et al. Hotspot mutations detectable by next-generation sequencing in exhaled breath condensates from patients with lung cancer
CN104017887A (en) Primer pair as well as probe and kit for detecting human BRAF gene mutation
JP2023505031A (en) Methods and compositions for cancer analysis
CN105803076A (en) Specific primer and probe for detecting T790M locus of EGFR gene
CN104480215B (en) A kind of gene association detection method and test kit
CN102912022B (en) Method for detecting polymorphism of BCL2L11 gene
CN103103284B (en) Kit for quantitatively detecting IKZF1 gene mutation
CN111118119A (en) Method for detecting target mutation by carrying out retardation substitution amplification enrichment based on blocker introducing extra base mismatch
CN107385066A (en) Detect primer pair, kit, detection method and the application of EGFR genetic mutation
Setty et al. Sensitive determination of BRAF copy number in clinical samples by pyrosequencing
CN109554475A (en) Gene mutation/fusion combination and kit for Lung neoplasm malignant and benign lesion
Mäki-Nevala et al. Concordant results of epidermal growth factor receptor mutation detection by real-time polymerase chain reaction and ion torrent technology in non-small cell lung cancer
Hernández et al. Novel multiplex RT-PCR/RFLP diagnostic test to differentiate low-from high-pathogenic strains and to detect reassortant infectious bursal disease virus
CN103898232B (en) A kind of method detecting low abundant species and change

Legal Events

Date Code Title Description
C06 Publication
PB01 Publication
C10 Entry into substantive examination
SE01 Entry into force of request for substantive examination
C14 Grant of patent or utility model
GR01 Patent grant
TR01 Transfer of patent right

Effective date of registration: 20201111

Address after: 274000 No. 2888 Zhonghua West Road, hi tech Zone, Shandong, Heze

Patentee after: GUOJIUTANG SHANDONG DONKEY-HIDE GELATIN Co.,Ltd.

Address before: Room 209d, 668 SHANGDA Road, Baoshan District, Shanghai

Patentee before: SHANGHAI SHINES PHARMACEUTICAL Co.,Ltd.

TR01 Transfer of patent right
CP01 Change in the name or title of a patent holder

Address after: No.2888, Zhonghua West Road, hi tech Zone, Heze City, Shandong Province 274000

Patentee after: Shandong Guojiutang Pharmaceutical Group Co.,Ltd.

Address before: No.2888, Zhonghua West Road, hi tech Zone, Heze City, Shandong Province 274000

Patentee before: GUOJIUTANG SHANDONG DONKEY-HIDE GELATIN CO.,LTD.

CP01 Change in the name or title of a patent holder
CF01 Termination of patent right due to non-payment of annual fee

Granted publication date: 20140528