CN102800089B - Main carotid artery blood vessel extraction and thickness measuring method based on neck ultrasound images - Google Patents
Main carotid artery blood vessel extraction and thickness measuring method based on neck ultrasound images Download PDFInfo
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Abstract
本发明公开了一种基于颈部超声图像的主颈动脉血管提取和厚度测量方法,具体为:读取颈部超声三维体数据,基于主颈动脉分叉点标记主颈动脉中轴;对颈部超声三维体数据按三视图方向,依次投影切分得到二维横断面、冠状面和矢状面序列图像;分别对二维横断面、冠状面和矢状面序列图像做预处理、分割、重建或内中膜厚度统计,得到最终的颈部超声主颈动脉血管壁内外轮廓和血管壁厚度等相关信息。本发明克服现有计算机辅助诊断中血管分割方法计算复杂度大,不能准确测量血管管壁厚度,主观因素易造成误差等缺点,能够完整、快速、准确地得到颈部超声主颈动脉血管壁内外轮廓和血管壁厚度。本发明与手动分割方法相比,操作快捷,可用于颈部粥样硬化以及心血管疾病的辅助诊断和防治。
The invention discloses a method for extracting and measuring the thickness of the main carotid artery based on the ultrasound image of the neck, specifically: reading the ultrasound three-dimensional volume data of the neck, and marking the central axis of the main carotid artery based on the bifurcation point of the main carotid artery; According to the three-view direction, the three-dimensional volume data of the internal ultrasound is sequentially projected and segmented to obtain two-dimensional cross-sectional, coronal and sagittal plane sequence images; preprocessing, segmentation, and Reconstruction or intima-media thickness statistics to obtain the final cervical ultrasound aortocarotid artery wall inner and outer contours and vessel wall thickness and other related information. The present invention overcomes the disadvantages of the existing computer-aided diagnosis blood vessel segmentation method, such as the large calculation complexity, the inability to accurately measure the thickness of the blood vessel wall, and the subjective factors that easily cause errors, etc., and can completely, quickly and accurately obtain the inside and outside of the main carotid artery wall by neck ultrasound. Contour and vessel wall thickness. Compared with the manual segmentation method, the invention has quick operation and can be used for auxiliary diagnosis and prevention of cervical atherosclerosis and cardiovascular diseases.
Description
技术领域 technical field
本发明属于生物医学工程和图像处理交叉领域,具体涉及一种基于颈部超声图像的主颈动脉血管提取和厚度测量方法。The invention belongs to the cross field of biomedical engineering and image processing, and in particular relates to a method for extracting and measuring the thickness of a main carotid artery based on ultrasound images of the neck.
背景技术 Background technique
世界卫生组织最新统计数据显示,心血管疾病(Cardiovascular Diseases,CVDs)是世界上三大致死疾病之一。动脉血管壁增厚、形成斑块,进而导致血管狭窄,是动脉粥样硬化的典型病征之一。颈动脉粥样硬化是一种能引发心脏病、中风的心脑血管疾病,严重危害了人类身体健康。因此,对其早期预防、诊断、治疗和监控有着重要意义。According to the latest statistics from the World Health Organization, cardiovascular disease (Cardiovascular Diseases, CVDs) is one of the three leading causes of death in the world. Arterial wall thickening, plaque formation, and narrowing of blood vessels is one of the typical symptoms of atherosclerosis. Carotid atherosclerosis is a cardiovascular and cerebrovascular disease that can cause heart disease and stroke, and seriously endangers human health. Therefore, its early prevention, diagnosis, treatment and monitoring are of great significance.
2010年1月20日,美国心脏学会(American Heart Association,AHA)战略规划工作委员会发布的十年健康战略目标,即AHA 2020健康战略——《定义和制定促进心血管健康和减少疾病的国家目标》,首次提出“以改善健康水平为主要目标”,标志着美国心脏学会AHA将心血管疾病CVDs的预防战线进一步前移,不仅针对已具有危险因素的高危人群和患病人群,而且要改善普通人群的健康水平。研究表明,预防和控制心血管疾病CVDs的关键是早检测、早治疗。因此,对动脉粥样硬化的早期检测与防治,对降低心血管疾病CVDs死亡率有着极其重要的临床意义。On January 20, 2010, the American Heart Association (AHA) Strategic Planning Working Committee released the ten-year health strategic goals, that is, the AHA 2020 Health Strategy - "Defining and Developing National Targets for Promoting Cardiovascular Health and Reducing Diseases" ", for the first time put forward "to improve the health level as the main goal", which marks that the American Heart Association (AHA) has further moved forward the prevention front of cardiovascular disease CVDs, not only for high-risk groups and diseased groups with risk factors, but also to improve the common The health level of the population. Studies have shown that the key to the prevention and control of cardiovascular disease CVDs is early detection and early treatment. Therefore, the early detection and prevention of atherosclerosis has extremely important clinical significance for reducing the mortality rate of cardiovascular diseases and CVDs.
主颈动脉(Common Carotid Artery,CCA)的血管壁增厚程度可作为衡量病变的重要指标。超声成像技术所特有的“实时、经济、可靠、安全”优点,使得基于该技术的内中膜厚度(Intima-media Thickness,IMT)成为评估颈动脉粥样硬化程度的常用指标之一。超声图像血管提取和厚度测量成为近年的研究热点。The thickness of the vessel wall of the common carotid artery (CCA) can be used as an important index to measure the lesion. The unique advantages of "real-time, economical, reliable, and safe" ultrasound imaging technology make intima-media thickness (IMT) based on this technology one of the commonly used indicators for evaluating the degree of carotid atherosclerosis. Ultrasound image vessel extraction and thickness measurement has become a research hotspot in recent years.
首先,就血管提取而言,中国专利申请号为200910106119.6和201010297322.9的两个专利提出了超声图像血管提取的方法,前者针对非序列单张二维超声血管灰度图像,后者应用于血管内超声序列图像,两者均缺乏最终详细的血管信息。如:未针对序列图像有针对性地完成分割和方法评价等工作、无法根据主颈动脉CCA内部解剖结构获得最接近真实的血管厚度值、在国产超声机软件升级换代中难以产业化应用。First of all, as far as blood vessel extraction is concerned, two patents with Chinese patent application numbers of 200910106119.6 and 201010297322.9 propose a method for blood vessel extraction from ultrasound images. The former is aimed at non-sequential single 2D ultrasound blood vessel grayscale images, and the latter is applied to intravascular ultrasound sequence images , both of which lack final detailed vascular information. For example, segmentation and method evaluation were not done in a targeted manner for sequence images, the closest real blood vessel thickness value could not be obtained according to the internal anatomy of the aorta carotid artery CCA, and it was difficult to apply industrially in the upgrading of domestic ultrasound machine software.
其次,就厚度测量而言,CULEX(Completely User-independent LayerExtraction)和CALEX(Completely Automatic Layer Extraction)为目前最新颖、最智能的厚度测量方法。两者均可以达到全自动厚度测量,但实现难度大、计算复杂度高。CULEX和CALEX利用不一样的图像特征,采用完全不同的思想——前者利用图像像素的局部统计值来分辨血管腔内像素和组织像素,分割方法则是基于梯度和活动模型的结合;而后者集特征提取、线性拟合和分类于一体。对比两种方法的分割效果可以看出,CALEX对血管腔-内膜LI轮廓的分割不完整,但对中膜-外膜MA轮廓的分割优于CULEX;同时CULEX受图像噪声和图像伪影影响较大,而且CALEX的执行效率远高于CULEX。Secondly, in terms of thickness measurement, CULEX (Completely User-independent Layer Extraction) and CALEX (Completely Automatic Layer Extraction) are currently the most innovative and intelligent thickness measurement methods. Both can achieve fully automatic thickness measurement, but the implementation is difficult and the calculation complexity is high. CULEX and CALEX use different image features and adopt completely different ideas - the former uses the local statistics of image pixels to distinguish blood vessel lumen pixels and tissue pixels, and the segmentation method is based on the combination of gradient and activity models; while the latter integrates Feature extraction, linear fitting and classification all in one. Comparing the segmentation results of the two methods, it can be seen that CALEX is incomplete in the segmentation of the vascular lumen-intima LI contour, but better than CULEX in the segmentation of the media-adventitia MA contour; at the same time, CULEX is affected by image noise and image artifacts Larger, and the execution efficiency of CALEX is much higher than that of CULEX.
发明内容 Contents of the invention
本发明的目的在于提供一种能全方位、多角度、快速、准确且易于实现、操作方便的主颈动脉CCA血管提取和厚度测量方法。The purpose of the present invention is to provide an all-round, multi-angle, fast, accurate, easy-to-implement and easy-to-operate aortocarotid artery CCA blood vessel extraction and thickness measurement method.
基于颈部超声图像的主颈动脉血管提取和厚度测量方法,包括以下步骤:The method for extracting and measuring the thickness of the main carotid artery based on the ultrasonic image of the neck comprises the following steps:
读取颈部超声三维体数据,基于主颈动脉分叉点标记主颈动脉血管中心轴;Read the neck ultrasound three-dimensional volume data, and mark the central axis of the main carotid artery based on the bifurcation point of the main carotid artery;
依据中心轴,按三视图方向投影,切分颈部超声三维体数据,得到二维横断面、矢状面和冠状面序列图像;According to the central axis, according to the projection of the three-view direction, segment the cervical ultrasound three-dimensional volume data, and obtain two-dimensional cross-sectional, sagittal and coronal sequential images;
在二维横断面序列图像的每一张图像中,分别选取各主颈动脉血管感兴趣区域,并对各主颈动脉血管感兴趣区域预处理;在预处理后的各主颈动脉血管感兴趣区域中,分别分割得到各主颈动脉血管的内、外轮廓;依据各二维横断面图像的主颈动脉血管感兴趣区域的内、外轮廓,按其空间位置关系三维重建,得到三维主颈动脉血管轮廓;In each image of the two-dimensional cross-sectional sequence images, the region of interest of each aorta carotid artery is selected respectively, and the region of interest of each aorta carotid artery is preprocessed; In the region, the inner and outer contours of the main carotid vessels were obtained by segmentation respectively; according to the inner and outer contours of the regions of interest of the main carotid vessels in each two-dimensional cross-sectional image, the three-dimensional reconstruction was performed according to their spatial position relationship, and the three-dimensional main carotid artery was obtained. arterial vessel outline;
在二维矢状面序列图像的每一张图像中,分别选取各主颈动脉血管感兴趣区域,并对各主颈动脉血管感兴趣区域预处理;在预处理后的各主颈动脉血管感兴趣区域中,分别分割得到各主颈动脉血管的内、外轮廓;分别计算各主颈动脉血管的内、外轮廓之间的厚度即内中膜厚度;统计各二维矢状面图像的内中膜厚度均值;In each image of the two-dimensional sagittal plane sequence images, the regions of interest of the aorta carotid vessels are selected respectively, and the regions of interest of the aorta carotid vessels are preprocessed; In the region of interest, the inner and outer contours of each main carotid artery were segmented separately; the thickness between the inner and outer contours of each main carotid artery was calculated, that is, the intima-media thickness; the inner and outer contours of each two-dimensional sagittal image were counted. Median thickness mean;
在二维冠状面序列图像的每一张图像中,分别选取各主颈动脉血管感兴趣区域,并对各主颈动脉血管感兴趣区域预处理;在预处理后的各主颈动脉血管感兴趣区域中,分别分割得到各主颈动脉血管的内、外轮廓;分别计算各主颈动脉血管的内、外轮廓之间的厚度即内中膜厚度;统计计算各二维冠状面图像的内中膜厚度均值;In each image of the two-dimensional coronal sequence images, select the region of interest of each aorta carotid artery respectively, and preprocess each region of interest of the aorta carotid artery; In the region, the inner and outer contours of each main carotid artery were obtained by segmentation respectively; the thickness between the inner and outer contours of each main carotid blood vessel was calculated, that is, the intima-media thickness; the inner and outer contours of each two-dimensional coronal image were statistically calculated. Average film thickness;
进一步地,在所述二维横断面序列图像的每一张图像中的主颈动脉血管感兴趣区域中,按照如下方式分割得到各主颈动脉血管的内、外轮廓:Further, in the region of interest of the main carotid artery in each image of the two-dimensional cross-sectional sequence images, the inner and outer contours of each main carotid blood vessel are obtained by segmentation as follows:
A1、在二维横断面图像预处理后的主颈动脉血管感兴趣区域中,提取主颈动脉血管的内轮廓,并做平滑处理;A1. Extract the inner contour of the main carotid artery from the region of interest of the main carotid artery after the preprocessing of the two-dimensional cross-sectional image, and perform smoothing processing;
A2、依据主颈动脉血管的内轮廓进行椭圆拟合,将拟合得到的椭圆放大后,作为主颈动脉血管的初始外轮廓;A2. Carry out ellipse fitting according to the inner contour of the main carotid artery vessel, and enlarge the fitted ellipse as the initial outer contour of the main carotid artery vessel;
A3、依据主颈动脉血管的初始外轮廓,演化得到主颈动脉血管的最终外轮廓。A3. According to the initial outer contour of the main carotid artery, evolve to obtain the final outer contour of the main carotid artery.
所述步骤A1具体为:在二维横断面图像预处理后的主颈动脉血管感兴趣区域中,提取主颈动脉血管的圆心位置和半径,依据圆心位置和半径提取内轮廓。The step A1 specifically includes: extracting the center position and radius of the aorta carotid vessel in the region of interest of the aorta carotid vessel after the preprocessing of the two-dimensional cross-sectional image, and extracting the inner contour according to the center position and radius.
所述步骤A2中椭圆放大比例系数为1.02~1.08。The ellipse enlargement ratio coefficient in the step A2 is 1.02-1.08.
所述步骤A3采用的演化方法为Active Contour Model、GVF-Snake、FastMarching Method、Level Set、Sparse Field Algorithm任意一种。The evolution method adopted in the step A3 is any one of Active Contour Model, GVF-Snake, FastMarching Method, Level Set, and Sparse Field Algorithm.
进一步地,在所述二维矢状面序列图像的每一张图像中的主颈动脉血管感兴趣区域中,按照如下方式分割得到各主颈动脉血管的内、外轮廓:Further, in the region of interest of the main carotid artery in each image of the two-dimensional sagittal plane sequence images, the inner and outer contours of each main carotid blood vessel are obtained by segmentation as follows:
B1、对二维矢状面图像预处理后的主颈动脉血管感兴趣区域内的每一列的点,从上到下依次进行序号标记作为每一列点的索引值;B1. For each row of points in the region of interest of the main carotid artery after the preprocessing of the two-dimensional sagittal plane image, the serial number is sequentially marked from top to bottom as the index value of each row of points;
B2、感兴趣区域的粗分割:B2. Coarse segmentation of the region of interest:
B21、获取下边界轮廓DB:从左到右,顺序扫描二维矢状面图像的主颈动脉血管感兴趣区域的每一列,获得每一列的最大灰度值、最小灰度值以及满足阈值条件的下边界候选点;在下边界候选点中,标记索引值最大的点作为唯一下边界轮廓点;顺次连接所有下边界轮廓点构成下边界轮廓DB;下边界候选点灰度值GVcandi应满足的灰度阈值条件为:GVcandidate≥a×ΔGV+GVmin=a×(GVmax-GVmin)+GVmin,权重系数a的取值范围为0.87~0.93;B21. Obtaining the lower boundary contour DB: from left to right, sequentially scan each column of the main carotid artery region of interest in the two-dimensional sagittal plane image, and obtain the maximum gray value, minimum gray value and threshold condition of each column The lower boundary candidate points of the lower boundary candidate points; among the lower boundary candidate points, the point with the largest index value is taken as the only lower boundary contour point; all the lower boundary contour points are connected in sequence to form the lower boundary contour DB; the gray value of the lower boundary candidate point GV candi should satisfy The gray threshold condition of GV candidate ≥ a×ΔGV+GV min = a×(GV max -GV min )+GV min , the value range of weight coefficient a is 0.87~0.93;
B22、获取上边界轮廓UB:将下边界轮廓DB在二维矢状面图像的主颈动脉血管感兴趣区域中向上平行移动20~30个像素作为上边界临时轮廓UB_t;选取大小为X×X的模板,X取8~15像素,利用模板从左到右,从上到下对上边界临时轮廓UB_t和下边界轮廓DB之间的区域进行遍历,计算模板覆盖区域的像素均值EX和方差DX;若满足均值方差阈值条件EX≤b且DX≤c,b取值范围为0.05~0.09,c取值范围为0.11~0.15,则模板覆盖区域的中心为上边界候选点;若不满足均值方差阈值条件,则对应UB_t轮廓点为上边界候选点;在每一列的上边界候选点中,标记索引值最大者作为唯一上边界轮廓点;顺次连接所有上边界轮廓点构成上边界轮廓UB;B22. Obtain the upper boundary contour UB: move the lower boundary contour DB in the region of interest of the main carotid artery in the two-dimensional sagittal image in parallel upwards by 20-30 pixels as the upper boundary temporary contour UB_t; select the size as X×X The template, X takes 8~15 pixels, use the template to traverse the area between the upper boundary temporary contour UB_t and the lower boundary contour DB from left to right and from top to bottom, and calculate the pixel mean value EX and variance DX of the template coverage area ; If the mean variance threshold condition EX≤b and DX≤c is satisfied, the value range of b is 0.05~0.09, and the value range of c is 0.11~0.15, then the center of the template coverage area is the upper boundary candidate point; if the mean variance is not satisfied Threshold condition, the corresponding UB_t contour point is the upper boundary candidate point; among the upper boundary candidate points in each column, the one with the largest index value is used as the only upper boundary contour point; sequentially connect all the upper boundary contour points to form the upper boundary contour UB;
B3、感兴趣区域的细分割:在下边界轮廓DB和上边界轮廓UB之间的区域细分割出血管腔、内膜和中膜、外膜和外膜以外组织;B3. Subdivision of the region of interest: Subdividing the area between the lower boundary contour DB and the upper boundary contour UB to segment the vessel lumen, intima and media, adventitia and tissues other than the adventitia;
B4、提取血管腔与内膜的交界面即为内轮廓,提取中膜与外膜的交界面为外轮廓。B4. Extracting the interface between the lumen and the intima as the inner contour, and extracting the interface between the media and the adventitia as the outer contour.
所述感兴趣区域的细分割步骤B3中采用C均值、模糊C均值、支撑向量机SVM、AdaBoost算法中的任意一种。Any one of C-means, fuzzy C-means, support vector machine SVM, and AdaBoost algorithm is used in the fine segmentation step B3 of the region of interest.
进一步地,在所述二维冠状面序列图像的每一张图像中的主颈动脉血管感兴趣区域中,按照如下方式分割得到各主颈动脉血管的内、外轮廓:Further, in the region of interest of the main carotid artery in each image of the two-dimensional coronal sequence images, the inner and outer contours of each main carotid blood vessel are obtained by segmentation as follows:
C1、采用数学形态学方法在二维冠状面图像预处理后的主颈动脉血管感兴趣区域中初始化内轮廓,依据初始化内轮廓演化生成最终的内轮廓;C1. Using the mathematical morphology method to initialize the inner contour in the region of interest of the main carotid artery after the preprocessing of the two-dimensional coronal image, and generate the final inner contour according to the evolution of the initialized inner contour;
C2、通过初始内轮廓下移得到初始外轮廓,依据初始外轮廓演化生成最终的外轮廓;C2. The initial outer contour is obtained by moving down the initial inner contour, and the final outer contour is generated according to the evolution of the initial outer contour;
所述步骤C1和C2采用的演化方法为经典蛇形算法、GVF-Snake算法、水平集、MS模型、CV模型演化方法中的任意一种。The evolution method used in the steps C1 and C2 is any one of the classic snake algorithm, GVF-Snake algorithm, level set, MS model, and CV model evolution method.
本发明的有益效果:Beneficial effects of the present invention:
与传统的血管提取和厚度测量方法相比,本发明提供的基于颈部超声图像的主颈动脉CCA血管提取和厚度测量方法,有四点区别:Compared with traditional blood vessel extraction and thickness measurement methods, the aorotid CCA blood vessel extraction and thickness measurement method based on neck ultrasound images provided by the present invention has four differences:
(1)不同于传统方法在某一个面上进行血管提取和厚度测量,本发明将颈部超声三维体数据,按三视图方向投影切分,分别得到二维横断面、矢状面和冠状面的序列图像,并在各投影面上分别进行处理;不同于传统方法在某一个面的单帧图像上进行血管提取和厚度测量,本发明有针对性地对三个面的序列图像分别进行处理,经血管分割、提取、测量和计算后,可充分利用原有的完整三维数据信息,获得全方位的血管参数,如:血管厚度、面积、体积和斑块大小、数量等;(1) Different from the traditional method of blood vessel extraction and thickness measurement on a certain plane, the present invention divides the neck ultrasound three-dimensional volume data according to the three-view direction projection, and obtains two-dimensional cross-section, sagittal plane and coronal plane respectively sequence images, and process them separately on each projection surface; unlike the traditional method of blood vessel extraction and thickness measurement on a single frame image of a certain surface, the present invention processes the sequence images of three surfaces in a targeted manner After blood vessel segmentation, extraction, measurement and calculation, the original complete three-dimensional data information can be fully utilized to obtain a full range of blood vessel parameters, such as: blood vessel thickness, area, volume, and plaque size, quantity, etc.;
(2)在二维横断面序列图像的每一张图像中的主颈动脉血管感兴趣区域中,分割得到各主颈动脉血管的内轮廓时,引入Hough变换圆检测,获得血管圆心位置和半径参数,从而可指导后续数学形态学中的结构基元大小改变,优化内轮廓分割结果;在二维横断面序列图像的每一张图像中的主颈动脉血管感兴趣区域中,演化得到各主颈动脉血管的外轮廓前,引入椭圆拟合策略作为先验知识,并将拟合的椭圆作为初始外轮廓,更符合血管的生理形状;在二维横断面序列图像的每一张图像中的主颈动脉血管感兴趣区域中,演化得到各主颈动脉血管的外轮廓时,引入主动轮廓模型ACM方法,以解决血管外轮廓的弱边界、难以区分的问题;(2) In the region of interest of the main carotid artery in each image of the two-dimensional cross-sectional sequence image, when the inner contour of each main carotid vessel is obtained by segmentation, Hough transform circle detection is introduced to obtain the center position and radius of the vessel circle parameters, so as to guide the size change of structural primitives in the subsequent mathematical morphology and optimize the inner contour segmentation results; in the region of interest of the aorta carotid artery in each image of the two-dimensional cross-sectional sequence images, each main carotid artery is evolved to obtain Before the outer contour of the carotid artery, the ellipse fitting strategy is introduced as prior knowledge, and the fitted ellipse is used as the initial outer contour, which is more in line with the physiological shape of the blood vessel; in each image of the two-dimensional cross-sectional sequence images In the area of interest of the main carotid artery, when the outer contour of each main carotid artery is evolved, the active contour model (ACM) method is introduced to solve the problem of weak boundaries and difficult distinctions of the outer contour of the blood vessels;
(3)在二维矢状面序列图像的每一张图像中的主颈动脉血管感兴趣区域中,分割得到各主颈动脉血管的内、外轮廓时,采用“粗-细”两层分割结构;在“粗分割”时,利用灰度阈值条件和均值方差阈值条件加以约束;在“细分割”时,首先引入模糊C均值FCM聚类算法;其次,将血管组织划分为多类;最后再分别合并为三类——“血管腔”、“内中膜”和“外膜及外组织”,获得各交界面轮廓,以提高矢状面内中膜厚度测量的准确度;(3) In the region of interest of the main carotid artery in each image of the two-dimensional sagittal plane sequence image, when the inner and outer contours of each main carotid artery are obtained by segmentation, the "coarse-thin" two-layer segmentation is used structure; in the "coarse segmentation", the gray threshold condition and the mean variance threshold condition are used to constrain; in the "fine segmentation", the fuzzy C-means FCM clustering algorithm is first introduced; secondly, the vascular tissue is divided into multiple categories; finally Then merge them into three categories - "vascular lumen", "intima-media" and "adventitia and outer tissue" to obtain the outline of each interface to improve the accuracy of sagittal plane intima-media thickness measurement;
(4)在二维冠状面序列图像的每一张图像中的主颈动脉血管感兴趣区域中,分割得到各主颈动脉血管的内、外轮廓时,利用数学形态学方法获得其初始内、外轮廓;再通过演化得到最终内、外轮廓;在二维冠状面图像的内中膜分割中,在Snake算法的基础上,再次引入GVF-Snake算法,解决深度凹陷问题,以提高冠状面内中膜厚度测量的精确度。(4) In the region of interest of the main carotid artery in each image of the two-dimensional coronal sequence image, when the inner and outer contours of the main carotid blood vessels are obtained by segmentation, the initial inner and outer contours of the main carotid blood vessels are obtained by using the mathematical morphology method. Outer contour; then the final inner and outer contours are obtained through evolution; in the intima-media segmentation of the two-dimensional coronal image, on the basis of the Snake algorithm, the GVF-Snake algorithm is introduced again to solve the problem of deep depression, so as to improve the intima-media segmentation of the coronal image. Accuracy of media thickness measurements.
综上,本发明提供的基于颈部超声图像的主颈动脉CCA血管提取和厚度测量方法,首先能有效地应对超声图像的多样性,达到准确、快速分割血管和测量厚度的目的;其次,经定量分析与比较,本方法与手动分割、测量方法误差相当,其应用可直接减轻医务工作者海量的图像手动标记工作量;最后,基于本发明方法分析所得的临床参数(如:血管厚度、面积、体积和斑块大小、数量等),不仅可以直观定量地反映血管病变,而且能为颈动脉粥样硬化的早期防治提供更多的指导意义。To sum up, the method for extracting and measuring the thickness of the aorta carotid artery CCA based on ultrasound images of the neck provided by the present invention can effectively deal with the diversity of ultrasound images, and achieve the purpose of accurately and quickly segmenting blood vessels and measuring thickness; secondly, through Quantitative analysis and comparison, this method is equivalent to the error of manual segmentation and measurement methods, and its application can directly reduce the workload of manual labeling of a large number of images of medical workers; finally, based on the method of the present invention, the clinical parameters (such as: blood vessel thickness, area , volume and plaque size, number, etc.), not only can intuitively and quantitatively reflect vascular lesions, but also provide more guiding significance for the early prevention and treatment of carotid atherosclerosis.
附图说明 Description of drawings
图1为本发明中的具体步骤流程图;Fig. 1 is a flow chart of concrete steps among the present invention;
图2为本发明中二维序列图像处理的流程图;Fig. 2 is the flowchart of two-dimensional sequential image processing among the present invention;
图3为本发明具体步骤的流程图;Fig. 3 is the flowchart of concrete steps of the present invention;
图4为标记三维体数据3D_Data分叉点和中轴方向示意图;Fig. 4 is a schematic diagram of the bifurcation point and the central axis direction of the marked three-dimensional volume data 3D_Data;
图5为主颈动脉根据中轴三视图投影切分示意图;Figure 5 is a schematic diagram of division of the main carotid artery according to the three-view projection of the central axis;
图6为二维横断面序列图像(2D_Data_Z);Figure 6 is a two-dimensional cross-sectional sequence image (2D_Data_Z);
图7为二维横断面序列图像中的第13张原始图像(2D_Data_Z_k,k=13);Figure 7 is the 13th original image (2D_Data_Z_k, k=13) in the two-dimensional cross-sectional sequence image;
图8为二维矢状面序列图像(2D_Data_Y);Figure 8 is a two-dimensional sagittal sequence image (2D_Data_Y);
图9为二维矢状面序列图像中的第2张原始图像(2D_Data_Y,j=2);Figure 9 is the second original image (2D_Data_Y, j=2) in the two-dimensional sagittal sequence image;
图10为二维冠状面序列图像(2D_Data_X);Figure 10 is a two-dimensional coronal sequence image (2D_Data_X);
图11为二维冠状面序列图像(2D_Data_X)中的第1张原始图像(2D_Data_X_i,i=1);Figure 11 is the first original image (2D_Data_X_i, i=1) in the two-dimensional coronal sequence image (2D_Data_X);
图12为二维横断面序列图像分割流程图;Fig. 12 is a flowchart of image segmentation of two-dimensional cross-sectional sequence;
图13为该二维横断面图像的感兴趣区域ROI图;Fig. 13 is the ROI diagram of the region of interest of the two-dimensional cross-sectional image;
图14为该感兴趣区域ROI预处理逐步结果图:图14-(a)为分段线性拉伸结果图;图14-(b)为SRAD非线性滤波结果图;Figure 14 is the step-by-step result diagram of ROI preprocessing in the region of interest: Figure 14-(a) is the segmented linear stretching result diagram; Figure 14-(b) is the SRAD nonlinear filtering result diagram;
图15为对预处理感兴趣区域Hough变换圆检测的结果图;Fig. 15 is the result figure of Hough transform circle detection to the preprocessing region of interest;
图16为对预处理感兴趣区域Canny算子边缘检测的结果图;Fig. 16 is the result figure of Canny operator edge detection to preprocessing area of interest;
图17为数学形态学处理结果图;Fig. 17 is a graph of mathematical morphology processing results;
图18为提取的单像素点内轮廓结果图;Fig. 18 is the extracted single-pixel inner contour result map;
图19为内轮廓展开点集图;Fig. 19 is an inner contour expanded point set diagram;
图20为内轮廓展开点集的拟合曲线图;Fig. 20 is a fitting curve diagram of inner contour expansion point set;
图21为内轮廓复原点集图;Fig. 21 is a point set diagram of inner contour recovery;
图22为该二维横断面内轮廓分割结果图:其中实心圆形点表示手动分割轮廓;实线表示本发明分割轮廓;Fig. 22 is a diagram of the segmentation result of the inner contour of the two-dimensional cross-section: wherein the solid circle point represents the manual segmentation contour; the solid line represents the segmentation contour of the present invention;
图23为内轮廓椭圆拟合结果图;Fig. 23 is a figure of inner contour ellipse fitting result;
图24为该二维横断面外轮廓分割结果图:其中实心菱形点表示手动分割轮廓;实心方形点表示本发明分割轮廓;Fig. 24 is a diagram of the segmentation result of the outer contour of the two-dimensional cross-section: wherein the solid diamond point represents the manual segmentation contour; the solid square point represents the segmentation contour of the present invention;
图25为二维矢状面预处理结果图:图25-(a)为归一化结果图;图25-(b)为滤波结果图;Figure 25 is the result of two-dimensional sagittal plane preprocessing: Figure 25-(a) is the result of normalization; Figure 25-(b) is the result of filtering;
图26为二维矢状面感兴趣区ROI预处理结果图;Figure 26 is a two-dimensional sagittal region of interest ROI preprocessing results;
图27为二维矢状面感兴趣区ROI粗分割结果图:图27-(a)为原始大小;图27-(b)为放大一倍显示图;图27-(c)为放大两倍显示图;Figure 27 is the result of rough segmentation of ROI in the two-dimensional sagittal region of interest: Figure 27-(a) is the original size; Figure 27-(b) is a double-magnified display; Figure 27-(c) is double-magnified display graph;
图28为二维矢状面感兴趣区ROI细分割结果图:图28-(a)为原始大小;图28-(b)为放大一倍显示图;图28-(c)为放大两倍显示图;Figure 28 is the result of fine segmentation of ROI in the two-dimensional sagittal region of interest: Figure 28-(a) is the original size; Figure 28-(b) is the double-magnified display image; Figure 28-(c) is the double-magnified display display graph;
图29为该二维冠状面提取感兴趣区域ROI结果图:图29-(a)为原始图;图29-(b)为对应ROI图;Figure 29 is the ROI result map of the two-dimensional coronal surface extraction region of interest: Figure 29-(a) is the original image; Figure 29-(b) is the corresponding ROI map;
图30为该二维冠状面感兴趣区域ROI预处理结果图;Fig. 30 is the ROI preprocessing result figure of the region of interest of the two-dimensional coronal plane;
图31为该感兴趣区域阈值化结果图;Fig. 31 is a graph of the thresholding result of the region of interest;
图32为该感兴趣区域填补空洞结果图;FIG. 32 is a result diagram of filling holes in the region of interest;
图33为该感兴趣区域内膜表面去毛刺结果图;Fig. 33 is the deburring result diagram of the intima surface of the region of interest;
图34为该感兴趣区域内膜修正结果图;Figure 34 is a diagram of the result of intima correction in the region of interest;
图35为内膜的初始轮廓(虚线)和最终轮廓(实线)结果图:图35-(a)为原始大小;图35-(b)为放大一倍显示图;图35-(c)为放大两倍显示图;Figure 35 is the results of the initial contour (dotted line) and final contour (solid line) of the intima: Figure 35-(a) is the original size; Figure 35-(b) is the double-magnified display; Figure 35-(c) Show graph for double magnification;
图36为外膜的初始轮廓(虚线)和最终轮廓(实线)结果图:图36-(a)为原始大小;图36-(b)为放大一倍显示图;图36-(c)为放大两倍显示图;Figure 36 is the results of the initial contour (dotted line) and final contour (solid line) of the adventitia: Figure 36-(a) is the original size; Figure 36-(b) is the double-magnified display; Figure 36-(c) Show graph for double magnification;
图37为内膜(上)和外膜(下)的初始轮廓(虚线)和最终轮廓(实线)结果图:图37-(a)为原始大小;图37-(b)为放大一倍显示图;图37-(c)为放大两倍显示图;Figure 37 is the initial contour (dotted line) and final contour (solid line) results of the intima (upper) and adventitia (lower): Figure 37-(a) is the original size; Figure 37-(b) is doubled Display diagram; Figure 37-(c) is a double-magnified display diagram;
图38为该二维冠状面手动测量内中膜厚度金标准结果图。Fig. 38 is a diagram of the gold standard results of manual measurement of intima-media thickness on the two-dimensional coronal plane.
具体实施方式 Detailed ways
下面结合具体的实施示例及附图说明,对本发明做进一步的详细描述,并给出了本发明的方案验证。In the following, the present invention will be further described in detail in conjunction with specific implementation examples and descriptions of the drawings, and the solution verification of the present invention will be given.
一种基于颈部超声图像的主颈动脉CCA血管提取和厚度测量方法,包括以下五个步骤和方案验证,如图1所示;具体的,对每个二维序列图像处理的流程图,如图2所示;总流程图,如3所示。A method for extracting and measuring the thickness of the main carotid artery CCA vessel based on ultrasound images of the neck, including the following five steps and scheme verification, as shown in Figure 1; specifically, the flow chart for each two-dimensional sequence image processing, as shown in FIG. As shown in Figure 2; the overall flow chart is shown in Figure 3.
步骤(1)读取颈部超声三维体数据3D_Data,标记主颈动脉分叉点“BF”和中心轴,如图4所示。Step (1) Read the neck ultrasound three-dimensional volume data 3D_Data, mark the main carotid bifurcation point "BF" and the central axis, as shown in Figure 4.
(1.1)定位分叉点“BF”(1.1) Locate the bifurcation point "BF"
在三维超声体数据3D_Data中,识别主颈动脉CCA、内颈动脉ICA与外颈动脉ECA,并确定颈动脉分叉点“BF”的位置(参见图4)。In the three-dimensional ultrasound volume data 3D_Data, identify the main carotid artery CCA, internal carotid artery ICA and external carotid artery ECA, and determine the position of the carotid artery bifurcation point "BF" (see Figure 4).
(1.2)定位主颈动脉CCA的中心轴(1.2) Locate the central axis of the aortocarotid CCA
参考分叉点“BF”的位置,根据主颈动脉CCA生理解剖结构,初步估计中心轴位置,在估计的中心轴上任意选择两点——“点1”和“点2”(参见图4),“点1”和“点2”的连线作为主颈动脉CCA的中心轴。Referring to the position of the bifurcation point "BF", according to the physiological and anatomical structure of the aortacarotid artery CCA, the position of the central axis is preliminarily estimated, and two points are arbitrarily selected on the estimated central axis - "point 1" and "point 2" (see Figure 4 ), the line connecting "point 1" and "point 2" is used as the central axis of the aorta carotid artery CCA.
步骤(2)依据中心轴,按三视图方向投影,如图5所示,切分颈部超声三维体数据3D_Data,分别得到二维横断面序列图像(2D_Data_Z)、二维矢状面序列图像(2D_Data_Y)和二维冠状面序列图像(2D_Data_X);Step (2) According to the central axis, project according to the three-view direction, as shown in Figure 5, segment the cervical ultrasound three-dimensional volume data 3D_Data, and obtain the two-dimensional cross-sectional sequence image (2D_Data_Z) and the two-dimensional sagittal plane sequence image ( 2D_Data_Y) and two-dimensional coronal sequence images (2D_Data_X);
(2.1)二维横断面序列图像(2D_Data_Z)(2.1) Two-dimensional cross-sectional sequence image (2D_Data_Z)
按垂直于颈动脉中心轴方向进行切分,得到二维横断面序列图像。一般的,二维横断面序列图像至多有13~15张,如图6所示;本发明中,取第13张作为示例说明,如图7所示。Segmentation was performed perpendicular to the central axis of the carotid artery to obtain two-dimensional cross-sectional images. Generally, there are at most 13-15 two-dimensional cross-sectional images, as shown in FIG. 6 ; in the present invention, the 13th image is taken as an example, as shown in FIG. 7 .
(2.2)二维矢状面序列图像(2D_Data_Y)(2.2) Two-dimensional sagittal sequence image (2D_Data_Y)
按平行于颈动脉中心轴方向、从侧面投影进行切分,得到二维矢状面序列图像。一般的,二维矢状面序列图像至多有4~6张,如图8所示;本发明中,取第2张作为示例说明,如图9所示。According to the direction parallel to the central axis of the carotid artery and segmented from the side projection, two-dimensional sagittal plane sequence images were obtained. Generally, there are at most 4 to 6 images in the two-dimensional sagittal plane sequence, as shown in FIG. 8 ; in the present invention, the second image is taken as an example, as shown in FIG. 9 .
(2.3)二维冠状面序列图像(2D_Data_X)(2.3) Two-dimensional coronal sequence image (2D_Data_X)
按平行于颈动脉中心轴方向、从正面投影进行切分,得到二维冠状面序列图像。一般的,二维冠状面的序列图像至多有3张,如图10所示;本发明中,取第1张作为示例说明,如图11所示。According to the direction parallel to the central axis of the carotid artery, it is segmented from the frontal projection to obtain two-dimensional coronal sequence images. Generally, there are at most three sequential images of the two-dimensional coronal plane, as shown in FIG. 10 ; in the present invention, the first one is taken as an example, as shown in FIG. 11 .
步骤(3)依据二维横断面序列图像,提取三维主颈动脉血管轮廓。本步骤分割各二维横断面序列图像的内、外血管轮廓,具体分割步骤流程图,如图12所示。Step (3) extracting the three-dimensional aortic carotid vessel outline based on the two-dimensional cross-sectional sequence images. In this step, the inner and outer blood vessel contours of each two-dimensional cross-sectional sequence image are segmented, and the flow chart of the specific segmentation steps is shown in FIG. 12 .
在本步骤中,选择二维横断面序列图像(2D_Data_Z)中的一张为例说明本步骤(参见图7),其它图像均采用同样的方法加以处理,最终获得所有二维横断面序列图像的血管内、外轮廓,从而进行面积、体积等参数计算,提供临床诊疗指标依据,定性地衡量临床病情。鉴于超声序列图像质量整体较差,需经由预处理加以改善;血管提取的关键就是内、外轮廓的分割,本发明中结合血管形态,引入圆、椭圆作为形状先验信息,更加有效的分割血管;为了更好的呈现分割结果,最后再有针对性对内轮廓进行后处理。In this step, select one of the two-dimensional cross-sectional images (2D_Data_Z) as an example to illustrate this step (see Figure 7). The internal and external contours of blood vessels are used to calculate parameters such as area and volume, provide clinical diagnosis and treatment indicators, and qualitatively measure clinical conditions. In view of the overall poor quality of ultrasound sequence images, it needs to be improved through preprocessing; the key to blood vessel extraction is the segmentation of inner and outer contours. In the present invention, combined with the shape of blood vessels, circles and ellipses are introduced as shape prior information to more effectively segment blood vessels. ; In order to better present the segmentation results, finally perform targeted post-processing on the inner contour.
(3.1)在二维横断面序列图像(2D_Data_Z)中,分别选取各主颈动脉血管感兴趣区域(2D_Data_Z_k_ROI),并对各主颈动脉血管感兴趣区域预处理。预处理的技术思路为:先灰度变化,再滤波降噪。(3.1) In the two-dimensional cross-sectional sequence images (2D_Data_Z), select the region of interest (2D_Data_Z_k_ROI) of each aortocarotid artery respectively, and preprocess the region of interest of each aortocarotid artery. The technical idea of preprocessing is: change the gray level first, and then filter and reduce noise.
原始的二维横断面图像灰度偏暗、对比度低、噪声较大,因此需要对其做预处理。本发明是为了提取血管,因此只需将二维横断面图像中包含血管的子区域作为感兴趣区域ROI进行预处理,图7的感兴趣区域ROI如图13所示,每个预处理步骤结果如图14所示,预处理过程具体如下:The original two-dimensional cross-sectional image has dark gray scale, low contrast, and high noise, so it needs to be preprocessed. The present invention is to extract blood vessels, so it is only necessary to preprocess the sub-region containing blood vessels in the two-dimensional cross-sectional image as the region of interest ROI. The ROI of the region of interest in Figure 7 is shown in Figure 13, and the results of each preprocessing step As shown in Figure 14, the preprocessing process is as follows:
(3.1.1)灰度变换(图14-a)(3.1.1) Gray scale transformation (Figure 14-a)
灰度变换是为了提高图像处理时灰度级的动态范围,以提高图像的亮度和对比度,可采用线性拉伸、非线性拉伸、图像增强等方法。本实例选用最简单的分段线性变换函数进行说明,该方法由两个基本操作组成:Grayscale transformation is to improve the dynamic range of grayscale during image processing, so as to improve the brightness and contrast of the image. Methods such as linear stretching, nonlinear stretching, and image enhancement can be used. This example uses the simplest piecewise linear transformation function for illustration, which consists of two basic operations:
(3.1.1.1)确定对图像进行灰度拉伸的两个拐点;(3.1.1.1) Determine the two inflection points for grayscale stretching of the image;
对二维横断面图像作直方图统计,得到L灰度级的图像。把灰度变换处理前后的灰度值分别用r和s分别定义,L灰度级的图像的灰度变换函数表示为s=T(r)。假设P1,P2是分段线性变换函数T(r)的两个拐点,其变换前后的灰度值分别为(r1,s1)和(r2,s2)。The histogram statistics are made on the two-dimensional cross-sectional image to obtain an L grayscale image. The gray value before and after the gray scale transformation process is defined by r and s respectively, and the gray scale transformation function of the L gray level image is expressed as s=T(r). Assume that P1 and P2 are two inflection points of the piecewise linear transformation function T(r), and the gray values before and after transformation are (r 1 , s 1 ) and (r 2 , s 2 ) respectively.
(3.1.1.2)灰度变换(3.1.1.2) Gray scale transformation
本实例统计了10名匿名病人三维体数据,共获得二维横断面图像300张,经统计分析后,设置所关注的原图的灰度级范围为[rmin,rmax],则P1,P2两个拐点把变换函数T(r)分成3段:rmin≤r<r1,r1≤r≤r2,r2<r≤rmax。T(r)的表达式如下所示:In this example, the three-dimensional volume data of 10 anonymous patients were counted, and a total of 300 two-dimensional cross-sectional images were obtained. After statistical analysis, the gray scale range of the original image concerned is set to [r min , r max ], then P1, The two inflection points of P2 divide the transformation function T(r) into three sections: r min ≤r<r 1 , r 1 ≤r≤r 2 , r 2 <r≤r max . The expression for T(r) is as follows:
如此一来,就把灰度级由原来所关注的范围线性拉伸至饱和范围[0,L-1],L为变换后的灰度级。图13的灰度变换结果如图14-a所示。In this way, the gray level is linearly stretched from the original concerned range to the saturation range [0, L-1], where L is the transformed gray level. The grayscale transformation result of Figure 13 is shown in Figure 14-a.
(3.1.2)滤波降噪(图14-b)(3.1.2) Filtering and noise reduction (Figure 14-b)
滤波降噪可选用非局部均值、高斯滤波、斑点噪声各向异性扩散模型SRAD等方法。其中,SRAD非线性滤波器由于在不同的扩散方向上采用不同的扩散系数,故具有增强对比度、保留细节等优点。SRAD滤波器是基于局部统计滤波器以及各向异性平滑提出的,相比于其他传统的基于局部统计滤波器以及各向异性平滑滤波器,具有更好的同质区域平滑性能以及更好地保留细节和边界增强的优点。图14-a的滤波降噪结果如图14-b所示。Non-local mean value, Gaussian filter, speckle noise anisotropic diffusion model SRAD and other methods can be used for filtering noise reduction. Among them, the SRAD nonlinear filter has the advantages of enhancing contrast and preserving details due to the use of different diffusion coefficients in different diffusion directions. The SRAD filter is proposed based on local statistical filters and anisotropic smoothing. Compared with other traditional local statistical filters and anisotropic smoothing filters, it has better homogeneous area smoothing performance and better retention Advantages of detail and border enhancement. The filtering and denoising results of Figure 14-a are shown in Figure 14-b.
(3.2)在预处理后的各主颈动脉血管感兴趣区域中,分割得到各主颈动脉血管的内、外轮廓。(3.2) In the region of interest of each main carotid artery after preprocessing, segment the inner and outer contours of each main carotid artery.
主颈动脉血管的内、外轮廓提取的技术思路为:首先提取内轮廓;其次,拟合得到初始外轮廓;最后,演化得到主颈动脉血管的最终外轮廓。The technical idea of extracting the inner and outer contours of the main carotid artery is as follows: first, the inner contour is extracted; second, the initial outer contour is obtained by fitting; finally, the final outer contour of the main carotid artery is obtained by evolution.
(3.2.1)在预处理后的各主颈动脉血管感兴趣区域中,提取各主颈动脉血管的内轮廓,并平滑处理。(3.2.1) In the region of interest of each main carotid artery after preprocessing, the inner contour of each main carotid vessel was extracted and smoothed.
提取主颈动脉血管的内轮廓的技术思路为:首先提取血管参数信息,其次,依据血管参数信息,提取血管单像素点内轮廓;最后,对内轮廓作平滑处理。The technical idea of extracting the inner contour of the aorta carotid artery is as follows: firstly extract the blood vessel parameter information, secondly, extract the single pixel inner contour of the blood vessel according to the blood vessel parameter information; finally, smooth the inner contour.
(3.2.1.1)在预处理后的各主颈动脉血管感兴趣区域中,提取血管参数信息。(3.2.1.1) Extract blood vessel parameter information from each preprocessed region of interest in the aorta carotid artery.
本步骤是为了提取血管的参数信息即圆心位置和半径,本实例采用霍夫Hough变换圆检测方法示例说明(不局限该方法)。Hough变换圆检测中可获得O(centre,Rmax,Rmin),分别为圆心坐标,最大半径、最小半径,从而为后续步骤的基元尺寸大小提供参考依据。Hough变换的实质是将图像空间内具有一定关系的象元进行聚类,建立能把这些象元用某一解析形式联系起来的参数空间,寻找累计对应点。在Hough变换检测圆中,由Canny算子得到的边界点即为象元,圆心坐标和圆半径这三个参数即为其相应解析形式的参数。另在本例中,为了减少程序运行时间,人为地选定一定的圆半径范围和圆心位置。图15给出了对图14-b进行变换圆检测的结果。This step is to extract the parameter information of the blood vessel, that is, the position and radius of the center of the circle. In this example, the Hough transform circle detection method is used to illustrate (the method is not limited). O(centre, R max , R min ) can be obtained in Hough transform circle detection, which are the coordinates of the center of the circle, the maximum radius, and the minimum radius, so as to provide a reference for the size of the primitive in the subsequent steps. The essence of Hough transform is to cluster the pixels with a certain relationship in the image space, establish a parameter space that can connect these pixels with a certain analytical form, and find the cumulative corresponding points. In the Hough transform detection circle, the boundary point obtained by the Canny operator is the pixel, and the three parameters of the circle center coordinates and the circle radius are the parameters of its corresponding analytical form. In addition, in this example, in order to reduce the running time of the program, a certain circle radius range and the center position of the circle are artificially selected. Figure 15 shows the results of transformed circle detection on Figure 14-b.
(3.2.1.2)依据血管参数信息,提取血管单像素点内轮廓(3.2.1.2) According to the blood vessel parameter information, extract the inner contour of the single pixel point of the blood vessel
基于数学形态学方法、主动轮廓模型、水平集方法或Fast Marching,均可分割得到二维横断面图像中预处理后感兴趣区域的主颈动脉血管内轮廓。本实例采用数学形态学方法示例说明。Based on the mathematical morphology method, active contour model, level set method or Fast Marching, the inner contour of the aorta carotid artery in the region of interest after preprocessing in the two-dimensional cross-sectional image can be segmented. This example uses the mathematical morphology method to illustrate.
(3.2.1.2.1)提取感兴趣区域内的边缘,本实例采用Canny算子边缘,图13-b的边缘提取结果,如图16所示;(3.2.1.2.1) Extract the edge in the region of interest. In this example, the Canny operator edge is used. The edge extraction result in Figure 13-b is shown in Figure 16;
(3.2.1.2.2)设置结构基元大小及形状(3.2.1.2.2) Set the size and shape of structural primitives
其中结构基元大小SE_si中,RmaxRm分别为(3.2.1.1)中计算所得圆的最大半径、最小半径(参见图15);且结构基元大小SE_size、形状SE shape可调。如:常用的大小为3、5、7等;常用的形状为圆形、十字形、方形等。本发明中,结构基元形状SE_shape采用八角圆盘,大小为3的整数倍数。in In the size of the structural element SE_si, R max R m is the maximum radius and minimum radius of the circle calculated in (3.2.1.1) respectively (see Figure 15); and the size of the structural element SE_size and the shape SE shape are adjustable. For example: commonly used sizes are 3, 5, 7, etc.; commonly used shapes are circle, cross, square, etc. In the present invention, the shape SE_shape of the structural primitive adopts an octagonal disk, and its size is an integer multiple of 3.
(3.2.1.2.3)数学形态学闭运算操作(3.2.1.2.3) Close operation of mathematical morphology
将结构基元作用于图16上进行数学形态学闭运算操作,获得封闭的内轮廓所在局域。图16经闭运算操作后的结果如图17所示。Apply the structural primitives to Figure 16 to perform mathematical morphology closing operations to obtain the local area where the closed inner contour is located. Figure 17 shows the results after the closing operation in Figure 16 .
(3.2.1.2.4)提取单像素点血管内轮廓(3.2.1.2.4) Extract single-pixel intravascular contour
血管轮廓可用其一系列的轮廓点加以描述。因此,形态学分割血管内轮廓后,对其所在局域提取单像素点集,即可作为该二维横断面血管的内轮廓。图17的单像素轮廓点如图18所示。The outline of a blood vessel can be described by a series of outline points. Therefore, after morphologically segmenting the inner contour of a blood vessel, a single pixel point set is extracted for the local area, which can be used as the inner contour of the two-dimensional cross-sectional blood vessel. The single-pixel contour points in Fig. 17 are shown in Fig. 18 .
(3.2.1.3)血管内轮廓的平滑处理(图19、图20和图21)(3.2.1.3) Smoothing of intravascular contours (Fig. 19, Fig. 20 and Fig. 21)
血管轮廓的平滑处理包括对内、外轮廓的平滑处理。本发明中,采用“面包卷式”展开,经光顺、多项式拟合的后,再复原获得新的单像素轮廓点集,具体过程如下:The smoothing of the blood vessel contour includes the smoothing of the inner and outer contours. In the present invention, the "bread roll" expansion is adopted, and after smoothing and polynomial fitting, a new single-pixel contour point set is obtained by restoration. The specific process is as follows:
(3.2.1.3.1)计算轮廓中心点坐标(3.2.1.3.1) Calculate the coordinates of the center point of the contour
计算轮廓点集中所有点横、纵坐标的平均值,并记此点为中心点(x0,y0);Calculate the average value of the horizontal and vertical coordinates of all points in the contour point set, and record this point as the center point (x 0 ,y 0 );
(3.2.1.3.2)排序轮廓点(3.2.1.3.2) Sorting contour points
任选一轮廓点,并以该点为起始点,按轮廓逆时针方向依次排序;Choose a contour point, and use this point as the starting point, sort the contour counterclockwise;
(3.2.1.3.3)计算相对距离(3.2.1.3.3) Calculate the relative distance
依次计算中心点(x0,y0)与排序轮廓点(xi,yi)的相对距离Dis;Sequentially calculate the relative distance Dis between the center point (x 0 , y 0 ) and the sorted contour point ( xi , y i );
(3.2.1.3.4)展开内轮廓点集(图19)(3.2.1.3.4) Expand the inner contour point set (Figure 19)
以排序序号为横坐标,各对应相对距离为纵坐标,获得原轮廓展开点集;Take the sorting number as the abscissa and each corresponding relative distance as the ordinate to obtain the original contour expansion point set;
(3.2.1.3.5)多项式拟合(图20)(3.2.1.3.5) Polynomial fitting (Figure 20)
对上述点集进行曲线多项式拟合,去除毛刺,使得轮廓展开拟合曲线平滑。其中,多项式阶数n0可调,一般取5~10,优选地,n0=9;Curve polynomial fitting is performed on the above point set to remove burrs and make the contour expansion fitting curve smooth. Wherein, the polynomial order n 0 is adjustable, generally 5~10, preferably, n 0 =9;
(3.2.1.3.6)复原轮廓点集(图21)(3.2.1.3.6) Restoring the contour point set (Figure 21)
将平滑后的曲线作为新轮廓展开曲线,并根据序号,反求新轮廓点(xj,yj)坐标,即轮廓点集复原。The smoothed curve is used as a new contour to expand the curve, and according to the sequence number, the coordinates of the new contour point (x j , y j ) are inversely calculated, that is, the contour point set is restored.
其中:angle为原轮廓中心点(x0,y0)与原轮廓点(xi,yi)连线的倾角。最终,内轮廓结果如图22所示,其中实心圆形点表示手动分割轮廓;实线表示本发明分割轮廓。Where: angle is the inclination angle of the line connecting the original contour center point (x 0 , y 0 ) and the original contour point ( xi , y i ). Finally, the result of the inner contour is shown in Figure 22, where the solid circle points represent the manually segmented contour; the solid line represents the segmented contour of the present invention.
(3.2.2)依据各主颈动脉血管的内轮廓,对其进行椭圆拟合,将各拟合得到的椭圆放大后,作为各主颈动脉血管的初始外轮廓;(3.2.2) According to the inner contour of each main carotid vessel, ellipse fitting is performed on it, and each fitted ellipse is enlarged, and used as the initial outer contour of each main carotid vessel;
(3.2.2.1)依据血管内轮廓,对其进行椭圆拟合;(3.2.2.1) Carry out ellipse fitting according to the inner contour of the blood vessel;
本发明以步骤(3.2.1.2.4)确定的内轮廓单像素点集为给定点集,椭圆为拟合函数,拟合获取椭圆的参数E(centre,p,q,θ):分别表示椭圆圆心坐标、椭圆长半轴长、椭圆短半轴长、椭圆长轴与水平线夹角。In the present invention, the inner contour single-pixel point set determined in step (3.2.1.2.4) is used as a given point set, and the ellipse is a fitting function, and the parameters E (centre, p, q, θ) of the ellipse are obtained by fitting: respectively represent the ellipse The coordinates of the center of the circle, the length of the semi-major axis of the ellipse, the length of the semi-minor axis of the ellipse, and the angle between the major axis of the ellipse and the horizontal line.
本发明中,对内轮廓椭圆拟合的结果如图23所示。In the present invention, the result of fitting the inner contour ellipse is shown in FIG. 23 .
(3.2.2.2)血管的初始外轮廓(3.2.2.2) The initial outer contour of the vessel
基于血管形状的先验知识,利用血管内外轮廓的一致性和对称性,对获得的血管内轮廓进行椭圆拟合后,放大作为血管外轮廓的初始轮廓。Based on the prior knowledge of the shape of the blood vessel, using the consistency and symmetry of the inner and outer contours of the blood vessel, the obtained inner contour of the blood vessel is fitted with an ellipse, and then enlarged as the initial contour of the outer contour of the blood vessel.
放大(3.2.2.1)拟合的椭圆,作为血管初始外轮廓。优选地,椭圆放大比例系数factor在1.02~1.08之间。本发明放大的含义为椭圆的长半轴、短半轴乘以放大比例系数,椭圆的圆心和倾角不变。Enlarge (3.2.2.1) the fitted ellipse as the initial outline of the vessel. Preferably, the ellipse enlargement factor factor is between 1.02 and 1.08. The meaning of enlargement in the present invention is that the semi-major axis and the semi-minor axis of the ellipse are multiplied by the enlargement scale coefficient, and the center and inclination angle of the ellipse remain unchanged.
(3.2.3)依据各主颈动脉血管的初始外轮廓,采用主动轮廓模型ACM演化,得到各主颈动脉血管的(最终)外轮廓(3.2.3) According to the initial outer contour of each main carotid vessel, the active contour model ACM evolution is used to obtain the (final) outer contour of each main carotid vessel
基于(3.2.2)血管初始外轮廓,采用主动轮廓模型(ACM)演化,获得最终血管外轮廓,如图24所示,其中实心菱形点表示手动分割轮廓;实心方形点表示本发明分割轮廓。Based on (3.2.2) the initial outer contour of the blood vessel, the active contour model (ACM) is used to evolve to obtain the final outer contour of the blood vessel, as shown in Figure 24, where the solid diamond points represent the manual segmentation contour; the solid square points represent the segmentation contour of the present invention.
由于本发明血管的外轮廓通过主动轮廓模型获取,内轮廓采用数学形态学获取,因此外轮廓相对内轮廓具有较好的平滑性,所以可按照上述(3.2.1.3)方式只对内轮廓作平滑处理。Since the outer contour of the blood vessel in the present invention is obtained by the active contour model, and the inner contour is obtained by mathematical morphology, the outer contour has better smoothness than the inner contour, so only the inner contour can be smoothed according to the above (3.2.1.3) method deal with.
(3.3)依据各感兴趣区域的内、外轮廓,按其空间位置关系三维重建,得到三维主颈动脉血管轮廓。该血管轮廓可辅助临床应用。(3.3) According to the inner and outer contours of each region of interest, three-dimensional reconstruction is carried out according to their spatial position relationship to obtain the three-dimensional aortocarotid vessel contour. The vessel contour can assist clinical application.
按步骤(3)依次对所有二维横断面序列图像处理后,获得每一张的血管内、外轮廓。将标记了主颈动脉血管的各感兴趣区域,依照空间位置关系顺序堆叠,三维重建得到三维主颈动脉血管;三维重建后,即可获得主颈动脉CCA的面积、体积等参数,从而为医生临床诊断提供指导意义,常见的如:药物评价;若引入对比研究,则可用于手术效果评价等等。After sequentially processing all the two-dimensional cross-sectional images according to step (3), the inner and outer contours of each blood vessel are obtained. The regions of interest marked with the aorta carotid artery are stacked in order according to the spatial position relationship, and the three-dimensional reconstruction is performed to obtain the three-dimensional aorta carotid artery; after the three-dimensional reconstruction, the parameters such as the area and volume of the aorta carotid artery CCA can be obtained, so as to provide doctors with Clinical diagnosis provides guidance, such as: drug evaluation; if a comparative study is introduced, it can be used for surgical effect evaluation and so on.
步骤(4)依据二维矢状面序列图像,计算矢状面的内中膜厚度。Step (4) Calculate the intima-media thickness in the sagittal plane based on the two-dimensional sagittal plane sequence images.
主颈动脉CCA血管壁,由血管腔(Lumen)开始,从内到外依次由三层膜组成——内膜(Intima)、中膜(media)以及外膜(adventitia)。超声正是利用“血管腔(L)-内膜(I)-中膜(M)-外膜(A)”所形成的不同声学阻抗界面,进行成像从而诊断病情的。The main carotid CCA vessel wall, starting from the lumen (Lumen), is composed of three layers of membranes from inside to outside—intima, media, and adventitia. Ultrasound is the use of different acoustic impedance interfaces formed by "vascular lumen (L)-intima (I)-media (M)-adventitia (A)" to perform imaging to diagnose the disease.
本发明中,提取的内膜轮廓(简称内轮廓)位于血管腔与内膜交界处,记为LIB(Lumen Intima Boundary);提取的外膜轮廓(简称外轮廓)位于中膜与外膜的交界处,记为MAB(Media Adventitia Boundary);测量的内中膜厚度(Intima-media Thickness,IMT)即为血管腔-内膜交界面LIB与中膜-外膜交界面MAB之间的距离。In the present invention, the extracted intima contour (referred to as the inner contour) is located at the junction of the vascular lumen and the intima, which is recorded as LIB (Lumen Intima Boundary); the extracted adventitia contour (abbreviated as the outer contour) is located at the junction of the media and the adventitia The measured intima-media thickness (IMT) is the distance between the lumen-intima interface LIB and the media-adventitia interface MAB.
本步骤的主要技术思路为:提取二维矢状面序列图像的内、外膜,测量内中膜厚度IMT,计算矢状面内中膜厚度IMT的均值后,提供血管定量分析测量结果。取其中一张二维矢状面图像(参见图9)作为本例说明,其它图像均采用同样的方法加以处理,最终获得厚度测量结果;The main technical idea of this step is: extract the intima and adventitia of the two-dimensional sagittal plane sequence images, measure the intima-media thickness IMT, calculate the mean value of the sagittal plane intima-media thickness IMT, and provide blood vessel quantitative analysis measurement results. Take one of the two-dimensional sagittal images (see Figure 9) as this example, and the other images are processed in the same way, and finally the thickness measurement results are obtained;
(4.1)在二维矢状面序列图像(2D_Data_Y)中,分别选取各主颈动脉血管感兴趣区域(2D_Data_Y_j_ROI),并对各主颈动脉血管感兴趣区域预处理。预处理的技术思路为:先归一化,再滤波降噪。(4.1) In the two-dimensional sagittal plane sequence image (2D_Data_Y), each aortic carotid artery region of interest (2D_Data_Y_j_ROI) was selected respectively, and each aortocarotid artery region of interest was preprocessed. The technical idea of preprocessing is: first normalize, then filter and denoise.
选取的二维矢状面序列图像包含主颈动脉CCA、分叉点BF、血管腔、远端血管壁外膜、远端血管壁外膜外组织,从中提取包含远端血管壁外膜外组织的子区域作为感兴趣区域ROI,并对其进行归一化和滤波的预处理。归一化函数可采用线性函数转换、对数函数转换、反余切函数转换等等。滤波可采用低通滤波、均值滤波、中值滤波、频域滤波、带通滤波等等。下面以线性函数归一化和低通滤波为例进行说明,分别如图25-(a)和图25-(b)所示,预处理后的ROI结果如图26所示。The selected two-dimensional sagittal sequence images include the aorta carotid artery CCA, bifurcation point BF, vessel lumen, distal vessel wall adventitia, and distal vessel wall adventitia tissue, from which extracts include the distal vessel wall adventitia tissue The sub-region of is used as the region of interest ROI, and it is preprocessed by normalization and filtering. The normalization function can adopt linear function conversion, logarithmic function conversion, inverse cotangent function conversion and so on. Filtering can use low-pass filtering, mean filtering, median filtering, frequency-domain filtering, band-pass filtering, and the like. The following is an example of linear function normalization and low-pass filtering, as shown in Figure 25-(a) and Figure 25-(b) respectively, and the ROI result after preprocessing is shown in Figure 26.
(4.1.1)线性函数归一化(图25-(a))(4.1.1) Linear function normalization (Figure 25-(a))
将二维矢状面图像灰度值进行线性函数转换,使得在[0,1]进行归一化,表达式如下:Convert the gray value of the two-dimensional sagittal plane image to a linear function, so that it can be normalized in [0, 1]. The expression is as follows:
GV_aft=(GV_pre-MinValue)/(MaxValue-MinValue)GV_aft=(GV_pre-MinValue)/(MaxValue-MinValue)
其中:GV_pre、GV_aft分别为转换前、后的灰度值,MaxValue、MinValue分别为图中的最大灰度值和最小灰度值。Among them: GV_pre, GV_aft are the gray value before and after conversion respectively, MaxValue, MinValue are the maximum gray value and the minimum gray value in the figure respectively.
(4.1.2)低通滤波(图25-(b))(4.1.2) Low-pass filtering (Figure 25-(b))
采用高斯滤波,其具体操作为:用一个均值为0,标准差为10模板,扫描图像中的每一个像素,计算模板所在邻域内所有像素的加权平均,作为模板中心像素点的灰度值。一般的,模板大小为5、7、9,本发明中,取5×5。最后,预处理后的ROI结果如图26所示。Using Gaussian filtering, the specific operation is: use a template with a mean value of 0 and a standard deviation of 10, scan each pixel in the image, and calculate the weighted average of all pixels in the neighborhood where the template is located as the gray value of the pixel in the center of the template. Generally, the template size is 5, 7, or 9, and in the present invention, 5×5 is used. Finally, the preprocessed ROI results are shown in Figure 26.
(4.2)在预处理后的各主颈动脉血管感兴趣区域中,分割得到各主颈动脉血管的内膜和外膜,并计算各感兴趣区域的内中膜厚度;(4.2) Segment the intima and adventitia of each aortic carotid vessel in the preprocessed regions of interest, and calculate the intima-media thickness of each region of interest;
依据步骤(4)所定义的内中膜厚度,在预处理后的二维矢状面图像的感兴趣区域中,提取血管的内、外膜,进而测量二维矢状面血管的内中膜厚度IMT。其血管提取的技术思路为:首先粗分割感兴趣区域ROI,定位内中膜大致位置;其次,细分割感兴趣区域ROI,分别获得内膜和外膜;最后计算内中膜厚度。According to the intima-media thickness defined in step (4), extract the intima and adventitia of the vessel in the region of interest of the preprocessed two-dimensional sagittal plane image, and then measure the intima-media of the two-dimensional sagittal plane image Thickness imt. The technical idea of blood vessel extraction is as follows: first, roughly segment the ROI of the region of interest, and locate the approximate position of the intima-media; secondly, finely segment the ROI of the region of interest, and obtain the intima and adventitia respectively; finally, calculate the thickness of the intima-media.
(4.2.1)感兴趣区域ROI的粗分割(图27)(4.2.1) Coarse segmentation of the region of interest ROI (Figure 27)
对ROI区域内的图像上每一列的点,从上到下依次标记0,1,2,……序号,作为每一列点的索引值。在ROI搜索中,为了减少冗余搜索,有必要将内、中膜潜在的ROI区域进一步缩小,故对感兴趣区域ROI进行粗分割,以获得下边界轮廓DB和上边界轮廓UB。感兴趣区域ROI的粗分割结果,如图27所示。For each column of points on the image in the ROI area, mark the serial numbers 0, 1, 2, ... from top to bottom as the index value of each column of points. In the ROI search, in order to reduce redundant searches, it is necessary to further narrow the potential ROI area of the intima and media, so the region of interest ROI is roughly segmented to obtain the lower boundary contour DB and upper boundary contour UB. The rough segmentation result of the region of interest ROI is shown in Figure 27.
(4.2.1.1)下边界轮廓DB获取(4.2.1.1) Lower boundary contour DB acquisition
首先,设定下边界候选点灰度值GVcandidate应满足的阈值条件:GVcandidate≥a×ΔGV+GVmin=a×(GVmax-GVmin)+GVmin,(一般的,权重系数a的范围为0.87~0.93,优选地a=0.9);然后,从左到右,顺次扫描ROI的每一列,并获得每一列的最大灰度值、最小灰度值以及满足阈值条件的下边界候选点。在下边界候选点中,标记索引值最大的点作为唯一下边界轮廓点;最后,顺次连接ROI中所有下边界轮廓点构成下边界轮廓DB。First, set the threshold condition that the gray value of the lower boundary candidate point GV candidate should satisfy: GV candidate ≥ a×ΔGV+GV min = a×(GV max -GV min )+GV min , (generally, the weight coefficient a The range is 0.87~0.93, preferably a=0.9); then, from left to right, scan each column of the ROI sequentially, and obtain the maximum gray value, the minimum gray value of each column, and the lower boundary candidates that meet the threshold condition point. Among the lower boundary candidate points, the point with the largest index value is used as the only lower boundary contour point; finally, all the lower boundary contour points in the ROI are sequentially connected to form the lower boundary contour DB.
(4.2.1.2)上边界轮廓UB获取;(4.2.1.2) Acquisition of upper boundary contour UB;
首先,将下边界轮廓DB在ROI中向上平行移动Δindex个像素距离,Δindex一般取值为20~30个像素,作为上边界临时轮廓UB_t,优选地Δindex=25;其次,取模板大小X×X,从左到右,从上到下,顺次计算上边界临时轮廓UB_t和下边界轮廓DB之间的区域中的每个像素所在模板的均值EX、方差DX。若满足阈值条件:EX≤b且DX≤c,则模板中心为上边界候选点;若不满足阈值条件,则对应UB_t轮廓点为上边界候选点。(一般的,模板大小X取8~15;b取0.05~0.09;c取0.11~0.15。优选地,X=10;b=0.08;c=0.14。)在每一列的上边界候选点中,标记索引值最大的作为唯一上边界轮廓点;最后,顺次连接ROI中所有上边界轮廓点构成上边界轮廓UB。First, move the lower boundary contour DB upward in ROI by Δ index pixel distance in parallel, and Δ index generally takes a value of 20 to 30 pixels as the upper boundary temporary contour UB_t, preferably Δ index = 25; secondly, take the template size X×X, from left to right, from top to bottom, sequentially calculate the mean value EX and variance DX of the template where each pixel in the area between the upper boundary temporary contour UB_t and the lower boundary contour DB is located. If the threshold condition is satisfied: EX≤b and DX≤c, then the center of the template is the upper boundary candidate point; if the threshold condition is not satisfied, the corresponding UB_t contour point is the upper boundary candidate point. (Generally, the template size X is 8~15; b is 0.05~0.09; c is 0.11~0.15. Preferably, X=10; b=0.08; c=0.14.) Among the upper boundary candidate points of each column, Mark the one with the largest index value as the unique upper boundary contour point; finally, connect all the upper boundary contour points in the ROI in sequence to form the upper boundary contour UB.
(4.2.2)感兴趣区域ROI的细分割(图28)(4.2.2) Subdivision of ROI in the region of interest (Figure 28)
感兴趣区域ROI的细分割,实质上是在下边界轮廓DB和上边界轮廓UB之间完成的。粗分割所得的图像区域即为内、中膜所在区域。为了将DB和UB之间正确的划分出血管腔、内膜、中膜、外膜以及外膜以外组织,可采用C均值、模糊C均值、支撑向量机SVM、AdaBoost算法等方法。在本发明中,采用基于模糊C均值聚类方法,加以说明血管壁内外轮廓的提取。感兴趣区域ROI的细分割结果,如图28所示。The subdivision of the region of interest ROI is essentially completed between the lower boundary contour DB and the upper boundary contour UB. The image area obtained by the rough segmentation is the area where the intima and media are located. In order to correctly divide DB and UB into vascular lumen, intima, media, adventitia, and tissues other than adventitia, methods such as C-means, fuzzy C-means, support vector machine SVM, and AdaBoost algorithm can be used. In the present invention, the fuzzy C-means-based clustering method is used to illustrate the extraction of the inner and outer contours of the blood vessel wall. The fine segmentation results of the region of interest ROI are shown in Figure 28.
根据远端血管壁特性,对血管部分可直观划分为“黑、灰、白”三类,即可大致对应“血管腔、内中膜、外膜及以外组织”。在本发明最终的分类结果中,设定灰度值最低的一类像素点为“血管腔”;灰度值最高的一类像素点为“外膜及以外组织”;其他灰度值的像素点为“内中膜”。According to the characteristics of the distal vascular wall, the vascular part can be intuitively divided into three categories: "black, gray, and white", which can roughly correspond to "vascular lumen, intima-media, adventitia and other tissues". In the final classification result of the present invention, set a class of pixels with the lowest gray value as "vascular lumen"; a class of pixels with the highest gray value as "adventitia and other tissues"; pixels with other gray values The point is "intima-media".
本发明聚类分割中采用模糊划分,使得每个给定数据点用值在[0,1]区间的隶属度来确定其属于各个类别的程度。一个数据集的隶属度的和总等于1。设数据集X={x1,x2,...,xn},每个样本有s个特征属性xj={xj1,xj2,...,xjs}(j=1,2,...,n)。在本发明中以像素灰度值作为唯一特征属性,即s=1。对于ROI中的每一列用FCM聚类来实现分割,这里我们以某一列为例,设该列共有n个像素样本。具体步骤如下:Fuzzy division is adopted in the clustering division of the present invention, so that each given data point uses the degree of membership whose value is in the interval [0, 1] to determine the degree to which it belongs to each category. The sum of the membership degrees of a data set is always equal to 1. Let the data set X={x 1 ,x 2 ,...,x n }, each sample has s characteristic attributes x j ={x j1 ,x j2 ,...,x js }(j=1, 2,...,n). In the present invention, the pixel gray value is used as the only characteristic attribute, ie s=1. For each column in the ROI, FCM clustering is used to achieve segmentation. Here we take a certain column as an example, and assume that the column has a total of n pixel samples. Specific steps are as follows:
(4.2.2.1)参数初始化:给定聚类类别数C(我们取C=10),设定迭代停止阈值ε(我们取ε=1e-5),设定最大迭代次数N(我们取N=100);(4.2.2.1) Parameter initialization: Given the number of clustering categories C (we take C=10), set the iteration stop threshold ε (we take ε=1e-5), and set the maximum number of iterations N (we take N= 100);
(4.2.2.2)初始化聚类原型分布矩阵P0:随机产生一个大小为n×C的矩阵,第j行对应该列第j个像素样本的隶属度值的分布,即第j个像素样本隶属于各类的可能性,且满足 (4.2.2.2) Initialize the clustering prototype distribution matrix P 0 : randomly generate a matrix of size n×C, the jth row corresponds to the distribution of the membership value of the jth pixel sample in the column, that is, the jth pixel sample belongs to to all kinds of possibilities, and to satisfy
(4.2.2.3)用下列公式计算或更新划分矩阵U(b),对于若dik≠0则有:(4.2.2.3) Calculate or update the partition matrix U (b) with the following formula, for If d ik ≠0 then:
若dik=0,则有:且对j≠k, If d ik =0, then: And for j≠k,
其中式中dik表示第i类中的像素样本xk与第i类的聚类中心之间的距离,m为加权指数,b为迭代次数。In the formula, d ik represents the distance between the pixel sample x k in the i-th class and the cluster center of the i-th class, m is the weighting index, and b is the number of iterations.
(4.2.2.4)用(式1)更新聚类分布矩阵P(b+1):(4.2.2.4) Use (Formula 1) to update the cluster distribution matrix P (b+1) :
(4.2.2.5)若某次迭代前后,聚类分布矩阵满足|P(b)-P(b+1)|<ε或b=N,则算法停止并输出划分矩阵U和聚类分布矩阵P,否则令b=b+1,返回步骤(4.2.2.3)。最终,获得所有“内中膜”的像素点。(4.2.2.5) If before and after a certain iteration, the clustering distribution matrix satisfies |P (b) -P (b+1) |<ε or b=N, then the algorithm stops and outputs the partition matrix U and the clustering distribution matrix P , otherwise let b=b+1, return to step (4.2.2.3). Finally, all the pixels of "intima-media" are obtained.
(4.2.3)计算该二维矢状面ROI内中膜厚度(4.2.3) Calculate the intima-media thickness of the two-dimensional sagittal ROI
经(4.2.2)聚类分割后,可获得该二维矢状面中ROI每列的内、外膜对应索引值,计算其差,并计算每一列的平均值,即为该二维矢状面对应内中膜厚度。After (4.2.2) clustering and segmentation, the corresponding index values of the intima and adventitia of each column of the ROI in the two-dimensional sagittal plane can be obtained, the difference is calculated, and the average value of each column is calculated, which is the two-dimensional vector The shape surface corresponds to the thickness of the intima-media.
(4.3)依据各感兴趣区域的内中膜厚度,统计计算其均值,即为矢状面的内中膜厚度(4.3) According to the intima-media thickness of each region of interest, the mean value is statistically calculated, which is the intima-media thickness in the sagittal plane
对二维矢状面序列图像的每一张,经上述(4.1)和(4.2)的步骤后,进行结果统计分析,获得矢状面血管内中膜厚度IMT的均值、方差等参数,作为血管评价指标。IMT值已成为预测心脑血管疾病的常用有效指标。For each two-dimensional sagittal sequence image, after the above steps (4.1) and (4.2), perform statistical analysis of the results to obtain the mean value and variance of the sagittal vascular intima-media thickness IMT as parameters of the blood vessel evaluation index. IMT value has become a common and effective indicator for predicting cardiovascular and cerebrovascular diseases.
步骤(5)依据二维冠状面序列图像,计算冠状面的内中膜厚度:Step (5) Calculate the coronal intima-media thickness based on the two-dimensional coronal sequence images:
本步骤中的内中膜厚度定义同步骤(4),即测量的内中膜厚度(Intima-media Thickness,IMT)即为血管腔-内膜交界面LIB与中膜-外膜交界面MAB之间的距离。The definition of intima-media thickness in this step is the same as in step (4), that is, the measured intima-media thickness (IMT) is the difference between the lumen-intima interface LIB and the media-adventitia interface MAB. distance between.
本步骤的主要技术思路为:提取二维冠状面序列图像的内、外膜,测量内中膜厚度IMT,计算冠状面内中膜厚度IMT的均值后,提供血管定量分析测量结果。取其中一张二维冠状面图像(参见图11)作为本例说明,其它图像均采用同样的方法加以处理,最终获得厚度测量结果;The main technical idea of this step is: extract the intima and adventitia of the two-dimensional coronal sequence images, measure the intima-media thickness IMT, calculate the mean value of the coronal intima-media thickness IMT, and provide the blood vessel quantitative analysis measurement results. Take one of the two-dimensional coronal images (see Figure 11) as this example, and the other images are processed in the same way, and finally the thickness measurement results are obtained;
(5.1)在二维冠状面序列图像(2D_Data_X)中,分别选取各主颈动脉血管感兴趣区域(2D_Data_X_i_ROI),并对各主颈动脉血管感兴趣区域预处理。预处理的技术思路为:先增强,再滤波。(5.1) In the two-dimensional coronal sequence images (2D_Data_X), each region of interest of the main carotid artery (2D_Data_X_i_ROI) was selected respectively, and each region of interest of the main carotid artery was preprocessed. The technical idea of preprocessing is: first enhance, then filter.
选取的二维冠状面序列图像包含主颈动脉CCA、血管腔、远端血管壁外膜、远端血管壁外膜外组织,从中提取包含远端血管壁外膜外组织的子区域作为感兴趣区域ROI。图11提取感兴趣区域ROI,结果如图29所示。The selected two-dimensional coronal sequence images include the aorta carotid artery CCA, vessel lumen, distal vessel wall adventitia, and distal vessel wall adventitia tissue, from which the sub-region containing the distal vessel wall adventitia tissue is extracted as the subregion of interest Regional ROIs. Figure 11 extracts the region of interest ROI, and the result is shown in Figure 29.
对其进行图像增强和滤波预处理。图像增强可采用自适应直方图均衡化、空间域的规定化、局部统计法等;滤波可采用低通滤波、均值滤波、中值滤波等等。下面以自适应直方图均衡化和自适应均值滤波为例,进行说明。获得预处理后的感兴趣区域,如图30所示。Perform image enhancement and filter preprocessing on it. Image enhancement can use adaptive histogram equalization, spatial domain regulation, local statistical methods, etc.; filtering can use low-pass filtering, mean filtering, median filtering, etc. The following uses adaptive histogram equalization and adaptive mean filtering as examples for illustration. Obtain the preprocessed ROI, as shown in Figure 30.
(5.1.1)图像增强(5.1.1) Image Enhancement
采用自适应直方图均衡化(AHE,Adaptive Histogram Equalization)进行图像增强。与传统的直方图均衡化相比,AHE更加注重图像的局部特征。AHE根据像素的局部统计特征来决定对比度增强方法。每个像素的灰度值都通过一个均衡化变换函数得到,而该变换函数是由以该像素为中心的一个局部字图像直方图得到的,称其为局部对比度增强法。公式为:Image enhancement using Adaptive Histogram Equalization (AHE, Adaptive Histogram Equalization). Compared with the traditional histogram equalization, AHE pays more attention to the local features of the image. AHE determines the contrast enhancement method according to the local statistical characteristics of pixels. The gray value of each pixel is obtained through an equalization transformation function, and the transformation function is obtained from a local word image histogram centered on the pixel, which is called a local contrast enhancement method. The formula is:
x′i,j=mi,j+k×(xi,j-mi,j)x' i,j =m i,j +k×(x i,j -m i,j )
其中,k为自适应参考量,表达式为 为窗W内的灰度方差,为整幅图像的灰度方差,k′为比例系数;xi,j,x′i,j分别为变换前后的灰度值;mi,j为窗W内像素灰度的平均值。Among them, k is the adaptive reference quantity, and the expression is is the gray variance in the window W, is the gray variance of the entire image, k' is the proportional coefficient; x i, j , x' i, j are the gray values before and after transformation respectively; m i, j is the average value of pixel gray in the window W.
(5.1.2)自适应均值滤波(5.1.2) Adaptive Mean Filtering
均值滤波也称为线性滤波,主要用区域平均法来去除噪声。线性滤波的基本原理是用均值代替原图像中的各个像素值,即对待处理的当前像素点的灰度值xi,j,选择一个模板,该模板由其近邻的若干像素组成,求模板中所有像素灰度的均值,再把该均值赋予当前像素点,作为处理后图像在该点上的灰度,即x′i,j。最后,获得预处理后的感兴趣区域,如图30所示。Mean filtering is also called linear filtering, and the area averaging method is mainly used to remove noise. The basic principle of linear filtering is to replace each pixel value in the original image with the mean value, that is, the gray value x i, j of the current pixel point to be processed, select a template, the template is composed of several pixels in its neighborhood, and find the value in the template The mean value of all pixel gray levels, and then assign the mean value to the current pixel point as the gray level of the processed image at this point, that is, x′ i, j . Finally, the preprocessed ROI is obtained, as shown in FIG. 30 .
(5.2)在预处理后的各主颈动脉血管感兴趣区域中,分割得到各主颈动脉血管的内膜和外膜,并计算各感兴趣区域的内中膜厚度(5.2) Segment the intima and adventitia of each aortic carotid vessel in the preprocessed regions of interest, and calculate the intima-media thickness of each region of interest
依据步骤(4)所定义的内中膜厚度,在预处理后的二维冠状面图像的感兴趣区域中,提取血管的内、外膜,进而测量二维冠状面血管的内中膜厚度IMT。其血管提取的技术思路为:首先初始化、并提取血管内膜轮廓;其次初始化、并提取血管外膜轮廓;最后计算内中膜厚度。According to the intima-media thickness defined in step (4), extract the intima and adventitia of the blood vessel in the region of interest of the preprocessed two-dimensional coronal image, and then measure the intima-media thickness IMT of the two-dimensional coronal plane image . The technical idea of its blood vessel extraction is: first initialize and extract the contour of the intima of the blood vessel; secondly initialize and extract the contour of the adventitia of the blood vessel; finally calculate the thickness of the intima and media.
(5.2.1)初始化内轮廓(5.2.1) Initialize the inner contour
鉴于主颈动脉CCA的结构特点,二维冠状面序列图像极易受到分叉点和外颈动脉ECA的伪影影响,导致二维冠状面序列图像至多只有3张左右。从而增加了二维冠状面分割的难度。为了快速获得接近真实的内膜,本发明中采用基于数学形态学方法来获取初始化内轮廓。In view of the structural characteristics of the main carotid artery CCA, the two-dimensional coronal sequence images are extremely susceptible to the artifacts of the bifurcation point and the external carotid artery ECA, resulting in only about three two-dimensional coronal sequence images at most. This increases the difficulty of 2D coronal plane segmentation. In order to quickly obtain an inner membrane close to the real one, the method based on mathematical morphology is used in the present invention to obtain the initialized inner contour.
(5.2.1.1)图像阈值化(5.2.1.1) Image Thresholding
阈值化的方法主要有四类:基于点的全局阈值方法、基于区域的全局阈值方法、局部阈值方法和多阈值方法。本发明实施例采用大津算法OTSU(自适应阈值化),使得白色区域包含内膜、中膜、外膜、外膜外组织以及部分噪声,黑色区域为血管腔,如图31所示;There are four main categories of thresholding methods: point-based global thresholding methods, region-based global thresholding methods, local thresholding methods, and multi-thresholding methods. The embodiment of the present invention adopts the Otsu algorithm OTSU (adaptive thresholding), so that the white area includes the intima, media, adventitia, extra-adventitia tissue and part of the noise, and the black area is the vascular lumen, as shown in Figure 31;
(5.2.1.2)填充空洞(5.2.1.2) filling holes
为了填充图27所示白色区域中的空洞,可采用模板匹配法、逐点扫描法等等。鉴于二值图像的特点,本发明采用形态学闭运算,结果如图32所示。In order to fill the holes in the white area shown in FIG. 27, template matching method, point-by-point scanning method, etc. can be used. In view of the characteristics of the binary image, the present invention adopts the morphological closing operation, and the result is shown in FIG. 32 .
(5.2.1.3)去除毛刺(5.2.1.3) Deburring
为了使得血管内膜表面平滑,符合生理特点,采用数学形态学开运算,去除白色区域表面附加噪声所产生的毛刺,结果如图33所示;In order to make the surface of the vascular intima smooth and conform to the physiological characteristics, the mathematical morphology opening operation is used to remove the burrs generated by the additional noise on the surface of the white area, and the result is shown in Figure 33;
(5.2.1.3)修正初始内膜轮廓(5.2.1.3) Correction of initial intimal contour
针对图33所示的内膜表面边缘点,对白色区域的上边缘像素点进行间隙抽取,以抽取的像素点向下提取与其间距3~5个像素距离的像素点,即可得到一系列的内膜边缘初始坐标点,将系列内膜边缘初始坐标点连线作为内膜初始轮廓,如图34所示;For the edge points of the intima surface shown in Figure 33, perform gap extraction on the upper edge pixels of the white area, and use the extracted pixels to extract pixels with a distance of 3 to 5 pixels from them to obtain a series of The initial coordinate points of the intima edge, the series of initial coordinate points of the intima edge are used as the initial contour of the intima, as shown in Figure 34;
(5.2.2)提取内轮廓(图35)(5.2.2) Extract inner contour (Figure 35)
依据感兴趣区域的梯度信息,采用经典蛇形(Snake)方法计算内膜初始轮廓的内、外作用力。将内、外作用力进行比较,依据比较结果演化轮廓直到内、外作用力相等,最终确定的轮廓即为提取的内轮廓,如图35所示,其中内膜的初始轮廓为虚线;内膜的最终轮廓为实线。除经典蛇形(Snake)方法以外,还可采用水平集、CV模型、GVF-Snak等演化方法。According to the gradient information of the region of interest, the classic snake method is used to calculate the internal and external forces of the initial contour of the intima. Compare the internal and external forces, and evolve the contour according to the comparison results until the internal and external forces are equal, and the final contour is the extracted internal contour, as shown in Figure 35, where the initial contour of the inner membrane is a dotted line; the inner membrane The final contour of is a solid line. In addition to the classic snake (Snake) method, evolutionary methods such as level set, CV model, and GVF-Snak can also be used.
(5.2.3)初始化外膜轮廓(5.2.3) Initialize the adventitia contour
将(5.2.1)获得的内膜初始轮廓向下平行移动Δindex个像素距离,可获得初始外膜轮廓。一般的Δindex为15~30,优选地Δindex取25。The initial adventitia contour can be obtained by moving the initial contour of the intima obtained in (5.2.1) downward by Δ index pixel distance in parallel. The general Δ index is 15~30, and the Δ index is preferably 25.
(5.2.4)提取外膜轮廓(图36)(5.2.4) Extract the outer membrane contour (Figure 36)
依据感兴趣区域的梯度信息、场信息,采用梯度向量场方法GVF-Snake计算外膜初始轮廓的内、外作用力。将内、外作用力进行比较,依据比较结果演化轮廓直到内、外作用力相等,最终确定的轮廓即为外膜轮廓,如图36所示,其中外膜的初始轮廓为虚线;外膜的最终轮廓为实线。除GVF-Snake算法外,还可采用经典蛇形(Snake)、水平集、CV模型等演化方法。According to the gradient information and field information of the region of interest, the gradient vector field method GVF-Snake is used to calculate the internal and external forces of the initial contour of the adventitia. Compare the internal and external forces, and evolve the contour according to the comparison results until the internal and external forces are equal, and the finally determined contour is the contour of the adventitia, as shown in Figure 36, where the initial contour of the adventitia is a dotted line; The final contour is a solid line. In addition to the GVF-Snake algorithm, evolutionary methods such as classic snake (Snake), level set, and CV models can also be used.
(5.2.5)计算该二维冠状面ROI内中膜厚度(图37)(5.2.5) Calculate the intima-media thickness of the two-dimensional coronal ROI (Figure 37)
经(5.2.1)-(5.2.4)分割后,可获得该二维冠状面总ROI每列内、外膜对应像素点位置,计算内、外膜轮廓对应像素点之间的像素点间距,并将其转化为实际距离,并计算每一列的平均值,即为该二维冠状面对应内中膜厚度。如图37所示,上方内膜最终轮廓(实线)和下方外膜最终轮廓(实线)的间距即为所求内中膜厚度。After (5.2.1)-(5.2.4) segmentation, the corresponding pixel positions of the inner and outer membranes in each column of the total ROI of the two-dimensional coronal plane can be obtained, and the pixel spacing between the corresponding pixels of the inner and outer membrane contours can be calculated , and convert it into the actual distance, and calculate the average value of each column, that is, the intima-media thickness corresponding to the two-dimensional coronal plane. As shown in Figure 37, the distance between the final contour of the upper intima (solid line) and the final contour of the lower adventitia (solid line) is the desired intima-media thickness.
(5.3)依据各感兴趣区域的内中膜厚度,统计计算其均值,即为冠状面的内中膜厚度;(5.3) According to the intima-media thickness of each region of interest, statistically calculate its mean value, which is the intima-media thickness of the coronal plane;
对二维冠状面序列图像的每一张,经上述(5.1)和(5.2)的步骤后,进行结果统计分析,获得冠状面血管内中膜厚度IMT的均值、方差等参数,作为血管评价指标。IMT值已成为预测心脑血管疾病的常用有效指标。For each of the two-dimensional coronal sequence images, after the above steps (5.1) and (5.2), perform statistical analysis of the results, and obtain parameters such as the mean value and variance of coronal vascular intima-media thickness IMT as vascular evaluation indicators . IMT value has become a common and effective indicator for predicting cardiovascular and cerebrovascular diseases.
方案验证:Scheme verification:
将(3)(4)(5)的分割结果与手动分割结果比较,计算三视图分割结果的DSC(Dice Similarity Coefficient)、MAD(Mean Absolute Distance)和MAXD(Maximum Absolute Distance),进行算法验证性评价与分析。如图22、图24、图38和表1所示:Compare the segmentation results of (3), (4) and (5) with the manual segmentation results, and calculate the DSC (Dice Similarity Coefficient), MAD (Mean Absolute Distance) and MAXD (Maximum Absolute Distance) of the three-view segmentation results for algorithm verification Evaluation and Analysis. As shown in Figure 22, Figure 24, Figure 38 and Table 1:
A、相似系数DSC:A. Similarity coefficient DSC:
相似系数DSC是一种度量分割算法的标准,用于评价面积的相似度。The similarity coefficient DSC is a standard for measuring the segmentation algorithm, which is used to evaluate the similarity of the area.
其中,RM和RA分别表示手动轮廓围绕的区域和自动轮廓围绕的区域。相似系数DSC越接近1,说明两方法的接近程度越高。Among them, R M and R A represent the area surrounded by the manual contour and the area surrounded by the automatic contour, respectively. The closer the similarity coefficient DSC is to 1, the closer the two methods are.
B、平均绝对距离MAD和最大绝对距离MAXDB. Average absolute distance MAD and maximum absolute distance MAXD
平均绝对距离MAD和最大绝对距离MAXD,都是用来度量分割算法的标准,用于评价距离相似度。Both the average absolute distance MAD and the maximum absolute distance MAXD are used to measure the segmentation algorithm and are used to evaluate the distance similarity.
假设手动轮廓点为{mi:i=1,廓点为准,对应自动轮廓点为{ai:i=1,轮廓点为。则Assuming that the manual contour point is {m i : i=1, the contour point shall prevail, and the corresponding automatic contour point is {a i : i=1, the contour point shall be . but
其中,d(mi,A)为手动轮廓与自动轮廓的对应点间的相对距离。平均绝对距离MAD和最大绝对距离MAXD越小,说明两方法的接近程度越高。Among them, d(m i ,A) is the relative distance between the corresponding points of the manual contour and the automatic contour. The smaller the mean absolute distance MAD and the maximum absolute distance MAXD, the closer the two methods are.
表1本发明与手动分割结果比较Table 1 The present invention compares with manual segmentation result
上表中,测量厚度均值、标准差,单位为mm。In the above table, the mean value and standard deviation of the measured thickness are in mm.
从表中可以看出,(1)本发明中所采用的分割方法,与专家手动分割方法相当,验证了其可行性与鲁棒性;(2)在二维横断面的序列图像分割中,本发明方法与专家手动分割方法有较高的相似度,相似系数DSC均大于90%,平均绝对距离MAD和最大绝对距离MAXD均在误差范围内;(3)在二维矢状面和冠状面的IMT测量中,两方法均与手动测量IMT金标准相当,平均误差均在1毫米左右;(4)二维矢状面的测量结果优于二维冠状面,这与序列图像的数量、质量、具体分割方法均有一定关系。另外,从操作时间上比较,本发明在3分钟即可完成一个三维体数据的测量;而经验丰富的医生则往往需要8分钟完成手动测量。It can be seen from the table that (1) the segmentation method used in the present invention is equivalent to the expert manual segmentation method, and its feasibility and robustness have been verified; (2) in the sequence image segmentation of two-dimensional cross-section, The method of the present invention has a higher similarity with the expert manual segmentation method, the similarity coefficient DSC is greater than 90%, the average absolute distance MAD and the maximum absolute distance MAXD are all within the error range; (3) in the two-dimensional sagittal plane and coronal plane In the IMT measurement, the two methods are equivalent to the gold standard of manual IMT measurement, and the average error is about 1 mm; (4) The measurement results of the two-dimensional sagittal plane are better than the two-dimensional coronal plane, which is related to the quantity and quality of the sequence images. , The specific segmentation method has a certain relationship. In addition, in terms of operation time, the present invention can complete the measurement of a three-dimensional volume data in 3 minutes; while experienced doctors usually need 8 minutes to complete the manual measurement.
以上所列实施示例仅表达了本发明的几种实施方式,其描述较为具体和详细,但并不能因此而理解为对发明专利范围的限制。应当指出并强调的是,对本领域的相关技术人员,在不脱离本发明的前提下,还能有多种变形和改进,这些都应属于本发明的保护范围。因此,本发明专利的保护范围应以所附权利要求为准。The implementation examples listed above only express several implementation modes of the present invention, and the description thereof is relatively specific and detailed, but should not be construed as limiting the patent scope of the invention. It should be pointed out and emphasized that those skilled in the art can make various modifications and improvements without departing from the present invention, and these should belong to the protection scope of the present invention. Therefore, the protection scope of the patent for the present invention should be based on the appended claims.
本领域的技术人员容易理解,以上所述仅为本发明的较佳实施例而已,并不用以限制本发明,凡在本发明的精神和原则之内所作的任何修改、等同替换和改进等,均应包含在本发明的保护范围之内。It is easy for those skilled in the art to understand that the above descriptions are only preferred embodiments of the present invention, and are not intended to limit the present invention. Any modifications, equivalent replacements and improvements made within the spirit and principles of the present invention, All should be included within the protection scope of the present invention.
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